Multiple sequence alignment - TraesCS1A01G386300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G386300 chr1A 100.000 4051 0 0 1 4051 555634348 555638398 0.000000e+00 7481.0
1 TraesCS1A01G386300 chr1D 88.603 1825 139 21 718 2501 463497987 463496191 0.000000e+00 2154.0
2 TraesCS1A01G386300 chr1D 92.571 848 57 4 2566 3411 463496178 463495335 0.000000e+00 1212.0
3 TraesCS1A01G386300 chr1D 93.243 74 5 0 3968 4041 463494883 463494810 4.280000e-20 110.0
4 TraesCS1A01G386300 chr1B 92.314 1145 77 7 2272 3411 638931116 638932254 0.000000e+00 1616.0
5 TraesCS1A01G386300 chr1B 87.297 1047 91 15 715 1737 638929554 638930582 0.000000e+00 1158.0
6 TraesCS1A01G386300 chr1B 88.929 551 37 12 1787 2328 638930580 638931115 0.000000e+00 658.0
7 TraesCS1A01G386300 chr3D 96.089 716 27 1 1 716 289158732 289158018 0.000000e+00 1166.0
8 TraesCS1A01G386300 chr3D 97.778 45 1 0 682 726 586533489 586533533 1.210000e-10 78.7
9 TraesCS1A01G386300 chr6A 97.342 489 12 1 228 715 607040364 607039876 0.000000e+00 830.0
10 TraesCS1A01G386300 chr6A 97.786 271 5 1 1 270 607040618 607040348 2.210000e-127 466.0
11 TraesCS1A01G386300 chr3A 96.566 495 16 1 219 712 685569723 685570217 0.000000e+00 819.0
12 TraesCS1A01G386300 chr3A 98.155 271 4 1 1 270 685569478 685569748 4.740000e-129 472.0
13 TraesCS1A01G386300 chr3A 95.652 46 2 0 1842 1887 493712123 493712168 1.560000e-09 75.0
14 TraesCS1A01G386300 chr4A 86.895 641 46 17 117 720 729095901 729095262 0.000000e+00 684.0
15 TraesCS1A01G386300 chr7D 79.668 241 43 5 2808 3047 434911525 434911290 6.960000e-38 169.0
16 TraesCS1A01G386300 chr7D 91.089 101 9 0 1977 2077 434912098 434911998 1.960000e-28 137.0
17 TraesCS1A01G386300 chr7D 100.000 41 0 0 676 716 619215549 619215589 4.340000e-10 76.8
18 TraesCS1A01G386300 chr6D 90.476 126 7 1 13 133 108721893 108722018 1.170000e-35 161.0
19 TraesCS1A01G386300 chr7B 79.583 240 33 13 2808 3047 451655874 451655651 1.510000e-34 158.0
20 TraesCS1A01G386300 chr7B 91.089 101 9 0 1977 2077 451656442 451656342 1.960000e-28 137.0
21 TraesCS1A01G386300 chr7B 95.652 46 2 0 1842 1887 451656560 451656515 1.560000e-09 75.0
22 TraesCS1A01G386300 chr7A 88.350 103 10 2 1977 2077 485200417 485200315 5.500000e-24 122.0
23 TraesCS1A01G386300 chr7A 97.826 46 1 0 1842 1887 485200535 485200490 3.360000e-11 80.5
24 TraesCS1A01G386300 chr7A 87.931 58 6 1 667 724 687160231 687160287 2.610000e-07 67.6
25 TraesCS1A01G386300 chrUn 90.741 54 4 1 663 716 17191136 17191188 2.020000e-08 71.3
26 TraesCS1A01G386300 chr3B 90.741 54 4 1 673 725 734175012 734174959 2.020000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G386300 chr1A 555634348 555638398 4050 False 7481.000000 7481 100.000000 1 4051 1 chr1A.!!$F1 4050
1 TraesCS1A01G386300 chr1D 463494810 463497987 3177 True 1158.666667 2154 91.472333 718 4041 3 chr1D.!!$R1 3323
2 TraesCS1A01G386300 chr1B 638929554 638932254 2700 False 1144.000000 1616 89.513333 715 3411 3 chr1B.!!$F1 2696
3 TraesCS1A01G386300 chr3D 289158018 289158732 714 True 1166.000000 1166 96.089000 1 716 1 chr3D.!!$R1 715
4 TraesCS1A01G386300 chr6A 607039876 607040618 742 True 648.000000 830 97.564000 1 715 2 chr6A.!!$R1 714
5 TraesCS1A01G386300 chr3A 685569478 685570217 739 False 645.500000 819 97.360500 1 712 2 chr3A.!!$F2 711
6 TraesCS1A01G386300 chr4A 729095262 729095901 639 True 684.000000 684 86.895000 117 720 1 chr4A.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 723 1.436600 CCTGCGGCATGATAGATGTC 58.563 55.0 1.75 0.00 0.00 3.06 F
1266 1351 0.109039 GCCGGCGGCTTTATTTTTCA 60.109 50.0 41.44 0.00 46.69 2.69 F
1299 1384 0.179137 GGTAAGATTTGCGGCTTGCC 60.179 55.0 0.00 0.75 45.60 4.52 F
1301 1386 0.610509 TAAGATTTGCGGCTTGCCCA 60.611 50.0 6.02 2.60 45.60 5.36 F
2558 2729 0.475906 AGGCTGTTGCAGTCCTTTCT 59.524 50.0 0.00 0.00 36.67 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 2555 0.109735 GGTTAAAAGACGCAGCAGGC 60.110 55.000 0.00 0.0 39.90 4.85 R
2391 2560 1.069227 GCCAGTGGTTAAAAGACGCAG 60.069 52.381 11.74 0.0 0.00 5.18 R
2537 2708 1.458639 AAAGGACTGCAACAGCCTGC 61.459 55.000 10.11 0.0 42.95 4.85 R
2636 2807 2.353208 GGGCGCTGTTCCATATCTAGAG 60.353 54.545 7.64 0.0 0.00 2.43 R
3764 3981 0.253160 AGTCTGGGTCATGGGGCTTA 60.253 55.000 0.00 0.0 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
306 336 5.676552 TGGCGCACTTTAATTAGGAATCTA 58.323 37.500 10.83 0.00 0.00 1.98
658 723 1.436600 CCTGCGGCATGATAGATGTC 58.563 55.000 1.75 0.00 0.00 3.06
716 781 3.650139 CACGGGCATATGTCCTAGTAAC 58.350 50.000 23.58 0.00 37.76 2.50
766 831 2.045524 CTCTCATGTGGCCCATAGTCT 58.954 52.381 0.00 0.00 30.71 3.24
783 848 2.176889 GTCTAGTTGGGCTACACCTCA 58.823 52.381 0.00 0.00 39.10 3.86
827 895 5.485708 CCTAGCTTTATGGGCTAAGTAGGAT 59.514 44.000 0.00 0.00 41.02 3.24
1021 1104 1.668101 GGTACGCTCTCCCCTCACTG 61.668 65.000 0.00 0.00 0.00 3.66
1022 1105 0.966370 GTACGCTCTCCCCTCACTGT 60.966 60.000 0.00 0.00 0.00 3.55
1025 1108 0.173708 CGCTCTCCCCTCACTGTTAC 59.826 60.000 0.00 0.00 0.00 2.50
1029 1112 3.917300 CTCTCCCCTCACTGTTACCTAT 58.083 50.000 0.00 0.00 0.00 2.57
1053 1136 1.739049 CTCTGATCCGTGCTCCTCC 59.261 63.158 0.00 0.00 0.00 4.30
1055 1138 2.362503 TGATCCGTGCTCCTCCGT 60.363 61.111 0.00 0.00 0.00 4.69
1062 1145 2.758327 TGCTCCTCCGTATGCCGT 60.758 61.111 0.00 0.00 33.66 5.68
1094 1179 3.646715 GCCTGCCTGTGGGGTGTA 61.647 66.667 0.00 0.00 37.43 2.90
1099 1184 1.299976 GCCTGTGGGGTGTAGGAAG 59.700 63.158 0.00 0.00 37.43 3.46
1111 1196 4.192317 GGTGTAGGAAGCATCTAGGTTTG 58.808 47.826 0.00 0.00 38.24 2.93
1114 1199 1.555075 AGGAAGCATCTAGGTTTGCGA 59.445 47.619 7.33 0.00 43.61 5.10
1119 1204 2.939103 AGCATCTAGGTTTGCGATTGTC 59.061 45.455 7.33 0.00 43.61 3.18
1130 1215 0.445436 GCGATTGTCTGAGTGGCTTG 59.555 55.000 0.00 0.00 0.00 4.01
1131 1216 0.445436 CGATTGTCTGAGTGGCTTGC 59.555 55.000 0.00 0.00 0.00 4.01
1145 1230 0.179045 GCTTGCACACGGGGATCTAT 60.179 55.000 0.00 0.00 0.00 1.98
1146 1231 1.586422 CTTGCACACGGGGATCTATG 58.414 55.000 0.00 0.00 0.00 2.23
1221 1306 4.446371 AGAAATCATCCTTGAAGCCGTAG 58.554 43.478 0.00 0.00 34.96 3.51
1236 1321 2.554462 GCCGTAGCATCTGTCAGATCTA 59.446 50.000 12.62 13.23 39.53 1.98
1241 1326 5.929415 CGTAGCATCTGTCAGATCTAGAGTA 59.071 44.000 12.62 0.00 31.32 2.59
1244 1329 7.038154 AGCATCTGTCAGATCTAGAGTAAAC 57.962 40.000 12.62 0.00 31.32 2.01
1265 1350 2.660944 GCCGGCGGCTTTATTTTTC 58.339 52.632 41.44 10.56 46.69 2.29
1266 1351 0.109039 GCCGGCGGCTTTATTTTTCA 60.109 50.000 41.44 0.00 46.69 2.69
1270 1355 3.108144 CGGCGGCTTTATTTTTCATCTG 58.892 45.455 7.61 0.00 0.00 2.90
1276 1361 5.345741 CGGCTTTATTTTTCATCTGGTGTTG 59.654 40.000 0.00 0.00 0.00 3.33
