Multiple sequence alignment - TraesCS1A01G394200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G394200 chr1A 100.000 2506 0 0 1 2506 560313317 560315822 0.000000e+00 4628.0
1 TraesCS1A01G394200 chr1B 85.338 1064 82 33 231 1287 645520621 645519625 0.000000e+00 1033.0
2 TraesCS1A01G394200 chr1B 85.780 436 42 8 1785 2213 645518220 645517798 6.360000e-121 444.0
3 TraesCS1A01G394200 chr1B 90.972 288 20 2 1317 1600 645519456 645519171 1.410000e-102 383.0
4 TraesCS1A01G394200 chr1B 93.985 133 6 2 2254 2386 645517317 645517187 1.520000e-47 200.0
5 TraesCS1A01G394200 chr1B 90.580 138 12 1 1 138 568749334 568749198 5.510000e-42 182.0
6 TraesCS1A01G394200 chr1B 96.923 65 0 2 1786 1849 22073926 22073989 9.480000e-20 108.0
7 TraesCS1A01G394200 chr1B 92.647 68 1 1 943 1010 398959566 398959503 7.380000e-16 95.3
8 TraesCS1A01G394200 chr1B 92.647 68 1 1 943 1010 398959718 398959655 7.380000e-16 95.3
9 TraesCS1A01G394200 chr1D 85.578 1047 78 39 603 1631 467626586 467625595 0.000000e+00 1029.0
10 TraesCS1A01G394200 chr1D 85.362 608 45 16 1786 2386 467625139 467624569 7.720000e-165 590.0
11 TraesCS1A01G394200 chr1D 85.613 424 25 15 184 602 467627712 467627320 1.790000e-111 412.0
12 TraesCS1A01G394200 chr1D 92.481 133 8 2 7 138 438026442 438026311 3.290000e-44 189.0
13 TraesCS1A01G394200 chr1D 98.246 57 0 1 1786 1842 470608042 470608097 5.700000e-17 99.0
14 TraesCS1A01G394200 chr5B 80.802 1422 131 71 243 1628 480298177 480299492 0.000000e+00 983.0
15 TraesCS1A01G394200 chr5B 95.522 67 0 3 1786 1851 597214810 597214874 1.230000e-18 104.0
16 TraesCS1A01G394200 chr5A 80.459 1438 139 57 243 1628 505623524 505624871 0.000000e+00 968.0
17 TraesCS1A01G394200 chr5A 95.455 66 0 3 1786 1850 338577798 338577861 4.410000e-18 102.0
18 TraesCS1A01G394200 chr5D 80.638 909 95 40 243 1134 400293011 400293855 1.640000e-176 628.0
19 TraesCS1A01G394200 chr5D 82.188 393 43 12 1202 1570 400293848 400294237 1.870000e-81 313.0
20 TraesCS1A01G394200 chr5D 92.647 136 8 2 1 135 517370421 517370555 7.070000e-46 195.0
21 TraesCS1A01G394200 chr5D 94.444 72 1 3 1786 1856 468686652 468686583 9.480000e-20 108.0
22 TraesCS1A01G394200 chr5D 95.522 67 0 3 1786 1851 255507799 255507863 1.230000e-18 104.0
23 TraesCS1A01G394200 chr4D 88.339 283 22 4 1332 1614 432433841 432434112 1.860000e-86 329.0
24 TraesCS1A01G394200 chr6B 95.556 135 6 0 1 135 380543803 380543937 1.510000e-52 217.0
25 TraesCS1A01G394200 chr3A 91.367 139 11 1 1 138 129168064 129167926 3.290000e-44 189.0
26 TraesCS1A01G394200 chr3A 93.056 72 1 4 1786 1856 456447384 456447316 4.410000e-18 102.0
27 TraesCS1A01G394200 chrUn 92.969 128 9 0 3 130 241924376 241924503 1.180000e-43 187.0
28 TraesCS1A01G394200 chr7B 92.969 128 9 0 3 130 654506096 654505969 1.180000e-43 187.0
29 TraesCS1A01G394200 chr7B 93.548 124 7 1 9 132 725970293 725970415 1.530000e-42 183.0
30 TraesCS1A01G394200 chr7B 91.111 135 10 2 2 135 499254230 499254363 5.510000e-42 182.0
31 TraesCS1A01G394200 chr7B 100.000 28 0 0 2479 2506 145725435 145725408 5.000000e-03 52.8
32 TraesCS1A01G394200 chr6A 94.444 36 0 2 2470 2503 105204210 105204245 1.000000e-03 54.7
33 TraesCS1A01G394200 chr7A 100.000 28 0 0 2479 2506 720378042 720378069 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G394200 chr1A 560313317 560315822 2505 False 4628.0 4628 100.000000 1 2506 1 chr1A.!!$F1 2505
1 TraesCS1A01G394200 chr1B 645517187 645520621 3434 True 515.0 1033 89.018750 231 2386 4 chr1B.!!$R3 2155
2 TraesCS1A01G394200 chr1D 467624569 467627712 3143 True 677.0 1029 85.517667 184 2386 3 chr1D.!!$R2 2202
3 TraesCS1A01G394200 chr5B 480298177 480299492 1315 False 983.0 983 80.802000 243 1628 1 chr5B.!!$F1 1385
4 TraesCS1A01G394200 chr5A 505623524 505624871 1347 False 968.0 968 80.459000 243 1628 1 chr5A.!!$F2 1385
5 TraesCS1A01G394200 chr5D 400293011 400294237 1226 False 470.5 628 81.413000 243 1570 2 chr5D.!!$F3 1327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 581 0.034767 CTGCACCATGTCACCATCCT 60.035 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 3877 0.03213 CATCGGTCATACCTGTCGGG 59.968 60.0 0.0 0.0 35.66 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.583442 GGGGGAGGGAGGGCCTAG 62.583 77.778 5.73 0.00 0.00 3.02
85 86 3.449126 GGGGAGGGAGGGCCTAGA 61.449 72.222 5.73 0.00 0.00 2.43
86 87 2.202899 GGGAGGGAGGGCCTAGAG 59.797 72.222 5.73 0.00 0.00 2.43
87 88 2.202899 GGAGGGAGGGCCTAGAGG 59.797 72.222 5.73 0.00 38.53 3.69
147 148 2.413351 GCGAGTGCGGCTGATCTA 59.587 61.111 0.00 0.00 38.16 1.98
148 149 1.659954 GCGAGTGCGGCTGATCTAG 60.660 63.158 0.00 0.00 38.16 2.43
149 150 1.007964 CGAGTGCGGCTGATCTAGG 60.008 63.158 0.00 0.00 0.00 3.02
150 151 1.365633 GAGTGCGGCTGATCTAGGG 59.634 63.158 0.00 0.00 0.00 3.53
151 152 1.381872 AGTGCGGCTGATCTAGGGT 60.382 57.895 0.00 0.00 0.00 4.34
152 153 0.106167 AGTGCGGCTGATCTAGGGTA 60.106 55.000 0.00 0.00 0.00 3.69
153 154 0.969894 GTGCGGCTGATCTAGGGTAT 59.030 55.000 0.00 0.00 0.00 2.73
154 155 1.067495 GTGCGGCTGATCTAGGGTATC 60.067 57.143 0.00 0.00 0.00 2.24
155 156 1.257743 GCGGCTGATCTAGGGTATCA 58.742 55.000 0.00 0.00 32.56 2.15
156 157 1.067495 GCGGCTGATCTAGGGTATCAC 60.067 57.143 0.00 0.00 30.38 3.06
157 158 1.200252 CGGCTGATCTAGGGTATCACG 59.800 57.143 0.00 0.00 30.38 4.35
158 159 1.067495 GGCTGATCTAGGGTATCACGC 60.067 57.143 0.00 0.00 31.96 5.34
159 160 1.067495 GCTGATCTAGGGTATCACGCC 60.067 57.143 0.00 0.00 30.38 5.68
160 161 2.239400 CTGATCTAGGGTATCACGCCA 58.761 52.381 0.00 0.00 30.38 5.69
161 162 2.628178 CTGATCTAGGGTATCACGCCAA 59.372 50.000 0.00 0.00 30.38 4.52
