Multiple sequence alignment - TraesCS1A01G389800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G389800 chr1A 100.000 3276 0 0 1 3276 557560669 557557394 0.000000e+00 6050.0
1 TraesCS1A01G389800 chr1A 100.000 1616 0 0 3948 5563 557556722 557555107 0.000000e+00 2985.0
2 TraesCS1A01G389800 chr1D 90.761 3009 192 42 279 3264 465177108 465174163 0.000000e+00 3938.0
3 TraesCS1A01G389800 chr1D 88.778 401 25 6 4366 4762 465173680 465173296 1.810000e-129 473.0
4 TraesCS1A01G389800 chr1D 84.569 499 49 19 5074 5563 465172969 465172490 2.350000e-128 470.0
5 TraesCS1A01G389800 chr1D 87.500 320 13 1 1 293 465184774 465184455 1.480000e-90 344.0
6 TraesCS1A01G389800 chr1D 88.024 167 15 3 4808 4970 465173281 465173116 5.690000e-45 193.0
7 TraesCS1A01G389800 chr1D 84.524 84 4 6 5012 5087 465173106 465173024 2.150000e-09 75.0
8 TraesCS1A01G389800 chr1B 91.302 1759 111 24 1523 3264 642073595 642071862 0.000000e+00 2362.0
9 TraesCS1A01G389800 chr1B 95.896 926 38 0 564 1489 642074515 642073590 0.000000e+00 1500.0
10 TraesCS1A01G389800 chr1B 84.592 993 70 32 4013 4970 642071781 642070837 0.000000e+00 909.0
11 TraesCS1A01G389800 chr1B 83.475 236 12 9 1 209 642074754 642074519 1.580000e-45 195.0
12 TraesCS1A01G389800 chr1B 89.583 48 3 2 5012 5059 642070827 642070782 6.020000e-05 60.2
13 TraesCS1A01G389800 chr7D 80.172 232 35 9 5150 5375 381669716 381669490 4.460000e-36 163.0
14 TraesCS1A01G389800 chr2D 79.654 231 38 7 5150 5375 502288526 502288300 2.070000e-34 158.0
15 TraesCS1A01G389800 chr2D 79.464 224 39 6 5150 5370 140368696 140368915 9.650000e-33 152.0
16 TraesCS1A01G389800 chr2D 78.125 224 42 6 5149 5369 143442182 143441963 9.720000e-28 135.0
17 TraesCS1A01G389800 chr2A 81.720 186 27 6 5150 5332 213482764 213482945 1.250000e-31 148.0
18 TraesCS1A01G389800 chr7A 81.283 187 25 8 5150 5332 368197342 368197162 5.810000e-30 143.0
19 TraesCS1A01G389800 chr4A 81.183 186 28 6 5150 5332 300275760 300275941 5.810000e-30 143.0
20 TraesCS1A01G389800 chr4A 77.578 223 43 7 5150 5370 564004418 564004635 1.630000e-25 128.0
21 TraesCS1A01G389800 chr3D 77.778 225 41 8 5150 5370 98371002 98371221 4.520000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G389800 chr1A 557555107 557560669 5562 True 4517.50 6050 100.0000 1 5563 2 chr1A.!!$R1 5562
1 TraesCS1A01G389800 chr1D 465172490 465177108 4618 True 1029.80 3938 87.3312 279 5563 5 chr1D.!!$R2 5284
2 TraesCS1A01G389800 chr1B 642070782 642074754 3972 True 1005.24 2362 88.9696 1 5059 5 chr1B.!!$R1 5058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 582 0.037975 GCCTTGGGATGCACACAAAG 60.038 55.000 5.65 3.2 41.66 2.77 F
1490 1563 1.144936 CGTCCTCCTCCTTCCATGC 59.855 63.158 0.00 0.0 0.00 4.06 F
1521 1594 0.171903 ACGTTTCATCGACCTACCCG 59.828 55.000 0.00 0.0 34.70 5.28 F
1826 1905 0.738975 TTCCGCTACTCATCAGACCG 59.261 55.000 0.00 0.0 0.00 4.79 F
2934 3023 0.632835 ACCTGAGGTCGGTGGGTATA 59.367 55.000 0.00 0.0 32.41 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1575 0.171903 CGGGTAGGTCGATGAAACGT 59.828 55.000 0.00 0.0 34.70 3.99 R
2604 2691 0.250295 TGTCTGGTTAGGCAGCACAC 60.250 55.000 0.00 0.0 32.56 3.82 R
2919 3008 0.466189 TCCGTATACCCACCGACCTC 60.466 60.000 0.00 0.0 0.00 3.85 R
3248 3345 2.073816 ACAGGTACATACAAAGCACGC 58.926 47.619 0.00 0.0 0.00 5.34 R
4635 4787 0.110554 AATTAAACACACCGCGCGAC 60.111 50.000 34.63 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 126 5.355071 TGCCATGCTGAAGACACTATTAAAG 59.645 40.000 0.00 0.00 0.00 1.85
132 160 6.295916 CGTTAGCTCTATAGGAATTCCCCAAT 60.296 42.308 21.22 14.14 36.42 3.16
152 180 7.287466 CCCCAATTCTATCCATGTTGTTTGATA 59.713 37.037 0.00 0.00 0.00 2.15
157 185 9.857656 ATTCTATCCATGTTGTTTGATATGAGT 57.142 29.630 0.00 0.00 0.00 3.41
159 187 8.485392 TCTATCCATGTTGTTTGATATGAGTGA 58.515 33.333 0.00 0.00 0.00 3.41
168 196 7.290110 TGTTTGATATGAGTGATAGGTCGAT 57.710 36.000 0.00 0.00 0.00 3.59
176 204 2.030717 AGTGATAGGTCGATCATCGTGC 60.031 50.000 7.00 1.42 41.35 5.34
177 205 1.953686 TGATAGGTCGATCATCGTGCA 59.046 47.619 7.00 0.00 41.35 4.57
179 207 1.389555 TAGGTCGATCATCGTGCAGT 58.610 50.000 7.00 0.00 41.35 4.40
192 220 0.610232 GTGCAGTGAGCTTCCCCAAT 60.610 55.000 0.00 0.00 45.94 3.16
224 252 9.982651 TCTATAATAGTGACTACAGGAATTTGC 57.017 33.333 0.00 0.00 0.00 3.68
225 253 9.764363 CTATAATAGTGACTACAGGAATTTGCA 57.236 33.333 0.00 0.00 0.00 4.08
227 255 7.944729 AATAGTGACTACAGGAATTTGCAAT 57.055 32.000 0.00 0.00 0.00 3.56
228 256 7.944729 ATAGTGACTACAGGAATTTGCAATT 57.055 32.000 0.00 0.00 0.00 2.32
229 257 6.655078 AGTGACTACAGGAATTTGCAATTT 57.345 33.333 0.00 2.47 0.00 1.82
230 258 7.054491 AGTGACTACAGGAATTTGCAATTTT 57.946 32.000 0.00 0.00 0.00 1.82
231 259 7.500141 AGTGACTACAGGAATTTGCAATTTTT 58.500 30.769 0.00 0.00 0.00 1.94
252 280 6.811253 TTTTGGTATATGTCCGCCATATTC 57.189 37.500 10.05 6.36 42.87 1.75
253 281 4.118093 TGGTATATGTCCGCCATATTCG 57.882 45.455 10.05 0.00 42.87 3.34
254 282 3.118920 TGGTATATGTCCGCCATATTCGG 60.119 47.826 10.05 6.80 42.87 4.30
255 283 2.024176 ATATGTCCGCCATATTCGGC 57.976 50.000 8.02 1.56 42.87 5.54
300 328 4.689612 ACAATATATCGTTCTGTGCCCT 57.310 40.909 0.00 0.00 0.00 5.19
305 333 7.719633 ACAATATATCGTTCTGTGCCCTAAAAT 59.280 33.333 0.00 0.00 0.00 1.82
347 375 1.568504 ACGAGAAATGGGGTAGCTCA 58.431 50.000 0.00 0.00 0.00 4.26
403 433 7.366513 TGATGTTACACATATTGGTTGTTGTG 58.633 34.615 0.00 0.00 39.27 3.33
404 434 6.944234 TGTTACACATATTGGTTGTTGTGA 57.056 33.333 8.73 0.00 41.50 3.58
428 458 3.181458 ACTTGTGTGTGGGTAGGTTGTAG 60.181 47.826 0.00 0.00 0.00 2.74
429 459 1.071071 TGTGTGTGGGTAGGTTGTAGC 59.929 52.381 0.00 0.00 0.00 3.58
456 486 4.792704 GCATCCATGTTTTTCGTTGTCTGT 60.793 41.667 0.00 0.00 0.00 3.41
458 488 3.066064 TCCATGTTTTTCGTTGTCTGTGG 59.934 43.478 0.00 0.00 0.00 4.17
459 489 3.181491 CCATGTTTTTCGTTGTCTGTGGT 60.181 43.478 0.00 0.00 0.00 4.16
493 523 1.017387 GCGAGCTTCCCCAATGTTAG 58.983 55.000 0.00 0.00 0.00 2.34
499 529 2.807676 CTTCCCCAATGTTAGCCACTT 58.192 47.619 0.00 0.00 0.00 3.16
536 566 1.813513 CTGTTTTCACATCGGAGCCT 58.186 50.000 0.00 0.00 30.39 4.58
539 569 1.200020 GTTTTCACATCGGAGCCTTGG 59.800 52.381 0.00 0.00 0.00 3.61
541 571 1.198094 TTCACATCGGAGCCTTGGGA 61.198 55.000 0.00 0.00 0.00 4.37
542 572 0.982852 TCACATCGGAGCCTTGGGAT 60.983 55.000 0.00 0.00 0.00 3.85
552 582 0.037975 GCCTTGGGATGCACACAAAG 60.038 55.000 5.65 3.20 41.66 2.77
573 603 9.153721 ACAAAGAAAATATGGTTGTATGCAATG 57.846 29.630 0.00 0.00 36.92 2.82
589 619 4.401022 TGCAATGGTATGATCCTCCAATC 58.599 43.478 5.05 0.00 34.80 2.67
610 640 7.333423 CCAATCGTCTAAAGTAGTGGAAATTGA 59.667 37.037 0.00 0.00 0.00 2.57