1284 1369 3.500448 TCATCTGGTGTTGCTTGGTAA 57.500 42.857 0.00 0.00 0.00 2.85
1296 1381 1.202348 GCTTGGTAAGATTTGCGGCTT 59.798 47.619 0.00 0.00 0.00 4.35
1299 1384 0.179137 GGTAAGATTTGCGGCTTGCC 60.179 55.000 0.00 0.75 45.60 4.52
1301 1386 0.610509 TAAGATTTGCGGCTTGCCCA 60.611 50.000 6.02 2.60 45.60 5.36
1303 1388 1.218854 GATTTGCGGCTTGCCCAAT 59.781 52.632 13.44 7.07 45.60 3.16
1305 1390 0.901124 ATTTGCGGCTTGCCCAATTA 59.099 45.000 13.44 4.10 45.60 1.40
1306 1391 0.901124 TTTGCGGCTTGCCCAATTAT 59.099 45.000 13.44 0.00 45.60 1.28
1307 1392 1.769026 TTGCGGCTTGCCCAATTATA 58.231 45.000 6.02 0.00 45.60 0.98
1308 1393 1.028905 TGCGGCTTGCCCAATTATAC 58.971 50.000 6.02 0.00 45.60 1.47
1309 1394 1.318576 GCGGCTTGCCCAATTATACT 58.681 50.000 6.02 0.00 37.76 2.12
1310 1395 1.001378 GCGGCTTGCCCAATTATACTG 60.001 52.381 6.02 0.00 37.76 2.74
1317 1406 7.538575 GGCTTGCCCAATTATACTGTATTATG 58.461 38.462 5.52 3.45 0.00 1.90
1318 1407 7.393234 GGCTTGCCCAATTATACTGTATTATGA 59.607 37.037 5.52 0.00 0.00 2.15
1319 1408 8.792633 GCTTGCCCAATTATACTGTATTATGAA 58.207 33.333 5.52 0.00 0.00 2.57
1341 1430 4.911390 AGTGGTCAAAGAGGATGTTAAGG 58.089 43.478 0.00 0.00 0.00 2.69
1346 1435 5.181433 GGTCAAAGAGGATGTTAAGGTGTTC 59.819 44.000 0.00 0.00 0.00 3.18
1368 1457 9.886132 TGTTCCTATAGTTAGATTTTCCACTTC 57.114 33.333 0.00 0.00 0.00 3.01
1408 1497 2.988010 TGATATGCTCAGTGGTGGAC 57.012 50.000 0.00 0.00 0.00 4.02
1453 1545 5.902613 TGAAACTTTGATGCTATCCTTGG 57.097 39.130 0.00 0.00 0.00 3.61
1461 1553 7.397192 ACTTTGATGCTATCCTTGGTTTGTTAT 59.603 33.333 0.00 0.00 0.00 1.89
1501 1593 1.871039 TGCAACTCTTACCGTTTGCTC 59.129 47.619 6.70 0.00 0.00 4.26
1505 1597 2.767505 ACTCTTACCGTTTGCTCCAAG 58.232 47.619 0.00 0.00 0.00 3.61
1599 1691 4.331168 GCAGCACTAGTTATTTCCTCACTG 59.669 45.833 0.00 0.00 0.00 3.66
1606 1698 7.226720 CACTAGTTATTTCCTCACTGTTGTGTT 59.773 37.037 0.00 0.00 44.14 3.32
1630 1727 9.956720 GTTCATTCTATACATTGCTAATTTGCT 57.043 29.630 12.99 0.00 0.00 3.91
1643 1740 7.586714 TGCTAATTTGCTATGATCTACATCG 57.413 36.000 12.99 0.00 40.07 3.84
1771 1871 3.570540 TGATGCTGCCTCTGTAGATAGT 58.429 45.455 6.49 0.00 0.00 2.12
1773 1873 5.140454 TGATGCTGCCTCTGTAGATAGTAA 58.860 41.667 6.49 0.00 0.00 2.24
1774 1874 5.598417 TGATGCTGCCTCTGTAGATAGTAAA 59.402 40.000 6.49 0.00 0.00 2.01
1920 2020 2.821378 CTGCCCAGATCATTGTTCAACA 59.179 45.455 0.00 0.00 0.00 3.33
1922 2022 3.005684 TGCCCAGATCATTGTTCAACAAC 59.994 43.478 4.73 0.00 41.40 3.32
1934 2034 5.185668 TGTTCAACAACCTCATGAATGTG 57.814 39.130 8.68 4.02 35.70 3.21
1940 2042 7.220740 TCAACAACCTCATGAATGTGTAACTA 58.779 34.615 8.68 0.00 38.04 2.24
1945 2047 9.161629 CAACCTCATGAATGTGTAACTATTGTA 57.838 33.333 0.00 0.00 38.04 2.41
1964 2066 5.204409 TGTACTCACGTGTCCTTGTTATT 57.796 39.130 16.51 0.00 0.00 1.40
2001 2103 1.671742 CAGGTACGGTGCCAGTCTT 59.328 57.895 17.72 0.00 0.00 3.01
2076 2178 4.729868 AGTTCTGTGGCAAGGTAAATCTT 58.270 39.130 0.00 0.00 0.00 2.40
2079 2181 3.751175 TCTGTGGCAAGGTAAATCTTTCG 59.249 43.478 0.00 0.00 0.00 3.46
2090 2192 9.855021 CAAGGTAAATCTTTCGATGGTTTTATT 57.145 29.630 3.14 0.00 0.00 1.40
2106 2213 6.638873 TGGTTTTATTGATTACTTGCGTTGTG 59.361 34.615 0.00 0.00 0.00 3.33
2143 2250 0.836606 TCTGCTGGTGGTTCAACTGA 59.163 50.000 0.00 0.00 0.00 3.41
2184 2293 3.727726 AGTGTTTTTGGCATTTGGCTAC 58.272 40.909 5.67 0.33 44.01 3.58
2198 2307 6.237915 GCATTTGGCTACATTGAAATTAGCAC 60.238 38.462 9.69 2.22 40.09 4.40
2292 2454 7.618137 TGGTTTAGAGGATAACTACTTGGTTC 58.382 38.462 0.00 0.00 0.00 3.62
2378 2547 7.424803 CCTTTGTATTGTCATGAGTTGTTTGA 58.575 34.615 0.00 0.00 0.00 2.69
2384 2553 9.944663 GTATTGTCATGAGTTGTTTGAGTTTAA 57.055 29.630 0.00 0.00 0.00 1.52
2386 2555 8.854979 TTGTCATGAGTTGTTTGAGTTTAATG 57.145 30.769 0.00 0.00 0.00 1.90
2391 2560 4.620982 AGTTGTTTGAGTTTAATGCCTGC 58.379 39.130 0.00 0.00 0.00 4.85
2438 2609 6.338146 TCTAGATAGGGAACAATGAACAACG 58.662 40.000 0.00 0.00 0.00 4.10
2465 2636 7.946237 GCTTTTGATTGTTTTGTATGATGAACG 59.054 33.333 0.00 0.00 0.00 3.95
2537 2708 9.806203 TTGGCAGAATATGAAGAATTGTTATTG 57.194 29.630 0.00 0.00 0.00 1.90
2557 2728 0.595095 CAGGCTGTTGCAGTCCTTTC 59.405 55.000 6.28 0.00 36.67 2.62
2558 2729 0.475906 AGGCTGTTGCAGTCCTTTCT 59.524 50.000 0.00 0.00 36.67 2.52
2594 2765 5.898972 ACATGCATATGGATTTTGTAACCCT 59.101 36.000 7.03 0.00 38.66 4.34
2595 2766 5.850557 TGCATATGGATTTTGTAACCCTG 57.149 39.130 4.56 0.00 0.00 4.45
2596 2767 5.268387 TGCATATGGATTTTGTAACCCTGT 58.732 37.500 4.56 0.00 0.00 4.00
2600 2771 7.920682 GCATATGGATTTTGTAACCCTGTTAAG 59.079 37.037 4.56 0.00 0.00 1.85
2636 2807 6.613755 TGCTTCTTTTAACACTTGTAGACC 57.386 37.500 0.00 0.00 0.00 3.85
2678 2851 4.407296 CCCACCAGCTCTTTATTCTAGTCT 59.593 45.833 0.00 0.00 0.00 3.24
2688 2861 9.810545 GCTCTTTATTCTAGTCTCTTTACACAT 57.189 33.333 0.00 0.00 0.00 3.21
2780 2954 4.393062 TCTCCTCGCTTGATTCAATGTTTC 59.607 41.667 0.00 0.00 0.00 2.78
2966 3141 4.244066 CTGCTCTACCATATGTGCTCATC 58.756 47.826 4.19 0.00 35.70 2.92
3059 3234 1.746727 CTGAAGCTTGATCGCGGTCG 61.747 60.000 15.74 1.95 34.40 4.79
3104 3279 3.808116 TTGTAGTTCAGACGAGACTCG 57.192 47.619 22.97 22.97 46.93 4.18
3183 3359 1.066605 TCTGAAAGTATCCGGCTACGC 59.933 52.381 9.70 4.77 34.95 4.42
3186 3362 2.689471 TGAAAGTATCCGGCTACGCTAA 59.311 45.455 9.70 0.00 39.22 3.09
3226 3402 3.057806 TCGTGCTTAGTTGATCGTCTGAA 60.058 43.478 0.60 0.00 0.00 3.02
3263 3439 4.035091 TGTGTCGTTGGTTCTTGAATCTTG 59.965 41.667 0.00 0.00 0.00 3.02
3332 3508 4.083643 GCATCTGTGCGTCTATTTGCATAT 60.084 41.667 0.00 0.00 43.96 1.78
3394 3570 8.956426 TGAACAGAAAATTTACTTGACTTGACT 58.044 29.630 0.00 0.00 0.00 3.41
3396 3572 8.506168 ACAGAAAATTTACTTGACTTGACTGA 57.494 30.769 0.00 0.00 0.00 3.41
3398 3574 7.584123 CAGAAAATTTACTTGACTTGACTGACG 59.416 37.037 0.00 0.00 0.00 4.35
3406 3582 0.396435 ACTTGACTGACGGGATTGCA 59.604 50.000 0.00 0.00 0.00 4.08
3411 3587 0.615331 ACTGACGGGATTGCACTCAT 59.385 50.000 6.38 0.00 0.00 2.90
3412 3588 1.012086 CTGACGGGATTGCACTCATG 58.988 55.000 6.38 0.14 0.00 3.07
3415 3591 2.170397 TGACGGGATTGCACTCATGTAT 59.830 45.455 6.38 0.00 0.00 2.29
3416 3592 2.802816 GACGGGATTGCACTCATGTATC 59.197 50.000 6.38 0.00 0.00 2.24
3418 3594 3.118261 ACGGGATTGCACTCATGTATCTT 60.118 43.478 6.38 0.00 0.00 2.40
3419 3595 3.879295 CGGGATTGCACTCATGTATCTTT 59.121 43.478 6.38 0.00 0.00 2.52
3420 3596 4.260907 CGGGATTGCACTCATGTATCTTTG 60.261 45.833 6.38 0.00 0.00 2.77
3421 3597 4.498682 GGGATTGCACTCATGTATCTTTGC 60.499 45.833 6.38 0.00 0.00 3.68
3422 3598 4.337555 GGATTGCACTCATGTATCTTTGCT 59.662 41.667 6.38 0.00 0.00 3.91
3423 3599 5.163581 GGATTGCACTCATGTATCTTTGCTT 60.164 40.000 6.38 0.00 0.00 3.91
3425 3601 6.816134 TTGCACTCATGTATCTTTGCTTTA 57.184 33.333 0.00 0.00 0.00 1.85
