>input_sequence_78046
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------------------ATGCTTCAGACGAGACAGATGGAGAGATTGCCTCCACTGCACCTGGCAGTGGTGTCTCTGCT
GGGCTTCTTCTGCCTCATCCATGCTTCAAGGGCTGCGATCTCATTCCCACCTGGTAATCGTCTCATGC------------
------------------------------------------------TATCTATCTAGAGATTTAGTT--------ATA
CTGTTCTGAGTTCTTTCTGACTGAGAGGACA----ATTTATTCCCATATGTATGCATCAGCGGCCCCGAGGGTGCAGCTG
CAGAAGATCGACGCAATCCCATCTTCCGGTGGAGCAGATGGCCAGGTGATAATACTACTTGAGC-------GTTCATGCA
AG------------------------------------------------------------------------------
-------------------------------------TAGCAAGTAG---------------C--TATGTCAGGTGGAAA
CTCTAATTGGCCTGAATTTTT-GG-CATGATCACCCCAGGCCGCCGTCATAGTGGGAGAGCCCGACCACGGCGGTGTCAG
CGGGAGGATGGAGATGGAGATGGAGCTGGAGGACTACCCGGGCTCCGGAGCCAACGACCACCACTCGCCGTGGTGGCGGC
AGGAGAGGAGGAACTGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------
>chr1A_1_TraesCS1A01G394200
TCCGCCGTCCGCCGTCCGTCGGGCGAGCTTCGCTCGCCGGCCTCCTCTGGCGGCGGTGGGGAAGCAGGGGGGAGGGAGGG
CCTAGAGGCGACGGCGGCTAGGGCGCCCGAGCCGCCTCCCTGGAGGCGACGCGAGTGCGGCTGATCTAGGGTATCACGCC
AAGCGTCCTCCGCGGCGAGAGCTACTCATGGGCGTGTATAAATATAGGTCTTGCCTGCATGCTAATGTTCGCTGTAAATT
TCACTAGAGACAAACTTTGACGTTAGGATATGCTCTGCTAGGCGTCAAGATTCAACTTGGTAAAACCAACTTGGTGAGCC
TTTTAGTGTAGTTTTACCCCATCAGATAAGTTAATTTTCAGCTTAGTGGGGG----CTCACAAGCTATCTACCCAAGTGC
TGAACCCACT-ATGGGCTCAAAAT-AAAGGGACC-----AACTTTAGTTTAACTGAAGTCTGCAGCCCACGCACTAGCTG
CATGCCTGCATAGACCAGGAAAAGAAAATCTTGTACCGGATTGGGAAGAAAA------------TCCGGAGAATTAATCA
TCTGCACCATGTCACCATCCTATATCTATATGCAAGAAATTGCATGGTACACTTTTGATCCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CAACT
TCCTGCTTTTTACTTATACCCCTTGCAACCTATTCCTGACCATAATCATTCCTTTGATGCCTCCTTTTCTGCTCGGCCCT
TTTCGCGTGCGTGCC-TAGCAATTCGCCAAATTTTCA------AGCACGCGTGCCAACGAAATGCTAGCCACT---TTTT
GAGTCATAATAAAAAAGCTCATCATGTGCGCTAATGAAGCACTTAGAAAAGATGCTTAACTACTTACATAGCAACTAACT
AAGGCTGTGGAGGATGCTTCAGAAGCCTCAATCTGCAGC----ACCTTGCTCCATG---ACACAGCTGTGAGCCGTGCTA
TAAAGTAGCT-----TGCAATTCAGGACAGGTCCTCTGCATCTACATGAGTGAGCCCTCGATCGTGGGTGCAGAAGAAGA
GTAGGAACACTTGGAGAAATGCTTCAGACGAGACAGATGGAGAGATTGCCTCCACTGCACCTGGCAGTGGTGTCTCTGCT
GGGCTTCTTCTGCCTCATCCATGCTTCAAGGGCTGCGATCTCATTCCCACCTGGTAATCGTCTCATGC------------
------------------------------------------------TATCTATCTAGAGATTTAGTT--------ATA
CTGTTCTGAGTTCTTTCTGACTGAGAGGACA----ATTTATTCCCATATGTATGCATCAGCGGCCCCGAGGGTGCAGCTG
CAGAAGATCGACGCAATCCCATCTTCCGGTGGAGCAGATGGCCAGGTGATAATACTACTTGAGC-------GTTCATGCA
AG------------------------------------------------------------------------------
-------------------------------------TAGCAAGTAG---------------C--TATGTCAGGTGGAAA
CTCTAATTGGCCTGAATTTTT-GG-CATGATCACCCCAGGCCGCCGTCATAGTGGGAGAGCCCGACCACGGCGGTGTCAG