659 689 3.454082 GGGGATTGTCTCTGATCTGAACT 59.546 47.826 3.72 0.00 0.00 3.01
678 708 6.414732 TGAACTCCTTTTGACTCTTCTTTCA 58.585 36.000 0.00 0.00 0.00 2.69
706 736 1.202952 GGTTTGGGTCACATGGTACCA 60.203 52.381 18.99 18.99 37.51 3.25
724 754 6.481976 TGGTACCAATCGATTGCATAAACTAG 59.518 38.462 28.90 15.89 36.48 2.57
796 826 1.535462 TCAAGCTTTCGTTTAGGCAGC 59.465 47.619 0.00 0.00 0.00 5.25
900 930 2.358737 CGACACCACCCAGCTTCC 60.359 66.667 0.00 0.00 0.00 3.46
923 953 2.971901 TTTCCTCCACCTCCTTTTCC 57.028 50.000 0.00 0.00 0.00 3.13
1059 1089 1.228737 GGGGAGATCCTCCTCCTCG 60.229 68.421 12.24 0.00 44.98 4.63
1101 1131 1.994507 CAGGAGGGGCAAGAGAGCT 60.995 63.158 0.00 0.00 34.17 4.09
1195 1225 1.448893 GAAATGGCCGCGTACCAGA 60.449 57.895 20.88 1.56 41.46 3.86
1355 1385 1.481871 TAACCGGGGTGTCTGATCTC 58.518 55.000 6.32 0.00 0.00 2.75
1381 1411 7.210174 GTCAAGACATGTCTATTAGGTGCATA 58.790 38.462 28.10 4.06 39.39 3.14
1382 1412 7.383572 GTCAAGACATGTCTATTAGGTGCATAG 59.616 40.741 28.10 4.80 39.39 2.23
1403 1437 9.241317 GCATAGTTTCTGATTTGGTATGATTTG 57.759 33.333 0.00 0.00 0.00 2.32
1406 1440 8.059798 AGTTTCTGATTTGGTATGATTTGAGG 57.940 34.615 0.00 0.00 0.00 3.86
1487 1560 2.683933 GCCGTCCTCCTCCTTCCA 60.684 66.667 0.00 0.00 0.00 3.53
1488 1561 2.066999 GCCGTCCTCCTCCTTCCAT 61.067 63.158 0.00 0.00 0.00 3.41
1489 1562 1.826024 CCGTCCTCCTCCTTCCATG 59.174 63.158 0.00 0.00 0.00 3.66
1490 1563 1.144936 CGTCCTCCTCCTTCCATGC 59.855 63.158 0.00 0.00 0.00 4.06
1491 1564 1.333636 CGTCCTCCTCCTTCCATGCT 61.334 60.000 0.00 0.00 0.00 3.79
1492 1565 1.794714 GTCCTCCTCCTTCCATGCTA 58.205 55.000 0.00 0.00 0.00 3.49
1493 1566 2.119495 GTCCTCCTCCTTCCATGCTAA 58.881 52.381 0.00 0.00 0.00 3.09
1494 1567 2.119495 TCCTCCTCCTTCCATGCTAAC 58.881 52.381 0.00 0.00 0.00 2.34
1495 1568 1.839994 CCTCCTCCTTCCATGCTAACA 59.160 52.381 0.00 0.00 0.00 2.41
1496 1569 2.239654 CCTCCTCCTTCCATGCTAACAA 59.760 50.000 0.00 0.00 0.00 2.83
1497 1570 3.274288 CTCCTCCTTCCATGCTAACAAC 58.726 50.000 0.00 0.00 0.00 3.32
1498 1571 2.642311 TCCTCCTTCCATGCTAACAACA 59.358 45.455 0.00 0.00 0.00 3.33
1499 1572 2.749621 CCTCCTTCCATGCTAACAACAC 59.250 50.000 0.00 0.00 0.00 3.32
1500 1573 2.749621 CTCCTTCCATGCTAACAACACC 59.250 50.000 0.00 0.00 0.00 4.16
1501 1574 2.107378 TCCTTCCATGCTAACAACACCA 59.893 45.455 0.00 0.00 0.00 4.17
1502 1575 2.890311 CCTTCCATGCTAACAACACCAA 59.110 45.455 0.00 0.00 0.00 3.67
1503 1576 3.305335 CCTTCCATGCTAACAACACCAAC 60.305 47.826 0.00 0.00 0.00 3.77
1504 1577 1.876799 TCCATGCTAACAACACCAACG 59.123 47.619 0.00 0.00 0.00 4.10
1505 1578 1.606668 CCATGCTAACAACACCAACGT 59.393 47.619 0.00 0.00 0.00 3.99
1506 1579 2.034053 CCATGCTAACAACACCAACGTT 59.966 45.455 0.00 0.00 0.00 3.99
1507 1580 3.490078 CCATGCTAACAACACCAACGTTT 60.490 43.478 0.00 0.00 0.00 3.60
1508 1581 3.408288 TGCTAACAACACCAACGTTTC 57.592 42.857 0.00 0.00 0.00 2.78
1509 1582 2.747989 TGCTAACAACACCAACGTTTCA 59.252 40.909 0.00 0.00 0.00 2.69
1510 1583 3.378742 TGCTAACAACACCAACGTTTCAT 59.621 39.130 0.00 0.00 0.00 2.57
1511 1584 3.972502 GCTAACAACACCAACGTTTCATC 59.027 43.478 0.00 0.00 0.00 2.92
1512 1585 2.748461 ACAACACCAACGTTTCATCG 57.252 45.000 0.00 0.00 0.00 3.84
1513 1586 2.281517 ACAACACCAACGTTTCATCGA 58.718 42.857 0.00 0.00 34.70 3.59
1514 1587 2.031191 ACAACACCAACGTTTCATCGAC 59.969 45.455 0.00 0.00 34.70 4.20
1515 1588 1.223187 ACACCAACGTTTCATCGACC 58.777 50.000 0.00 0.00 34.70 4.79
1516 1589 1.202604 ACACCAACGTTTCATCGACCT 60.203 47.619 0.00 0.00 34.70 3.85
1517 1590 2.036217 ACACCAACGTTTCATCGACCTA 59.964 45.455 0.00 0.00 34.70 3.08
1518 1591 2.410730 CACCAACGTTTCATCGACCTAC 59.589 50.000 0.00 0.00 34.70 3.18
1519 1592 1.997606 CCAACGTTTCATCGACCTACC 59.002 52.381 0.00 0.00 34.70 3.18
1520 1593 1.997606 CAACGTTTCATCGACCTACCC 59.002 52.381 0.00 0.00 34.70 3.69
1521 1594 0.171903 ACGTTTCATCGACCTACCCG 59.828 55.000 0.00 0.00 34.70 5.28
1522 1595 0.171903 CGTTTCATCGACCTACCCGT 59.828 55.000 0.00 0.00 0.00 5.28
1523 1596 1.403249 CGTTTCATCGACCTACCCGTT 60.403 52.381 0.00 0.00 0.00 4.44
1524 1597 2.265683 GTTTCATCGACCTACCCGTTC 58.734 52.381 0.00 0.00 0.00 3.95
1525 1598 1.843368 TTCATCGACCTACCCGTTCT 58.157 50.000 0.00 0.00 0.00 3.01
1537 1610 5.901276 ACCTACCCGTTCTATCCAAATCTTA 59.099 40.000 0.00 0.00 0.00 2.10
1795 1868 7.555554 AGCCATGCTATACATATGATCTTTTCC 59.444 37.037 10.38 0.00 36.99 3.13
1814 1887 1.466950 CCGCACAATTTTCTTCCGCTA 59.533 47.619 0.00 0.00 0.00 4.26
1826 1905 0.738975 TTCCGCTACTCATCAGACCG 59.261 55.000 0.00 0.00 0.00 4.79
1831 1910 2.415491 CGCTACTCATCAGACCGTTCAA 60.415 50.000 0.00 0.00 0.00 2.69
1874 1953 3.322211 ACCATCCGATTTTGTGTCGTA 57.678 42.857 0.00 0.00 37.39 3.43
1883 1962 5.007039 CGATTTTGTGTCGTACTTGAATCG 58.993 41.667 15.32 15.32 38.40 3.34
1969 2048 9.489084 TCTCGTAGGTGAAATCAATTTATATGG 57.511 33.333 0.00 0.00 0.00 2.74
2080 2159 7.069702 TGTTATATACCATTGTACCGGACTCAA 59.930 37.037 9.46 10.80 0.00 3.02
2090 2169 2.685100 ACCGGACTCAACGAAATCTTC 58.315 47.619 9.46 0.00 0.00 2.87
2099 2180 8.358148 GGACTCAACGAAATCTTCTGGTATATA 58.642 37.037 0.00 0.00 0.00 0.86
2133 2214 3.671716 ACTGGGAGTTAAATTCGTCACC 58.328 45.455 0.00 0.00 0.00 4.02
2145 2226 5.607119 AATTCGTCACCAAGTGTATCAAC 57.393 39.130 0.00 0.00 34.79 3.18
2146 2227 3.034721 TCGTCACCAAGTGTATCAACC 57.965 47.619 0.00 0.00 34.79 3.77
2155 2236 5.995897 ACCAAGTGTATCAACCAAGTACTTC 59.004 40.000 4.77 0.00 0.00 3.01
2346 2433 7.335924 CGGGAAAAGTTGGACAGAAAATCTATA 59.664 37.037 0.00 0.00 0.00 1.31
2604 2691 2.079158 CTGCATATCTTATGCCCGGTG 58.921 52.381 14.95 0.00 43.94 4.94
2703 2790 3.248024 AGATATGGCGAATCCCCAACTA 58.752 45.455 0.00 0.00 35.67 2.24
2777 2865 4.201685 ACGTACGATCTAAACTGCAAATGC 60.202 41.667 24.41 0.00 42.50 3.56
2782 2870 2.603021 TCTAAACTGCAAATGCCCCAA 58.397 42.857 2.46 0.00 41.18 4.12
2865 2954 3.470709 CATGGAGCAACTACCTATGGTG 58.529 50.000 0.00 0.00 36.19 4.17
2883 2972 2.825532 GGTGCAACACATTACCCTCATT 59.174 45.455 0.00 0.00 39.98 2.57
2894 2983 1.067582 CCCTCATTCGGGTAGCGAC 59.932 63.158 0.00 0.00 39.51 5.19
2918 3007 1.694696 ACTTTGCCTCTCTTCGAACCT 59.305 47.619 0.00 0.00 0.00 3.50
2919 3008 2.072298 CTTTGCCTCTCTTCGAACCTG 58.928 52.381 0.00 0.00 0.00 4.00
2934 3023 0.632835 ACCTGAGGTCGGTGGGTATA 59.367 55.000 0.00 0.00 32.41 1.47
2936 3025 0.666913 CTGAGGTCGGTGGGTATACG 59.333 60.000 0.00 0.00 0.00 3.06
3002 3096 2.419673 TGCTGCACCAGAATTTACATCG 59.580 45.455 0.00 0.00 32.44 3.84
3090 3186 5.105997 GCATGAGATACTTTTTGTTGCTCCT 60.106 40.000 0.00 0.00 31.13 3.69
3094 3190 6.147164 TGAGATACTTTTTGTTGCTCCTTACG 59.853 38.462 0.00 0.00 31.13 3.18
3102 3198 6.476243 TTTGTTGCTCCTTACGTAATCTTC 57.524 37.500 8.76 0.16 0.00 2.87