3427 3603 7.395190 TGCACTCATGTATCTTTGCTTTATT 57.605 32.000 0.00 0.00 0.00 1.40
3429 3605 7.094248 TGCACTCATGTATCTTTGCTTTATTGT 60.094 33.333 0.00 0.00 0.00 2.71
3430 3606 7.756722 GCACTCATGTATCTTTGCTTTATTGTT 59.243 33.333 0.00 0.00 0.00 2.83
3431 3607 9.282247 CACTCATGTATCTTTGCTTTATTGTTC 57.718 33.333 0.00 0.00 0.00 3.18
3432 3608 9.013229 ACTCATGTATCTTTGCTTTATTGTTCA 57.987 29.630 0.00 0.00 0.00 3.18
3434 3610 9.791820 TCATGTATCTTTGCTTTATTGTTCATG 57.208 29.630 0.00 0.00 0.00 3.07
3435 3611 9.577110 CATGTATCTTTGCTTTATTGTTCATGT 57.423 29.630 0.00 0.00 0.00 3.21
3444 3620 9.900710 TTGCTTTATTGTTCATGTTAATTACGT 57.099 25.926 0.00 0.00 0.00 3.57
3456 3632 9.589111 TCATGTTAATTACGTAGCTTAATCACA 57.411 29.630 12.67 9.12 0.00 3.58
3460 3636 9.155053 GTTAATTACGTAGCTTAATCACATTGC 57.845 33.333 12.67 0.00 0.00 3.56
3461 3637 6.918892 ATTACGTAGCTTAATCACATTGCA 57.081 33.333 0.00 0.00 0.00 4.08
3462 3638 6.729391 TTACGTAGCTTAATCACATTGCAA 57.271 33.333 0.00 0.00 0.00 4.08
3463 3639 5.818136 ACGTAGCTTAATCACATTGCAAT 57.182 34.783 5.99 5.99 0.00 3.56
3464 3640 6.194796 ACGTAGCTTAATCACATTGCAATT 57.805 33.333 9.83 0.00 0.00 2.32
3465 3641 6.620678 ACGTAGCTTAATCACATTGCAATTT 58.379 32.000 9.83 0.00 0.00 1.82
3466 3642 6.527722 ACGTAGCTTAATCACATTGCAATTTG 59.472 34.615 17.67 17.67 0.00 2.32
3467 3643 5.789710 AGCTTAATCACATTGCAATTTGC 57.210 34.783 18.72 14.49 45.29 3.68
3468 3644 5.484715 AGCTTAATCACATTGCAATTTGCT 58.515 33.333 21.19 8.26 45.31 3.91
3469 3645 5.935789 AGCTTAATCACATTGCAATTTGCTT 59.064 32.000 21.19 17.43 45.31 3.91
3470 3646 6.428771 AGCTTAATCACATTGCAATTTGCTTT 59.571 30.769 21.19 16.04 45.31 3.51
3471 3647 7.040961 AGCTTAATCACATTGCAATTTGCTTTT 60.041 29.630 21.19 14.07 45.31 2.27
3472 3648 7.060174 GCTTAATCACATTGCAATTTGCTTTTG 59.940 33.333 21.19 16.74 45.31 2.44
3474 3650 3.003482 TCACATTGCAATTTGCTTTTGCC 59.997 39.130 21.19 0.00 46.97 4.52
3475 3651 2.950309 ACATTGCAATTTGCTTTTGCCA 59.050 36.364 21.19 5.93 46.97 4.92
3476 3652 3.570550 ACATTGCAATTTGCTTTTGCCAT 59.429 34.783 21.19 7.60 46.97 4.40
3477 3653 4.760715 ACATTGCAATTTGCTTTTGCCATA 59.239 33.333 21.19 0.00 46.97 2.74
3478 3654 5.241064 ACATTGCAATTTGCTTTTGCCATAA 59.759 32.000 21.19 5.36 46.97 1.90
3479 3655 5.961396 TTGCAATTTGCTTTTGCCATAAT 57.039 30.435 21.19 0.00 46.97 1.28
3480 3656 7.120873 ACATTGCAATTTGCTTTTGCCATAATA 59.879 29.630 21.19 0.00 46.97 0.98
3481 3657 7.627298 TTGCAATTTGCTTTTGCCATAATAT 57.373 28.000 21.19 0.00 46.97 1.28
3482 3658 7.627298 TGCAATTTGCTTTTGCCATAATATT 57.373 28.000 21.19 0.00 46.97 1.28
3483 3659 8.053026 TGCAATTTGCTTTTGCCATAATATTT 57.947 26.923 21.19 0.00 46.97 1.40
3484 3660 8.521176 TGCAATTTGCTTTTGCCATAATATTTT 58.479 25.926 21.19 0.00 46.97 1.82
3485 3661 9.012448 GCAATTTGCTTTTGCCATAATATTTTC 57.988 29.630 14.11 0.00 46.87 2.29
3506 3682 7.452880 TTTCTTAATGTCATGAAGTTCCTGG 57.547 36.000 9.41 0.00 0.00 4.45
3507 3683 6.373005 TCTTAATGTCATGAAGTTCCTGGA 57.627 37.500 9.41 0.00 0.00 3.86
3508 3684 6.409704 TCTTAATGTCATGAAGTTCCTGGAG 58.590 40.000 9.41 0.00 0.00 3.86
3509 3685 3.641434 ATGTCATGAAGTTCCTGGAGG 57.359 47.619 0.00 0.00 0.00 4.30
3510 3686 1.630369 TGTCATGAAGTTCCTGGAGGG 59.370 52.381 0.00 0.00 35.41 4.30
3511 3687 1.909302 GTCATGAAGTTCCTGGAGGGA 59.091 52.381 0.00 0.00 43.41 4.20
3521 3697 1.628846 TCCTGGAGGGAAAGTTAGTGC 59.371 52.381 0.00 0.00 41.91 4.40
3522 3698 1.630878 CCTGGAGGGAAAGTTAGTGCT 59.369 52.381 0.00 0.00 37.23 4.40
3523 3699 2.040412 CCTGGAGGGAAAGTTAGTGCTT 59.960 50.000 0.00 0.00 37.23 3.91
3524 3700 3.077359 CTGGAGGGAAAGTTAGTGCTTG 58.923 50.000 0.00 0.00 0.00 4.01
3525 3701 2.441750 TGGAGGGAAAGTTAGTGCTTGT 59.558 45.455 0.00 0.00 0.00 3.16
3526 3702 3.075148 GGAGGGAAAGTTAGTGCTTGTC 58.925 50.000 0.00 0.00 0.00 3.18
3527 3703 3.075148 GAGGGAAAGTTAGTGCTTGTCC 58.925 50.000 0.00 0.00 0.00 4.02
3528 3704 2.441750 AGGGAAAGTTAGTGCTTGTCCA 59.558 45.455 0.00 0.00 32.44 4.02
3529 3705 3.117663 AGGGAAAGTTAGTGCTTGTCCAA 60.118 43.478 0.00 0.00 32.44 3.53
3530 3706 3.826729 GGGAAAGTTAGTGCTTGTCCAAT 59.173 43.478 0.00 0.00 32.44 3.16
3531 3707 4.082733 GGGAAAGTTAGTGCTTGTCCAATC 60.083 45.833 0.00 0.00 32.44 2.67
3532 3708 4.082733 GGAAAGTTAGTGCTTGTCCAATCC 60.083 45.833 0.00 0.00 31.80 3.01
3533 3709 4.373156 AAGTTAGTGCTTGTCCAATCCT 57.627 40.909 0.00 0.00 0.00 3.24
3534 3710 3.679389 AGTTAGTGCTTGTCCAATCCTG 58.321 45.455 0.00 0.00 0.00 3.86
3535 3711 2.113860 TAGTGCTTGTCCAATCCTGC 57.886 50.000 0.00 0.00 0.00 4.85
3536 3712 0.403271 AGTGCTTGTCCAATCCTGCT 59.597 50.000 0.00 0.00 0.00 4.24
3537 3713 0.524862 GTGCTTGTCCAATCCTGCTG 59.475 55.000 0.00 0.00 0.00 4.41
3538 3714 0.401356 TGCTTGTCCAATCCTGCTGA 59.599 50.000 0.00 0.00 0.00 4.26
3539 3715 1.202915 TGCTTGTCCAATCCTGCTGAA 60.203 47.619 0.00 0.00 0.00 3.02
3540 3716 1.471684 GCTTGTCCAATCCTGCTGAAG 59.528 52.381 0.00 0.00 0.00 3.02
3541 3717 2.787994 CTTGTCCAATCCTGCTGAAGT 58.212 47.619 0.00 0.00 0.00 3.01
3542 3718 3.869912 GCTTGTCCAATCCTGCTGAAGTA 60.870 47.826 0.00 0.00 0.00 2.24
3543 3719 4.521146 CTTGTCCAATCCTGCTGAAGTAT 58.479 43.478 0.00 0.00 0.00 2.12
3544 3720 5.674525 CTTGTCCAATCCTGCTGAAGTATA 58.325 41.667 0.00 0.00 0.00 1.47
3545 3721 5.023533 TGTCCAATCCTGCTGAAGTATAC 57.976 43.478 0.00 0.00 0.00 1.47
3546 3722 4.469586 TGTCCAATCCTGCTGAAGTATACA 59.530 41.667 5.50 0.00 0.00 2.29
3547 3723 5.045942 TGTCCAATCCTGCTGAAGTATACAA 60.046 40.000 5.50 0.00 0.00 2.41
3548 3724 5.880332 GTCCAATCCTGCTGAAGTATACAAA 59.120 40.000 5.50 0.00 0.00 2.83
3549 3725 6.543831 GTCCAATCCTGCTGAAGTATACAAAT 59.456 38.462 5.50 0.00 0.00 2.32
3550 3726 7.067494 GTCCAATCCTGCTGAAGTATACAAATT 59.933 37.037 5.50 0.00 0.00 1.82
3551 3727 7.067372 TCCAATCCTGCTGAAGTATACAAATTG 59.933 37.037 5.50 0.00 0.00 2.32
3552 3728 7.148018 CCAATCCTGCTGAAGTATACAAATTGT 60.148 37.037 3.43 3.43 0.00 2.71
3553 3729 6.985188 TCCTGCTGAAGTATACAAATTGTC 57.015 37.500 0.22 0.00 0.00 3.18
3554 3730 6.711277 TCCTGCTGAAGTATACAAATTGTCT 58.289 36.000 0.22 0.00 0.00 3.41
3555 3731 7.168219 TCCTGCTGAAGTATACAAATTGTCTT 58.832 34.615 0.22 0.00 0.00 3.01
3556 3732 7.334421 TCCTGCTGAAGTATACAAATTGTCTTC 59.666 37.037 15.09 15.09 34.02 2.87
3557 3733 7.060600 TGCTGAAGTATACAAATTGTCTTCG 57.939 36.000 16.19 13.08 35.51 3.79
3558 3734 6.649141 TGCTGAAGTATACAAATTGTCTTCGT 59.351 34.615 16.19 0.57 35.51 3.85
3559 3735 6.955963 GCTGAAGTATACAAATTGTCTTCGTG 59.044 38.462 16.19 13.42 35.51 4.35
3560 3736 7.360101 GCTGAAGTATACAAATTGTCTTCGTGT 60.360 37.037 16.19 0.00 35.51 4.49
3561 3737 8.014322 TGAAGTATACAAATTGTCTTCGTGTC 57.986 34.615 16.19 4.37 35.51 3.67
3562 3738 7.654116 TGAAGTATACAAATTGTCTTCGTGTCA 59.346 33.333 16.19 6.29 35.51 3.58