162 163 2.628178 TGATCTAGGGTATCACGCCAAG 59.372 50.000 0.00 0.00 0.00 3.61
163 164 0.750850 TCTAGGGTATCACGCCAAGC 59.249 55.000 0.00 0.00 0.00 4.01
193 194 1.007964 CGAGAGCTACTCATGGGCG 60.008 63.158 11.93 0.00 45.14 6.13
194 195 1.729470 CGAGAGCTACTCATGGGCGT 61.729 60.000 11.93 0.00 45.14 5.68
195 196 0.249238 GAGAGCTACTCATGGGCGTG 60.249 60.000 0.00 0.00 44.36 5.34
196 197 0.972983 AGAGCTACTCATGGGCGTGT 60.973 55.000 0.00 0.00 32.06 4.49
197 198 0.744874 GAGCTACTCATGGGCGTGTA 59.255 55.000 0.00 0.00 0.00 2.90
198 199 1.341531 GAGCTACTCATGGGCGTGTAT 59.658 52.381 0.00 0.00 0.00 2.29
199 200 2.557056 GAGCTACTCATGGGCGTGTATA 59.443 50.000 0.00 0.00 0.00 1.47
200 201 2.963101 AGCTACTCATGGGCGTGTATAA 59.037 45.455 0.00 0.00 0.00 0.98
201 202 3.386726 AGCTACTCATGGGCGTGTATAAA 59.613 43.478 0.00 0.00 0.00 1.40
202 203 4.040461 AGCTACTCATGGGCGTGTATAAAT 59.960 41.667 0.00 0.00 0.00 1.40
203 204 5.245301 AGCTACTCATGGGCGTGTATAAATA 59.755 40.000 0.00 0.00 0.00 1.40
229 230 2.424601 TCTTGCCTGCATGCTAATGTTC 59.575 45.455 20.33 1.82 36.08 3.18
269 270 6.989659 AGAGACAAACTTTGACGTTAGGATA 58.010 36.000 8.55 0.00 0.00 2.59
271 272 7.545965 AGAGACAAACTTTGACGTTAGGATATG 59.454 37.037 8.55 0.00 0.00 1.78
282 283 3.674682 CGTTAGGATATGCTCTGCTAGGC 60.675 52.174 0.00 0.00 0.00 3.93
297 298 3.003480 GCTAGGCGTCAAGATTCAACTT 58.997 45.455 0.00 0.00 0.00 2.66
337 338 6.072838 GGTGAGCCTTTTAGTGTAGTTTTACC 60.073 42.308 0.00 0.00 0.00 2.85
379 384 0.678048 GCTTAGTGGGGGCTCACAAG 60.678 60.000 0.00 12.93 39.93 3.16
464 476 3.310307 TCTGCAGCCCACGCACTA 61.310 61.111 9.47 0.00 37.52 2.74
467 479 4.767255 GCAGCCCACGCACTAGCT 62.767 66.667 0.00 0.00 39.10 3.32
468 480 2.816958 CAGCCCACGCACTAGCTG 60.817 66.667 0.00 0.00 45.92 4.24
469 481 4.767255 AGCCCACGCACTAGCTGC 62.767 66.667 0.00 7.10 43.21 5.25
530 554 4.316025 TTGGGAAGAAAATCCGGAGAAT 57.684 40.909 11.34 0.00 40.62 2.40
531 555 4.316025 TGGGAAGAAAATCCGGAGAATT 57.684 40.909 11.34 4.40 40.62 2.17
556 580 0.035152 TCTGCACCATGTCACCATCC 60.035 55.000 0.00 0.00 0.00 3.51
557 581 0.034767 CTGCACCATGTCACCATCCT 60.035 55.000 0.00 0.00 0.00 3.24
558 582 1.210234 CTGCACCATGTCACCATCCTA 59.790 52.381 0.00 0.00 0.00 2.94
559 583 1.845791 TGCACCATGTCACCATCCTAT 59.154 47.619 0.00 0.00 0.00 2.57
560 584 3.044894 TGCACCATGTCACCATCCTATA 58.955 45.455 0.00 0.00 0.00 1.31
561 585 3.652387 TGCACCATGTCACCATCCTATAT 59.348 43.478 0.00 0.00 0.00 0.86
610 1367 1.075601 TTGATCCCCAACTTCCTGCT 58.924 50.000 0.00 0.00 0.00 4.24
611 1368 1.075601 TGATCCCCAACTTCCTGCTT 58.924 50.000 0.00 0.00 0.00 3.91
711 1469 2.106074 CGTGCCTAGCAATTCGCCA 61.106 57.895 0.00 0.00 41.47 5.69
713 1471 0.525761 GTGCCTAGCAATTCGCCAAA 59.474 50.000 0.00 0.00 41.47 3.28
749 1513 1.453155 CCAACGAAATGCTAGCCACT 58.547 50.000 13.29 0.00 0.00 4.00
838 1605 8.196103 ACTACTTACATAGCAACTAACTAAGGC 58.804 37.037 0.00 0.00 0.00 4.35
870 1637 2.708051 CTTCAGAAGCCTCAATCTGCA 58.292 47.619 0.00 0.00 42.21 4.41
872 1639 0.733729 CAGAAGCCTCAATCTGCAGC 59.266 55.000 9.47 0.00 36.92 5.25
873 1644 0.327259 AGAAGCCTCAATCTGCAGCA 59.673 50.000 9.47 0.00 0.00 4.41
888 1662 4.402851 GCACCTTGCTCCATGACA 57.597 55.556 0.00 0.00 40.96 3.58
889 1663 1.878775 GCACCTTGCTCCATGACAC 59.121 57.895 0.00 0.00 40.96 3.67
890 1664 0.890542 GCACCTTGCTCCATGACACA 60.891 55.000 0.00 0.00 40.96 3.72
891 1665 1.162698 CACCTTGCTCCATGACACAG 58.837 55.000 0.00 0.00 0.00 3.66
911 1685 1.594862 GCTGTGAGCCGTGCTATAAAG 59.405 52.381 0.00 0.00 39.88 1.85
928 1707 6.260936 GCTATAAAGTAGCTTGCAATTCAGGA 59.739 38.462 0.00 0.00 37.56 3.86
930 1709 3.423539 AGTAGCTTGCAATTCAGGACA 57.576 42.857 0.00 0.00 0.00 4.02
931 1710 3.341823 AGTAGCTTGCAATTCAGGACAG 58.658 45.455 0.00 0.00 0.00 3.51
932 1711 1.542492 AGCTTGCAATTCAGGACAGG 58.458 50.000 0.00 0.00 0.00 4.00
933 1712 1.202976 AGCTTGCAATTCAGGACAGGT 60.203 47.619 0.00 0.00 0.00 4.00
934 1713 1.200948 GCTTGCAATTCAGGACAGGTC 59.799 52.381 0.00 0.00 0.00 3.85
962 1741 1.064685 TCTACATGAGTGAGCCCTCGA 60.065 52.381 0.00 0.00 34.04 4.04
963 1742 1.959985 CTACATGAGTGAGCCCTCGAT 59.040 52.381 0.00 0.00 34.04 3.59
964 1743 0.749649 ACATGAGTGAGCCCTCGATC 59.250 55.000 0.00 0.00 34.04 3.69
965 1744 0.318529 CATGAGTGAGCCCTCGATCG 60.319 60.000 9.36 9.36 34.04 3.69
1010 1789 3.817647 ACACTTGGAGAAATGCTTCAGAC 59.182 43.478 0.00 0.00 32.45 3.51
1033 1812 2.699846 AGACAGATGGAGAGATTGCCTC 59.300 50.000 0.00 0.00 42.28 4.70
1136 1975 6.096141 CCTGGTAATCGTCTCATGCTATCTAT 59.904 42.308 0.00 0.00 0.00 1.98
1137 1976 7.089770 TGGTAATCGTCTCATGCTATCTATC 57.910 40.000 0.00 0.00 0.00 2.08
1138 1977 6.887002 TGGTAATCGTCTCATGCTATCTATCT 59.113 38.462 0.00 0.00 0.00 1.98
1139 1978 8.047310 TGGTAATCGTCTCATGCTATCTATCTA 58.953 37.037 0.00 0.00 0.00 1.98
1140 1979 8.556194 GGTAATCGTCTCATGCTATCTATCTAG 58.444 40.741 0.00 0.00 0.00 2.43
1141 1980 9.320352 GTAATCGTCTCATGCTATCTATCTAGA 57.680 37.037 0.00 0.00 36.65 2.43
1142 1981 8.437360 AATCGTCTCATGCTATCTATCTAGAG 57.563 38.462 0.00 0.00 35.50 2.43
1143 1982 7.176589 TCGTCTCATGCTATCTATCTAGAGA 57.823 40.000 0.00 0.00 35.50 3.10
1144 1983 7.791029 TCGTCTCATGCTATCTATCTAGAGAT 58.209 38.462 0.00 0.00 39.54 2.75
1145 1984 8.264347 TCGTCTCATGCTATCTATCTAGAGATT 58.736 37.037 0.00 0.00 37.38 2.40
1146 1985 8.892723 CGTCTCATGCTATCTATCTAGAGATTT 58.107 37.037 0.00 0.00 37.38 2.17
1193 2044 6.644347 TCTGACTGAGAGGACAATTTATTCC 58.356 40.000 0.00 0.00 0.00 3.01
1199 2050 7.941238 ACTGAGAGGACAATTTATTCCCATATG 59.059 37.037 0.00 0.00 31.51 1.78
1251 2102 1.414181 AGAAGATCGACGCAATCCCAT 59.586 47.619 0.00 0.00 0.00 4.00
