Multiple sequence alignment - TraesCS1A01G381400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G381400 chr1A 100.000 2261 0 0 1 2261 552120308 552118048 0.000000e+00 4176.0
1 TraesCS1A01G381400 chr1B 86.909 1016 85 28 465 1454 633261164 633260171 0.000000e+00 1096.0
2 TraesCS1A01G381400 chr1D 87.093 860 71 19 606 1454 460995947 460995117 0.000000e+00 937.0
3 TraesCS1A01G381400 chr1D 86.512 860 52 31 621 1454 460982872 460982051 0.000000e+00 887.0
4 TraesCS1A01G381400 chr1D 76.905 433 74 17 1852 2261 460981249 460980820 2.920000e-54 222.0
5 TraesCS1A01G381400 chr1D 87.069 116 10 3 1565 1675 460981910 460981795 2.360000e-25 126.0
6 TraesCS1A01G381400 chr3A 83.743 855 68 29 644 1447 47048629 47047795 0.000000e+00 743.0
7 TraesCS1A01G381400 chr3D 83.238 877 73 32 608 1447 36825031 36824192 0.000000e+00 737.0
8 TraesCS1A01G381400 chr3D 96.000 225 7 2 1 224 301329617 301329394 4.590000e-97 364.0
9 TraesCS1A01G381400 chr3D 75.660 341 76 4 1743 2077 5359064 5358725 1.800000e-36 163.0
10 TraesCS1A01G381400 chr3B 82.986 864 73 37 608 1431 59328372 59327543 0.000000e+00 713.0
11 TraesCS1A01G381400 chr3B 78.890 829 59 49 684 1447 80656946 80657723 2.650000e-124 455.0
12 TraesCS1A01G381400 chr3B 84.165 461 37 19 609 1044 80199482 80199931 4.490000e-112 414.0
13 TraesCS1A01G381400 chr3B 83.288 371 37 10 1101 1454 80199936 80200298 3.620000e-83 318.0
14 TraesCS1A01G381400 chr4A 81.541 688 90 22 744 1412 642186852 642186183 1.190000e-147 532.0
15 TraesCS1A01G381400 chr4A 76.983 517 83 16 684 1188 642654210 642653718 1.720000e-66 263.0
16 TraesCS1A01G381400 chr4A 91.803 61 1 2 682 738 642109580 642109520 5.180000e-12 82.4
17 TraesCS1A01G381400 chr4A 100.000 30 0 0 654 683 686572852 686572881 3.140000e-04 56.5
18 TraesCS1A01G381400 chr7A 79.921 762 91 36 688 1412 37937724 37938460 9.320000e-139 503.0
19 TraesCS1A01G381400 chr7A 94.521 219 9 2 1 217 299250336 299250119 3.600000e-88 335.0
20 TraesCS1A01G381400 chr7A 85.547 256 32 3 933 1188 38361950 38362200 1.720000e-66 263.0
21 TraesCS1A01G381400 chr7A 80.000 335 55 10 1029 1357 37354604 37354276 1.040000e-58 237.0
22 TraesCS1A01G381400 chr7A 78.261 115 16 8 1737 1845 41451215 41451326 5.210000e-07 65.8
23 TraesCS1A01G381400 chr7D 79.378 611 73 30 830 1412 38203964 38204549 4.560000e-102 381.0
24 TraesCS1A01G381400 chr7D 96.429 224 7 1 1 224 37883075 37883297 3.550000e-98 368.0
25 TraesCS1A01G381400 chr7D 95.516 223 10 0 2 224 116802558 116802336 7.680000e-95 357.0
26 TraesCS1A01G381400 chr7D 96.296 216 6 1 1 216 488077191 488076978 9.930000e-94 353.0
27 TraesCS1A01G381400 chr7D 95.853 217 9 0 1 217 162146723 162146939 3.570000e-93 351.0
28 TraesCS1A01G381400 chr4D 96.429 224 8 0 1 224 252181990 252182213 9.860000e-99 370.0
29 TraesCS1A01G381400 chr4D 96.774 217 7 0 1 217 386174317 386174533 1.650000e-96 363.0