3563 3739 8.547967 AAGTATACAAATTGTCTTCGTGTCAT 57.452 30.769 0.22 0.00 0.00 3.06
3564 3740 8.547967 AGTATACAAATTGTCTTCGTGTCATT 57.452 30.769 0.22 0.00 0.00 2.57
3565 3741 9.647797 AGTATACAAATTGTCTTCGTGTCATTA 57.352 29.630 0.22 0.00 0.00 1.90
3570 3746 9.607285 ACAAATTGTCTTCGTGTCATTAAATAC 57.393 29.630 0.00 0.00 0.00 1.89
3571 3747 9.061610 CAAATTGTCTTCGTGTCATTAAATACC 57.938 33.333 0.00 0.00 0.00 2.73
3572 3748 6.730960 TTGTCTTCGTGTCATTAAATACCC 57.269 37.500 0.00 0.00 0.00 3.69
3573 3749 6.045072 TGTCTTCGTGTCATTAAATACCCT 57.955 37.500 0.00 0.00 0.00 4.34
3574 3750 5.872617 TGTCTTCGTGTCATTAAATACCCTG 59.127 40.000 0.00 0.00 0.00 4.45
3575 3751 5.293569 GTCTTCGTGTCATTAAATACCCTGG 59.706 44.000 0.00 0.00 0.00 4.45
3576 3752 4.145365 TCGTGTCATTAAATACCCTGGG 57.855 45.455 12.28 12.28 0.00 4.45
3577 3753 2.616842 CGTGTCATTAAATACCCTGGGC 59.383 50.000 14.08 0.00 0.00 5.36
3578 3754 2.956333 GTGTCATTAAATACCCTGGGCC 59.044 50.000 14.08 0.00 0.00 5.80
3579 3755 2.583101 TGTCATTAAATACCCTGGGCCA 59.417 45.455 14.08 5.85 0.00 5.36
3580 3756 3.206412 TGTCATTAAATACCCTGGGCCAT 59.794 43.478 14.08 3.30 0.00 4.40
3581 3757 4.223144 GTCATTAAATACCCTGGGCCATT 58.777 43.478 14.08 10.00 0.00 3.16
3582 3758 5.103473 TGTCATTAAATACCCTGGGCCATTA 60.103 40.000 14.08 6.62 0.00 1.90
3583 3759 5.243060 GTCATTAAATACCCTGGGCCATTAC 59.757 44.000 14.08 4.00 0.00 1.89
3584 3760 5.135362 TCATTAAATACCCTGGGCCATTACT 59.865 40.000 14.08 1.69 0.00 2.24
3585 3761 3.595190 AAATACCCTGGGCCATTACTC 57.405 47.619 14.08 0.00 0.00 2.59
3586 3762 2.514726 ATACCCTGGGCCATTACTCT 57.485 50.000 14.08 0.00 0.00 3.24
3587 3763 2.280308 TACCCTGGGCCATTACTCTT 57.720 50.000 14.08 0.00 0.00 2.85
3588 3764 2.280308 ACCCTGGGCCATTACTCTTA 57.720 50.000 14.08 0.00 0.00 2.10
3589 3765 2.789219 ACCCTGGGCCATTACTCTTAT 58.211 47.619 14.08 0.00 0.00 1.73
3590 3766 3.949430 ACCCTGGGCCATTACTCTTATA 58.051 45.455 14.08 0.00 0.00 0.98
3594 3770 6.564927 ACCCTGGGCCATTACTCTTATATAAA 59.435 38.462 14.08 0.00 0.00 1.40
3609 3785 8.547481 TCTTATATAAACTCCCAGATGTCACA 57.453 34.615 0.00 0.00 0.00 3.58
3613 3789 2.680312 ACTCCCAGATGTCACATTCG 57.320 50.000 0.00 0.00 0.00 3.34
3615 3791 0.612744 TCCCAGATGTCACATTCGCA 59.387 50.000 0.00 0.00 0.00 5.10
3622 3798 2.617250 TGTCACATTCGCATTGCTTC 57.383 45.000 7.12 0.00 0.00 3.86
3629 3805 0.036732 TTCGCATTGCTTCTGGGACT 59.963 50.000 7.12 0.00 35.58 3.85
3630 3806 0.674581 TCGCATTGCTTCTGGGACTG 60.675 55.000 7.12 0.00 31.46 3.51
3645 3821 3.118775 TGGGACTGTTATGAAGGTCATCG 60.119 47.826 0.00 0.00 38.26 3.84
3647 3823 4.504858 GGACTGTTATGAAGGTCATCGTT 58.495 43.478 0.00 0.00 38.26 3.85
3649 3825 3.684788 ACTGTTATGAAGGTCATCGTTGC 59.315 43.478 0.00 0.00 38.26 4.17
3650 3826 3.935203 CTGTTATGAAGGTCATCGTTGCT 59.065 43.478 0.00 0.00 38.26 3.91
3651 3827 4.323417 TGTTATGAAGGTCATCGTTGCTT 58.677 39.130 0.00 0.00 38.26 3.91
3657 3861 2.625737 AGGTCATCGTTGCTTCTGATG 58.374 47.619 0.00 0.00 40.61 3.07
3665 3869 2.373540 TTGCTTCTGATGCAATTGCC 57.626 45.000 26.94 13.43 44.24 4.52
3671 3875 2.250031 TCTGATGCAATTGCCCAGTTT 58.750 42.857 31.42 13.39 39.80 2.66
3684 3888 2.758009 CCCAGTTTGGACAATTGCTTG 58.242 47.619 5.05 0.00 40.96 4.01
3693 3897 4.397420 TGGACAATTGCTTGTGTATCACT 58.603 39.130 5.05 0.00 45.57 3.41
3696 3900 6.658816 TGGACAATTGCTTGTGTATCACTAAT 59.341 34.615 5.05 0.00 45.57 1.73
3702 3906 7.921786 TTGCTTGTGTATCACTAATTTAGCT 57.078 32.000 3.28 0.00 35.11 3.32
3706 3923 8.279103 GCTTGTGTATCACTAATTTAGCTGATC 58.721 37.037 17.33 12.64 35.11 2.92
3723 3940 4.272991 GCTGATCAAGAGATACTTTGCTGG 59.727 45.833 0.00 0.00 36.61 4.85
3726 3943 3.942829 TCAAGAGATACTTTGCTGGTGG 58.057 45.455 0.00 0.00 36.61 4.61
3732 3949 3.785887 AGATACTTTGCTGGTGGGGATAA 59.214 43.478 0.00 0.00 0.00 1.75
3733 3950 2.514458 ACTTTGCTGGTGGGGATAAG 57.486 50.000 0.00 0.00 0.00 1.73
3734 3951 1.005924 ACTTTGCTGGTGGGGATAAGG 59.994 52.381 0.00 0.00 0.00 2.69
3737 3954 1.974028 TGCTGGTGGGGATAAGGTTA 58.026 50.000 0.00 0.00 0.00 2.85
3748 3965 5.607171 TGGGGATAAGGTTAGGAGAAAGATC 59.393 44.000 0.00 0.00 0.00 2.75
3749 3966 5.847265 GGGGATAAGGTTAGGAGAAAGATCT 59.153 44.000 0.00 0.00 39.10 2.75
3777 3994 8.646900 TGATTTTTAAATATAAGCCCCATGACC 58.353 33.333 0.00 0.00 0.00 4.02
3778 3995 6.987403 TTTTAAATATAAGCCCCATGACCC 57.013 37.500 0.00 0.00 0.00 4.46
3779 3996 5.671463 TTAAATATAAGCCCCATGACCCA 57.329 39.130 0.00 0.00 0.00 4.51
3780 3997 3.814504 AATATAAGCCCCATGACCCAG 57.185 47.619 0.00 0.00 0.00 4.45
3781 3998 2.505672 TATAAGCCCCATGACCCAGA 57.494 50.000 0.00 0.00 0.00 3.86
3782 3999 0.846693 ATAAGCCCCATGACCCAGAC 59.153 55.000 0.00 0.00 0.00 3.51
3783 4000 0.253160 TAAGCCCCATGACCCAGACT 60.253 55.000 0.00 0.00 0.00 3.24
3784 4001 1.142688 AAGCCCCATGACCCAGACTT 61.143 55.000 0.00 0.00 0.00 3.01
3785 4002 1.379044 GCCCCATGACCCAGACTTG 60.379 63.158 0.00 0.00 0.00 3.16
3786 4003 2.078452 CCCCATGACCCAGACTTGT 58.922 57.895 0.00 0.00 0.00 3.16
3787 4004 0.405585 CCCCATGACCCAGACTTGTT 59.594 55.000 0.00 0.00 0.00 2.83
3788 4005 1.203050 CCCCATGACCCAGACTTGTTT 60.203 52.381 0.00 0.00 0.00 2.83
3798 4015 2.421424 CCAGACTTGTTTATCTGCTGGC 59.579 50.000 0.00 0.00 40.92 4.85
3800 4017 2.076863 GACTTGTTTATCTGCTGGCGT 58.923 47.619 0.00 0.00 0.00 5.68
3843 4062 6.239176 GGAGTATCATGAGCTACTAAAGCAGT 60.239 42.308 8.63 0.00 46.83 4.40
3858 4077 8.571461 ACTAAAGCAGTTAAATTAGGTTACCC 57.429 34.615 0.00 0.00 31.59 3.69
3861 4080 3.065786 GCAGTTAAATTAGGTTACCCGGC 59.934 47.826 0.00 0.00 35.12 6.13
3862 4081 4.520179 CAGTTAAATTAGGTTACCCGGCT 58.480 43.478 0.00 0.00 35.12 5.52
3864 4083 6.114767 CAGTTAAATTAGGTTACCCGGCTAA 58.885 40.000 0.00 0.00 35.12 3.09
3875 4103 1.767088 ACCCGGCTAAATTAGGAGGAC 59.233 52.381 0.00 0.00 0.00 3.85
3880 4108 4.022155 CCGGCTAAATTAGGAGGACTAGTC 60.022 50.000 14.87 14.87 32.16 2.59
3882 4110 4.022155 GGCTAAATTAGGAGGACTAGTCGG 60.022 50.000 16.56 0.00 32.16 4.79
3883 4111 4.583907 GCTAAATTAGGAGGACTAGTCGGT 59.416 45.833 16.56 6.44 32.16 4.69
3884 4112 5.068855 GCTAAATTAGGAGGACTAGTCGGTT 59.931 44.000 16.56 4.92 32.16 4.44
3885 4113 5.340439 AAATTAGGAGGACTAGTCGGTTG 57.660 43.478 16.56 0.00 32.16 3.77
3886 4114 2.431954 TAGGAGGACTAGTCGGTTGG 57.568 55.000 16.56 0.00 0.00 3.77
3888 4116 1.516423 GAGGACTAGTCGGTTGGCC 59.484 63.158 16.56 0.00 0.00 5.36
3889 4117 1.957765 GAGGACTAGTCGGTTGGCCC 61.958 65.000 16.56 0.79 0.00 5.80
3892 4120 0.459078 GACTAGTCGGTTGGCCCTAC 59.541 60.000 7.22 0.00 0.00 3.18
3894 4122 1.120530 CTAGTCGGTTGGCCCTACAT 58.879 55.000 0.00 0.00 0.00 2.29
3895 4123 2.313317 CTAGTCGGTTGGCCCTACATA 58.687 52.381 0.00 0.00 0.00 2.29
3907 4144 6.634889 TGGCCCTACATATATATTCTTGCA 57.365 37.500 0.00 0.00 0.00 4.08