3104 3200 5.543714 TGTTGCTCCTTACGTAATCTTCAA 58.456 37.500 8.76 8.45 0.00 2.69
3113 3209 9.079833 TCCTTACGTAATCTTCAACTAATTTCG 57.920 33.333 8.76 0.00 31.93 3.46
3114 3210 8.866956 CCTTACGTAATCTTCAACTAATTTCGT 58.133 33.333 8.76 0.00 38.99 3.85
3190 3287 7.620880 ACACAATGTATCTGTAGCCTCTTAAA 58.379 34.615 0.00 0.00 0.00 1.52
3200 3297 6.433093 TCTGTAGCCTCTTAAATGTTTTTCCC 59.567 38.462 0.00 0.00 0.00 3.97
3211 3308 9.423061 CTTAAATGTTTTTCCCACTCCTAATTG 57.577 33.333 0.00 0.00 0.00 2.32
3213 3310 3.576550 TGTTTTTCCCACTCCTAATTGCC 59.423 43.478 0.00 0.00 0.00 4.52
3237 3334 7.173390 GCCCTCTGAGTTTATTTGGTATACATC 59.827 40.741 5.01 0.00 0.00 3.06
3249 3346 8.931385 ATTTGGTATACATCAGATTTTTGTGC 57.069 30.769 5.01 0.00 0.00 4.57
3253 3350 2.664916 ACATCAGATTTTTGTGCGTGC 58.335 42.857 0.00 0.00 0.00 5.34
3264 3361 3.529634 TTGTGCGTGCTTTGTATGTAC 57.470 42.857 0.00 0.00 0.00 2.90
3265 3362 1.801771 TGTGCGTGCTTTGTATGTACC 59.198 47.619 0.00 0.00 0.00 3.34
3266 3363 2.073816 GTGCGTGCTTTGTATGTACCT 58.926 47.619 0.00 0.00 0.00 3.08
3267 3364 2.073056 TGCGTGCTTTGTATGTACCTG 58.927 47.619 0.00 0.00 0.00 4.00
3269 3366 3.255725 GCGTGCTTTGTATGTACCTGTA 58.744 45.455 0.00 0.00 0.00 2.74
3270 3367 3.061697 GCGTGCTTTGTATGTACCTGTAC 59.938 47.826 0.45 0.45 36.63 2.90
3969 4066 5.816449 ATACGATGTGTTCATGCATTTGA 57.184 34.783 0.00 0.00 34.06 2.69
3976 4073 6.528014 TGTGTTCATGCATTTGATTTCAAC 57.472 33.333 0.00 0.00 35.28 3.18
3991 4090 5.532032 TGATTTCAACATGTGTGTGTCATCT 59.468 36.000 0.00 0.00 38.92 2.90
3992 4091 6.709846 TGATTTCAACATGTGTGTGTCATCTA 59.290 34.615 0.00 0.00 38.92 1.98
3993 4092 5.922739 TTCAACATGTGTGTGTCATCTAC 57.077 39.130 0.00 0.00 38.92 2.59
3994 4093 5.213891 TCAACATGTGTGTGTCATCTACT 57.786 39.130 0.00 0.00 38.92 2.57
3995 4094 5.230182 TCAACATGTGTGTGTCATCTACTC 58.770 41.667 0.00 0.00 38.92 2.59
3996 4095 4.193826 ACATGTGTGTGTCATCTACTCC 57.806 45.455 0.00 0.00 37.14 3.85
3997 4096 3.834813 ACATGTGTGTGTCATCTACTCCT 59.165 43.478 0.00 0.00 37.14 3.69
3998 4097 4.284490 ACATGTGTGTGTCATCTACTCCTT 59.716 41.667 0.00 0.00 37.14 3.36
3999 4098 4.257267 TGTGTGTGTCATCTACTCCTTG 57.743 45.455 0.00 0.00 0.00 3.61
4000 4099 3.006859 TGTGTGTGTCATCTACTCCTTGG 59.993 47.826 0.00 0.00 0.00 3.61
4001 4100 2.567169 TGTGTGTCATCTACTCCTTGGG 59.433 50.000 0.00 0.00 0.00 4.12
4002 4101 2.832129 GTGTGTCATCTACTCCTTGGGA 59.168 50.000 0.00 0.00 0.00 4.37
4003 4102 3.452627 GTGTGTCATCTACTCCTTGGGAT 59.547 47.826 0.00 0.00 0.00 3.85
4004 4103 3.452264 TGTGTCATCTACTCCTTGGGATG 59.548 47.826 0.00 0.00 37.49 3.51
4005 4104 3.041211 TGTCATCTACTCCTTGGGATGG 58.959 50.000 0.00 0.00 36.98 3.51
4006 4105 3.309296 GTCATCTACTCCTTGGGATGGA 58.691 50.000 0.00 0.00 36.98 3.41
4010 4109 4.838307 CTCCTTGGGATGGAGGGA 57.162 61.111 2.09 0.00 45.39 4.20
4011 4110 2.537600 CTCCTTGGGATGGAGGGAG 58.462 63.158 2.09 0.00 45.39 4.30
4028 4127 9.768215 ATGGAGGGAGTATTTCTTTTGAATAAA 57.232 29.630 0.00 0.00 38.37 1.40
4030 4129 9.244292 GGAGGGAGTATTTCTTTTGAATAAAGT 57.756 33.333 0.00 0.00 38.37 2.66
4069 4168 6.261603 TCAATTCTCTGATGGTTGACATATGC 59.738 38.462 1.58 0.00 40.72 3.14
4083 4182 4.095782 TGACATATGCGGGCTTAAAGTTTC 59.904 41.667 1.58 0.00 0.00 2.78
4086 4185 1.530323 TGCGGGCTTAAAGTTTCCTC 58.470 50.000 0.00 0.00 0.00 3.71
4099 4201 4.737855 AGTTTCCTCGTGCATGTAGTAT 57.262 40.909 5.68 0.00 0.00 2.12
4101 4203 6.406692 AGTTTCCTCGTGCATGTAGTATAT 57.593 37.500 5.68 0.00 0.00 0.86
4140 4242 7.750229 ACAATAGTCTTTCTTGAGATGCAAA 57.250 32.000 0.00 0.00 35.74 3.68
4148 4250 8.292448 GTCTTTCTTGAGATGCAAAATGTCTTA 58.708 33.333 0.00 0.00 35.74 2.10
4163 4265 8.359642 CAAAATGTCTTATCCAGTTTCCTTCAA 58.640 33.333 0.00 0.00 28.60 2.69
4214 4316 9.860898 AGAAAATGCCATAAGAAATTACACTTC 57.139 29.630 0.00 0.00 0.00 3.01
4237 4339 3.955771 TTTGTCGAAAGTACCACTTGC 57.044 42.857 0.00 0.00 38.66 4.01
4241 4343 4.695396 TGTCGAAAGTACCACTTGCTTTA 58.305 39.130 0.00 0.00 39.97 1.85
4246 4348 6.073440 TCGAAAGTACCACTTGCTTTATGTTC 60.073 38.462 0.00 0.00 39.97 3.18
4256 4358 5.475564 ACTTGCTTTATGTTCCGGTTATGTT 59.524 36.000 0.00 0.00 0.00 2.71
4257 4359 5.554822 TGCTTTATGTTCCGGTTATGTTC 57.445 39.130 0.00 0.00 0.00 3.18
4264 4366 2.807392 GTTCCGGTTATGTTCGTCCAAA 59.193 45.455 0.00 0.00 0.00 3.28
4265 4367 2.415776 TCCGGTTATGTTCGTCCAAAC 58.584 47.619 0.00 0.00 0.00 2.93
4266 4368 2.144730 CCGGTTATGTTCGTCCAAACA 58.855 47.619 0.00 0.00 42.92 2.83
4268 4370 3.425625 CCGGTTATGTTCGTCCAAACATG 60.426 47.826 11.46 0.00 46.56 3.21
4269 4371 3.498082 GGTTATGTTCGTCCAAACATGC 58.502 45.455 11.46 5.46 46.56 4.06
4270 4372 3.190535 GGTTATGTTCGTCCAAACATGCT 59.809 43.478 11.46 0.00 46.56 3.79
4274 4376 1.028130 TTCGTCCAAACATGCTTGCA 58.972 45.000 3.19 0.00 0.00 4.08
4279 4381 2.029649 GTCCAAACATGCTTGCATGAGT 60.030 45.455 33.52 21.10 36.48 3.41
4292 4395 1.078709 CATGAGTGCACGGTTACTGG 58.921 55.000 12.01 0.00 0.00 4.00
4300 4403 1.745827 GCACGGTTACTGGCATGGTAT 60.746 52.381 0.00 0.00 0.00 2.73
4303 4406 4.193090 CACGGTTACTGGCATGGTATTAA 58.807 43.478 0.00 0.00 0.00 1.40
4304 4407 4.636648 CACGGTTACTGGCATGGTATTAAA 59.363 41.667 0.00 0.00 0.00 1.52
4305 4408 5.298276 CACGGTTACTGGCATGGTATTAAAT 59.702 40.000 0.00 0.00 0.00 1.40
4357 4478 6.515272 AATGTGGTGATGATGTCCTTAAAC 57.485 37.500 0.00 0.00 0.00 2.01
4369 4490 2.882761 GTCCTTAAACCCAGTCCAACAC 59.117 50.000 0.00 0.00 0.00 3.32
4370 4491 2.510382 TCCTTAAACCCAGTCCAACACA 59.490 45.455 0.00 0.00 0.00 3.72
4371 4492 3.139397 TCCTTAAACCCAGTCCAACACAT 59.861 43.478 0.00 0.00 0.00 3.21
4372 4493 3.255642 CCTTAAACCCAGTCCAACACATG 59.744 47.826 0.00 0.00 0.00 3.21
4373 4494 2.746279 AAACCCAGTCCAACACATGA 57.254 45.000 0.00 0.00 0.00 3.07
4377 4523 0.401738 CCAGTCCAACACATGACCCT 59.598 55.000 0.00 0.00 0.00 4.34
4382 4528 2.034558 GTCCAACACATGACCCTTTGTG 59.965 50.000 0.00 1.74 46.76 3.33
4385 4531 2.692557 CAACACATGACCCTTTGTGGAA 59.307 45.455 0.00 0.00 45.88 3.53
4393 4539 5.055265 TGACCCTTTGTGGAATTTACTCA 57.945 39.130 0.00 0.00 38.35 3.41
4422 4569 8.836268 ACAATCAAATTTACATTTGCTCACAT 57.164 26.923 9.10 0.00 46.28 3.21
4447 4595 9.762933 ATACAAGCTGTTAATTGTTGTGAAAAT 57.237 25.926 0.00 0.00 40.09 1.82
4448 4596 8.491331 ACAAGCTGTTAATTGTTGTGAAAATT 57.509 26.923 0.00 0.00 36.23 1.82
4553 4702 2.559440 GATGATGTGGACCTTGAGCTC 58.441 52.381 6.82 6.82 0.00 4.09
4583 4735 2.870175 TCCCACCTGGTTAAACATGTG 58.130 47.619 18.81 18.81 36.94 3.21
4593 4745 3.056607 GGTTAAACATGTGCATGCTCCTT 60.057 43.478 20.33 8.63 42.39 3.36
4623 4775 2.837498 TGGATATGATGCCACACGAAG 58.163 47.619 0.00 0.00 0.00 3.79
4624 4776 1.532868 GGATATGATGCCACACGAAGC 59.467 52.381 0.00 0.00 0.00 3.86
4625 4777 1.193203 GATATGATGCCACACGAAGCG 59.807 52.381 0.00 0.00 0.00 4.68