CGGGAGGATGGAGATGGAGATGGAGCTGGAGGACTACCCGGGCTCCGGAGCCAACGACCACCACTCGCCGTGGTGGCGGC
AGGAGAGGAGGAACTGAGAACATGGAGCAAAGCTGCATGTGTGTTCCTAGTGCTGCACGGTTCCAC----ATGTTTCTCA
A----ACTGTAATATCTCTACTTTTTTGGTGTAACATA-C----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CAGAACGAAGCTTGTTACTTGCAAGG
GCTTTGATTGC------------------------------------TTGTTTGTGGCACGTAATTAAACTAGAACTTTT
TCTGCACCAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GATGATTTACAGCT
TTAATATAGCAGAAGCTGTGTTGATTATTATGGCATTTTAGTTGAATAAGAAA---------------------------
-------------------------------AAAATATATCGTCATAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ATCTAAAACTCATGAACAGAGGAACCA----------------------------------------
------------------------CAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCACGGAGTCTTGTG
TGCTGATTTAAATCTATTATGTGTACCGAAC-AAGAATAAGACAAGAGTGCACAACA-----TTACATTTCTAAGTGTGA
AACGTGTTGAAGGTTTTGCTTGGTTTCATTTACGGCG-ACTTGATGCCCAAGATGGAGATGGGAGG----AGAAGCTGGA
GCTCGGGTTACATGGCTGCCACGCTTGCTTACCGCGCCCGACAGGTATGACCGATGTAGTAGAAACTCGGTGGGTTATAT
TTGTAAAA-GCCAAGTACCATATGACCTTGTTTGTAGCGAGTTCTCATGCTTCATTCATTTCAAGGGGGCAAAGATGCTG
CTGATGCTTTCCACATCTACACCAGGTTACCACCTATGACCCGTCTAATTTCCCGCAAAAAAATAATTTCCCCAAAGGAT
GATGATGCTATTCTCAAC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TATTTCAACGAAGCTGGGCGGTTAGTTGAACCCATTTGGTAATATTATCTCTCCTCGCACATTATTTCATCCT
GCATGACTACAAATGGATTGGTTTTTGCGTGCCTAAAATATGTCACATTTTCTTCATGGTTTTGGTGAATGGGAGTGGAG
GCATTAGCGCTCGATGGATCAGCTCAGCTATGTCCCAAGCTGTAATCCGAGAGATATTATCGCTAATATGAAAGGGGAGT
GCTTCGGTACAACCCCCCTA
>chr1D_184
ACTCATGAACGCTGTGGAATTC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TAGGTCTTGCCTGCGTGCTAATGTTTGCTGTAAATT
TCACTAGAGACAAACTTTGACGTTGGGATGTTCTCTGCTAGGTGTCAAGATTCAACTGGGTAAAACCAATTTTATGAGCT
TTTGAGTGC-----------ATCAGATAAGTTAA--TTCAGCTTAGTGGAGGGAGGCTCACAAACTATCTACCCAAGTGC
TGAACCCACT-ATGGGCTCAAAGT-AAAGTGACC-----AACTTTAGTTTAACTGAAGTCTGCTGCCCACGCACTGG---
-----CCGCATCGATCAGGATAAGAAAATCTTGTACCGGATTGGGAAGAAAA------------TCCGGAGAA----TCA
TCTGCACCATGTCACCATC------CTATATGCAAGAAATTGCATGGTACACTTTTGATCCCAAAGAGCATCTACAGCCG
GACTTGACAAATCCAGTCCCTCAAACGCCTGCGGATAGTGACCTCAAGGAGCTGCAGTTGGCGCTCCGGCGTTAGAAATG
GGTGACCCCTTATCCGGCGGTGTGGGGCATGGCTACTAGTGGTGGCCGACGGGGAGTGGAAAGTGGCAGCGGCGGCGGAC
GGGCGAAGGAAAATATAGAGGGGTAGGGTTTCGGTGCTGGCGGTCGGCTTAAATAGCCAAGCTAGGCACTACGCGGTCCG
CCGGAGCGGCGTCACACGGCGACTTCGGTCTGACGGAGAAGACGAGTTTCGGACCACCGGGCTTTCGGGCGATTCCGCAT
GGGACCCCAACATCAGCCCGACGTGGCGGGGGTGCCCGAGCGTCCCATATCCGCACCATATTTGGGCTGGATACAGTGGC
GAATCTAGGACGTAATTGCAGGGCAGGCTCAACTTCAAGGATACTAATTTTTTTGGTGTTGGAAGCCATTTTATGCGTTG
CACCTAACTACTAGTGTGCTGATCATTGGTGGTGTTTTTGTGTGTGGCAAATTTTGAGGGTAGGCTAGAGCCTATTGAAG