3922 4159 8.836268 ATATTCTTGCAAATGAACACATTGTT 57.164 26.923 0.00 0.00 44.37 2.83
3923 4160 9.926158 ATATTCTTGCAAATGAACACATTGTTA 57.074 25.926 0.00 0.00 41.28 2.41
3924 4161 7.462109 TTCTTGCAAATGAACACATTGTTAC 57.538 32.000 0.00 0.00 41.28 2.50
3925 4162 6.804677 TCTTGCAAATGAACACATTGTTACT 58.195 32.000 0.00 0.00 41.28 2.24
3926 4163 6.917477 TCTTGCAAATGAACACATTGTTACTC 59.083 34.615 0.00 0.00 41.28 2.59
3927 4164 6.141560 TGCAAATGAACACATTGTTACTCA 57.858 33.333 0.00 0.00 41.28 3.41
3928 4165 6.747125 TGCAAATGAACACATTGTTACTCAT 58.253 32.000 0.00 0.00 41.28 2.90
3929 4166 6.641723 TGCAAATGAACACATTGTTACTCATG 59.358 34.615 0.00 0.00 41.28 3.07
3930 4167 6.642131 GCAAATGAACACATTGTTACTCATGT 59.358 34.615 0.00 0.00 41.28 3.21
3931 4168 7.169645 GCAAATGAACACATTGTTACTCATGTT 59.830 33.333 0.00 0.00 41.28 2.71
3932 4169 8.693504 CAAATGAACACATTGTTACTCATGTTC 58.306 33.333 7.75 7.75 41.28 3.18
3933 4170 6.934048 TGAACACATTGTTACTCATGTTCA 57.066 33.333 12.28 12.28 44.30 3.18
3934 4171 7.509141 TGAACACATTGTTACTCATGTTCAT 57.491 32.000 12.28 1.47 42.99 2.57
3935 4172 7.361894 TGAACACATTGTTACTCATGTTCATG 58.638 34.615 12.28 6.46 42.99 3.07
3936 4173 6.882610 ACACATTGTTACTCATGTTCATGT 57.117 33.333 11.73 0.00 0.00 3.21
3937 4174 7.275888 ACACATTGTTACTCATGTTCATGTT 57.724 32.000 11.73 4.42 0.00 2.71
3938 4175 7.362662 ACACATTGTTACTCATGTTCATGTTC 58.637 34.615 11.73 0.00 0.00 3.18
3939 4176 6.803320 CACATTGTTACTCATGTTCATGTTCC 59.197 38.462 11.73 0.36 0.00 3.62
3940 4177 6.716628 ACATTGTTACTCATGTTCATGTTCCT 59.283 34.615 11.73 0.00 0.00 3.36
3941 4178 7.882791 ACATTGTTACTCATGTTCATGTTCCTA 59.117 33.333 11.73 0.00 0.00 2.94
3954 4191 6.573664 TCATGTTCCTACTGTTTGGAAATG 57.426 37.500 13.86 16.35 43.06 2.32
3961 4198 6.126409 TCCTACTGTTTGGAAATGAACTGTT 58.874 36.000 0.00 0.00 0.00 3.16
3963 4200 5.262588 ACTGTTTGGAAATGAACTGTTCC 57.737 39.130 17.26 3.38 43.15 3.62
3965 4202 5.067805 ACTGTTTGGAAATGAACTGTTCCTC 59.932 40.000 17.26 10.92 43.24 3.71
3966 4203 4.340950 TGTTTGGAAATGAACTGTTCCTCC 59.659 41.667 17.26 18.30 43.24 4.30
4030 4292 9.474249 GTATTTTTAGTTCTAGTTCGCATGTTC 57.526 33.333 0.00 0.00 0.00 3.18
4041 4303 8.390354 TCTAGTTCGCATGTTCAAATTTCATAG 58.610 33.333 0.00 0.00 0.00 2.23
4042 4304 7.144722 AGTTCGCATGTTCAAATTTCATAGA 57.855 32.000 0.00 0.00 0.00 1.98
4043 4305 7.246311 AGTTCGCATGTTCAAATTTCATAGAG 58.754 34.615 0.00 0.00 0.00 2.43
4044 4306 6.741992 TCGCATGTTCAAATTTCATAGAGT 57.258 33.333 0.00 0.00 0.00 3.24
4045 4307 7.841915 TCGCATGTTCAAATTTCATAGAGTA 57.158 32.000 0.00 0.00 0.00 2.59
4046 4308 8.437360 TCGCATGTTCAAATTTCATAGAGTAT 57.563 30.769 0.00 0.00 0.00 2.12
4047 4309 9.541143 TCGCATGTTCAAATTTCATAGAGTATA 57.459 29.630 0.00 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
319 353 5.147330 TGATTTGTCATCTGTTCGTACCT 57.853 39.130 0.00 0.00 0.00 3.08
330 364 9.941991 CGTCATAAAAATGTTTGATTTGTCATC 57.058 29.630 0.00 0.00 0.00 2.92
354 389 1.206371 CCCTCGGGTCACTAAATTCGT 59.794 52.381 0.00 0.00 0.00 3.85
551 616 5.991328 ACCATACTTTCGATAGCACAATG 57.009 39.130 2.50 2.81 0.00 2.82
658 723 7.041508 GGAGTAATAATTGACCTGCTCATCAAG 60.042 40.741 0.00 0.00 38.19 3.02
743 808 3.384168 ACTATGGGCCACATGAGAGTTA 58.616 45.455 9.28 0.00 40.82 2.24
766 831 2.320681 AGTGAGGTGTAGCCCAACTA 57.679 50.000 0.00 0.00 42.71 2.24
827 895 1.133792 GGCTGGGCTAAGGCTTATCAA 60.134 52.381 7.54 0.00 39.56 2.57
1021 1104 0.750850 TCAGAGCCGCCATAGGTAAC 59.249 55.000 0.00 0.00 0.00 2.50
1022 1105 1.618837 GATCAGAGCCGCCATAGGTAA 59.381 52.381 0.00 0.00 0.00 2.85
1025 1108 1.294780 GGATCAGAGCCGCCATAGG 59.705 63.158 0.00 0.00 0.00 2.57
1062 1145 3.744559 GGCACGAAGGCTGAAACA 58.255 55.556 0.00 0.00 40.24 2.83
1094 1179 1.555075 TCGCAAACCTAGATGCTTCCT 59.445 47.619 11.59 0.00 40.39 3.36
1099 1184 2.939103 AGACAATCGCAAACCTAGATGC 59.061 45.455 0.00 0.00 39.17 3.91
1111 1196 0.445436 CAAGCCACTCAGACAATCGC 59.555 55.000 0.00 0.00 0.00 4.58
1114 1199 1.242076 GTGCAAGCCACTCAGACAAT 58.758 50.000 0.00 0.00 41.35 2.71
1119 1204 2.610694 CCGTGTGCAAGCCACTCAG 61.611 63.158 4.63 0.00 44.92 3.35
1130 1215 2.550830 ATTCATAGATCCCCGTGTGC 57.449 50.000 0.00 0.00 0.00 4.57
1131 1216 4.283467 TCCTTATTCATAGATCCCCGTGTG 59.717 45.833 0.00 0.00 0.00 3.82
1170 1255 2.287009 GCAGACCAAAACCACGAGAAAG 60.287 50.000 0.00 0.00 0.00 2.62
1221 1306 7.038154 AGTTTACTCTAGATCTGACAGATGC 57.962 40.000 22.64 13.36 34.53 3.91
1236 1321 1.375523 CCGCCGGCAAGTTTACTCT 60.376 57.895 28.98 0.00 0.00 3.24
1256 1341 6.705381 CCAAGCAACACCAGATGAAAAATAAA 59.295 34.615 0.00 0.00 0.00 1.40
1257 1342 6.183360 ACCAAGCAACACCAGATGAAAAATAA 60.183 34.615 0.00 0.00 0.00 1.40
1259 1344 4.101430 ACCAAGCAACACCAGATGAAAAAT 59.899 37.500 0.00 0.00 0.00 1.82
1262 1347 2.665165 ACCAAGCAACACCAGATGAAA 58.335 42.857 0.00 0.00 0.00 2.69
1263 1348 2.363306 ACCAAGCAACACCAGATGAA 57.637 45.000 0.00 0.00 0.00 2.57
1265 1350 3.411446 TCTTACCAAGCAACACCAGATG 58.589 45.455 0.00 0.00 0.00 2.90
1266 1351 3.788227 TCTTACCAAGCAACACCAGAT 57.212 42.857 0.00 0.00 0.00 2.90
1270 1355 3.317150 GCAAATCTTACCAAGCAACACC 58.683 45.455 0.00 0.00 0.00 4.16
1276 1361 0.811281 AGCCGCAAATCTTACCAAGC 59.189 50.000 0.00 0.00 0.00 4.01
1284 1369 1.907807 TTGGGCAAGCCGCAAATCT 60.908 52.632 4.80 0.00 42.57 2.40
1296 1381 9.283768 CACTTCATAATACAGTATAATTGGGCA 57.716 33.333 0.00 0.00 0.00 5.36
1305 1390 9.823647 CTCTTTGACCACTTCATAATACAGTAT 57.176 33.333 0.00 0.00 32.84 2.12
1306 1391 8.258007 CCTCTTTGACCACTTCATAATACAGTA 58.742 37.037 0.00 0.00 32.84 2.74
1307 1392 7.038302 TCCTCTTTGACCACTTCATAATACAGT 60.038 37.037 0.00 0.00 32.84 3.55
1308 1393 7.331026 TCCTCTTTGACCACTTCATAATACAG 58.669 38.462 0.00 0.00 32.84 2.74
1309 1394 7.252612 TCCTCTTTGACCACTTCATAATACA 57.747 36.000 0.00 0.00 32.84 2.29
1310 1395 7.770897 ACATCCTCTTTGACCACTTCATAATAC 59.229 37.037 0.00 0.00 32.84 1.89
1317 1406 5.412904 CCTTAACATCCTCTTTGACCACTTC 59.587 44.000 0.00 0.00 0.00 3.01
1318 1407 5.163088 ACCTTAACATCCTCTTTGACCACTT 60.163 40.000 0.00 0.00 0.00 3.16
1319 1408 4.351111 ACCTTAACATCCTCTTTGACCACT 59.649 41.667 0.00 0.00 0.00 4.00
1341 1430 9.668497 AAGTGGAAAATCTAACTATAGGAACAC 57.332 33.333 4.43 0.00 0.00 3.32
1368 1457 5.920903 TCATATTAGTAAAACCGGTCCCAG 58.079 41.667 8.04 0.00 0.00 4.45
1475 1567 2.632377 ACGGTAAGAGTTGCATCCATG 58.368 47.619 0.00 0.00 0.00 3.66
1479 1571 2.484264 AGCAAACGGTAAGAGTTGCATC 59.516 45.455 14.72 0.00 42.54 3.91
1488 1580 4.766404 AAATCTTGGAGCAAACGGTAAG 57.234 40.909 0.00 0.00 0.00 2.34
1489 1581 4.456566 GGTAAATCTTGGAGCAAACGGTAA 59.543 41.667 0.00 0.00 0.00 2.85
1501 1593 7.011857 GCTCAGATTTCTAGTGGTAAATCTTGG 59.988 40.741 12.24 9.86 45.62 3.61