1257 2108 1.490693 CGACGCAATCCCATCTTCCG 61.491 60.000 0.00 0.00 0.00 4.30
1284 2135 3.077359 GCAGATGGCCAGGTGATAATAC 58.923 50.000 19.09 0.00 36.11 1.89
1287 2138 5.482908 CAGATGGCCAGGTGATAATACTAC 58.517 45.833 13.05 0.00 0.00 2.73
1290 2141 5.290493 TGGCCAGGTGATAATACTACTTG 57.710 43.478 0.00 0.00 0.00 3.16
1327 2317 2.555199 GCAAGTAGCTATGTCAGGTGG 58.445 52.381 0.00 0.00 41.15 4.61
1541 2533 1.466167 CTGCATGTGTGTTCCTAGTGC 59.534 52.381 0.00 0.00 0.00 4.40
1551 2543 0.320421 TTCCTAGTGCTGCACGGTTC 60.320 55.000 25.39 3.00 39.64 3.62
1552 2544 1.741770 CCTAGTGCTGCACGGTTCC 60.742 63.158 25.39 2.23 39.64 3.62
1553 2545 1.005037 CTAGTGCTGCACGGTTCCA 60.005 57.895 25.39 8.26 39.64 3.53
1554 2546 1.291877 CTAGTGCTGCACGGTTCCAC 61.292 60.000 25.39 0.69 39.64 4.02
1628 2883 0.961753 GCTTGTTACTTGCAAGGGCT 59.038 50.000 29.18 12.07 42.44 5.19
1631 2886 3.383761 CTTGTTACTTGCAAGGGCTTTG 58.616 45.455 29.18 11.95 39.53 2.77
1633 2888 3.230134 TGTTACTTGCAAGGGCTTTGAT 58.770 40.909 29.18 9.13 39.21 2.57
1634 2889 3.640967 TGTTACTTGCAAGGGCTTTGATT 59.359 39.130 29.18 8.41 39.21 2.57
1635 2890 2.825861 ACTTGCAAGGGCTTTGATTG 57.174 45.000 29.18 1.85 39.21 2.67
1639 2930 1.435577 GCAAGGGCTTTGATTGCTTG 58.564 50.000 14.11 2.60 44.57 4.01
1650 2941 1.130955 GATTGCTTGTTTGTGGCACG 58.869 50.000 13.77 0.00 35.62 5.34
1665 2956 6.470557 TGTGGCACGTAATTAAACTAGAAC 57.529 37.500 13.77 0.00 0.00 3.01
1672 2963 9.874215 GCACGTAATTAAACTAGAACTTTTTCT 57.126 29.630 0.00 0.00 44.70 2.52
1675 2966 9.872757 CGTAATTAAACTAGAACTTTTTCTGCA 57.127 29.630 0.00 0.00 42.41 4.41
1688 3195 7.288810 ACTTTTTCTGCACCAAGATGATTTA 57.711 32.000 0.00 0.00 0.00 1.40
1788 3558 7.913674 ATCTAAAACTCATGAACAGAGGAAC 57.086 36.000 0.00 0.00 37.43 3.62
1789 3559 6.231211 TCTAAAACTCATGAACAGAGGAACC 58.769 40.000 0.00 0.00 37.43 3.62
1790 3560 4.437682 AAACTCATGAACAGAGGAACCA 57.562 40.909 0.00 0.00 37.43 3.67
1845 3679 1.779061 ATTGGGCCACGGAGTCTTGT 61.779 55.000 5.23 0.00 41.61 3.16
1909 3749 5.532406 AGACAAGAGTGCACAACATTACATT 59.468 36.000 21.04 0.00 0.00 2.71
1929 3769 6.255215 ACATTTCTAAGTGTGAAACGTGTTG 58.745 36.000 0.00 0.00 42.39 3.33
1934 3774 2.706890 AGTGTGAAACGTGTTGAAGGT 58.293 42.857 0.00 0.00 42.39 3.50
1954 3794 5.047188 AGGTTTTGCTTGGTTTCATTTACG 58.953 37.500 0.00 0.00 0.00 3.18
1955 3795 4.210328 GGTTTTGCTTGGTTTCATTTACGG 59.790 41.667 0.00 0.00 0.00 4.02
2015 3860 1.819632 CTCGGGTTACATGGCTGCC 60.820 63.158 12.87 12.87 0.00 4.85
2018 3863 2.406616 GGGTTACATGGCTGCCACG 61.407 63.158 25.99 19.91 35.80 4.94
2029 3874 3.027170 CTGCCACGCTTGCTTACCG 62.027 63.158 0.00 0.00 0.00 4.02
2061 3906 6.183360 ACAGGTATGACCGATGTAGTAGAAAC 60.183 42.308 0.00 0.00 44.90 2.78
2074 3919 6.186957 TGTAGTAGAAACTCGGTGGGTTATA 58.813 40.000 0.00 0.00 37.15 0.98
2111 3957 7.065803 CCAAGTACCATATGACCTTGTTTGTAG 59.934 40.741 18.99 6.99 32.56 2.74
2116 3962 2.902705 TGACCTTGTTTGTAGCGAGT 57.097 45.000 0.00 0.00 0.00 4.18
2120 3966 3.391049 ACCTTGTTTGTAGCGAGTTCTC 58.609 45.455 0.00 0.00 0.00 2.87
2127 3973 2.881074 TGTAGCGAGTTCTCATGCTTC 58.119 47.619 7.32 4.33 38.82 3.86
2138 3984 7.223260 AGTTCTCATGCTTCATTCATTTCAA 57.777 32.000 0.00 0.00 0.00 2.69
2140 3986 6.203808 TCTCATGCTTCATTCATTTCAAGG 57.796 37.500 0.00 0.00 0.00 3.61
2144 3990 2.419159 GCTTCATTCATTTCAAGGGGGC 60.419 50.000 0.00 0.00 0.00 5.80
2147 3993 3.246301 TCATTCATTTCAAGGGGGCAAA 58.754 40.909 0.00 0.00 0.00 3.68
2148 3994 3.261390 TCATTCATTTCAAGGGGGCAAAG 59.739 43.478 0.00 0.00 0.00 2.77
2164 4010 3.232213 CAAAGATGCTGCTGATGCTTT 57.768 42.857 0.00 1.13 40.48 3.51
2209 4055 2.614829 ATGACCCGTCTAATTTCCCG 57.385 50.000 0.00 0.00 0.00 5.14
2214 4060 1.813786 CCCGTCTAATTTCCCGCAAAA 59.186 47.619 0.00 0.00 0.00 2.44
2215 4061 2.229302 CCCGTCTAATTTCCCGCAAAAA 59.771 45.455 0.00 0.00 0.00 1.94
2310 4625 7.278868 CCATTTGGTAATATTATCTCTCCTCGC 59.721 40.741 7.25 0.00 0.00 5.03
2332 4647 4.980434 GCACATTATTTCATCCTGCATGAC 59.020 41.667 0.00 0.00 41.56 3.06
2334 4649 6.016860 GCACATTATTTCATCCTGCATGACTA 60.017 38.462 0.00 0.00 41.56 2.59
2382 4697 9.807649 GCCTAAAATATGTCACATTTTCTTCAT 57.192 29.630 5.10 0.00 36.99 2.57
2389 4704 7.718272 ATGTCACATTTTCTTCATGGTTTTG 57.282 32.000 0.00 0.00 0.00 2.44
2390 4705 6.047870 TGTCACATTTTCTTCATGGTTTTGG 58.952 36.000 0.00 0.00 0.00 3.28
2391 4706 6.048509 GTCACATTTTCTTCATGGTTTTGGT 58.951 36.000 0.00 0.00 0.00 3.67
2392 4707 6.018832 GTCACATTTTCTTCATGGTTTTGGTG 60.019 38.462 0.00 0.00 0.00 4.17
2393 4708 6.047870 CACATTTTCTTCATGGTTTTGGTGA 58.952 36.000 0.00 0.00 0.00 4.02
2394 4709 6.538021 CACATTTTCTTCATGGTTTTGGTGAA 59.462 34.615 0.00 0.00 0.00 3.18
2395 4710 7.227116 CACATTTTCTTCATGGTTTTGGTGAAT 59.773 33.333 0.00 0.00 32.05 2.57
2396 4711 7.227116 ACATTTTCTTCATGGTTTTGGTGAATG 59.773 33.333 0.00 0.00 32.05 2.67
2397 4712 4.870123 TCTTCATGGTTTTGGTGAATGG 57.130 40.909 0.00 0.00 32.05 3.16
2398 4713 3.577848 TCTTCATGGTTTTGGTGAATGGG 59.422 43.478 0.00 0.00 32.05 4.00
2399 4714 3.251016 TCATGGTTTTGGTGAATGGGA 57.749 42.857 0.00 0.00 0.00 4.37
2400 4715 3.164268 TCATGGTTTTGGTGAATGGGAG 58.836 45.455 0.00 0.00 0.00 4.30
2401 4716 2.765689 TGGTTTTGGTGAATGGGAGT 57.234 45.000 0.00 0.00 0.00 3.85
2402 4717 2.315176 TGGTTTTGGTGAATGGGAGTG 58.685 47.619 0.00 0.00 0.00 3.51
2403 4718 1.618343 GGTTTTGGTGAATGGGAGTGG 59.382 52.381 0.00 0.00 0.00 4.00
2404 4719 2.593026 GTTTTGGTGAATGGGAGTGGA 58.407 47.619 0.00 0.00 0.00 4.02
2405 4720 2.558359 GTTTTGGTGAATGGGAGTGGAG 59.442 50.000 0.00 0.00 0.00 3.86
2406 4721 0.698238 TTGGTGAATGGGAGTGGAGG 59.302 55.000 0.00 0.00 0.00 4.30