CCTATTGAGTAGAATCGCCACTGGCTGGATATGAGGGGTGTCGGTCATGCGGGCATTGGAGGCCCGTCTAATGCGCACGG
CTGGGTCGAAATTTCGTGACCGGTGGCCTGCCCAGGCGTTTGAGACGGGTTTGGGGTGCCCAGCCGTAGATGCTCTAGCT
TCCTGC--TTTACTTATACCCCTTGTAACCTATTCCTGAGCATAATCATTCCTTTGATGCCTCCTTTTCTGCTCGGCCTT
TTCCGCGCGCGTGCC-TAGCAATTCGCCGAGTTTTCAAGAAACAGCACGCGTGCCTAGGAAATGCTAGCCGCCTACTTTT
GAGTCATG---AAAAAGCTCATCATGTGAGCTAATGAAGCACTTAGAAAAGGTGCTTAACCACTTATATAGCAACTAACT
AAGGTTGTGGAGGATGCTTCAGAAGCCTCATTCTGTGGT----TCCTTGCTCCATG---A-----CTGTGTACTGTGCTA
TAAAATACAGTAGCATACAAGTCAGGTCC-----------TCTACATGAGTGAGCTCTCG----TGGGTGCAGAAGAAGA
GTAGGAACACTTGGAGAAATGCTTCAGAGGAGGCAAATGGAGAGACTGCCTGCACTGCACCTGGCAGTGGTGTCTCTGCT
CGGATTCTGCTGCCTCATCCATGCTTCAAGGGCTGCGATCTCATTCCCACCTGGTAATCGTCTCATGC------------
------------------------------------------------TATCTA------------GTT--------ATA
GTGTTCTGAGCTCT-------------GACAATTTATTTATTCTCATATATATGCATCAGCGGCCCCGAGGGTGCAGCTG
CAGGAGACCGACGCTATCCTAGCTTCCAGTGGAGCAGATGGTCAGGTGATAATAGTA-----------------------
--------------------------------------------------------------------------------
---------------------------------------GCTAGTAGCAGTTTCAGACCATAC--TATGTCAGGTGCAAA
CTCTAATTGGCCTGATTTTTT-GG-TACGATCACCCCAGGC---GGTCGTAGTGGGGGAACCCGACCGCGGCGGTGTCAG
CAGGAGGATGGAGATGCAGATGGAGGTGGAGGACTACCCGGGCTCCGGGGCCAACGACCACCACTCGCCGTGGCGGCGGC
AAGAGAGGAGGAACTGAGAACATGGAGCAAAGCTGCATGTGCGTTCCTAGTGTTGCACGGTTGTGTATGTACGTTTCTCA
A----ACTGTAATATCTCTACTCT--TGGTTTAACAAACC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AAGAACGAAGCTTGTTACTTGCAAGG
GCATTAAGATCATGTATATAAGCTATTGCTTAACTACGTATACATTATTATTCGTGGCGCATAATTAAACTAGAATGTTT
TCCTCTCTTGTGTGAGATATGTCGCCACAGCCATCACCGTGTCCTCTCCAGTCTCCTCCATCTCCATCCGGATATCAAAC
GAAGAACTTTGATGGTCTCATGGAGGATACTCTGAGATCATCATGGGCAATCATGCAAGTTTTAAGATGAACTCTAAATC
CAGCTGCGGCTCTATTTCATCACGACCGATGGGAACAGTACGCGCCGATGGGATGGGTCTGCGGGGGATGATTTGCAGCT
TTAATATGGCAAAAGCTGTGTTGATTACTATGGCATCTTATTAGTTGAAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAGGAAA
AGGATATCGTCACATCTGAAACTGATGAACAGGGTAGGAGC---------------AAAACGAAGGAAGAAGAAAA-AGA
GGCGACTCCGCTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCACGGAGTCTTGCG
TGCTGATTTAAATCTATTATATGTACCAAACAAAGAATAAGACAAGAGTGCACAACA-----TTACATGTCTAAGTGTGA
AACGTGTTCAAGGCTTTGTTTCCTTTCATTTACACCG-ACTTGATGCCCAAGATGGAGCTGGGAGGGAGGAGAAGCTGGA
GCTGAGGCTACATGGCTGCGACACTTGCTTACCACGGCC---------GACCGATGTAGTAGAAATTCGGCGGGTTATCT
TTGTAAAAGGCCAATTGCCATATGACCTTGTTTGTAACGAGCTCTTATGCTTGATTCATGTCAGG-GGGTAAT-ATGCTG
CTGATGCTTGCCACATCTACACCAGGTTACCACCTAATCGCCGTCTAATTTCCCCCAAAGC-----------------AT
GATGATGCTCTTCTCAAC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TATTTCAACGAAGCTGGGC----AGTTCAACCTAGTTGGTAATATTATCTCTCCTCGAACATTATTTCGTCTT