4626 4778 0.809636 TATGATGCCACACGAAGCGG 60.810 55.000 0.00 0.00 0.00 5.52
4627 4779 2.434185 GATGCCACACGAAGCGGA 60.434 61.111 0.00 0.00 0.00 5.54
4628 4780 2.434884 ATGCCACACGAAGCGGAG 60.435 61.111 0.00 0.00 0.00 4.63
4629 4781 2.835701 GATGCCACACGAAGCGGAGA 62.836 60.000 0.00 0.00 0.00 3.71
4630 4782 2.811317 GCCACACGAAGCGGAGAG 60.811 66.667 0.00 0.00 0.00 3.20
4687 4839 9.146984 CATATATTGGATTGTGATTGATTTGGC 57.853 33.333 0.00 0.00 0.00 4.52
4748 4900 2.819984 AAGCACACTACGGCCATGGG 62.820 60.000 15.13 0.00 0.00 4.00
4762 4914 4.156556 CGGCCATGGGTTTCAGAATATATG 59.843 45.833 15.13 0.00 0.00 1.78
4763 4915 4.463891 GGCCATGGGTTTCAGAATATATGG 59.536 45.833 15.13 0.00 37.48 2.74
4764 4916 5.649782 CCATGGGTTTCAGAATATATGGC 57.350 43.478 2.85 0.00 0.00 4.40
4765 4917 4.156556 CCATGGGTTTCAGAATATATGGCG 59.843 45.833 2.85 0.00 0.00 5.69
4766 4918 3.146066 TGGGTTTCAGAATATATGGCGC 58.854 45.455 0.00 0.00 0.00 6.53
4767 4919 3.146066 GGGTTTCAGAATATATGGCGCA 58.854 45.455 10.83 0.00 0.00 6.09
4768 4920 3.189287 GGGTTTCAGAATATATGGCGCAG 59.811 47.826 10.83 0.00 0.00 5.18
4769 4921 4.065088 GGTTTCAGAATATATGGCGCAGA 58.935 43.478 10.83 0.00 0.00 4.26
4770 4922 4.515191 GGTTTCAGAATATATGGCGCAGAA 59.485 41.667 10.83 0.00 0.00 3.02
4772 4924 6.310197 GTTTCAGAATATATGGCGCAGAATC 58.690 40.000 10.83 0.00 0.00 2.52
4775 4927 4.692155 CAGAATATATGGCGCAGAATCACA 59.308 41.667 10.83 0.00 0.00 3.58
4776 4928 5.179929 CAGAATATATGGCGCAGAATCACAA 59.820 40.000 10.83 0.00 0.00 3.33
4777 4929 5.410746 AGAATATATGGCGCAGAATCACAAG 59.589 40.000 10.83 0.00 0.00 3.16
4778 4930 1.667236 TATGGCGCAGAATCACAAGG 58.333 50.000 10.83 0.00 0.00 3.61
4786 4938 5.521735 GGCGCAGAATCACAAGGATATATAG 59.478 44.000 10.83 0.00 34.28 1.31
4799 4951 4.233053 AGGATATATAGGGCAGCTGGTCTA 59.767 45.833 17.12 3.89 0.00 2.59
4816 4968 1.133136 TCTACCTAGGCCACTGATCCC 60.133 57.143 9.30 0.00 0.00 3.85
4880 5032 6.205464 GGTACGTATATTCTGGTGCAGTACTA 59.795 42.308 0.00 0.00 34.24 1.82
4918 5070 6.405278 TCTCGATCTTAATATTGCTGGTGA 57.595 37.500 0.00 0.00 0.00 4.02
4934 5090 8.534333 TTGCTGGTGATCTTAATATCGTAATC 57.466 34.615 0.00 0.00 0.00 1.75
4939 5095 8.314021 TGGTGATCTTAATATCGTAATCATGCT 58.686 33.333 0.00 0.00 0.00 3.79
4940 5096 9.803315 GGTGATCTTAATATCGTAATCATGCTA 57.197 33.333 0.00 0.00 0.00 3.49
4966 5122 1.882623 CACTCCTGGCTCAAAAAGGTC 59.117 52.381 0.00 0.00 32.59 3.85
4970 5126 3.222603 TCCTGGCTCAAAAAGGTCTTTC 58.777 45.455 0.00 0.00 32.59 2.62
4971 5127 2.030805 CCTGGCTCAAAAAGGTCTTTCG 60.031 50.000 0.00 0.00 31.45 3.46
4973 5129 3.020984 TGGCTCAAAAAGGTCTTTCGTT 58.979 40.909 0.00 0.00 31.45 3.85
4974 5130 3.181491 TGGCTCAAAAAGGTCTTTCGTTG 60.181 43.478 0.00 0.04 31.45 4.10
4977 5133 4.862574 GCTCAAAAAGGTCTTTCGTTGTTT 59.137 37.500 0.00 0.00 31.45 2.83
4978 5134 5.220209 GCTCAAAAAGGTCTTTCGTTGTTTG 60.220 40.000 0.00 0.00 31.45 2.93
4979 5135 6.015027 TCAAAAAGGTCTTTCGTTGTTTGA 57.985 33.333 0.00 0.00 33.85 2.69
4980 5136 6.448006 TCAAAAAGGTCTTTCGTTGTTTGAA 58.552 32.000 0.00 0.00 33.64 2.69
4981 5137 6.924060 TCAAAAAGGTCTTTCGTTGTTTGAAA 59.076 30.769 0.00 0.00 33.64 2.69
4982 5138 7.438459 TCAAAAAGGTCTTTCGTTGTTTGAAAA 59.562 29.630 0.00 0.00 35.11 2.29
4983 5139 7.716768 AAAAGGTCTTTCGTTGTTTGAAAAA 57.283 28.000 0.00 0.00 35.11 1.94
5007 5163 7.976414 AAAATTCCCTATGAAATCATGTGGA 57.024 32.000 14.69 12.46 36.33 4.02
5008 5164 7.976414 AAATTCCCTATGAAATCATGTGGAA 57.024 32.000 20.96 20.96 44.18 3.53
5009 5165 7.976414 AATTCCCTATGAAATCATGTGGAAA 57.024 32.000 21.84 10.20 43.74 3.13
5010 5166 8.557304 AATTCCCTATGAAATCATGTGGAAAT 57.443 30.769 21.84 15.63 43.74 2.17
5053 5212 4.453478 ACTTTACATGCATATGCTCCGATG 59.547 41.667 27.13 22.58 42.66 3.84
5056 5215 2.810274 ACATGCATATGCTCCGATGTTC 59.190 45.455 27.13 0.00 42.66 3.18
5059 5218 4.335400 TGCATATGCTCCGATGTTCTTA 57.665 40.909 27.13 0.26 42.66 2.10
5063 5222 5.409520 GCATATGCTCCGATGTTCTTATGAA 59.590 40.000 20.64 0.00 38.21 2.57
5064 5223 6.093219 GCATATGCTCCGATGTTCTTATGAAT 59.907 38.462 20.64 0.00 38.21 2.57
5066 5225 9.322773 CATATGCTCCGATGTTCTTATGAATAT 57.677 33.333 0.94 0.94 36.85 1.28
5068 5227 8.709386 ATGCTCCGATGTTCTTATGAATATAC 57.291 34.615 1.32 0.00 34.79 1.47
5069 5228 7.097192 TGCTCCGATGTTCTTATGAATATACC 58.903 38.462 1.32 0.00 34.79 2.73
5070 5229 7.039011 TGCTCCGATGTTCTTATGAATATACCT 60.039 37.037 1.32 0.00 34.79 3.08
5071 5230 8.467598 GCTCCGATGTTCTTATGAATATACCTA 58.532 37.037 1.32 0.00 34.79 3.08
5072 5231 9.790389 CTCCGATGTTCTTATGAATATACCTAC 57.210 37.037 1.32 0.00 34.79 3.18
5073 5232 8.456471 TCCGATGTTCTTATGAATATACCTACG 58.544 37.037 1.32 1.57 34.79 3.51
5112 5342 4.587262 TCTTTTTGACCTTTTCTAAGCCCC 59.413 41.667 0.00 0.00 0.00 5.80
5113 5343 3.603965 TTTGACCTTTTCTAAGCCCCA 57.396 42.857 0.00 0.00 0.00 4.96
5119 5349 2.363359 CCTTTTCTAAGCCCCATGCATC 59.637 50.000 0.00 0.00 44.83 3.91
5134 5364 3.347077 TGCATCCATGACATGTACACA 57.653 42.857 14.26 4.79 0.00 3.72
5137 5367 4.156373 TGCATCCATGACATGTACACAAAG 59.844 41.667 14.26 0.00 0.00 2.77
5144 5379 5.029807 TGACATGTACACAAAGGAGAACA 57.970 39.130 0.00 0.00 0.00 3.18
5157 5392 6.486993 ACAAAGGAGAACAAATGTACTTCCTC 59.513 38.462 11.48 0.00 33.77 3.71
5161 5396 5.639931 GGAGAACAAATGTACTTCCTCTGTC 59.360 44.000 0.00 0.00 0.00 3.51
5162 5397 5.552178 AGAACAAATGTACTTCCTCTGTCC 58.448 41.667 0.00 0.00 0.00 4.02
5174 5409 1.133575 CCTCTGTCCGGGTGTATAGGA 60.134 57.143 0.00 0.00 0.00 2.94
5180 5415 1.958579 TCCGGGTGTATAGGACATTCG 59.041 52.381 0.00 0.00 41.14 3.34
5181 5416 1.604693 CCGGGTGTATAGGACATTCGC 60.605 57.143 0.00 0.00 41.14 4.70
5185 5420 4.495422 GGGTGTATAGGACATTCGCATAG 58.505 47.826 0.00 0.00 41.14 2.23
5186 5421 4.219944 GGGTGTATAGGACATTCGCATAGA 59.780 45.833 0.00 0.00 41.14 1.98
5258 5495 6.624352 GCATATTATTGGACATATGCGGAT 57.376 37.500 1.58 0.00 45.06 4.18
5276 5513 8.677148 ATGCGGATGTAGTTTCTAAACATATT 57.323 30.769 8.21 0.00 41.30 1.28
5277 5514 8.138365 TGCGGATGTAGTTTCTAAACATATTC 57.862 34.615 8.21 0.75 41.30 1.75
5332 5569 6.435904 AGCTAGCTAAATCATCGACCTAGAAT 59.564 38.462 17.69 0.00 0.00 2.40
5337 5574 6.862090 GCTAAATCATCGACCTAGAATTACGT 59.138 38.462 0.00 0.00 0.00 3.57
5338 5575 7.148950 GCTAAATCATCGACCTAGAATTACGTG 60.149 40.741 0.00 0.00 0.00 4.49
5339 5576 5.769484 ATCATCGACCTAGAATTACGTGT 57.231 39.130 0.00 0.00 0.00 4.49
5342 5579 7.967890 TCATCGACCTAGAATTACGTGTATA 57.032 36.000 0.00 0.00 0.00 1.47
5344 5581 6.545504 TCGACCTAGAATTACGTGTATACC 57.454 41.667 0.00 0.00 0.00 2.73
5348 5585 7.335422 CGACCTAGAATTACGTGTATACCCTAT 59.665 40.741 0.00 0.00 0.00 2.57
5359 5596 4.401022 TGTATACCCTATACACCTGGACG 58.599 47.826 0.00 0.00 44.35 4.79