2407 4722 1.077429 GGTGAATGGGAGTGGAGGC 60.077 63.158 0.00 0.00 0.00 4.70
2408 4723 1.685224 GTGAATGGGAGTGGAGGCA 59.315 57.895 0.00 0.00 0.00 4.75
2409 4724 0.257039 GTGAATGGGAGTGGAGGCAT 59.743 55.000 0.00 0.00 0.00 4.40
2410 4725 1.002069 TGAATGGGAGTGGAGGCATT 58.998 50.000 0.00 0.00 0.00 3.56
2411 4726 2.092429 GTGAATGGGAGTGGAGGCATTA 60.092 50.000 0.00 0.00 0.00 1.90
2412 4727 2.173356 TGAATGGGAGTGGAGGCATTAG 59.827 50.000 0.00 0.00 0.00 1.73
2413 4728 0.475906 ATGGGAGTGGAGGCATTAGC 59.524 55.000 0.00 0.00 41.10 3.09
2414 4729 1.227674 GGGAGTGGAGGCATTAGCG 60.228 63.158 0.00 0.00 43.41 4.26
2415 4730 1.889573 GGAGTGGAGGCATTAGCGC 60.890 63.158 0.00 0.00 43.41 5.92
2416 4731 1.144936 GAGTGGAGGCATTAGCGCT 59.855 57.895 17.26 17.26 43.41 5.92
2417 4732 0.878086 GAGTGGAGGCATTAGCGCTC 60.878 60.000 16.34 0.00 43.41 5.03
2418 4733 2.106938 TGGAGGCATTAGCGCTCG 59.893 61.111 16.34 4.86 43.41 5.03
2419 4734 2.417516 GGAGGCATTAGCGCTCGA 59.582 61.111 16.34 4.02 43.41 4.04
2420 4735 1.005630 GGAGGCATTAGCGCTCGAT 60.006 57.895 16.34 6.81 43.41 3.59
2421 4736 1.287730 GGAGGCATTAGCGCTCGATG 61.288 60.000 16.34 20.56 43.41 3.84
2422 4737 1.287730 GAGGCATTAGCGCTCGATGG 61.288 60.000 25.84 11.47 43.41 3.51
2423 4738 1.300931 GGCATTAGCGCTCGATGGA 60.301 57.895 25.84 3.71 43.41 3.41
2424 4739 0.671781 GGCATTAGCGCTCGATGGAT 60.672 55.000 25.84 7.78 43.41 3.41
2425 4740 0.718343 GCATTAGCGCTCGATGGATC 59.282 55.000 25.84 12.32 0.00 3.36
2426 4741 1.936656 GCATTAGCGCTCGATGGATCA 60.937 52.381 25.84 1.61 0.00 2.92
2427 4742 1.991264 CATTAGCGCTCGATGGATCAG 59.009 52.381 16.34 0.00 0.00 2.90
2428 4743 0.319040 TTAGCGCTCGATGGATCAGC 60.319 55.000 16.34 0.00 0.00 4.26
2429 4744 1.175347 TAGCGCTCGATGGATCAGCT 61.175 55.000 16.34 6.86 37.27 4.24
2430 4745 2.021039 GCGCTCGATGGATCAGCTC 61.021 63.158 0.00 0.00 32.51 4.09
2431 4746 1.361632 CGCTCGATGGATCAGCTCA 59.638 57.895 0.00 0.00 32.51 4.26
2432 4747 0.663867 CGCTCGATGGATCAGCTCAG 60.664 60.000 0.00 0.00 32.51 3.35
2433 4748 0.945265 GCTCGATGGATCAGCTCAGC 60.945 60.000 0.00 0.00 32.20 4.26
2434 4749 0.675083 CTCGATGGATCAGCTCAGCT 59.325 55.000 0.00 0.00 40.77 4.24
2435 4750 1.885233 CTCGATGGATCAGCTCAGCTA 59.115 52.381 0.00 0.00 36.40 3.32
2436 4751 2.492881 CTCGATGGATCAGCTCAGCTAT 59.507 50.000 0.00 0.00 36.40 2.97
2437 4752 2.230750 TCGATGGATCAGCTCAGCTATG 59.769 50.000 0.00 0.00 36.40 2.23
2438 4753 2.029200 CGATGGATCAGCTCAGCTATGT 60.029 50.000 0.00 0.00 36.40 2.29
2439 4754 3.587923 GATGGATCAGCTCAGCTATGTC 58.412 50.000 0.00 0.00 36.40 3.06
2440 4755 1.690893 TGGATCAGCTCAGCTATGTCC 59.309 52.381 14.41 14.41 36.40 4.02
2441 4756 1.001860 GGATCAGCTCAGCTATGTCCC 59.998 57.143 0.00 0.00 36.40 4.46
2442 4757 1.690893 GATCAGCTCAGCTATGTCCCA 59.309 52.381 0.00 0.00 36.40 4.37
2443 4758 1.571955 TCAGCTCAGCTATGTCCCAA 58.428 50.000 0.00 0.00 36.40 4.12
2444 4759 1.483827 TCAGCTCAGCTATGTCCCAAG 59.516 52.381 0.00 0.00 36.40 3.61
2445 4760 0.179936 AGCTCAGCTATGTCCCAAGC 59.820 55.000 0.00 0.00 36.99 4.01
2453 4768 3.142174 GCTATGTCCCAAGCTGTAATCC 58.858 50.000 0.00 0.00 35.80 3.01
2454 4769 2.332063 ATGTCCCAAGCTGTAATCCG 57.668 50.000 0.00 0.00 0.00 4.18
2455 4770 1.271856 TGTCCCAAGCTGTAATCCGA 58.728 50.000 0.00 0.00 0.00 4.55
2456 4771 1.207089 TGTCCCAAGCTGTAATCCGAG 59.793 52.381 0.00 0.00 0.00 4.63
2457 4772 1.480954 GTCCCAAGCTGTAATCCGAGA 59.519 52.381 0.00 0.00 0.00 4.04
2458 4773 1.757118 TCCCAAGCTGTAATCCGAGAG 59.243 52.381 0.00 0.00 0.00 3.20
2459 4774 1.757118 CCCAAGCTGTAATCCGAGAGA 59.243 52.381 0.00 0.00 0.00 3.10
2460 4775 2.366916 CCCAAGCTGTAATCCGAGAGAT 59.633 50.000 0.00 0.00 36.48 2.75
2461 4776 3.574396 CCCAAGCTGTAATCCGAGAGATA 59.426 47.826 0.00 0.00 33.66 1.98
2462 4777 4.221703 CCCAAGCTGTAATCCGAGAGATAT 59.778 45.833 0.00 0.00 33.66 1.63
2463 4778 5.279708 CCCAAGCTGTAATCCGAGAGATATT 60.280 44.000 0.00 0.00 33.66 1.28
2464 4779 6.071334 CCCAAGCTGTAATCCGAGAGATATTA 60.071 42.308 0.00 0.00 33.66 0.98
2465 4780 7.364232 CCCAAGCTGTAATCCGAGAGATATTAT 60.364 40.741 0.00 0.00 33.66 1.28
2466 4781 7.704472 CCAAGCTGTAATCCGAGAGATATTATC 59.296 40.741 0.00 0.00 33.66 1.75
2467 4782 7.022055 AGCTGTAATCCGAGAGATATTATCG 57.978 40.000 0.00 0.00 40.12 2.92
2468 4783 5.683743 GCTGTAATCCGAGAGATATTATCGC 59.316 44.000 0.00 0.00 39.14 4.58
2469 4784 6.459024 GCTGTAATCCGAGAGATATTATCGCT 60.459 42.308 9.37 9.37 42.28 4.93
2470 4785 7.254829 GCTGTAATCCGAGAGATATTATCGCTA 60.255 40.741 9.56 0.00 39.60 4.26
2471 4786 8.502105 TGTAATCCGAGAGATATTATCGCTAA 57.498 34.615 9.56 0.89 39.60 3.09
2472 4787 9.121658 TGTAATCCGAGAGATATTATCGCTAAT 57.878 33.333 9.56 0.00 39.60 1.73
2476 4791 8.904099 TCCGAGAGATATTATCGCTAATATGA 57.096 34.615 14.54 4.10 39.53 2.15
2477 4792 9.338622 TCCGAGAGATATTATCGCTAATATGAA 57.661 33.333 14.54 0.00 39.53 2.57
2478 4793 9.952188 CCGAGAGATATTATCGCTAATATGAAA 57.048 33.333 14.54 0.00 39.53 2.69
2482 4797 9.482627 GAGATATTATCGCTAATATGAAAGGGG 57.517 37.037 14.54 0.00 39.53 4.79
2483 4798 9.213777 AGATATTATCGCTAATATGAAAGGGGA 57.786 33.333 14.54 0.00 39.53 4.81
2484 4799 9.482627 GATATTATCGCTAATATGAAAGGGGAG 57.517 37.037 14.54 0.00 39.53 4.30
2485 4800 6.681729 TTATCGCTAATATGAAAGGGGAGT 57.318 37.500 0.00 0.00 0.00 3.85
2486 4801 4.336889 TCGCTAATATGAAAGGGGAGTG 57.663 45.455 0.00 0.00 0.00 3.51
2487 4802 2.808543 CGCTAATATGAAAGGGGAGTGC 59.191 50.000 0.00 0.00 0.00 4.40
2488 4803 3.495100 CGCTAATATGAAAGGGGAGTGCT 60.495 47.826 0.00 0.00 0.00 4.40
2489 4804 4.464947 GCTAATATGAAAGGGGAGTGCTT 58.535 43.478 0.00 0.00 0.00 3.91
2490 4805 4.517075 GCTAATATGAAAGGGGAGTGCTTC 59.483 45.833 0.00 0.00 0.00 3.86