GCATGATTGCAAATGGATTGGTTTTT--GTGCCTAAAATATGTCTCATTTTCTTCAGGT---------------------
--------------------------------------------------------------------------------
--------------------
>chr1B_231
GCTGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AATT
TTACTAAAGACAAACTTTGACATTAGGATGTCTTCTGCTAGGTGTCAAGATTCAACTGGGTAAAACCAACTTGGTGAGCC
TTTCAGTGTAGTTTTACTCCATCAGATAAGTTAATTTTCAGCTTAGTGGGGG----CTCAGAAACTATCTACCTAAGTGC
TGAACGCACT-ACGCGCTCAAAGTAAAAGGGGCC-----AACTTTAGTTTACCTGAAGTCTGCAGGCCAC--ACTGG---
-----CTGCATCGATCAGGATAAGAAAATCCTGTACCGGATTGGCAAGAAAA------------TCCGGAGAA----TCA
TCTGCACCATGTCACCATC------CTATATGCAAGAAATTGCATGGTACACTTTTGATCCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAACT
TCCTGC--TTTACTTATACCCCTTGCGACCTATTCCTGACCATAATCATTCCTTTGATGCCTCCTCTTTTGCTCAGCCCT
TTTCGCGTGCGTGCC-TCGCAATTCGCCGAGCTTTCAAGAAATAGCACGCGTGCCTACGAAATGCTCGCCAC----TTTT
GAGTCATAATAAAAAAGCTCATCAAGTGAGGTAATGAAGCACTTGGAAAAGGTGCTTAACCACTTATATAGCAACTAACT
AAGGTTGTGGAGGATGCTTCAGAAGCCTCAGTCTGTGGT----TCCTTGCTCCATG---A-----CTCTGAACTGTGCTA
TAAAATACAGTAACATGCAATTCATGCCC-----------TCTACATGAGTGAGCCCTCG----TAGGTGCAGAAGAAGA
GTAGGAACACTTGGAGAAATGCTTCAGAGGAGACGAATGGAGAGATTGCCTGCACTGCACCTGGCAGTGGTGTCTCTGCT
AGGCTTCTTCTGCCTCATCCATGCTTCAAGGGCTGCGACTTCATTCCCACCTGGTAATCGTCTCATGC------------
------------------------------------------------TATCTA------------GTT--------ATA
GTGTTCTGAGCTCT-------------GACA----ATTTCTTCTCATATATATGCATCAGCGGCCCCGAGGGTGCCCCTG
CAGAAGACCGACGCAGTCCTAGCTTCCAGTGGAG---ATAGCCAGGTGATAATAGTATGTTAGCTATATGTGTTCATGCA
AGTACTCCCTCCGTCCGGGAATACTTGTCGAAGGAATAGATGTATCTAGACATATCTTAGTTTTAGATACATCCATTTTT
ATTCATTTCTCCGACAAGTATTTTGGGACGGAGGGAGTAGCTAGTAGCAGTTTCAGACCATACTATATGTTAGGTGCAAA
CTCTAATTGGCCTGAATTTTT-GG-CATGATCACCCCAGGCCGCCGTCGTAGTGGCAGAGCCCGACCGCGGCGGTGTCAG
CAGAAGGATAGAGAGGGAGATGGAGCTGGAGGACTACCCGGGGTCCGGGGCCAACGACCGCCACTCGCCGTGGTGGCGGC
AAGAGAGGAGGAACTGAGAACATGGAGCAAAGCTGCATGTGTGTTCCTAGTGTTGCACGGTTGTGTTTGTATGTTTCTCA
A----ACTGTAATATCTCTACTCC--TGGTGTAACATA-CTCCCTTCATTCCATAATGTAGTGCCTAATTTTTTTTTTAA
AGTCAAACCTTACAAACTTTGACCAAGTTTATTGAGAAAAACATTCACATTTTAAATGACAAACATATATTGTTAGATTC
ATCGTAAGATATATTTTCATATTTTATATATTTGACATTGTATATATAGTTTTCTCTATAAACTTGGTCAAAGTTTGTAA
AGTTTGACTTTATAAAAAATCTATAGGCACTACATTATGGAGCGGAGGGAGTACAATAACGAAGCTTGTTACTTGCAAAA
CTGTGTTAATTATTATGTCATTTTGGTTGAAAAAGAAGAGGATATGGTCACATCTAAAACTGATGAACATATACAATGTC
AAATATATAAAATATGAAAATATATCTTACGATGAATCTAACAATATATGTGTATTGTCATTTAAAATGTGAATGCTTTT
CTCAATAAACTTGGTCAAAGTTTGTAAAGTTTGACTTTATAAAAAATCTATAGGCACTACATTATGGAGCGGAGGGAGTA
CAATAACGAAGCTTGTTACTTGC---------------------------------------------------------
-----------AAAACTGTGTTAATTATTATGTCATTTTGGTTGAAAAAGAAGAGGATATGGTCACATCTAAAACTGATG