5373 5610 5.163055 ACACCTGGACGGAGGTAGTATATAA 60.163 44.000 0.00 0.00 45.15 0.98
5394 5631 0.921896 ACTCATGGGATGGGTGAAGG 59.078 55.000 0.00 0.00 43.74 3.46
5396 5633 1.779092 CTCATGGGATGGGTGAAGGAT 59.221 52.381 0.00 0.00 0.00 3.24
5398 5635 0.186873 ATGGGATGGGTGAAGGATGC 59.813 55.000 0.00 0.00 0.00 3.91
5399 5636 1.213619 TGGGATGGGTGAAGGATGCA 61.214 55.000 0.00 0.00 0.00 3.96
5400 5637 0.186873 GGGATGGGTGAAGGATGCAT 59.813 55.000 0.00 0.00 0.00 3.96
5401 5638 1.425066 GGGATGGGTGAAGGATGCATA 59.575 52.381 0.00 0.00 0.00 3.14
5402 5639 2.553904 GGGATGGGTGAAGGATGCATAG 60.554 54.545 0.00 0.00 0.00 2.23
5403 5640 2.553904 GGATGGGTGAAGGATGCATAGG 60.554 54.545 0.00 0.00 0.00 2.57
5404 5641 1.595311 TGGGTGAAGGATGCATAGGT 58.405 50.000 0.00 0.00 0.00 3.08
5405 5642 2.770447 TGGGTGAAGGATGCATAGGTA 58.230 47.619 0.00 0.00 0.00 3.08
5406 5643 3.119319 TGGGTGAAGGATGCATAGGTAA 58.881 45.455 0.00 0.00 0.00 2.85
5407 5644 3.136443 TGGGTGAAGGATGCATAGGTAAG 59.864 47.826 0.00 0.00 0.00 2.34
5408 5645 3.136626 GGGTGAAGGATGCATAGGTAAGT 59.863 47.826 0.00 0.00 0.00 2.24
5409 5646 4.130118 GGTGAAGGATGCATAGGTAAGTG 58.870 47.826 0.00 0.00 0.00 3.16
5410 5647 4.384208 GGTGAAGGATGCATAGGTAAGTGT 60.384 45.833 0.00 0.00 0.00 3.55
5411 5648 5.186198 GTGAAGGATGCATAGGTAAGTGTT 58.814 41.667 0.00 0.00 0.00 3.32
5417 5654 4.202245 TGCATAGGTAAGTGTTGTCTCC 57.798 45.455 0.00 0.00 0.00 3.71
5422 5659 0.034337 GTAAGTGTTGTCTCCGGCCA 59.966 55.000 2.24 0.00 0.00 5.36
5423 5660 0.981183 TAAGTGTTGTCTCCGGCCAT 59.019 50.000 2.24 0.00 0.00 4.40
5435 5672 0.950071 CCGGCCATGGCTTTGTTTTG 60.950 55.000 34.70 14.44 41.60 2.44
5440 5677 1.598601 CCATGGCTTTGTTTTGTGCAC 59.401 47.619 10.75 10.75 0.00 4.57
5446 5683 2.741517 GCTTTGTTTTGTGCACCTTTGT 59.258 40.909 15.69 0.00 0.00 2.83
5449 5686 5.445806 GCTTTGTTTTGTGCACCTTTGTAAG 60.446 40.000 15.69 12.05 0.00 2.34
5456 5693 6.952773 TTGTGCACCTTTGTAAGTTAGATT 57.047 33.333 15.69 0.00 0.00 2.40
5466 5703 9.394477 CCTTTGTAAGTTAGATTTGTTTGTAGC 57.606 33.333 0.00 0.00 0.00 3.58
5476 5713 3.780804 TTGTTTGTAGCTAAGCTCCCA 57.219 42.857 0.00 0.00 40.44 4.37
5545 5782 8.141298 TCAAGTAAATTCCACTCTGTACCATA 57.859 34.615 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 7.817478 TCGATTTCTTTAATAGTGTCTTCAGCA 59.183 33.333 0.00 0.00 0.00 4.41
98 126 7.074507 TCCTATAGAGCTAACGATCGATTTC 57.925 40.000 24.34 11.31 0.00 2.17
132 160 9.112725 CACTCATATCAAACAACATGGATAGAA 57.887 33.333 0.00 0.00 0.00 2.10
152 180 4.075682 ACGATGATCGACCTATCACTCAT 58.924 43.478 22.88 0.00 43.74 2.90
157 185 1.953686 TGCACGATGATCGACCTATCA 59.046 47.619 22.88 6.59 43.74 2.15
159 187 1.957177 ACTGCACGATGATCGACCTAT 59.043 47.619 22.88 0.84 43.74 2.57
168 196 0.390340 GGAAGCTCACTGCACGATGA 60.390 55.000 0.00 0.00 45.94 2.92
176 204 5.420104 AGATTAAAATTGGGGAAGCTCACTG 59.580 40.000 0.00 0.00 0.00 3.66
177 205 5.583932 AGATTAAAATTGGGGAAGCTCACT 58.416 37.500 0.00 0.00 0.00 3.41
179 207 9.881773 ATTATAGATTAAAATTGGGGAAGCTCA 57.118 29.630 0.00 0.00 0.00 4.26
206 234 6.655078 AAATTGCAAATTCCTGTAGTCACT 57.345 33.333 1.71 0.00 0.00 3.41
262 290 4.738998 TTCATGTGCCGCCCCAGG 62.739 66.667 0.00 0.00 0.00 4.45
263 291 3.443045 GTTCATGTGCCGCCCCAG 61.443 66.667 0.00 0.00 0.00 4.45
264 292 3.682851 TATTGTTCATGTGCCGCCCCA 62.683 52.381 0.00 0.00 0.00 4.96
265 293 1.034838 TATTGTTCATGTGCCGCCCC 61.035 55.000 0.00 0.00 0.00 5.80
266 294 1.032014 ATATTGTTCATGTGCCGCCC 58.968 50.000 0.00 0.00 0.00 6.13
267 295 3.424829 CGATATATTGTTCATGTGCCGCC 60.425 47.826 0.00 0.00 0.00 6.13
268 296 3.186409 ACGATATATTGTTCATGTGCCGC 59.814 43.478 0.00 0.00 0.00 6.53
269 297 4.990543 ACGATATATTGTTCATGTGCCG 57.009 40.909 0.00 0.00 0.00 5.69
277 305 5.057149 AGGGCACAGAACGATATATTGTTC 58.943 41.667 28.09 28.09 46.71 3.18
323 351 5.364446 TGAGCTACCCCATTTCTCGTATTTA 59.636 40.000 0.00 0.00 0.00 1.40
337 365 6.770785 TGTGTAATATCAAATTGAGCTACCCC 59.229 38.462 1.10 0.00 0.00 4.95
391 421 4.016444 ACACAAGTCTCACAACAACCAAT 58.984 39.130 0.00 0.00 0.00 3.16
403 433 1.692519 ACCTACCCACACACAAGTCTC 59.307 52.381 0.00 0.00 0.00 3.36
404 434 1.802553 ACCTACCCACACACAAGTCT 58.197 50.000 0.00 0.00 0.00 3.24
428 458 1.349234 GAAAAACATGGATGCACCGC 58.651 50.000 0.00 0.00 42.61 5.68
429 459 1.068610 ACGAAAAACATGGATGCACCG 60.069 47.619 0.00 0.00 42.61 4.94
456 486 1.152984 CCACCACAAGAGCACACCA 60.153 57.895 0.00 0.00 0.00 4.17
458 488 2.896801 CGCCACCACAAGAGCACAC 61.897 63.158 0.00 0.00 0.00 3.82
459 489 2.591429 CGCCACCACAAGAGCACA 60.591 61.111 0.00 0.00 0.00 4.57
515 545 0.874390 GCTCCGATGTGAAAACAGCA 59.126 50.000 0.00 0.00 0.00 4.41
527 557 2.377810 TGCATCCCAAGGCTCCGAT 61.378 57.895 0.00 0.00 32.14 4.18
536 566 4.686191 ATTTTCTTTGTGTGCATCCCAA 57.314 36.364 0.00 0.00 0.00 4.12
539 569 5.723295 ACCATATTTTCTTTGTGTGCATCC 58.277 37.500 0.00 0.00 0.00 3.51
541 571 6.523840 ACAACCATATTTTCTTTGTGTGCAT 58.476 32.000 0.00 0.00 0.00 3.96
542 572 5.911752 ACAACCATATTTTCTTTGTGTGCA 58.088 33.333 0.00 0.00 0.00 4.57
552 582 9.195411 CATACCATTGCATACAACCATATTTTC 57.805 33.333 0.00 0.00 38.99 2.29
573 603 5.723672 TTAGACGATTGGAGGATCATACC 57.276 43.478 0.00 0.00 36.25 2.73
589 619 7.653767 AGTTCAATTTCCACTACTTTAGACG 57.346 36.000 0.00 0.00 0.00 4.18
633 663 5.471424 TCAGATCAGAGACAATCCCCTAAT 58.529 41.667 0.00 0.00 0.00 1.73
659 689 9.354673 ACATTAATGAAAGAAGAGTCAAAAGGA 57.645 29.630 22.16 0.00 0.00 3.36
706 736 6.260714 TGATGTGCTAGTTTATGCAATCGATT 59.739 34.615 4.39 4.39 41.10 3.34
724 754 2.352821 TGCCATGGCCTTGATGTGC 61.353 57.895 33.44 14.16 41.09 4.57
900 930 1.076438 AAGGAGGTGGAGGAAAAGGG 58.924 55.000 0.00 0.00 0.00 3.95
1059 1089 3.897320 GATCCCGACCCCGACGAC 61.897 72.222 0.00 0.00 38.22 4.34
1074 1104 4.499116 CCCCTCCTGGACCCCGAT 62.499 72.222 0.00 0.00 35.39 4.18
1146 1176 0.037046 TGATCTTCTCAAGCTGCGCA 60.037 50.000 10.98 10.98 0.00 6.09
1195 1225 1.977544 CGACGAGAGGAGGGTGGTT 60.978 63.158 0.00 0.00 0.00 3.67
1332 1362 0.616371 TCAGACACCCCGGTTAATGG 59.384 55.000 0.00 0.00 0.00 3.16
1355 1385 4.504461 GCACCTAATAGACATGTCTTGACG 59.496 45.833 32.14 17.99 40.93 4.35
1381 1411 7.890127 TCCTCAAATCATACCAAATCAGAAACT 59.110 33.333 0.00 0.00 0.00 2.66
1382 1412 8.055279 TCCTCAAATCATACCAAATCAGAAAC 57.945 34.615 0.00 0.00 0.00 2.78
1403 1437 4.260948 GCTCGATCAACCAATCAAATCCTC 60.261 45.833 0.00 0.00 0.00 3.71
1404 1438 3.629398 GCTCGATCAACCAATCAAATCCT 59.371 43.478 0.00 0.00 0.00 3.24
1406 1440 4.497006 CCTGCTCGATCAACCAATCAAATC 60.497 45.833 0.00 0.00 0.00 2.17
1487 1560 3.378742 TGAAACGTTGGTGTTGTTAGCAT 59.621 39.130 0.00 0.00 31.10 3.79
1488 1561 2.747989 TGAAACGTTGGTGTTGTTAGCA 59.252 40.909 0.00 0.00 31.10 3.49
1489 1562 3.408288 TGAAACGTTGGTGTTGTTAGC 57.592 42.857 0.00 0.00 31.10 3.09