2491 4806 2.691409 TATGAAAGGGGAGTGCTTCG 57.309 50.000 0.00 0.00 0.00 3.79
2492 4807 0.035056 ATGAAAGGGGAGTGCTTCGG 60.035 55.000 0.00 0.00 0.00 4.30
2493 4808 1.375326 GAAAGGGGAGTGCTTCGGT 59.625 57.895 0.00 0.00 0.00 4.69
2494 4809 0.611714 GAAAGGGGAGTGCTTCGGTA 59.388 55.000 0.00 0.00 0.00 4.02
2495 4810 0.323957 AAAGGGGAGTGCTTCGGTAC 59.676 55.000 0.00 0.00 0.00 3.34
2496 4811 0.834687 AAGGGGAGTGCTTCGGTACA 60.835 55.000 0.00 0.00 32.93 2.90
2497 4812 0.834687 AGGGGAGTGCTTCGGTACAA 60.835 55.000 0.00 0.00 32.93 2.41
2498 4813 0.672711 GGGGAGTGCTTCGGTACAAC 60.673 60.000 0.00 0.00 32.93 3.32
2499 4814 0.672711 GGGAGTGCTTCGGTACAACC 60.673 60.000 0.00 0.00 32.93 3.77
2500 4815 0.672711 GGAGTGCTTCGGTACAACCC 60.673 60.000 0.00 0.00 33.75 4.11
2501 4816 0.672711 GAGTGCTTCGGTACAACCCC 60.673 60.000 0.00 0.00 33.75 4.95
2502 4817 1.673337 GTGCTTCGGTACAACCCCC 60.673 63.158 0.00 0.00 33.75 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.583442 CTAGGCCCTCCCTCCCCC 62.583 77.778 0.00 0.00 44.96 5.40
68 69 3.449126 TCTAGGCCCTCCCTCCCC 61.449 72.222 0.00 0.00 44.96 4.81
69 70 2.202899 CTCTAGGCCCTCCCTCCC 59.797 72.222 0.00 0.00 44.96 4.30
70 71 2.202899 CCTCTAGGCCCTCCCTCC 59.797 72.222 0.00 0.00 44.96 4.30
82 83 4.862447 TAGCCGCCGTCGCCTCTA 62.862 66.667 0.00 0.00 0.00 2.43
130 131 1.659954 CTAGATCAGCCGCACTCGC 60.660 63.158 0.00 0.00 0.00 5.03
131 132 1.007964 CCTAGATCAGCCGCACTCG 60.008 63.158 0.00 0.00 0.00 4.18
132 133 1.365633 CCCTAGATCAGCCGCACTC 59.634 63.158 0.00 0.00 0.00 3.51
133 134 0.106167 TACCCTAGATCAGCCGCACT 60.106 55.000 0.00 0.00 0.00 4.40
134 135 0.969894 ATACCCTAGATCAGCCGCAC 59.030 55.000 0.00 0.00 0.00 5.34
135 136 1.257743 GATACCCTAGATCAGCCGCA 58.742 55.000 0.00 0.00 0.00 5.69
136 137 1.067495 GTGATACCCTAGATCAGCCGC 60.067 57.143 0.00 0.00 34.02 6.53
137 138 1.200252 CGTGATACCCTAGATCAGCCG 59.800 57.143 0.00 0.00 34.02 5.52
138 139 1.067495 GCGTGATACCCTAGATCAGCC 60.067 57.143 0.00 0.00 34.02 4.85
139 140 1.067495 GGCGTGATACCCTAGATCAGC 60.067 57.143 0.00 0.00 34.02 4.26
140 141 2.239400 TGGCGTGATACCCTAGATCAG 58.761 52.381 0.00 0.00 34.02 2.90
141 142 2.375014 TGGCGTGATACCCTAGATCA 57.625 50.000 0.00 0.00 0.00 2.92
142 143 2.610727 GCTTGGCGTGATACCCTAGATC 60.611 54.545 0.00 0.00 0.00 2.75
143 144 1.344763 GCTTGGCGTGATACCCTAGAT 59.655 52.381 0.00 0.00 0.00 1.98
144 145 0.750850 GCTTGGCGTGATACCCTAGA 59.249 55.000 0.00 0.00 0.00 2.43
145 146 3.290776 GCTTGGCGTGATACCCTAG 57.709 57.895 0.00 0.00 0.00 3.02
167 168 4.615834 GTAGCTCTCGCCGCGGAG 62.616 72.222 33.48 28.60 36.60 4.63
169 170 4.615834 GAGTAGCTCTCGCCGCGG 62.616 72.222 24.05 24.05 36.60 6.46
170 171 3.187699 ATGAGTAGCTCTCGCCGCG 62.188 63.158 6.39 6.39 45.46 6.46
171 172 1.659954 CATGAGTAGCTCTCGCCGC 60.660 63.158 0.00 0.00 45.46 6.53
172 173 1.007964 CCATGAGTAGCTCTCGCCG 60.008 63.158 0.00 0.00 45.46 6.46
173 174 1.365633 CCCATGAGTAGCTCTCGCC 59.634 63.158 0.00 0.00 45.46 5.54
174 175 1.300542 GCCCATGAGTAGCTCTCGC 60.301 63.158 0.00 0.00 45.46 5.03
175 176 1.007964 CGCCCATGAGTAGCTCTCG 60.008 63.158 0.00 0.00 45.46 4.04
176 177 0.249238 CACGCCCATGAGTAGCTCTC 60.249 60.000 0.00 0.00 43.03 3.20
177 178 0.972983 ACACGCCCATGAGTAGCTCT 60.973 55.000 0.00 0.00 0.00 4.09
178 179 0.744874 TACACGCCCATGAGTAGCTC 59.255 55.000 0.00 0.00 0.00 4.09
179 180 1.414158 ATACACGCCCATGAGTAGCT 58.586 50.000 0.00 0.00 0.00 3.32
180 181 3.380479 TTATACACGCCCATGAGTAGC 57.620 47.619 0.00 0.00 0.00 3.58
181 182 7.921214 CCTATATTTATACACGCCCATGAGTAG 59.079 40.741 0.00 0.00 0.00 2.57
182 183 7.398047 ACCTATATTTATACACGCCCATGAGTA 59.602 37.037 0.00 0.00 0.00 2.59
183 184 6.212791 ACCTATATTTATACACGCCCATGAGT 59.787 38.462 0.00 0.00 0.00 3.41
184 185 6.640518 ACCTATATTTATACACGCCCATGAG 58.359 40.000 0.00 0.00 0.00 2.90
185 186 6.439375 AGACCTATATTTATACACGCCCATGA 59.561 38.462 0.00 0.00 0.00 3.07
186 187 6.640518 AGACCTATATTTATACACGCCCATG 58.359 40.000 0.00 0.00 0.00 3.66
187 188 6.869206 AGACCTATATTTATACACGCCCAT 57.131 37.500 0.00 0.00 0.00 4.00
188 189 6.460781 CAAGACCTATATTTATACACGCCCA 58.539 40.000 0.00 0.00 0.00 5.36
189 190 5.350640 GCAAGACCTATATTTATACACGCCC 59.649 44.000 0.00 0.00 0.00 6.13
190 191 5.350640 GGCAAGACCTATATTTATACACGCC 59.649 44.000 0.00 0.00 34.51 5.68
191 192 6.404712 GGCAAGACCTATATTTATACACGC 57.595 41.667 0.00 0.00 34.51 5.34
201 202 9.595955 ACATTAGCATGCAGGCAAGACCTATAT 62.596 40.741 26.87 2.64 39.80 0.86
202 203 8.380791 ACATTAGCATGCAGGCAAGACCTATA 62.381 42.308 26.87 3.15 39.80 1.31
203 204 7.679500 ACATTAGCATGCAGGCAAGACCTAT 62.679 44.000 26.87 4.25 39.80 2.57
218 219 6.747280 GTGAAATTTACAGCGAACATTAGCAT 59.253 34.615 0.00 0.00 35.48 3.79
229 230 6.706055 TTGTCTCTAGTGAAATTTACAGCG 57.294 37.500 0.00 0.00 0.00 5.18
269 270 0.179089 CTTGACGCCTAGCAGAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
271 272 0.103937 ATCTTGACGCCTAGCAGAGC 59.896 55.000 0.00 0.00 0.00 4.09
282 283 5.912955 GGTTTTACCAAGTTGAATCTTGACG 59.087 40.000 3.87 0.00 45.11 4.35
323 324 8.612486 TTATCTGATGGGGTAAAACTACACTA 57.388 34.615 0.00 0.00 0.00 2.74
337 338 8.230472 AGCTGAAAATTAACTTATCTGATGGG 57.770 34.615 0.00 0.00 0.00 4.00
379 384 3.198872 GTTCAGCACTTGGGTAGATAGC 58.801 50.000 0.00 0.00 0.00 2.97
469 481 0.471191 TCCTGGTCTATGCAGGCATG 59.529 55.000 16.61 0.00 37.82 4.06
470 482 1.216064 TTCCTGGTCTATGCAGGCAT 58.784 50.000 11.94 11.94 40.19 4.40
471 483 0.991146 TTTCCTGGTCTATGCAGGCA 59.009 50.000 0.00 0.00 36.12 4.75
472 484 2.019984 CTTTTCCTGGTCTATGCAGGC 58.980 52.381 0.00 0.00 36.12 4.85