1505 1597 7.766278 TGAAGCTCAGATTTCTAGTGGTAAATC 59.234 37.037 6.54 6.54 40.72 2.17
1588 1680 5.829924 AGAATGAACACAACAGTGAGGAAAT 59.170 36.000 0.00 0.00 37.04 2.17
1630 1727 5.514274 TGACAAGCACGATGTAGATCATA 57.486 39.130 0.29 0.00 36.83 2.15
1740 1839 5.655532 ACAGAGGCAGCATCAGAAAATAATT 59.344 36.000 10.23 0.00 0.00 1.40
1743 1842 4.226427 ACAGAGGCAGCATCAGAAAATA 57.774 40.909 10.23 0.00 0.00 1.40
1744 1843 3.083122 ACAGAGGCAGCATCAGAAAAT 57.917 42.857 10.23 0.00 0.00 1.82
1773 1873 8.928733 CAAGTATAGCAAAACAGCAAAATGATT 58.071 29.630 0.00 0.00 36.85 2.57
1774 1874 8.090214 ACAAGTATAGCAAAACAGCAAAATGAT 58.910 29.630 0.00 0.00 36.85 2.45
1823 1923 4.330894 CGTCTGCACATACATCAGAAACAT 59.669 41.667 0.00 0.00 38.42 2.71
1920 2020 9.162764 GTACAATAGTTACACATTCATGAGGTT 57.837 33.333 0.00 0.00 0.00 3.50
1922 2022 8.948631 AGTACAATAGTTACACATTCATGAGG 57.051 34.615 0.00 0.00 0.00 3.86
1945 2047 5.763204 ATTGAAATAACAAGGACACGTGAGT 59.237 36.000 25.01 9.36 37.82 3.41
1964 2066 4.103469 ACCTGGTACCTACACAACATTGAA 59.897 41.667 14.36 0.00 0.00 2.69
2001 2103 4.402474 TCCATCTTCTTGATCTGCTTACGA 59.598 41.667 0.00 0.00 32.05 3.43
2076 2178 6.964370 CGCAAGTAATCAATAAAACCATCGAA 59.036 34.615 0.00 0.00 0.00 3.71
2106 2213 6.348540 CCAGCAGACACTTTACCATTCTAAAC 60.349 42.308 0.00 0.00 0.00 2.01
2143 2250 6.409704 ACACTTGTCATACAACATAGATGCT 58.590 36.000 0.00 0.00 33.96 3.79
2222 2332 7.308529 GCACATAACCTATACAATTATGCTGCA 60.309 37.037 4.13 4.13 39.64 4.41
2233 2343 7.361713 GCAAAACAAGAGCACATAACCTATACA 60.362 37.037 0.00 0.00 0.00 2.29
2245 2355 3.904571 TCATCATGCAAAACAAGAGCAC 58.095 40.909 0.00 0.00 41.60 4.40
2254 2364 5.951148 TCCTCTAAACCATCATCATGCAAAA 59.049 36.000 0.00 0.00 0.00 2.44
2292 2454 5.526115 CCAACCAGCAATTCAGCATATTAG 58.474 41.667 0.00 0.00 36.85 1.73
2349 2511 7.001674 ACAACTCATGACAATACAAAGGGTTA 58.998 34.615 0.00 0.00 0.00 2.85
2378 2547 0.804989 GACGCAGCAGGCATTAAACT 59.195 50.000 0.00 0.00 45.17 2.66
2384 2553 1.200020 GTTAAAAGACGCAGCAGGCAT 59.800 47.619 0.00 0.00 45.17 4.40
2386 2555 0.109735 GGTTAAAAGACGCAGCAGGC 60.110 55.000 0.00 0.00 39.90 4.85
2391 2560 1.069227 GCCAGTGGTTAAAAGACGCAG 60.069 52.381 11.74 0.00 0.00 5.18
2438 2609 7.887996 TCATCATACAAAACAATCAAAAGCC 57.112 32.000 0.00 0.00 0.00 4.35
2501 2672 4.337274 TCATATTCTGCCAATCAGCAAGTG 59.663 41.667 0.00 0.00 43.52 3.16
2503 2674 5.298527 TCTTCATATTCTGCCAATCAGCAAG 59.701 40.000 0.00 0.00 43.52 4.01
2523 2694 5.064441 ACAGCCTGCAATAACAATTCTTC 57.936 39.130 0.00 0.00 0.00 2.87
2537 2708 1.458639 AAAGGACTGCAACAGCCTGC 61.459 55.000 10.11 0.00 42.95 4.85
2627 2798 7.523052 GCTGTTCCATATCTAGAGGTCTACAAG 60.523 44.444 0.00 0.00 0.00 3.16
2636 2807 2.353208 GGGCGCTGTTCCATATCTAGAG 60.353 54.545 7.64 0.00 0.00 2.43
2678 2851 3.806949 AGGGCTGGAAATGTGTAAAGA 57.193 42.857 0.00 0.00 0.00 2.52
2750 2924 4.160439 TGAATCAAGCGAGGAGACTAACAT 59.840 41.667 0.00 0.00 44.43 2.71
2966 3141 3.054878 GCTGGAAATGCAGAACAACAAG 58.945 45.455 6.08 0.00 0.00 3.16
3059 3234 2.363683 CAAAGGCTCCTTGGTCAGATC 58.636 52.381 1.33 0.00 36.26 2.75
3067 3242 4.524328 ACTACAAAATCCAAAGGCTCCTTG 59.476 41.667 1.33 0.00 36.26 3.61
3113 3288 9.674068 TTGTATGTTGTCAATTTAGGCTACATA 57.326 29.630 0.00 0.00 31.89 2.29
3183 3359 7.787935 GCACGATAAACGAGATACACATTTTAG 59.212 37.037 0.00 0.00 45.77 1.85
3186 3362 5.810587 AGCACGATAAACGAGATACACATTT 59.189 36.000 0.00 0.00 45.77 2.32
3226 3402 2.429610 ACGACACACACAAAGAGTACCT 59.570 45.455 0.00 0.00 0.00 3.08
3313 3489 6.530913 AAGTATATGCAAATAGACGCACAG 57.469 37.500 0.00 0.00 41.79 3.66
3332 3508 9.803315 CAGTCTATATGAACAACAGCTAAAGTA 57.197 33.333 0.00 0.00 0.00 2.24
3354 3530 7.826260 TTTTCTGTTCAAAACATTTCCAGTC 57.174 32.000 0.00 0.00 41.26 3.51
3394 3570 0.324614 ACATGAGTGCAATCCCGTCA 59.675 50.000 12.27 0.00 0.00 4.35
3396 3572 2.435805 AGATACATGAGTGCAATCCCGT 59.564 45.455 12.27 10.93 0.00 5.28
3398 3574 4.498682 GCAAAGATACATGAGTGCAATCCC 60.499 45.833 12.27 0.00 32.29 3.85
3406 3582 9.013229 TGAACAATAAAGCAAAGATACATGAGT 57.987 29.630 0.00 0.00 0.00 3.41
3418 3594 9.900710 ACGTAATTAACATGAACAATAAAGCAA 57.099 25.926 0.00 0.00 0.00 3.91
3430 3606 9.589111 TGTGATTAAGCTACGTAATTAACATGA 57.411 29.630 12.42 5.09 0.00 3.07
3434 3610 9.155053 GCAATGTGATTAAGCTACGTAATTAAC 57.845 33.333 12.42 8.80 0.00 2.01
3435 3611 8.884726 TGCAATGTGATTAAGCTACGTAATTAA 58.115 29.630 12.51 12.51 0.00 1.40
3436 3612 8.426881 TGCAATGTGATTAAGCTACGTAATTA 57.573 30.769 0.00 0.00 0.00 1.40
3437 3613 7.315247 TGCAATGTGATTAAGCTACGTAATT 57.685 32.000 0.00 0.00 0.00 1.40
3438 3614 6.918892 TGCAATGTGATTAAGCTACGTAAT 57.081 33.333 0.00 0.00 0.00 1.89
3439 3615 6.729391 TTGCAATGTGATTAAGCTACGTAA 57.271 33.333 0.00 0.00 0.00 3.18
3440 3616 6.918892 ATTGCAATGTGATTAAGCTACGTA 57.081 33.333 12.09 0.00 0.00 3.57
3441 3617 5.818136 ATTGCAATGTGATTAAGCTACGT 57.182 34.783 12.09 0.00 0.00 3.57
3442 3618 6.506827 GCAAATTGCAATGTGATTAAGCTACG 60.507 38.462 29.92 2.63 44.26 3.51
3443 3619 6.699063 GCAAATTGCAATGTGATTAAGCTAC 58.301 36.000 29.92 7.86 44.26 3.58
3444 3620 6.890663 GCAAATTGCAATGTGATTAAGCTA 57.109 33.333 29.92 0.00 44.26 3.32
3445 3621 5.789710 GCAAATTGCAATGTGATTAAGCT 57.210 34.783 29.92 0.35 44.26 3.74
3480 3656 8.526147 CCAGGAACTTCATGACATTAAGAAAAT 58.474 33.333 14.82 0.57 34.60 1.82
3481 3657 7.723616 TCCAGGAACTTCATGACATTAAGAAAA 59.276 33.333 14.82 0.00 34.60 2.29
3482 3658 7.230747 TCCAGGAACTTCATGACATTAAGAAA 58.769 34.615 14.82 0.00 34.60 2.52
3483 3659 6.778821 TCCAGGAACTTCATGACATTAAGAA 58.221 36.000 14.82 2.12 34.60 2.52
3484 3660 6.373005 TCCAGGAACTTCATGACATTAAGA 57.627 37.500 14.82 0.00 34.60 2.10
3485 3661 5.587844 CCTCCAGGAACTTCATGACATTAAG 59.412 44.000 4.98 7.66 34.60 1.85
3486 3662 5.500234 CCTCCAGGAACTTCATGACATTAA 58.500 41.667 4.98 0.00 34.60 1.40
3487 3663 4.080356 CCCTCCAGGAACTTCATGACATTA 60.080 45.833 4.98 0.00 34.60 1.90
3488 3664 3.308688 CCCTCCAGGAACTTCATGACATT 60.309 47.826 4.98 0.00 34.60 2.71
3489 3665 2.240667 CCCTCCAGGAACTTCATGACAT 59.759 50.000 4.98 0.00 34.60 3.06
3490 3666 1.630369 CCCTCCAGGAACTTCATGACA 59.370 52.381 4.98 0.00 34.60 3.58
3491 3667 1.909302 TCCCTCCAGGAACTTCATGAC 59.091 52.381 4.98 0.00 43.78 3.06
3492 3668 2.342406 TCCCTCCAGGAACTTCATGA 57.658 50.000 4.98 0.00 43.78 3.07
3501 3677 1.628846 GCACTAACTTTCCCTCCAGGA 59.371 52.381 0.00 0.00 45.68 3.86
3502 3678 1.630878 AGCACTAACTTTCCCTCCAGG 59.369 52.381 0.00 0.00 0.00 4.45
3503 3679 3.077359 CAAGCACTAACTTTCCCTCCAG 58.923 50.000 0.00 0.00 0.00 3.86
3504 3680 2.441750 ACAAGCACTAACTTTCCCTCCA 59.558 45.455 0.00 0.00 0.00 3.86
3505 3681 3.075148 GACAAGCACTAACTTTCCCTCC 58.925 50.000 0.00 0.00 0.00 4.30
3506 3682 3.075148 GGACAAGCACTAACTTTCCCTC 58.925 50.000 0.00 0.00 0.00 4.30