1490 1563 4.025563 TCGATGAAACGTTGGTGTTGTTAG 60.026 41.667 0.00 0.00 31.10 2.34
1491 1564 3.869832 TCGATGAAACGTTGGTGTTGTTA 59.130 39.130 0.00 0.00 31.10 2.41
1492 1565 2.678836 TCGATGAAACGTTGGTGTTGTT 59.321 40.909 0.00 0.00 31.10 2.83
1493 1566 2.031191 GTCGATGAAACGTTGGTGTTGT 59.969 45.455 0.00 0.00 31.10 3.32
1494 1567 2.601266 GGTCGATGAAACGTTGGTGTTG 60.601 50.000 0.00 0.00 31.10 3.33
1495 1568 1.600485 GGTCGATGAAACGTTGGTGTT 59.400 47.619 0.00 0.00 34.70 3.32
1496 1569 1.202604 AGGTCGATGAAACGTTGGTGT 60.203 47.619 0.00 0.00 34.70 4.16
1497 1570 1.508632 AGGTCGATGAAACGTTGGTG 58.491 50.000 0.00 0.00 34.70 4.17
1498 1571 2.611224 GGTAGGTCGATGAAACGTTGGT 60.611 50.000 0.00 0.00 34.70 3.67
1499 1572 1.997606 GGTAGGTCGATGAAACGTTGG 59.002 52.381 0.00 0.00 34.70 3.77
1500 1573 1.997606 GGGTAGGTCGATGAAACGTTG 59.002 52.381 0.00 0.00 34.70 4.10
1501 1574 1.403249 CGGGTAGGTCGATGAAACGTT 60.403 52.381 0.00 0.00 34.70 3.99
1502 1575 0.171903 CGGGTAGGTCGATGAAACGT 59.828 55.000 0.00 0.00 34.70 3.99
1503 1576 0.171903 ACGGGTAGGTCGATGAAACG 59.828 55.000 0.00 0.00 0.00 3.60
1504 1577 2.094338 AGAACGGGTAGGTCGATGAAAC 60.094 50.000 0.00 0.00 42.70 2.78
1505 1578 2.173519 AGAACGGGTAGGTCGATGAAA 58.826 47.619 0.00 0.00 42.70 2.69
1506 1579 1.843368 AGAACGGGTAGGTCGATGAA 58.157 50.000 0.00 0.00 42.70 2.57
1507 1580 2.715749 TAGAACGGGTAGGTCGATGA 57.284 50.000 0.00 0.00 42.70 2.92
1508 1581 2.228343 GGATAGAACGGGTAGGTCGATG 59.772 54.545 0.00 0.00 42.70 3.84
1509 1582 2.158564 TGGATAGAACGGGTAGGTCGAT 60.159 50.000 0.00 0.00 42.70 3.59
1510 1583 1.212688 TGGATAGAACGGGTAGGTCGA 59.787 52.381 0.00 0.00 42.70 4.20
1511 1584 1.683943 TGGATAGAACGGGTAGGTCG 58.316 55.000 0.00 0.00 42.70 4.79
1512 1585 4.344390 AGATTTGGATAGAACGGGTAGGTC 59.656 45.833 0.00 0.00 36.63 3.85
1513 1586 4.296056 AGATTTGGATAGAACGGGTAGGT 58.704 43.478 0.00 0.00 0.00 3.08
1514 1587 4.957684 AGATTTGGATAGAACGGGTAGG 57.042 45.455 0.00 0.00 0.00 3.18
1515 1588 6.874134 CCATAAGATTTGGATAGAACGGGTAG 59.126 42.308 0.00 0.00 36.26 3.18
1516 1589 6.328148 ACCATAAGATTTGGATAGAACGGGTA 59.672 38.462 0.00 0.00 37.69 3.69
1517 1590 5.132144 ACCATAAGATTTGGATAGAACGGGT 59.868 40.000 0.00 0.00 37.69 5.28
1518 1591 5.621193 ACCATAAGATTTGGATAGAACGGG 58.379 41.667 0.00 0.00 37.69 5.28
1519 1592 7.878127 ACATACCATAAGATTTGGATAGAACGG 59.122 37.037 0.00 0.00 37.69 4.44
1520 1593 8.712363 CACATACCATAAGATTTGGATAGAACG 58.288 37.037 0.00 0.00 37.69 3.95
1521 1594 8.507249 GCACATACCATAAGATTTGGATAGAAC 58.493 37.037 0.00 0.00 37.69 3.01
1522 1595 8.217111 TGCACATACCATAAGATTTGGATAGAA 58.783 33.333 0.00 0.00 37.69 2.10
1523 1596 7.744733 TGCACATACCATAAGATTTGGATAGA 58.255 34.615 0.00 0.00 37.69 1.98
1524 1597 7.984422 TGCACATACCATAAGATTTGGATAG 57.016 36.000 0.00 0.00 37.69 2.08
1525 1598 8.938801 ATTGCACATACCATAAGATTTGGATA 57.061 30.769 0.00 0.00 37.69 2.59
1537 1610 7.176515 TCAGTTGAGTAAAATTGCACATACCAT 59.823 33.333 0.00 0.00 0.00 3.55
1713 1786 9.521841 TTATGTGTAATCAACCAAACTATCCAA 57.478 29.630 0.00 0.00 0.00 3.53
1795 1868 2.159627 AGTAGCGGAAGAAAATTGTGCG 59.840 45.455 0.00 0.00 0.00 5.34
1814 1887 2.744202 GCATTTGAACGGTCTGATGAGT 59.256 45.455 17.17 0.00 0.00 3.41
1883 1962 4.138817 CAAAACAACTGCACGTACGATAC 58.861 43.478 24.41 10.97 0.00 2.24
1990 2069 8.160765 TCTGGACTTCTGTGGTGAATAAATAAA 58.839 33.333 0.00 0.00 0.00 1.40
1991 2070 7.685481 TCTGGACTTCTGTGGTGAATAAATAA 58.315 34.615 0.00 0.00 0.00 1.40
2003 2082 3.509184 TCACTCATCTCTGGACTTCTGTG 59.491 47.826 0.00 0.00 0.00 3.66
2010 2089 2.170187 AGCCATTCACTCATCTCTGGAC 59.830 50.000 0.00 0.00 0.00 4.02
2076 2155 9.529325 TTGTATATACCAGAAGATTTCGTTGAG 57.471 33.333 10.38 0.00 34.02 3.02
2099 2180 7.654022 TTAACTCCCAGTTCAGAAAAATTGT 57.346 32.000 0.00 0.00 39.51 2.71
2107 2188 5.221561 TGACGAATTTAACTCCCAGTTCAGA 60.222 40.000 0.00 0.00 39.51 3.27
2119 2200 7.124347 TGATACACTTGGTGACGAATTTAAC 57.876 36.000 4.62 0.00 36.96 2.01
2133 2214 7.672983 ATGAAGTACTTGGTTGATACACTTG 57.327 36.000 14.14 0.00 0.00 3.16
2186 2267 7.283127 ACAATGATTAACCGAGCAATATTCTGT 59.717 33.333 0.00 0.00 0.00 3.41
2312 2399 3.568430 GTCCAACTTTTCCCGATCTTGTT 59.432 43.478 0.00 0.00 0.00 2.83
2392 2479 2.711542 AGAAAAGTATTGCTGGGACGG 58.288 47.619 0.00 0.00 38.10 4.79
2604 2691 0.250295 TGTCTGGTTAGGCAGCACAC 60.250 55.000 0.00 0.00 32.56 3.82
2703 2790 7.483018 ACTAATAGATACCTGATGATGGGAGT 58.517 38.462 0.00 0.00 0.00 3.85
2807 2896 8.555361 GCTGATCTGAAGGTTAAATAGATGAAC 58.445 37.037 3.42 0.00 0.00 3.18
2808 2897 7.439356 CGCTGATCTGAAGGTTAAATAGATGAA 59.561 37.037 3.42 0.00 0.00 2.57
2813 2902 5.174035 CGACGCTGATCTGAAGGTTAAATAG 59.826 44.000 3.42 0.00 0.00 1.73
2816 2905 3.057104 TCGACGCTGATCTGAAGGTTAAA 60.057 43.478 3.42 0.00 0.00 1.52
2865 2954 2.097466 CCGAATGAGGGTAATGTGTTGC 59.903 50.000 0.00 0.00 0.00 4.17
2883 2972 1.466025 AAAGTGTGGTCGCTACCCGA 61.466 55.000 4.73 0.00 46.16 5.14
2894 2983 1.151668 CGAAGAGAGGCAAAGTGTGG 58.848 55.000 0.00 0.00 0.00 4.17
2900 2989 1.691976 TCAGGTTCGAAGAGAGGCAAA 59.308 47.619 0.00 0.00 38.43 3.68
2918 3007 0.752743 CCGTATACCCACCGACCTCA 60.753 60.000 0.00 0.00 0.00 3.86
2919 3008 0.466189 TCCGTATACCCACCGACCTC 60.466 60.000 0.00 0.00 0.00 3.85
2934 3023 7.177216 TCCATGACGGTATAAATATACTTCCGT 59.823 37.037 11.28 11.28 38.79 4.69
3026 3120 9.407380 ACTCATGCTTTTTATATTGGTATGACA 57.593 29.630 0.00 0.00 0.00 3.58
3041 3135 8.242053 GCATGCATATATCTAACTCATGCTTTT 58.758 33.333 14.21 0.00 46.73 2.27
3042 3136 7.759465 GCATGCATATATCTAACTCATGCTTT 58.241 34.615 14.21 0.00 46.73 3.51
3046 3140 8.433421 TCATGCATGCATATATCTAACTCATG 57.567 34.615 31.73 16.25 34.91 3.07
3061 3155 5.648178 ACAAAAAGTATCTCATGCATGCA 57.352 34.783 25.04 25.04 0.00 3.96
3062 3156 5.220340 GCAACAAAAAGTATCTCATGCATGC 60.220 40.000 22.25 11.82 0.00 4.06
3153 3250 9.507329 ACAGATACATTGTGTTGAGTAAAGAAT 57.493 29.630 0.00 0.00 0.00 2.40
3169 3266 9.686683 AAACATTTAAGAGGCTACAGATACATT 57.313 29.630 0.00 0.00 0.00 2.71
3172 3269 9.989869 GAAAAACATTTAAGAGGCTACAGATAC 57.010 33.333 0.00 0.00 0.00 2.24
3190 3287 4.222810 GGCAATTAGGAGTGGGAAAAACAT 59.777 41.667 0.00 0.00 0.00 2.71
3200 3297 2.503356 ACTCAGAGGGCAATTAGGAGTG 59.497 50.000 1.53 0.00 33.28 3.51
3211 3308 6.354130 TGTATACCAAATAAACTCAGAGGGC 58.646 40.000 1.53 0.00 0.00 5.19
3213 3310 9.265901 CTGATGTATACCAAATAAACTCAGAGG 57.734 37.037 1.53 0.00 30.49 3.69
3237 3334 2.859538 ACAAAGCACGCACAAAAATCTG 59.140 40.909 0.00 0.00 0.00 2.90
3248 3345 2.073816 ACAGGTACATACAAAGCACGC 58.926 47.619 0.00 0.00 0.00 5.34
3249 3346 4.239304 TGTACAGGTACATACAAAGCACG 58.761 43.478 8.14 0.00 40.77 5.34