AACATATACAATGTCAAATATATAAAATATGAAAATATATCTTACGATGAATCTAACAATATATGTGTATTGTCATTTAA
AATGTGAATGTTTTTCTCAATAAACTTGGTCAAAGTTTGTAAAGTTTGACTTTATAAAAAATCTATAGGCACTACATTAT
GGAGCGGAGGGAGTACAATAACGAAGCTTGTTACTTGCAAAACTGTGTTAATTATTATGTCATTTTGGTTGAAAAAGAAG
AGGATATGGTCACATCTAAAACTGATGAACAGAGAGGAACCACCAGGGTTGGGGCAAAAACGAAGGAAGAAGAAAACAGA
TGCGACTCCGCTGGGGATGGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCACGGAGTCTTGCG
TGCTGATTTAAATCTATTGTTTATGCAGAAC-AGTAATAAGACAAGAGTGCACAACACTACATTACATGTCTAAGTGTGA
CACGTGTTCAAGGCTTTACTTGGTTTCATTTACATCGAACTTGATGCCCAAGATGGAGCTGC----GAGGAGAAGTTGGA
GCTGAGGTTACATGGCTGCGACACTTGCTTACCACGGCC---------GACCGATGTAGTAGGAATTCGGTGGGTATCTT
TGTAAAAA-GCCAATTACCATATGACCTTGTTTGTAACGAGCTCTTATGCTTGATTCATTTCAGGTGGGTAAT-ATGCTG
CTGATGCTTGACACGTCTACACCAGGTTACCACCTATCGCCCGTCTAATTCCCCCAA-----------------------
-------CTATTCTCAACTACTCCCTCCGTTCCTAAATATAAGGCCTCCTTTGGTTTGGAGGAATTTCATGGGAATTCTA
GAAGATAGGATTCTTATAGGATTTTTTTCTTTAGAGCCCTTTGGTTCATAGGAATGGATTCCTATTCCTATATAGGATTG
GTTCCTATCCTCCACATTTCATAGGAAAATAAAAATGAGCCTAGACTCAATGGAAAAATTCCTTTGGTGTCAACCAAATG
ACATCTTGTTTCCTATTCCTACTCATAGGATTTGAGATACATGTCATCTCATTTCCTACAAGATTCCTATTCCTACGATA
ATCCTATCCTATGAACCAAAAGAGGCCTAAGTCTTTGTAGAGATTCCACTATGAACCACATACGGATATATATAGATGCA
TTTTAAGTGTAGATTCATTTATTTTGCTTCATATGTAGTCCGCCTAGTAGAATCCCTACAAAGACTTATATTTAGGAACG
GAGGGAGTATTTCAATGAAGCTGGGCGGTTAGTTGAACCCAG-TGGTAATATTATCTCTCCTCGAACATTATTTTATCCT
GCATGATTGCAAATGGATTGGTTTTTGCGTGCCTAAAATATGTCACATTTTCTTCTGGT---------------------
--------------------------------------------------------------------------------
--------------------
>chr5B_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACTAGAGACAAACTTTGACGTTAGGATGTCCTCTGCTAGGTGTCGAGGTTCAACTGGGCAAAACCAACTTGATGAGCT
TTTGAGTGCAATTTTATTTGATCAGATAAGTTAA--TTCAGCTTAGTGGAGG----CTCACAAACTATCTACCTAAGTGC
TGAAGCCACTCATGAGCTCAAAAT-AAAGGGTCC-----AACTTTAGTTTACTTGAAGTCTGAAGCCCGC--ACTGG---
-----CTGCATCGATCAGGATAAGAACATCTGGTACCGGATTGGAAGAAAAA------------TCTTCAG----AATCA
TTTGCACCATGTCACCATC------CTATATGCAAGAAATTGCAT----------TGAGCCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAACT
TTCTGC--TTTACTTTTACC----------TATTCCTGGCCGT-ATCATTCCTTT-------------TTGTTCGCCCCT
TTTCGCGTGCTTGCCTTAGCAATTCGCCGAGTTTTCAAGAAACAGCACGCATGCCTACGAAATGCTAGCCACCTCCTTTC
CAGTCAT----AAAAAGCTCATCATGTGAGCTAATGAAGCACTTGGAAAAGGTGATGAACTACTTATATAGCAACTAACT
AAGGTTGTGGAGGATGCTTCAGAGGCCTCAATCTGTGGGTGGCTCCTTGCTCCATGACAA-----CTTTTAACTGTGCTA
TAAAATAGCT-----TGCTGTTCAGGCCC-----------TCTACATGAGCCCTCCTCATGGGTGCAGA--AGAAGAAGA
GTAGGAACACTTGAAGAAATGCTTAAGAGGAGACAGATGGAGAGGTTGCCTGTGCTGCACCTGGCAGTGGTGTCTCTGCT
CGGCTTCTGCTGCCTCATCCATGCTTCAAGGGCTGCGATTTCATTCTCAGCTGGTAATCGTCTCATGC------------