473 485 3.634397 TCTTTTCCTGGTCTATGCAGG 57.366 47.619 0.00 0.00 37.45 4.85
480 492 6.490381 GGTACAAGATTTTCTTTTCCTGGTCT 59.510 38.462 0.00 0.00 33.78 3.85
483 495 5.335661 CCGGTACAAGATTTTCTTTTCCTGG 60.336 44.000 0.00 0.00 33.78 4.45
489 501 5.185056 CCCAATCCGGTACAAGATTTTCTTT 59.815 40.000 0.00 0.00 33.78 2.52
530 554 3.947196 GGTGACATGGTGCAGATGATTAA 59.053 43.478 11.73 0.00 0.00 1.40
531 555 3.054508 TGGTGACATGGTGCAGATGATTA 60.055 43.478 11.73 0.00 33.40 1.75
599 1356 7.362660 GGGGTATAAGTAAAAAGCAGGAAGTTG 60.363 40.741 0.00 0.00 0.00 3.16
610 1367 6.316513 AGGTTGCAAGGGGTATAAGTAAAAA 58.683 36.000 0.00 0.00 0.00 1.94
611 1368 5.894653 AGGTTGCAAGGGGTATAAGTAAAA 58.105 37.500 0.00 0.00 0.00 1.52
732 1496 4.037446 TCAAAAAGTGGCTAGCATTTCGTT 59.963 37.500 18.24 5.21 0.00 3.85
820 1587 4.572389 CCACAGCCTTAGTTAGTTGCTATG 59.428 45.833 0.00 0.00 0.00 2.23
838 1605 2.630158 CTTCTGAAGCATCCTCCACAG 58.370 52.381 4.20 0.00 0.00 3.66
872 1639 1.162698 CTGTGTCATGGAGCAAGGTG 58.837 55.000 0.00 0.00 0.00 4.00
873 1644 0.607489 GCTGTGTCATGGAGCAAGGT 60.607 55.000 0.00 0.00 32.70 3.50
890 1664 0.824109 TTATAGCACGGCTCACAGCT 59.176 50.000 1.46 0.00 41.99 4.24
891 1665 1.594862 CTTTATAGCACGGCTCACAGC 59.405 52.381 1.46 0.00 40.44 4.40
898 1672 2.032808 GCAAGCTACTTTATAGCACGGC 60.033 50.000 8.54 5.07 42.68 5.68
900 1674 4.857871 TTGCAAGCTACTTTATAGCACG 57.142 40.909 8.54 0.43 42.68 5.34
911 1685 2.421424 CCTGTCCTGAATTGCAAGCTAC 59.579 50.000 4.94 0.00 0.00 3.58
928 1707 2.238084 TGTAGATGCAGAGGACCTGT 57.762 50.000 0.00 0.00 44.71 4.00
930 1709 2.964464 CTCATGTAGATGCAGAGGACCT 59.036 50.000 0.00 0.00 0.00 3.85
931 1710 2.697751 ACTCATGTAGATGCAGAGGACC 59.302 50.000 0.00 0.00 0.00 4.46
932 1711 3.382865 TCACTCATGTAGATGCAGAGGAC 59.617 47.826 0.00 0.00 0.00 3.85
933 1712 3.635591 TCACTCATGTAGATGCAGAGGA 58.364 45.455 0.00 0.00 0.00 3.71
934 1713 3.799574 GCTCACTCATGTAGATGCAGAGG 60.800 52.174 13.74 4.89 0.00 3.69
935 1714 3.382855 GCTCACTCATGTAGATGCAGAG 58.617 50.000 0.00 9.92 0.00 3.35
936 1715 2.102084 GGCTCACTCATGTAGATGCAGA 59.898 50.000 0.00 0.00 0.00 4.26
937 1716 2.481854 GGCTCACTCATGTAGATGCAG 58.518 52.381 0.00 0.00 0.00 4.41
938 1717 1.139654 GGGCTCACTCATGTAGATGCA 59.860 52.381 0.00 0.00 0.00 3.96
939 1718 1.415659 AGGGCTCACTCATGTAGATGC 59.584 52.381 0.00 0.00 0.00 3.91
940 1719 2.288091 CGAGGGCTCACTCATGTAGATG 60.288 54.545 0.00 0.00 37.34 2.90
941 1720 1.959985 CGAGGGCTCACTCATGTAGAT 59.040 52.381 0.00 0.00 37.34 1.98
962 1741 0.976641 TCTTCTTCTGCACCCACGAT 59.023 50.000 0.00 0.00 0.00 3.73
963 1742 0.318441 CTCTTCTTCTGCACCCACGA 59.682 55.000 0.00 0.00 0.00 4.35
964 1743 0.034059 ACTCTTCTTCTGCACCCACG 59.966 55.000 0.00 0.00 0.00 4.94
965 1744 2.354203 CCTACTCTTCTTCTGCACCCAC 60.354 54.545 0.00 0.00 0.00 4.61
1010 1789 2.545532 GGCAATCTCTCCATCTGTCTCG 60.546 54.545 0.00 0.00 0.00 4.04
1147 1986 8.861086 TCAGAAAGAACTCAGAACAGTATAACT 58.139 33.333 0.00 0.00 0.00 2.24
1154 2001 5.595885 TCAGTCAGAAAGAACTCAGAACAG 58.404 41.667 0.00 0.00 0.00 3.16
1164 2011 5.815233 ATTGTCCTCTCAGTCAGAAAGAA 57.185 39.130 0.00 0.00 0.00 2.52
1168 2015 7.106239 GGAATAAATTGTCCTCTCAGTCAGAA 58.894 38.462 0.00 0.00 0.00 3.02
1169 2016 6.352222 GGGAATAAATTGTCCTCTCAGTCAGA 60.352 42.308 3.76 0.00 34.10 3.27
1193 2044 1.399440 GCCGCTGATGCATACATATGG 59.601 52.381 7.80 0.00 36.35 2.74
1199 2050 2.980233 GGGGCCGCTGATGCATAC 60.980 66.667 13.57 0.00 39.64 2.39
1237 2088 0.179084 GGAAGATGGGATTGCGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
1251 2102 1.617018 CCATCTGCTCCACCGGAAGA 61.617 60.000 9.46 2.66 0.00 2.87
1257 2108 2.124403 CTGGCCATCTGCTCCACC 60.124 66.667 5.51 0.00 40.92 4.61
1284 2135 2.738846 ACTTGCATGAACGCTCAAGTAG 59.261 45.455 11.08 0.00 44.89 2.57
1287 2138 2.475187 GCTACTTGCATGAACGCTCAAG 60.475 50.000 6.60 1.68 42.31 3.02
1290 2141 3.885777 GCTACTTGCATGAACGCTC 57.114 52.632 6.60 0.00 42.31 5.03
1309 2282 4.532521 AGTTTCCACCTGACATAGCTACTT 59.467 41.667 0.00 0.00 0.00 2.24
1327 2317 7.118245 CCAAAAATTCAGGCCAATTAGAGTTTC 59.882 37.037 5.01 0.00 0.00 2.78
1410 2402 1.907936 CATCTCCATCTCCATCCTCCC 59.092 57.143 0.00 0.00 0.00 4.30
1457 2449 2.426023 GAGTGGTGGTCGTTGGCT 59.574 61.111 0.00 0.00 0.00 4.75
1541 2533 0.667993 AAACATGTGGAACCGTGCAG 59.332 50.000 0.00 0.00 34.36 4.41
1551 2543 8.950210 AGATATTACAGTTTGAGAAACATGTGG 58.050 33.333 0.00 0.00 43.79 4.17
1552 2544 9.979270 GAGATATTACAGTTTGAGAAACATGTG 57.021 33.333 0.00 0.00 43.79 3.21
1553 2545 9.950496 AGAGATATTACAGTTTGAGAAACATGT 57.050 29.630 0.00 0.00 43.79 3.21
1583 2583 5.821470 TCGTTCTGGTATGTTACACCAAAAA 59.179 36.000 0.00 0.00 45.27 1.94
1585 2585 4.958509 TCGTTCTGGTATGTTACACCAAA 58.041 39.130 0.00 0.00 45.27 3.28
1586 2586 4.603989 TCGTTCTGGTATGTTACACCAA 57.396 40.909 0.00 0.00 45.27 3.67
1600 2855 3.002246 TGCAAGTAACAAGCTTCGTTCTG 59.998 43.478 14.76 12.32 0.00 3.02
1628 2883 2.935201 GTGCCACAAACAAGCAATCAAA 59.065 40.909 0.00 0.00 38.45 2.69
1631 2886 1.130955 CGTGCCACAAACAAGCAATC 58.869 50.000 0.00 0.00 38.45 2.67
1633 2888 1.095600 TACGTGCCACAAACAAGCAA 58.904 45.000 0.00 0.00 38.45 3.91
1634 2889 1.095600 TTACGTGCCACAAACAAGCA 58.904 45.000 0.00 0.00 0.00 3.91
1635 2890 2.415697 ATTACGTGCCACAAACAAGC 57.584 45.000 0.00 0.00 0.00 4.01
1639 2930 6.890558 TCTAGTTTAATTACGTGCCACAAAC 58.109 36.000 0.00 2.57 0.00 2.93
1665 2956 7.147312 TGTAAATCATCTTGGTGCAGAAAAAG 58.853 34.615 0.00 0.00 0.00 2.27
1672 2963 3.689347 AGCTGTAAATCATCTTGGTGCA 58.311 40.909 0.00 0.00 0.00 4.57
1673 2964 4.708726 AAGCTGTAAATCATCTTGGTGC 57.291 40.909 0.00 0.00 32.26 5.01