3951 4048 6.954616 TGAAATCAAATGCATGAACACATC 57.045 33.333 0.00 0.00 32.06 3.06
3959 4056 6.073494 ACACACATGTTGAAATCAAATGCATG 60.073 34.615 17.07 17.07 40.59 4.06
3969 4066 6.712095 AGTAGATGACACACACATGTTGAAAT 59.288 34.615 12.90 2.72 36.72 2.17
3976 4073 4.462508 AGGAGTAGATGACACACACATG 57.537 45.455 0.00 0.00 0.00 3.21
3994 4093 1.023719 TACTCCCTCCATCCCAAGGA 58.976 55.000 0.00 0.00 34.35 3.36
3995 4094 2.124560 ATACTCCCTCCATCCCAAGG 57.875 55.000 0.00 0.00 0.00 3.61
3996 4095 3.718956 AGAAATACTCCCTCCATCCCAAG 59.281 47.826 0.00 0.00 0.00 3.61
3997 4096 3.747852 AGAAATACTCCCTCCATCCCAA 58.252 45.455 0.00 0.00 0.00 4.12
3998 4097 3.438131 AGAAATACTCCCTCCATCCCA 57.562 47.619 0.00 0.00 0.00 4.37
3999 4098 4.797912 AAAGAAATACTCCCTCCATCCC 57.202 45.455 0.00 0.00 0.00 3.85
4000 4099 5.755849 TCAAAAGAAATACTCCCTCCATCC 58.244 41.667 0.00 0.00 0.00 3.51
4001 4100 7.888250 ATTCAAAAGAAATACTCCCTCCATC 57.112 36.000 0.00 0.00 0.00 3.51
4002 4101 9.768215 TTTATTCAAAAGAAATACTCCCTCCAT 57.232 29.630 0.00 0.00 0.00 3.41
4003 4102 9.243105 CTTTATTCAAAAGAAATACTCCCTCCA 57.757 33.333 0.00 0.00 0.00 3.86
4004 4103 9.244292 ACTTTATTCAAAAGAAATACTCCCTCC 57.756 33.333 4.59 0.00 0.00 4.30
4043 4142 7.637229 CATATGTCAACCATCAGAGAATTGAC 58.363 38.462 13.14 13.14 46.02 3.18
4069 4168 1.463444 CACGAGGAAACTTTAAGCCCG 59.537 52.381 0.00 0.00 44.43 6.13
4083 4182 5.983118 TCAAACATATACTACATGCACGAGG 59.017 40.000 0.00 0.00 0.00 4.63
4086 4185 7.850501 TGAATCAAACATATACTACATGCACG 58.149 34.615 0.00 0.00 0.00 5.34
4119 4221 8.345724 ACATTTTGCATCTCAAGAAAGACTAT 57.654 30.769 0.00 0.00 35.84 2.12
4124 4226 9.286946 GATAAGACATTTTGCATCTCAAGAAAG 57.713 33.333 0.00 0.00 35.84 2.62
4140 4242 6.149474 CGTTGAAGGAAACTGGATAAGACATT 59.851 38.462 0.00 0.00 42.68 2.71
4148 4250 3.485463 TGACGTTGAAGGAAACTGGAT 57.515 42.857 0.00 0.00 42.68 3.41
4206 4308 8.143193 TGGTACTTTCGACAAATAGAAGTGTAA 58.857 33.333 6.66 0.00 0.00 2.41
4214 4316 5.408604 AGCAAGTGGTACTTTCGACAAATAG 59.591 40.000 0.00 0.00 36.03 1.73
4222 4324 5.607119 ACATAAAGCAAGTGGTACTTTCG 57.393 39.130 0.00 0.00 36.03 3.46
4237 4339 5.220529 GGACGAACATAACCGGAACATAAAG 60.221 44.000 9.46 0.00 0.00 1.85
4241 4343 2.027929 TGGACGAACATAACCGGAACAT 60.028 45.455 9.46 0.00 0.00 2.71
4246 4348 2.144730 TGTTTGGACGAACATAACCGG 58.855 47.619 0.00 0.00 34.77 5.28
4256 4358 1.068402 CATGCAAGCATGTTTGGACGA 60.068 47.619 23.25 0.96 46.20 4.20
4257 4359 1.342555 CATGCAAGCATGTTTGGACG 58.657 50.000 23.25 9.80 46.20 4.79
4274 4376 0.673644 GCCAGTAACCGTGCACTCAT 60.674 55.000 16.19 2.77 0.00 2.90
4279 4381 1.673993 CCATGCCAGTAACCGTGCA 60.674 57.895 0.00 0.00 38.23 4.57
4292 4395 6.549736 AGGGACTGGTTTATTTAATACCATGC 59.450 38.462 0.62 0.00 40.89 4.06
4337 4445 3.694566 GGGTTTAAGGACATCATCACCAC 59.305 47.826 0.00 0.00 0.00 4.16
4339 4447 3.947834 CTGGGTTTAAGGACATCATCACC 59.052 47.826 0.00 0.00 0.00 4.02
4357 4478 0.609131 GGGTCATGTGTTGGACTGGG 60.609 60.000 0.00 0.00 34.49 4.45
4369 4490 5.476599 TGAGTAAATTCCACAAAGGGTCATG 59.523 40.000 0.00 0.00 38.24 3.07
4370 4491 5.640147 TGAGTAAATTCCACAAAGGGTCAT 58.360 37.500 0.00 0.00 38.24 3.06
4371 4492 5.055265 TGAGTAAATTCCACAAAGGGTCA 57.945 39.130 0.00 0.00 38.24 4.02
4372 4493 5.313712 TCTGAGTAAATTCCACAAAGGGTC 58.686 41.667 0.00 0.00 38.24 4.46
4373 4494 5.319043 TCTGAGTAAATTCCACAAAGGGT 57.681 39.130 0.00 0.00 38.24 4.34
4377 4523 9.513906 TGATTGTATCTGAGTAAATTCCACAAA 57.486 29.630 0.00 0.00 0.00 2.83
4420 4567 8.572828 TTTCACAACAATTAACAGCTTGTATG 57.427 30.769 0.00 0.00 34.61 2.39
4422 4569 9.593134 AATTTTCACAACAATTAACAGCTTGTA 57.407 25.926 0.00 0.00 34.61 2.41
4448 4596 8.694540 CCCATGAAACAAATGGAGTCAATATAA 58.305 33.333 4.00 0.00 46.44 0.98
4452 4601 5.047092 GTCCCATGAAACAAATGGAGTCAAT 60.047 40.000 4.00 0.00 46.44 2.57
4473 4622 5.529060 CCATTTGATTTAGGTCTAGCTGTCC 59.471 44.000 0.00 0.00 0.00 4.02
4553 4702 1.492176 ACCAGGTGGGATCATAGCTTG 59.508 52.381 0.00 0.00 41.15 4.01
4593 4745 6.890814 TGTGGCATCATATCCATTAATATGCA 59.109 34.615 15.43 0.00 39.91 3.96
4601 4753 3.490439 TCGTGTGGCATCATATCCATT 57.510 42.857 0.00 0.00 34.47 3.16
4604 4756 1.532868 GCTTCGTGTGGCATCATATCC 59.467 52.381 0.00 0.00 0.00 2.59
4623 4775 3.843240 CGCGACAAAGCTCTCCGC 61.843 66.667 0.00 11.16 42.11 5.54
4624 4776 3.843240 GCGCGACAAAGCTCTCCG 61.843 66.667 12.10 0.00 34.40 4.63
4625 4777 3.843240 CGCGCGACAAAGCTCTCC 61.843 66.667 28.94 0.00 34.40 3.71
4626 4778 3.843240 CCGCGCGACAAAGCTCTC 61.843 66.667 34.63 0.00 34.40 3.20
4627 4779 4.664677 ACCGCGCGACAAAGCTCT 62.665 61.111 34.63 0.00 34.40 4.09
4628 4780 4.430423 CACCGCGCGACAAAGCTC 62.430 66.667 34.63 0.00 34.40 4.09
4631 4783 2.640736 AAACACACCGCGCGACAAAG 62.641 55.000 34.63 17.10 0.00 2.77
4632 4784 1.426816 TAAACACACCGCGCGACAAA 61.427 50.000 34.63 4.89 0.00 2.83
4633 4785 1.426816 TTAAACACACCGCGCGACAA 61.427 50.000 34.63 9.63 0.00 3.18
4634 4786 1.222766 ATTAAACACACCGCGCGACA 61.223 50.000 34.63 3.32 0.00 4.35
4635 4787 0.110554 AATTAAACACACCGCGCGAC 60.111 50.000 34.63 0.00 0.00 5.19
4636 4788 0.164217 GAATTAAACACACCGCGCGA 59.836 50.000 34.63 8.18 0.00 5.87
4637 4789 0.165079 AGAATTAAACACACCGCGCG 59.835 50.000 25.67 25.67 0.00 6.86
4638 4790 1.195900 TGAGAATTAAACACACCGCGC 59.804 47.619 0.00 0.00 0.00 6.86
4748 4900 5.673337 TTCTGCGCCATATATTCTGAAAC 57.327 39.130 4.18 0.00 0.00 2.78
4762 4914 1.953559 TATCCTTGTGATTCTGCGCC 58.046 50.000 4.18 0.00 34.76 6.53
4763 4915 5.521735 CCTATATATCCTTGTGATTCTGCGC 59.478 44.000 0.00 0.00 34.76 6.09
4764 4916 6.045318 CCCTATATATCCTTGTGATTCTGCG 58.955 44.000 0.00 0.00 34.76 5.18
4765 4917 5.819901 GCCCTATATATCCTTGTGATTCTGC 59.180 44.000 0.00 0.00 34.76 4.26
4766 4918 6.950842 TGCCCTATATATCCTTGTGATTCTG 58.049 40.000 0.00 0.00 34.76 3.02
4767 4919 6.352565 GCTGCCCTATATATCCTTGTGATTCT 60.353 42.308 0.00 0.00 34.76 2.40
4768 4920 5.819901 GCTGCCCTATATATCCTTGTGATTC 59.180 44.000 0.00 0.00 34.76 2.52
4769 4921 5.490357 AGCTGCCCTATATATCCTTGTGATT 59.510 40.000 0.00 0.00 34.76 2.57
4770 4922 5.035556 AGCTGCCCTATATATCCTTGTGAT 58.964 41.667 0.00 0.00 37.49 3.06
4772 4924 4.511527 CAGCTGCCCTATATATCCTTGTG 58.488 47.826 0.00 0.00 0.00 3.33
4775 4927 3.777522 GACCAGCTGCCCTATATATCCTT 59.222 47.826 8.66 0.00 0.00 3.36
4776 4928 3.013417 AGACCAGCTGCCCTATATATCCT 59.987 47.826 8.66 0.00 0.00 3.24
4777 4929 3.379452 AGACCAGCTGCCCTATATATCC 58.621 50.000 8.66 0.00 0.00 2.59
4778 4930 4.342665 GGTAGACCAGCTGCCCTATATATC 59.657 50.000 8.66 0.00 42.99 1.63
4799 4951 1.762460 CGGGATCAGTGGCCTAGGT 60.762 63.158 11.31 0.00 0.00 3.08
4838 4990 5.543714 ACGTACCTTGTCATCATACAACAA 58.456 37.500 0.00 0.00 35.56 2.83
4880 5032 0.806102 CGAGAACAATCGACGCCCAT 60.806 55.000 0.00 0.00 45.56 4.00