------------------------------------------------CATCTA------------GAGATTTTGTCATA
TTGTTCTGC-------CTGACTGAGAGATTTTACTCCC-----------ATATGCATCAGCGGCCCCGAGGGAGCAGCTG
CAGAAGACCGAGGCAATCCCAACTTCCAGTGGAGCAGATGGTCAGGTGATGATAGTATTCTAGCTATTTGTGTTCATGCA
AG------------------------------------------------------------------------------
-------------------------------------AAGCTAGTGGCAGTTTCGGACCATACT---------GTGCAAA
CTGTAATTGGCCTGATTTTTTTTGTTATGTTCACCCCAGGC---TGTCGTAGCGGGAGAGGTCGACTGCGGTGCTGTCAG
CAGGAGGATGGAGATGGAGATGGAGCTGGAGGACTACCCGGGCTCCGGCCCCAACGACCACCACTCGCCGTGGTGGCGGC
AGGAGAGGAGGAATTGAGAACATGGAACAAAGATGCATGTGTGTTCGTAGTGTTGCACAGTTGTGT----ATGTTTCTCA
A----ACTGTAATATCTCCACTCC--TGGTGTAACAT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AAGATCGACGCTTGTTACTTGCAAGG
GC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr5A_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACTAGAGACAAACTTTGACGTTAGGATGTTCTCTGCTAGGTGTCGAGGTTCAACTGGGTAAAGCCAACTTGATGAGCT
TTTGAGTGCAGTTTTATTTGATCAGATAAGTTGA--TTCAGCTTAGTGGAGG----CTCACAAACTATCTACCTAAGTGC
TGAGGCCACT-ATGAGCTCCAAAT-AAAGGCACTCAACAAACTTTAGTTTACTTGAAGTCTTAAGCCCAC--ACTGG---
-----CTGCATTGATCAGGATAAGAATATCCGGTACCGGATTGGAAGGAAAA---------AAATCCTCAG----AGCCA
TCTGCACCATGTCACCATC------CTATATGCAAGAAATTACAT----------TGAGCCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGCT
TTCTGC--TTTAATTTTACCCCTTGCAGCCTATTCCTGGCCATAATCATTCCTTT-------------TTGCTCGCCCCT
TTTCGCGTGCTTGCC-GAGCAATTCGCCGAGTTTTCAAGAAACAGCACGCATGCCTACGAAATGCTAGCCACCTCCTTTC
CAGTCAT----AAAAAGCTCATCATGTGAGCTAATGAAGCACTTGGAAAAGGTGATGAACTACTTATATAGCAACTAACT
AAGGTTGTGGAGGATGCTTCAGAGGCCTCATTCTGTGGGTGGCTCCTTGCTCCATGACAA-----CTTTTAACTGTGCTA
TAAAATAGCT-----TGCAGTTCAGGCCC-----------TCTACATGAGCCCTCCTCATGGTTGCAGA--AGAAGAAGA
GTAGGAGCACTTGAAGAAATGCTTAAGAGGAGACAGATGGAGAGATTGCCTGCGCTGCATCTGGCAGTGGTGTCTCTGCT
CGGCTTCTGCTGCCTCATCCATGCTTCAAGGGCTGCCATTTCATTCTCAGCTGGTAATCATCTCATGCCATCTAGAGATT
TTGTTATATTGTTCTGCCTGATTGAGAGGACGATTTTATTCCCATATGCACC----------------------------
----------------------------------------------------------AGCGGCCCCGAGGGAGCAGCTG
CAGAAGACCGACGCAATCCCAGCTTCCAGTGGAGCAGATGGTCAGGTGATGATAGTATTCCAGCTATCTGTGTTCATGCA
AG------------------------------------------------------------------------------
-------------------------------------CAGCTACTGGCAGTTTCAGACCATAC--TATGTCAGGTGCAAA
CTGTATTTGACCTGAATTTTTTGG-TATGATCACCCCAGGC---TGTCGTAGCGGGAGAGGTAGACCGCGGTGCTGTCAG
CAGGAGGATGGAGATGGAGATGCAGCTGGAGGACTACCCGGGGTCCGGCCCCAACGACCACCACTCGCCGTGGTGGCGGC
AGGAGAGGAGGAATTGAGAACATGGAGCAAATTTGCATGTGTGTTCGTAGTGTTGCACAGTTGTGT----ATGTTTCTCA
ATCAAACTGTAATA-CTCTACTCC--TGGTGTAACATA-C----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AAGATCGACGCTTGTTACTTGCAAGG