1705 3212 6.135290 TGCCATAATAATCAACACAGCTTC 57.865 37.500 0.00 0.00 0.00 3.86
1774 3544 3.407424 TCTGTGGTTCCTCTGTTCATG 57.593 47.619 0.00 0.00 0.00 3.07
1789 3559 4.859798 GTCTACGAAACCAGAGATTCTGTG 59.140 45.833 3.87 3.87 42.80 3.66
1790 3560 4.082136 GGTCTACGAAACCAGAGATTCTGT 60.082 45.833 5.46 0.00 42.80 3.41
1867 3701 6.643770 TCTTGTCTTATTCTTGTTCGGTACAC 59.356 38.462 0.00 0.00 36.21 2.90
1909 3749 5.064198 CCTTCAACACGTTTCACACTTAGAA 59.936 40.000 0.00 0.00 0.00 2.10
1929 3769 6.292114 CGTAAATGAAACCAAGCAAAACCTTC 60.292 38.462 0.00 0.00 0.00 3.46
1934 3774 3.804873 GCCGTAAATGAAACCAAGCAAAA 59.195 39.130 0.00 0.00 0.00 2.44
1954 3794 3.190878 CTTGGGCATCAAGTCGCC 58.809 61.111 9.92 0.00 45.81 5.54
1978 3819 1.344191 GCTCCAGCTTCTCCTCCCAT 61.344 60.000 0.00 0.00 38.21 4.00
1999 3844 2.045438 TGGCAGCCATGTAACCCG 60.045 61.111 11.22 0.00 0.00 5.28
2000 3845 2.406616 CGTGGCAGCCATGTAACCC 61.407 63.158 23.98 5.70 35.92 4.11
2029 3874 2.585247 GTCATACCTGTCGGGCGC 60.585 66.667 0.00 0.00 39.10 6.53
2032 3877 0.032130 CATCGGTCATACCTGTCGGG 59.968 60.000 0.00 0.00 35.66 5.14
2035 3880 5.061853 TCTACTACATCGGTCATACCTGTC 58.938 45.833 0.00 0.00 35.66 3.51
2036 3881 5.045012 TCTACTACATCGGTCATACCTGT 57.955 43.478 0.00 0.00 35.66 4.00
2037 3882 6.039493 AGTTTCTACTACATCGGTCATACCTG 59.961 42.308 0.00 0.00 31.71 4.00
2038 3883 6.127793 AGTTTCTACTACATCGGTCATACCT 58.872 40.000 0.00 0.00 31.71 3.08
2039 3884 6.388435 AGTTTCTACTACATCGGTCATACC 57.612 41.667 0.00 0.00 31.21 2.73
2040 3885 6.134730 CGAGTTTCTACTACATCGGTCATAC 58.865 44.000 0.00 0.00 33.84 2.39
2041 3886 5.237996 CCGAGTTTCTACTACATCGGTCATA 59.762 44.000 3.37 0.00 34.85 2.15
2042 3887 4.036498 CCGAGTTTCTACTACATCGGTCAT 59.964 45.833 3.37 0.00 34.85 3.06
2043 3888 3.376234 CCGAGTTTCTACTACATCGGTCA 59.624 47.826 3.37 0.00 34.85 4.02
2061 3906 6.459161 GGCTTTTACAAATATAACCCACCGAG 60.459 42.308 0.00 0.00 0.00 4.63
2074 3919 8.466798 GTCATATGGTACTTGGCTTTTACAAAT 58.533 33.333 2.13 0.00 0.00 2.32
2089 3935 5.006358 CGCTACAAACAAGGTCATATGGTAC 59.994 44.000 2.13 0.00 0.00 3.34
2111 3957 2.674852 TGAATGAAGCATGAGAACTCGC 59.325 45.455 0.00 0.00 0.00 5.03
2116 3962 6.350696 CCCTTGAAATGAATGAAGCATGAGAA 60.351 38.462 0.00 0.00 0.00 2.87
2120 3966 4.439057 CCCCTTGAAATGAATGAAGCATG 58.561 43.478 0.00 0.00 0.00 4.06
2127 3973 3.261390 TCTTTGCCCCCTTGAAATGAATG 59.739 43.478 0.00 0.00 0.00 2.67
2144 3990 2.941453 AAGCATCAGCAGCATCTTTG 57.059 45.000 0.00 0.00 45.49 2.77
2147 3993 1.340697 TGGAAAGCATCAGCAGCATCT 60.341 47.619 0.00 0.00 45.49 2.90
2148 3994 1.100510 TGGAAAGCATCAGCAGCATC 58.899 50.000 0.00 0.00 45.49 3.91
2164 4010 2.835764 GGTAACCTGGTGTAGATGTGGA 59.164 50.000 0.00 0.00 0.00 4.02
2192 4038 0.108041 TGCGGGAAATTAGACGGGTC 60.108 55.000 0.00 0.00 0.00 4.46
2193 4039 0.325602 TTGCGGGAAATTAGACGGGT 59.674 50.000 0.00 0.00 0.00 5.28
2224 4070 2.376695 AGCATCATCATCCTTTGGGG 57.623 50.000 0.00 0.00 0.00 4.96
2225 4071 5.322754 AGAATAGCATCATCATCCTTTGGG 58.677 41.667 0.00 0.00 0.00 4.12
2226 4072 6.002082 TGAGAATAGCATCATCATCCTTTGG 58.998 40.000 0.00 0.00 0.00 3.28
2227 4073 7.228906 AGTTGAGAATAGCATCATCATCCTTTG 59.771 37.037 0.00 0.00 0.00 2.77
2228 4074 7.288560 AGTTGAGAATAGCATCATCATCCTTT 58.711 34.615 0.00 0.00 0.00 3.11
2229 4075 6.839454 AGTTGAGAATAGCATCATCATCCTT 58.161 36.000 0.00 0.00 0.00 3.36
2230 4076 6.436738 AGTTGAGAATAGCATCATCATCCT 57.563 37.500 0.00 0.00 0.00 3.24
2231 4077 8.789825 AATAGTTGAGAATAGCATCATCATCC 57.210 34.615 0.00 0.00 0.00 3.51
2287 4602 7.152645 GTGCGAGGAGAGATAATATTACCAAA 58.847 38.462 0.00 0.00 0.00 3.28
2310 4625 6.387041 AGTCATGCAGGATGAAATAATGTG 57.613 37.500 3.55 0.00 42.96 3.21
2332 4647 4.987912 ACGCAAAAACCAATCCATTTGTAG 59.012 37.500 0.00 0.00 35.68 2.74
2334 4649 3.559242 CACGCAAAAACCAATCCATTTGT 59.441 39.130 0.00 0.00 35.68 2.83
2382 4697 2.315176 CACTCCCATTCACCAAAACCA 58.685 47.619 0.00 0.00 0.00 3.67
2384 4699 2.558359 CTCCACTCCCATTCACCAAAAC 59.442 50.000 0.00 0.00 0.00 2.43
2385 4700 2.490718 CCTCCACTCCCATTCACCAAAA 60.491 50.000 0.00 0.00 0.00 2.44
2386 4701 1.075374 CCTCCACTCCCATTCACCAAA 59.925 52.381 0.00 0.00 0.00 3.28
2387 4702 0.698238 CCTCCACTCCCATTCACCAA 59.302 55.000 0.00 0.00 0.00 3.67
2388 4703 1.852157 GCCTCCACTCCCATTCACCA 61.852 60.000 0.00 0.00 0.00 4.17
2389 4704 1.077429 GCCTCCACTCCCATTCACC 60.077 63.158 0.00 0.00 0.00 4.02
2390 4705 0.257039 ATGCCTCCACTCCCATTCAC 59.743 55.000 0.00 0.00 0.00 3.18
2391 4706 1.002069 AATGCCTCCACTCCCATTCA 58.998 50.000 0.00 0.00 0.00 2.57
2392 4707 2.856222 CTAATGCCTCCACTCCCATTC 58.144 52.381 0.00 0.00 0.00 2.67
2393 4708 1.133668 GCTAATGCCTCCACTCCCATT 60.134 52.381 0.00 0.00 0.00 3.16
2394 4709 0.475906 GCTAATGCCTCCACTCCCAT 59.524 55.000 0.00 0.00 0.00 4.00
2395 4710 1.915228 GCTAATGCCTCCACTCCCA 59.085 57.895 0.00 0.00 0.00 4.37
2396 4711 1.227674 CGCTAATGCCTCCACTCCC 60.228 63.158 0.00 0.00 35.36 4.30
2397 4712 1.889573 GCGCTAATGCCTCCACTCC 60.890 63.158 0.00 0.00 35.36 3.85
2398 4713 0.878086 GAGCGCTAATGCCTCCACTC 60.878 60.000 11.50 0.00 33.42 3.51
2399 4714 1.144936 GAGCGCTAATGCCTCCACT 59.855 57.895 11.50 0.00 33.42 4.00
2400 4715 2.240500 CGAGCGCTAATGCCTCCAC 61.241 63.158 11.50 0.00 34.92 4.02
2401 4716 1.748329 ATCGAGCGCTAATGCCTCCA 61.748 55.000 11.50 0.00 34.92 3.86
2402 4717 1.005630 ATCGAGCGCTAATGCCTCC 60.006 57.895 11.50 0.00 34.92 4.30
2403 4718 1.287730 CCATCGAGCGCTAATGCCTC 61.288 60.000 21.24 3.92 34.99 4.70
2404 4719 1.301244 CCATCGAGCGCTAATGCCT 60.301 57.895 21.24 0.00 35.36 4.75
2405 4720 0.671781 ATCCATCGAGCGCTAATGCC 60.672 55.000 21.24 5.02 35.36 4.40