4982 5138 8.378115 TCCACATGATTTCATAGGGAATTTTT 57.622 30.769 0.00 0.00 35.87 1.94
4983 5139 7.976414 TCCACATGATTTCATAGGGAATTTT 57.024 32.000 0.00 0.00 35.87 1.82
4984 5140 7.976414 TTCCACATGATTTCATAGGGAATTT 57.024 32.000 15.64 0.00 40.11 1.82
4985 5141 7.976414 TTTCCACATGATTTCATAGGGAATT 57.024 32.000 18.33 0.00 42.31 2.17
4986 5142 8.557304 AATTTCCACATGATTTCATAGGGAAT 57.443 30.769 18.33 14.31 42.31 3.01
4987 5143 7.976414 AATTTCCACATGATTTCATAGGGAA 57.024 32.000 15.64 15.64 41.70 3.97
4988 5144 7.633334 GCAAATTTCCACATGATTTCATAGGGA 60.633 37.037 0.00 7.79 36.54 4.20
4989 5145 6.480981 GCAAATTTCCACATGATTTCATAGGG 59.519 38.462 0.00 7.14 34.26 3.53
4990 5146 7.042950 TGCAAATTTCCACATGATTTCATAGG 58.957 34.615 0.00 0.00 34.26 2.57
4991 5147 8.547894 CATGCAAATTTCCACATGATTTCATAG 58.452 33.333 15.49 0.00 41.93 2.23
4992 5148 7.011576 GCATGCAAATTTCCACATGATTTCATA 59.988 33.333 21.20 0.00 41.93 2.15
4993 5149 6.183360 GCATGCAAATTTCCACATGATTTCAT 60.183 34.615 21.20 0.00 41.93 2.57
4994 5150 5.122554 GCATGCAAATTTCCACATGATTTCA 59.877 36.000 21.20 0.00 41.93 2.69
4995 5151 5.353123 AGCATGCAAATTTCCACATGATTTC 59.647 36.000 21.98 9.42 41.93 2.17
4996 5152 5.123186 CAGCATGCAAATTTCCACATGATTT 59.877 36.000 21.98 9.08 41.93 2.17
4997 5153 4.634004 CAGCATGCAAATTTCCACATGATT 59.366 37.500 21.98 10.77 41.93 2.57
4998 5154 4.188462 CAGCATGCAAATTTCCACATGAT 58.812 39.130 21.98 15.58 41.93 2.45
4999 5155 3.591023 CAGCATGCAAATTTCCACATGA 58.409 40.909 21.98 0.00 41.93 3.07
5040 5196 7.606858 ATTCATAAGAACATCGGAGCATATG 57.393 36.000 0.00 0.00 36.39 1.78
5043 5202 7.766278 GGTATATTCATAAGAACATCGGAGCAT 59.234 37.037 0.00 0.00 36.39 3.79
5112 5342 3.628487 TGTGTACATGTCATGGATGCATG 59.372 43.478 20.28 20.28 42.52 4.06
5113 5343 3.888583 TGTGTACATGTCATGGATGCAT 58.111 40.909 17.08 0.00 33.60 3.96
5119 5349 4.578871 TCTCCTTTGTGTACATGTCATGG 58.421 43.478 17.08 0.73 33.60 3.66
5125 5355 6.738114 ACATTTGTTCTCCTTTGTGTACATG 58.262 36.000 0.00 0.00 0.00 3.21
5126 5356 6.959639 ACATTTGTTCTCCTTTGTGTACAT 57.040 33.333 0.00 0.00 0.00 2.29
5128 5358 7.492352 AGTACATTTGTTCTCCTTTGTGTAC 57.508 36.000 0.00 0.00 40.34 2.90
5129 5359 7.227910 GGAAGTACATTTGTTCTCCTTTGTGTA 59.772 37.037 0.00 0.00 0.00 2.90
5130 5360 6.039382 GGAAGTACATTTGTTCTCCTTTGTGT 59.961 38.462 0.00 0.00 0.00 3.72
5131 5361 6.263168 AGGAAGTACATTTGTTCTCCTTTGTG 59.737 38.462 0.00 0.00 0.00 3.33
5132 5362 6.365520 AGGAAGTACATTTGTTCTCCTTTGT 58.634 36.000 0.00 0.00 0.00 2.83
5133 5363 6.712547 AGAGGAAGTACATTTGTTCTCCTTTG 59.287 38.462 0.00 0.00 30.01 2.77
5134 5364 6.712547 CAGAGGAAGTACATTTGTTCTCCTTT 59.287 38.462 0.00 2.79 30.01 3.11
5137 5367 5.552178 ACAGAGGAAGTACATTTGTTCTCC 58.448 41.667 0.00 0.00 0.00 3.71
5144 5379 2.236395 CCCGGACAGAGGAAGTACATTT 59.764 50.000 0.73 0.00 0.00 2.32
5161 5396 1.604693 GCGAATGTCCTATACACCCGG 60.605 57.143 0.00 0.00 42.09 5.73
5162 5397 1.067974 TGCGAATGTCCTATACACCCG 59.932 52.381 0.00 0.00 42.09 5.28
5174 5409 5.478332 TGATGACCTAGATCTATGCGAATGT 59.522 40.000 2.11 0.00 0.00 2.71
5178 5413 6.596309 AATTGATGACCTAGATCTATGCGA 57.404 37.500 2.11 0.00 0.00 5.10
5180 5415 8.027440 GTCAAATTGATGACCTAGATCTATGC 57.973 38.462 2.11 0.00 43.11 3.14
5236 5471 7.558161 ACATCCGCATATGTCCAATAATATG 57.442 36.000 4.29 0.00 35.08 1.78
5241 5476 5.738619 ACTACATCCGCATATGTCCAATA 57.261 39.130 4.29 0.00 40.52 1.90
5248 5483 7.477144 TGTTTAGAAACTACATCCGCATATG 57.523 36.000 6.69 0.00 39.59 1.78
5249 5484 9.944376 ATATGTTTAGAAACTACATCCGCATAT 57.056 29.630 6.69 0.00 39.59 1.78
5309 5546 9.562583 GTAATTCTAGGTCGATGATTTAGCTAG 57.437 37.037 0.00 0.00 40.84 3.42
5322 5559 5.471456 AGGGTATACACGTAATTCTAGGTCG 59.529 44.000 5.01 0.00 0.00 4.79
5337 5574 4.401022 CGTCCAGGTGTATAGGGTATACA 58.599 47.826 5.01 3.18 46.33 2.29
5338 5575 3.760684 CCGTCCAGGTGTATAGGGTATAC 59.239 52.174 0.00 0.00 41.06 1.47
5339 5576 3.657239 TCCGTCCAGGTGTATAGGGTATA 59.343 47.826 0.00 0.00 41.99 1.47
5342 5579 0.632835 TCCGTCCAGGTGTATAGGGT 59.367 55.000 0.00 0.00 41.99 4.34
5344 5581 1.329256 CCTCCGTCCAGGTGTATAGG 58.671 60.000 0.00 0.00 41.99 2.57
5348 5585 0.700564 ACTACCTCCGTCCAGGTGTA 59.299 55.000 7.96 0.00 47.00 2.90
5359 5596 6.952358 TCCCATGAGTGTTATATACTACCTCC 59.048 42.308 0.00 0.00 0.00 4.30
5373 5610 1.283029 CTTCACCCATCCCATGAGTGT 59.717 52.381 0.00 0.00 39.65 3.55
5389 5626 5.185454 CAACACTTACCTATGCATCCTTCA 58.815 41.667 0.19 0.00 0.00 3.02
5391 5628 5.045578 AGACAACACTTACCTATGCATCCTT 60.046 40.000 0.19 0.00 0.00 3.36
5392 5629 4.471386 AGACAACACTTACCTATGCATCCT 59.529 41.667 0.19 0.00 0.00 3.24
5393 5630 4.770795 AGACAACACTTACCTATGCATCC 58.229 43.478 0.19 0.00 0.00 3.51
5394 5631 4.811557 GGAGACAACACTTACCTATGCATC 59.188 45.833 0.19 0.00 0.00 3.91
5396 5633 3.368013 CGGAGACAACACTTACCTATGCA 60.368 47.826 0.00 0.00 0.00 3.96
5398 5635 3.782046 CCGGAGACAACACTTACCTATG 58.218 50.000 0.00 0.00 0.00 2.23
5399 5636 2.167900 GCCGGAGACAACACTTACCTAT 59.832 50.000 5.05 0.00 0.00 2.57
5400 5637 1.547372 GCCGGAGACAACACTTACCTA 59.453 52.381 5.05 0.00 0.00 3.08
5401 5638 0.320697 GCCGGAGACAACACTTACCT 59.679 55.000 5.05 0.00 0.00 3.08
5402 5639 0.672711 GGCCGGAGACAACACTTACC 60.673 60.000 5.05 0.00 0.00 2.85
5403 5640 0.034337 TGGCCGGAGACAACACTTAC 59.966 55.000 5.05 0.00 0.00 2.34
5404 5641 0.981183 ATGGCCGGAGACAACACTTA 59.019 50.000 5.05 0.00 0.00 2.24
5405 5642 0.606401 CATGGCCGGAGACAACACTT 60.606 55.000 5.05 0.00 0.00 3.16
5406 5643 1.003355 CATGGCCGGAGACAACACT 60.003 57.895 5.05 0.00 0.00 3.55
5407 5644 2.040544 CCATGGCCGGAGACAACAC 61.041 63.158 5.05 0.00 0.00 3.32
5408 5645 2.350895 CCATGGCCGGAGACAACA 59.649 61.111 5.05 0.00 0.00 3.33
5409 5646 3.134127 GCCATGGCCGGAGACAAC 61.134 66.667 27.24 0.00 34.56 3.32
5410 5647 2.424842 AAAGCCATGGCCGGAGACAA 62.425 55.000 33.14 0.00 43.17 3.18
5411 5648 2.905996 AAAGCCATGGCCGGAGACA 61.906 57.895 33.14 0.00 43.17 3.41
5417 5654 0.249826 ACAAAACAAAGCCATGGCCG 60.250 50.000 33.14 23.19 43.17 6.13
5422 5659 1.485895 AGGTGCACAAAACAAAGCCAT 59.514 42.857 20.43 0.00 0.00 4.40
5423 5660 0.901124 AGGTGCACAAAACAAAGCCA 59.099 45.000 20.43 0.00 0.00 4.75
5435 5672 6.735130 ACAAATCTAACTTACAAAGGTGCAC 58.265 36.000 8.80 8.80 0.00 4.57
5440 5677 9.394477 GCTACAAACAAATCTAACTTACAAAGG 57.606 33.333 0.00 0.00 0.00 3.11
5446 5683 9.720769 AGCTTAGCTACAAACAAATCTAACTTA 57.279 29.630 4.30 0.00 36.99 2.24
5449 5686 7.414208 GGGAGCTTAGCTACAAACAAATCTAAC 60.414 40.741 19.06 0.00 42.18 2.34
5456 5693 3.780804 TGGGAGCTTAGCTACAAACAA 57.219 42.857 19.06 0.00 42.18 2.83
5466 5703 3.204306 TCAGCATGATTGGGAGCTTAG 57.796 47.619 0.00 0.00 42.56 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.