GC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr5D_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACTAGAGACAAACTTTGACGTTAGGATGTTCTCTGCTAGGTGTCGAGGTTCAACTGGGCAAAACCAACTTGATGAGCT
TTTGAGTGCAATTTTATTTGATCAGATAAGTTGA--TTCAGCTTAGTGGAGG----CTCACAAACTATCTACCTAAGTGC
TGAAGCCACT-ATGAGCTCAAAAT-AAAGGGACC-----AACTTTAGTTTGCCTGAAGTCTAAAGCCCAC--ACTGG---
-----CTGCATCGATCAGGATAAGAACATCCGGTACCGGATTGGAAGAAAAATTGGAAGAAAAATCTTCAG----AATCA
TTTGCACCATGTCACCATC------CTATATGCAAGAAATTGCAT----------TGAGTCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAACT
TTCTGC--TTTACTTATACCCCTTGCAACCTATTCCTGGCCATAATCATTCCTTT-------------TTGCTTGCCCCT
TTTCGCGTGCTTGCC-TAGCAATTCGCCGAGTTTTCAAGAAACAGCACACATGCCTACGAAATGCTAGCCACCTCCTTTC
CAGTCAT----AAAAAGCTCATCATGTGAGCTAATGAAGCACTTGGAAAAGGTGATGAACTACTTATATAGCAACTAACT
AAGGTTGTGGAGGTTGCTTCAGAGGCCTCAATCTGTGGGTGGCTCCTTGCTCCATG---A-----CTTTTAACTGTGCTA
TAAAATGGCT-----TGCAGTTCAGGCCC-----------TCTACATGAGCCCTC---ATGGTTGCAGA--AGAAGAAGA
GTAGGAGCACTTGAAGAAATGCTTAAGAGGAGACAGATGGAGAGATTGCCTGCGCTGCACCTGGCAGTGGTGTCCCTGCT
CGGCTTCTGCTGCCTCATCCATGCTTCGAGGGCTGCTATTTCATTCCCACCTGGTAATCGTCCCATGC------------
------------------------------------------------CATC----------------------------
----------------------------------------------------------AGCGGCCCCGAGGGAGCAGCTG
CAGGAGACCGAGACAATCCCAGATTCCAGTGGAGCAGATGGTCAGGTGATGATAGTATTTTGGCTATTTGTGTTCATCCA
AG------------------------------------------------------------------------------
-------------------------------------TAGCTAGTCGCAGTTTCAGACCATAC--TATGCCAGGTGCAAA
CTGTAATTGGCCTGAATTTTTTGG-TATGATCACCCCAGGT---CGTCGTAGCGGGAGAGGTCGACCGCGGTGCTGTCAG
CAAGAGGATGGAGATGGAGATGCAACTGGAGGACTACCCGGGGTCCGGCCCCAACGACCACCACTCGCCGTGGTGGCGGC
AGGAGAGGAGGAATTGAGAACATGGAGCAAATTTGCATGTGTGTTCGTAGTGTTGCACAGTTGTGT----ATGTTTCTCA
A----ACTG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>SNPs
S-S-SS-SS---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S----------S----------
-----------------------------S-S----------S--------------S----------------------
---S-------------S---------------------------------------------S----------------
---------------------------------------------------------------------------S-SSS
SSSSS------S--S-----S----------------------------------------------------SS-----
-------------------SSSSSS-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
------SS------------------------------------------------------------------------
----------------------------S-S------------------------S----------------S-------
----------------------------S----------------------S--------------S-------------