3507 3683 2.441750 TGGACAAGCACTAACTTTCCCT 59.558 45.455 0.00 0.00 31.38 4.20
3508 3684 2.858745 TGGACAAGCACTAACTTTCCC 58.141 47.619 0.00 0.00 31.38 3.97
3509 3685 4.082733 GGATTGGACAAGCACTAACTTTCC 60.083 45.833 2.57 0.00 32.25 3.13
3510 3686 4.762251 AGGATTGGACAAGCACTAACTTTC 59.238 41.667 2.57 0.00 0.00 2.62
3511 3687 4.520492 CAGGATTGGACAAGCACTAACTTT 59.480 41.667 2.57 0.00 0.00 2.66
3512 3688 4.074970 CAGGATTGGACAAGCACTAACTT 58.925 43.478 2.57 0.00 0.00 2.66
3513 3689 3.679389 CAGGATTGGACAAGCACTAACT 58.321 45.455 2.57 0.00 0.00 2.24
3514 3690 2.162408 GCAGGATTGGACAAGCACTAAC 59.838 50.000 2.57 0.00 0.00 2.34
3515 3691 2.040278 AGCAGGATTGGACAAGCACTAA 59.960 45.455 2.57 0.00 0.00 2.24
3516 3692 1.630369 AGCAGGATTGGACAAGCACTA 59.370 47.619 2.57 0.00 0.00 2.74
3517 3693 0.403271 AGCAGGATTGGACAAGCACT 59.597 50.000 2.57 0.00 0.00 4.40
3518 3694 0.524862 CAGCAGGATTGGACAAGCAC 59.475 55.000 2.57 0.00 0.00 4.40
3519 3695 0.401356 TCAGCAGGATTGGACAAGCA 59.599 50.000 2.57 0.00 0.00 3.91
3520 3696 1.471684 CTTCAGCAGGATTGGACAAGC 59.528 52.381 0.00 0.00 0.00 4.01
3521 3697 2.787994 ACTTCAGCAGGATTGGACAAG 58.212 47.619 0.00 0.00 0.00 3.16
3522 3698 2.957402 ACTTCAGCAGGATTGGACAA 57.043 45.000 0.00 0.00 0.00 3.18
3523 3699 4.469586 TGTATACTTCAGCAGGATTGGACA 59.530 41.667 4.17 0.00 0.00 4.02
3524 3700 5.023533 TGTATACTTCAGCAGGATTGGAC 57.976 43.478 4.17 0.00 0.00 4.02
3525 3701 5.692115 TTGTATACTTCAGCAGGATTGGA 57.308 39.130 4.17 0.00 0.00 3.53
3526 3702 6.949352 ATTTGTATACTTCAGCAGGATTGG 57.051 37.500 4.17 0.00 0.00 3.16
3527 3703 7.765307 ACAATTTGTATACTTCAGCAGGATTG 58.235 34.615 0.00 0.00 0.00 2.67
3528 3704 7.831193 AGACAATTTGTATACTTCAGCAGGATT 59.169 33.333 1.15 0.00 0.00 3.01
3529 3705 7.341805 AGACAATTTGTATACTTCAGCAGGAT 58.658 34.615 1.15 0.00 0.00 3.24
3530 3706 6.711277 AGACAATTTGTATACTTCAGCAGGA 58.289 36.000 1.15 0.00 0.00 3.86
3531 3707 6.992063 AGACAATTTGTATACTTCAGCAGG 57.008 37.500 1.15 0.00 0.00 4.85
3532 3708 7.148573 ACGAAGACAATTTGTATACTTCAGCAG 60.149 37.037 20.51 11.78 35.11 4.24
3533 3709 6.649141 ACGAAGACAATTTGTATACTTCAGCA 59.351 34.615 20.51 0.00 35.11 4.41
3534 3710 6.955963 CACGAAGACAATTTGTATACTTCAGC 59.044 38.462 20.51 2.18 35.11 4.26
3535 3711 8.018677 ACACGAAGACAATTTGTATACTTCAG 57.981 34.615 20.51 16.30 35.11 3.02
3536 3712 7.654116 TGACACGAAGACAATTTGTATACTTCA 59.346 33.333 20.51 9.40 35.11 3.02
3537 3713 8.014322 TGACACGAAGACAATTTGTATACTTC 57.986 34.615 14.79 14.79 0.00 3.01
3538 3714 7.956420 TGACACGAAGACAATTTGTATACTT 57.044 32.000 1.15 1.99 0.00 2.24
3539 3715 8.547967 AATGACACGAAGACAATTTGTATACT 57.452 30.769 1.15 0.00 0.00 2.12
3544 3720 9.607285 GTATTTAATGACACGAAGACAATTTGT 57.393 29.630 0.63 0.63 0.00 2.83
3545 3721 9.061610 GGTATTTAATGACACGAAGACAATTTG 57.938 33.333 0.00 0.00 0.00 2.32
3546 3722 8.241367 GGGTATTTAATGACACGAAGACAATTT 58.759 33.333 0.00 0.00 0.00 1.82
3547 3723 7.610305 AGGGTATTTAATGACACGAAGACAATT 59.390 33.333 0.00 0.00 0.00 2.32
3548 3724 7.065803 CAGGGTATTTAATGACACGAAGACAAT 59.934 37.037 0.00 0.00 0.00 2.71
3549 3725 6.370442 CAGGGTATTTAATGACACGAAGACAA 59.630 38.462 0.00 0.00 0.00 3.18
3550 3726 5.872617 CAGGGTATTTAATGACACGAAGACA 59.127 40.000 0.00 0.00 0.00 3.41
3551 3727 5.293569 CCAGGGTATTTAATGACACGAAGAC 59.706 44.000 0.00 0.00 0.00 3.01
3552 3728 5.424757 CCAGGGTATTTAATGACACGAAGA 58.575 41.667 0.00 0.00 0.00 2.87
3553 3729 4.574828 CCCAGGGTATTTAATGACACGAAG 59.425 45.833 0.00 0.00 0.00 3.79
3554 3730 4.519213 CCCAGGGTATTTAATGACACGAA 58.481 43.478 0.00 0.00 0.00 3.85
3555 3731 3.683281 GCCCAGGGTATTTAATGACACGA 60.683 47.826 7.55 0.00 0.00 4.35
3556 3732 2.616842 GCCCAGGGTATTTAATGACACG 59.383 50.000 7.55 0.00 0.00 4.49
3557 3733 2.956333 GGCCCAGGGTATTTAATGACAC 59.044 50.000 7.55 0.00 0.00 3.67
3558 3734 2.583101 TGGCCCAGGGTATTTAATGACA 59.417 45.455 7.55 0.00 0.00 3.58
3559 3735 3.306472 TGGCCCAGGGTATTTAATGAC 57.694 47.619 7.55 0.00 0.00 3.06
3560 3736 4.551215 AATGGCCCAGGGTATTTAATGA 57.449 40.909 7.55 0.00 0.00 2.57
3561 3737 5.393866 AGTAATGGCCCAGGGTATTTAATG 58.606 41.667 7.55 0.00 0.00 1.90
3562 3738 5.375655 AGAGTAATGGCCCAGGGTATTTAAT 59.624 40.000 7.55 1.86 0.00 1.40
3563 3739 4.729881 AGAGTAATGGCCCAGGGTATTTAA 59.270 41.667 7.55 0.00 0.00 1.52
3564 3740 4.312487 AGAGTAATGGCCCAGGGTATTTA 58.688 43.478 7.55 0.00 0.00 1.40
3565 3741 3.131252 AGAGTAATGGCCCAGGGTATTT 58.869 45.455 7.55 0.70 0.00 1.40
3566 3742 2.789219 AGAGTAATGGCCCAGGGTATT 58.211 47.619 7.55 10.98 0.00 1.89
3567 3743 2.514726 AGAGTAATGGCCCAGGGTAT 57.485 50.000 7.55 0.00 0.00 2.73
3568 3744 2.280308 AAGAGTAATGGCCCAGGGTA 57.720 50.000 7.55 0.00 0.00 3.69
3569 3745 2.280308 TAAGAGTAATGGCCCAGGGT 57.720 50.000 7.55 0.00 0.00 4.34
3570 3746 6.636454 TTATATAAGAGTAATGGCCCAGGG 57.364 41.667 0.00 0.00 0.00 4.45
3571 3747 7.690256 AGTTTATATAAGAGTAATGGCCCAGG 58.310 38.462 0.00 0.00 0.00 4.45
3572 3748 7.824779 GGAGTTTATATAAGAGTAATGGCCCAG 59.175 40.741 0.00 0.00 0.00 4.45
3573 3749 7.256908 GGGAGTTTATATAAGAGTAATGGCCCA 60.257 40.741 0.00 0.00 0.00 5.36
3574 3750 7.110810 GGGAGTTTATATAAGAGTAATGGCCC 58.889 42.308 0.00 0.00 0.00 5.80
3575 3751 7.686434 TGGGAGTTTATATAAGAGTAATGGCC 58.314 38.462 0.00 0.00 0.00 5.36
3576 3752 8.594550 TCTGGGAGTTTATATAAGAGTAATGGC 58.405 37.037 0.00 0.00 0.00 4.40
3581 3757 9.877222 TGACATCTGGGAGTTTATATAAGAGTA 57.123 33.333 0.00 0.00 0.00 2.59
3582 3758 8.643324 GTGACATCTGGGAGTTTATATAAGAGT 58.357 37.037 0.00 0.00 0.00 3.24
3583 3759 8.642432 TGTGACATCTGGGAGTTTATATAAGAG 58.358 37.037 0.00 0.00 0.00 2.85
3584 3760 8.547481 TGTGACATCTGGGAGTTTATATAAGA 57.453 34.615 0.00 0.00 0.00 2.10
3585 3761 9.784531 AATGTGACATCTGGGAGTTTATATAAG 57.215 33.333 0.00 0.00 0.00 1.73
3586 3762 9.778741 GAATGTGACATCTGGGAGTTTATATAA 57.221 33.333 0.00 0.00 0.00 0.98
3587 3763 8.088365 CGAATGTGACATCTGGGAGTTTATATA 58.912 37.037 0.00 0.00 0.00 0.86
3588 3764 6.931281 CGAATGTGACATCTGGGAGTTTATAT 59.069 38.462 0.00 0.00 0.00 0.86
3589 3765 6.280643 CGAATGTGACATCTGGGAGTTTATA 58.719 40.000 0.00 0.00 0.00 0.98
3590 3766 5.118990 CGAATGTGACATCTGGGAGTTTAT 58.881 41.667 0.00 0.00 0.00 1.40
3594 3770 1.406069 GCGAATGTGACATCTGGGAGT 60.406 52.381 0.00 0.00 0.00 3.85
3609 3785 1.098050 GTCCCAGAAGCAATGCGAAT 58.902 50.000 0.00 0.00 0.00 3.34
3613 3789 1.251251 AACAGTCCCAGAAGCAATGC 58.749 50.000 0.00 0.00 0.00 3.56
3615 3791 4.574674 TCATAACAGTCCCAGAAGCAAT 57.425 40.909 0.00 0.00 0.00 3.56
3622 3798 3.981071 TGACCTTCATAACAGTCCCAG 57.019 47.619 0.00 0.00 0.00 4.45
3629 3805 3.937814 AGCAACGATGACCTTCATAACA 58.062 40.909 0.00 0.00 37.20 2.41
3630 3806 4.631813 AGAAGCAACGATGACCTTCATAAC 59.368 41.667 12.97 0.00 37.20 1.89