2406 4721 0.718343 GATCCATCGAGCGCTAATGC 59.282 55.000 21.24 5.38 0.00 3.56
2407 4722 1.991264 CTGATCCATCGAGCGCTAATG 59.009 52.381 11.50 17.34 0.00 1.90
2408 4723 1.671261 GCTGATCCATCGAGCGCTAAT 60.671 52.381 11.50 4.01 0.00 1.73
2409 4724 0.319040 GCTGATCCATCGAGCGCTAA 60.319 55.000 11.50 0.95 0.00 3.09
2410 4725 1.175347 AGCTGATCCATCGAGCGCTA 61.175 55.000 11.50 0.00 34.24 4.26
2411 4726 2.028778 GCTGATCCATCGAGCGCT 59.971 61.111 11.27 11.27 0.00 5.92
2412 4727 2.021039 GAGCTGATCCATCGAGCGC 61.021 63.158 0.00 0.00 36.63 5.92
2413 4728 0.663867 CTGAGCTGATCCATCGAGCG 60.664 60.000 0.00 0.00 36.63 5.03
2414 4729 0.945265 GCTGAGCTGATCCATCGAGC 60.945 60.000 0.00 0.00 33.85 5.03
2415 4730 0.675083 AGCTGAGCTGATCCATCGAG 59.325 55.000 5.97 0.00 37.57 4.04
2416 4731 1.986882 TAGCTGAGCTGATCCATCGA 58.013 50.000 18.79 0.00 40.10 3.59
2417 4732 2.029200 ACATAGCTGAGCTGATCCATCG 60.029 50.000 18.79 0.29 40.10 3.84
2418 4733 3.587923 GACATAGCTGAGCTGATCCATC 58.412 50.000 18.79 2.38 40.10 3.51
2419 4734 2.302445 GGACATAGCTGAGCTGATCCAT 59.698 50.000 18.79 0.00 40.10 3.41
2420 4735 1.690893 GGACATAGCTGAGCTGATCCA 59.309 52.381 18.79 0.00 40.10 3.41
2421 4736 1.001860 GGGACATAGCTGAGCTGATCC 59.998 57.143 18.79 19.16 40.10 3.36
2422 4737 1.690893 TGGGACATAGCTGAGCTGATC 59.309 52.381 18.79 11.25 40.10 2.92
2423 4738 1.798626 TGGGACATAGCTGAGCTGAT 58.201 50.000 18.79 1.40 40.10 2.90
2424 4739 1.483827 CTTGGGACATAGCTGAGCTGA 59.516 52.381 18.79 1.39 40.10 4.26
2425 4740 1.950828 CTTGGGACATAGCTGAGCTG 58.049 55.000 18.79 4.45 40.10 4.24
2426 4741 0.179936 GCTTGGGACATAGCTGAGCT 59.820 55.000 13.25 13.25 43.41 4.09
2427 4742 0.179936 AGCTTGGGACATAGCTGAGC 59.820 55.000 0.00 0.00 45.67 4.26
2432 4747 3.142174 GGATTACAGCTTGGGACATAGC 58.858 50.000 0.00 0.00 40.77 2.97
2433 4748 3.069586 TCGGATTACAGCTTGGGACATAG 59.930 47.826 0.00 0.00 39.30 2.23
2434 4749 3.035363 TCGGATTACAGCTTGGGACATA 58.965 45.455 0.00 0.00 39.30 2.29
2435 4750 1.837439 TCGGATTACAGCTTGGGACAT 59.163 47.619 0.00 0.00 39.30 3.06
2436 4751 1.207089 CTCGGATTACAGCTTGGGACA 59.793 52.381 0.00 0.00 0.00 4.02
2437 4752 1.480954 TCTCGGATTACAGCTTGGGAC 59.519 52.381 0.00 0.00 0.00 4.46
2438 4753 1.757118 CTCTCGGATTACAGCTTGGGA 59.243 52.381 0.00 0.00 0.00 4.37
2439 4754 1.757118 TCTCTCGGATTACAGCTTGGG 59.243 52.381 0.00 0.00 0.00 4.12
2440 4755 3.742433 ATCTCTCGGATTACAGCTTGG 57.258 47.619 0.00 0.00 0.00 3.61
2441 4756 7.430793 CGATAATATCTCTCGGATTACAGCTTG 59.569 40.741 0.00 0.00 35.98 4.01
2442 4757 7.476667 CGATAATATCTCTCGGATTACAGCTT 58.523 38.462 0.00 0.00 35.98 3.74
2443 4758 6.459024 GCGATAATATCTCTCGGATTACAGCT 60.459 42.308 0.00 0.00 35.98 4.24
2444 4759 5.683743 GCGATAATATCTCTCGGATTACAGC 59.316 44.000 0.00 0.00 35.98 4.40
2445 4760 7.022055 AGCGATAATATCTCTCGGATTACAG 57.978 40.000 0.00 0.00 35.98 2.74
2446 4761 8.502105 TTAGCGATAATATCTCTCGGATTACA 57.498 34.615 0.00 0.00 35.98 2.41
2450 4765 9.508642 TCATATTAGCGATAATATCTCTCGGAT 57.491 33.333 20.19 0.00 38.38 4.18
2451 4766 8.904099 TCATATTAGCGATAATATCTCTCGGA 57.096 34.615 20.19 12.13 32.09 4.55
2452 4767 9.952188 TTTCATATTAGCGATAATATCTCTCGG 57.048 33.333 20.19 10.31 32.09 4.63
2456 4771 9.482627 CCCCTTTCATATTAGCGATAATATCTC 57.517 37.037 20.19 0.00 32.09 2.75
2457 4772 9.213777 TCCCCTTTCATATTAGCGATAATATCT 57.786 33.333 20.19 2.25 32.09 1.98
2458 4773 9.482627 CTCCCCTTTCATATTAGCGATAATATC 57.517 37.037 20.19 0.00 32.09 1.63
2459 4774 8.993424 ACTCCCCTTTCATATTAGCGATAATAT 58.007 33.333 17.92 17.92 34.06 1.28
2460 4775 8.258007 CACTCCCCTTTCATATTAGCGATAATA 58.742 37.037 14.94 14.94 0.00 0.98
2461 4776 7.106239 CACTCCCCTTTCATATTAGCGATAAT 58.894 38.462 11.17 11.17 0.00 1.28
2462 4777 6.464222 CACTCCCCTTTCATATTAGCGATAA 58.536 40.000 0.00 0.00 0.00 1.75
2463 4778 5.568825 GCACTCCCCTTTCATATTAGCGATA 60.569 44.000 0.00 0.00 0.00 2.92
2464 4779 4.804261 GCACTCCCCTTTCATATTAGCGAT 60.804 45.833 0.00 0.00 0.00 4.58
2465 4780 3.494398 GCACTCCCCTTTCATATTAGCGA 60.494 47.826 0.00 0.00 0.00 4.93
2466 4781 2.808543 GCACTCCCCTTTCATATTAGCG 59.191 50.000 0.00 0.00 0.00 4.26
2467 4782 4.092116 AGCACTCCCCTTTCATATTAGC 57.908 45.455 0.00 0.00 0.00 3.09
2468 4783 4.752101 CGAAGCACTCCCCTTTCATATTAG 59.248 45.833 0.00 0.00 0.00 1.73
2469 4784 4.444306 CCGAAGCACTCCCCTTTCATATTA 60.444 45.833 0.00 0.00 0.00 0.98
2470 4785 3.545703 CGAAGCACTCCCCTTTCATATT 58.454 45.455 0.00 0.00 0.00 1.28
2471 4786 2.158755 CCGAAGCACTCCCCTTTCATAT 60.159 50.000 0.00 0.00 0.00 1.78
2472 4787 1.209504 CCGAAGCACTCCCCTTTCATA 59.790 52.381 0.00 0.00 0.00 2.15
2473 4788 0.035056 CCGAAGCACTCCCCTTTCAT 60.035 55.000 0.00 0.00 0.00 2.57
2474 4789 1.374947 CCGAAGCACTCCCCTTTCA 59.625 57.895 0.00 0.00 0.00 2.69
2475 4790 0.611714 TACCGAAGCACTCCCCTTTC 59.388 55.000 0.00 0.00 0.00 2.62
2476 4791 0.323957 GTACCGAAGCACTCCCCTTT 59.676 55.000 0.00 0.00 0.00 3.11
2477 4792 0.834687 TGTACCGAAGCACTCCCCTT 60.835 55.000 0.00 0.00 0.00 3.95
2478 4793 0.834687 TTGTACCGAAGCACTCCCCT 60.835 55.000 0.00 0.00 0.00 4.79
2479 4794 0.672711 GTTGTACCGAAGCACTCCCC 60.673 60.000 0.00 0.00 0.00 4.81
2480 4795 0.672711 GGTTGTACCGAAGCACTCCC 60.673 60.000 0.00 0.00 0.00 4.30
2481 4796 0.672711 GGGTTGTACCGAAGCACTCC 60.673 60.000 0.00 0.00 39.83 3.85
2482 4797 0.672711 GGGGTTGTACCGAAGCACTC 60.673 60.000 0.00 0.00 39.83 3.51
2483 4798 1.373812 GGGGTTGTACCGAAGCACT 59.626 57.895 0.00 0.00 39.83 4.40
2484 4799 1.673337 GGGGGTTGTACCGAAGCAC 60.673 63.158 0.00 0.00 39.83 4.40
2485 4800 2.751688 GGGGGTTGTACCGAAGCA 59.248 61.111 0.00 0.00 39.83 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.