----S------------------------------SS-S----S----------------SSSSS------S-S------
----S---------------------S-SSSSSSSSSSSS--------------------SSSS----------------
----------------------------S----------------------S----------------------------
S-------------------------------------------------------------------------------
------------------------------------------------------SSSSSSSSSSSS--------------
S---------S---SS---------------------------S-----S------------------------------
-------S-------------S-----S--------------------------S--S--S-------------------
--------------------------------------------------------------------------------
-----------------------------------------S----------------------------------S---
------------------------------------------------S------------------S------------
-S----------------------------------------------S-------------------------------
----------------------------------------------------S---------SSSS--------------
----------------------S-SS------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--S--S-SSS---------------------------------------S----------S--------------S----
--SS-S-S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-------S---S----------------------------------S-----S---------------------------
-----------------------------------------S-SSS----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S----------S-SSSS----------------------------------------
------------------------------------------------------------------------------S-
--------------------S-----------------------------------------------S-----------
--------S----S-------------------SS-----------------------S---------------------
---SS--------------S--S----------S--S--SSSSSSSSS-----------------S------------S-
--------------S---------------------S----S---S------S----------S-S---S--SS------
---------S---------------------------SS---------------S----SSSSSSSSSSSSSSSSSSS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----------------------S---------------
------S-S-----------------------------------------------S-SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_581
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-CTGCACCATGTCACCATCCT-----------------------------------------------------------
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--------------------
>reverse_3877
--------------------------------------------------------------------------------
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------------------------------------CCCGACAGGTATGACCGATG------------------------
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--------------------