3647 3823 0.533491 GGGCAATTGCATCAGAAGCA 59.467 50.000 30.32 0.00 44.36 3.91
3649 3825 1.822990 ACTGGGCAATTGCATCAGAAG 59.177 47.619 37.18 24.63 42.37 2.85
3650 3826 1.927487 ACTGGGCAATTGCATCAGAA 58.073 45.000 37.18 17.58 42.37 3.02
3651 3827 1.927487 AACTGGGCAATTGCATCAGA 58.073 45.000 37.18 17.78 42.37 3.27
3657 3861 3.215642 GTCCAAACTGGGCAATTGC 57.784 52.632 22.47 22.47 42.98 3.56
3663 3867 0.681175 AGCAATTGTCCAAACTGGGC 59.319 50.000 7.40 0.00 43.98 5.36
3665 3869 3.125316 CACAAGCAATTGTCCAAACTGG 58.875 45.455 7.40 0.00 39.43 4.00
3671 3875 4.397420 AGTGATACACAAGCAATTGTCCA 58.603 39.130 7.40 0.00 36.74 4.02
3684 3888 9.534565 TCTTGATCAGCTAAATTAGTGATACAC 57.465 33.333 13.84 0.00 31.44 2.90
3696 3900 7.279536 CAGCAAAGTATCTCTTGATCAGCTAAA 59.720 37.037 0.00 0.00 36.40 1.85
3702 3906 5.181009 CACCAGCAAAGTATCTCTTGATCA 58.819 41.667 0.00 0.00 36.40 2.92
3706 3923 3.012518 CCCACCAGCAAAGTATCTCTTG 58.987 50.000 0.00 0.00 36.40 3.02
3723 3940 4.720273 TCTTTCTCCTAACCTTATCCCCAC 59.280 45.833 0.00 0.00 0.00 4.61
3726 3943 7.381789 AAGATCTTTCTCCTAACCTTATCCC 57.618 40.000 0.88 0.00 0.00 3.85
3732 3949 9.593565 AAAAATCAAAGATCTTTCTCCTAACCT 57.406 29.630 17.91 0.00 0.00 3.50
3761 3978 2.644798 GTCTGGGTCATGGGGCTTATAT 59.355 50.000 0.00 0.00 0.00 0.86
3764 3981 0.253160 AGTCTGGGTCATGGGGCTTA 60.253 55.000 0.00 0.00 0.00 3.09
3768 3985 0.405585 AACAAGTCTGGGTCATGGGG 59.594 55.000 0.00 0.00 0.00 4.96
3775 3992 3.560025 CCAGCAGATAAACAAGTCTGGGT 60.560 47.826 4.74 0.00 41.62 4.51
3776 3993 3.012518 CCAGCAGATAAACAAGTCTGGG 58.987 50.000 4.74 0.00 41.62 4.45
3777 3994 2.421424 GCCAGCAGATAAACAAGTCTGG 59.579 50.000 4.74 0.00 41.62 3.86
3778 3995 2.094894 CGCCAGCAGATAAACAAGTCTG 59.905 50.000 0.00 0.00 43.62 3.51
3779 3996 2.289694 ACGCCAGCAGATAAACAAGTCT 60.290 45.455 0.00 0.00 0.00 3.24
3780 3997 2.076863 ACGCCAGCAGATAAACAAGTC 58.923 47.619 0.00 0.00 0.00 3.01
3781 3998 2.185004 ACGCCAGCAGATAAACAAGT 57.815 45.000 0.00 0.00 0.00 3.16
3782 3999 3.492313 GAAACGCCAGCAGATAAACAAG 58.508 45.455 0.00 0.00 0.00 3.16
3783 4000 2.095969 CGAAACGCCAGCAGATAAACAA 60.096 45.455 0.00 0.00 0.00 2.83
3784 4001 1.463056 CGAAACGCCAGCAGATAAACA 59.537 47.619 0.00 0.00 0.00 2.83
3785 4002 2.159467 CGAAACGCCAGCAGATAAAC 57.841 50.000 0.00 0.00 0.00 2.01
3798 4015 2.124122 CTTTCCAAAAAGGGCGAAACG 58.876 47.619 0.00 0.00 38.59 3.60
3808 4025 6.248433 AGCTCATGATACTCCTTTCCAAAAA 58.752 36.000 0.00 0.00 0.00 1.94
3809 4026 5.819991 AGCTCATGATACTCCTTTCCAAAA 58.180 37.500 0.00 0.00 0.00 2.44
3814 4033 7.383843 GCTTTAGTAGCTCATGATACTCCTTTC 59.616 40.741 11.42 0.00 43.41 2.62
3852 4071 3.389002 TCCTCCTAATTTAGCCGGGTAAC 59.611 47.826 25.13 0.00 0.00 2.50
3853 4072 3.389002 GTCCTCCTAATTTAGCCGGGTAA 59.611 47.826 21.84 21.84 0.00 2.85
3854 4073 2.967887 GTCCTCCTAATTTAGCCGGGTA 59.032 50.000 9.87 9.87 0.00 3.69
3856 4075 2.047830 AGTCCTCCTAATTTAGCCGGG 58.952 52.381 2.18 0.00 0.00 5.73
3857 4076 3.896272 ACTAGTCCTCCTAATTTAGCCGG 59.104 47.826 0.00 0.00 0.00 6.13
3858 4077 4.320348 CGACTAGTCCTCCTAATTTAGCCG 60.320 50.000 17.23 0.00 0.00 5.52
3861 4080 6.461231 CCAACCGACTAGTCCTCCTAATTTAG 60.461 46.154 17.23 0.00 0.00 1.85
3862 4081 5.361857 CCAACCGACTAGTCCTCCTAATTTA 59.638 44.000 17.23 0.00 0.00 1.40
3864 4083 3.705072 CCAACCGACTAGTCCTCCTAATT 59.295 47.826 17.23 0.00 0.00 1.40
3875 4103 1.120530 ATGTAGGGCCAACCGACTAG 58.879 55.000 6.18 0.00 44.39 2.57
3880 4108 6.235231 AGAATATATATGTAGGGCCAACCG 57.765 41.667 6.18 0.00 46.96 4.44
3882 4110 6.884295 TGCAAGAATATATATGTAGGGCCAAC 59.116 38.462 6.18 2.12 0.00 3.77
3883 4111 7.026697 TGCAAGAATATATATGTAGGGCCAA 57.973 36.000 6.18 0.00 0.00 4.52
3884 4112 6.634889 TGCAAGAATATATATGTAGGGCCA 57.365 37.500 6.18 0.00 0.00 5.36
3885 4113 7.938140 TTTGCAAGAATATATATGTAGGGCC 57.062 36.000 0.00 0.00 0.00 5.80
3886 4114 9.177608 TCATTTGCAAGAATATATATGTAGGGC 57.822 33.333 0.00 0.00 0.00 5.19
3907 4144 8.412456 TGAACATGAGTAACAATGTGTTCATTT 58.588 29.630 12.96 6.03 44.15 2.32
3916 4153 7.149569 AGGAACATGAACATGAGTAACAATG 57.850 36.000 19.56 0.00 41.20 2.82
3917 4154 8.103305 AGTAGGAACATGAACATGAGTAACAAT 58.897 33.333 19.56 0.00 41.20 2.71
3918 4155 7.387673 CAGTAGGAACATGAACATGAGTAACAA 59.612 37.037 19.56 0.00 41.20 2.83
3919 4156 6.873605 CAGTAGGAACATGAACATGAGTAACA 59.126 38.462 19.56 0.00 41.20 2.41
3920 4157 6.874134 ACAGTAGGAACATGAACATGAGTAAC 59.126 38.462 19.56 11.02 41.20 2.50
3921 4158 7.004555 ACAGTAGGAACATGAACATGAGTAA 57.995 36.000 19.56 1.05 41.20 2.24
3922 4159 6.605471 ACAGTAGGAACATGAACATGAGTA 57.395 37.500 19.56 4.59 41.20 2.59
3923 4160 5.489792 ACAGTAGGAACATGAACATGAGT 57.510 39.130 19.56 8.25 41.20 3.41
3924 4161 6.348786 CCAAACAGTAGGAACATGAACATGAG 60.349 42.308 19.56 0.00 41.20 2.90
3925 4162 5.473162 CCAAACAGTAGGAACATGAACATGA 59.527 40.000 19.56 0.00 41.20 3.07
3926 4163 5.473162 TCCAAACAGTAGGAACATGAACATG 59.527 40.000 12.43 12.43 44.15 3.21
3927 4164 5.630121 TCCAAACAGTAGGAACATGAACAT 58.370 37.500 0.00 0.00 0.00 2.71
3928 4165 5.042463 TCCAAACAGTAGGAACATGAACA 57.958 39.130 0.00 0.00 0.00 3.18
3929 4166 6.385649 TTTCCAAACAGTAGGAACATGAAC 57.614 37.500 0.00 0.00 43.23 3.18
3930 4167 6.775142 TCATTTCCAAACAGTAGGAACATGAA 59.225 34.615 18.11 5.18 43.23 2.57
3931 4168 6.303054 TCATTTCCAAACAGTAGGAACATGA 58.697 36.000 17.36 17.36 43.23 3.07
3932 4169 6.573664 TCATTTCCAAACAGTAGGAACATG 57.426 37.500 6.85 12.05 43.23 3.21
3933 4170 6.777580 AGTTCATTTCCAAACAGTAGGAACAT 59.222 34.615 6.85 3.14 43.23 2.71
3934 4171 6.039270 CAGTTCATTTCCAAACAGTAGGAACA 59.961 38.462 6.85 1.32 43.23 3.18
3935 4172 6.039382 ACAGTTCATTTCCAAACAGTAGGAAC 59.961 38.462 6.85 0.00 43.23 3.62
3936 4173 6.126409 ACAGTTCATTTCCAAACAGTAGGAA 58.874 36.000 3.76 3.76 41.92 3.36
3937 4174 5.690865 ACAGTTCATTTCCAAACAGTAGGA 58.309 37.500 0.00 0.00 0.00 2.94
3938 4175 6.391227 AACAGTTCATTTCCAAACAGTAGG 57.609 37.500 0.00 0.00 0.00 3.18
3939 4176 6.263168 AGGAACAGTTCATTTCCAAACAGTAG 59.737 38.462 15.36 0.00 43.41 2.57
3940 4177 6.126409 AGGAACAGTTCATTTCCAAACAGTA 58.874 36.000 15.36 0.00 43.41 2.74
3941 4178 4.956075 AGGAACAGTTCATTTCCAAACAGT 59.044 37.500 15.36 0.00 43.41 3.55
3954 4191 5.407407 TGATCAAGTAGGAGGAACAGTTC 57.593 43.478 4.52 4.52 0.00 3.01
3961 4198 6.566079 ATCAAACATGATCAAGTAGGAGGA 57.434 37.500 3.64 0.00 0.00 3.71
3963 4200 8.272545 TGAAATCAAACATGATCAAGTAGGAG 57.727 34.615 3.64 0.00 0.00 3.69
4004 4266 9.474249 GAACATGCGAACTAGAACTAAAAATAC 57.526 33.333 0.00 0.00 0.00 1.89
4016 4278 8.390354 TCTATGAAATTTGAACATGCGAACTAG 58.610 33.333 0.00 0.00 0.00 2.57
4021 4283 6.741992 ACTCTATGAAATTTGAACATGCGA 57.258 33.333 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.