30 TraesCS1A01G381400 chr2B 94.643 224 12 0 1 224 534939727 534939950 4.620000e-92 348.0
31 TraesCS1A01G381400 chr5D 77.670 309 67 2 1741 2048 500451728 500452035 1.070000e-43 187.0
32 TraesCS1A01G381400 chr5D 79.512 205 31 9 250 445 513697262 513697464 3.920000e-28 135.0
33 TraesCS1A01G381400 chr5A 74.434 309 65 14 1747 2048 670446364 670446665 1.100000e-23 121.0
34 TraesCS1A01G381400 chr2D 76.970 165 36 2 1802 1966 567002142 567002304 2.390000e-15 93.5
35 TraesCS1A01G381400 chr6D 75.377 199 40 7 1811 2007 388207701 388207510 1.110000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G381400 chr1A 552118048 552120308 2260 True 4176.000000 4176 100.000000 1 2261 1 chr1A.!!$R1 2260
1 TraesCS1A01G381400 chr1B 633260171 633261164 993 True 1096.000000 1096 86.909000 465 1454 1 chr1B.!!$R1 989
2 TraesCS1A01G381400 chr1D 460995117 460995947 830 True 937.000000 937 87.093000 606 1454 1 chr1D.!!$R1 848
3 TraesCS1A01G381400 chr1D 460980820 460982872 2052 True 411.666667 887 83.495333 621 2261 3 chr1D.!!$R2 1640
4 TraesCS1A01G381400 chr3A 47047795 47048629 834 True 743.000000 743 83.743000 644 1447 1 chr3A.!!$R1 803
5 TraesCS1A01G381400 chr3D 36824192 36825031 839 True 737.000000 737 83.238000 608 1447 1 chr3D.!!$R2 839
6 TraesCS1A01G381400 chr3B 59327543 59328372 829 True 713.000000 713 82.986000 608 1431 1 chr3B.!!$R1 823
7 TraesCS1A01G381400 chr3B 80656946 80657723 777 False 455.000000 455 78.890000 684 1447 1 chr3B.!!$F1 763
8 TraesCS1A01G381400 chr3B 80199482 80200298 816 False 366.000000 414 83.726500 609 1454 2 chr3B.!!$F2 845
9 TraesCS1A01G381400 chr4A 642186183 642186852 669 True 532.000000 532 81.541000 744 1412 1 chr4A.!!$R2 668
10 TraesCS1A01G381400 chr7A 37937724 37938460 736 False 503.000000 503 79.921000 688 1412 1 chr7A.!!$F1 724
11 TraesCS1A01G381400 chr7D 38203964 38204549 585 False 381.000000 381 79.378000 830 1412 1 chr7D.!!$F2 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 396 0.032952 AAAACTGCCACGTCGCTCTA 59.967 50.0 6.72 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 2863 0.041312 CAGAAAAACCTGCCGACACG 60.041 55.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.459852 AGCCATGCTTATTGGATAAGGT 57.540 40.909 9.13 0.00 41.92 3.50
22 23 4.808042 AGCCATGCTTATTGGATAAGGTT 58.192 39.130 9.13 0.00 41.92 3.50
23 24 5.952387 AGCCATGCTTATTGGATAAGGTTA 58.048 37.500 9.13 0.00 41.92 2.85
24 25 6.006449 AGCCATGCTTATTGGATAAGGTTAG 58.994 40.000 9.13 0.00 41.92 2.34
25 26 5.183904 GCCATGCTTATTGGATAAGGTTAGG 59.816 44.000 9.13 0.00 41.92 2.69
26 27 6.542821 CCATGCTTATTGGATAAGGTTAGGA 58.457 40.000 9.13 0.00 41.92 2.94
27 28 6.431234 CCATGCTTATTGGATAAGGTTAGGAC 59.569 42.308 9.13 0.00 41.92 3.85
28 29 5.937111 TGCTTATTGGATAAGGTTAGGACC 58.063 41.667 9.13 0.00 46.92 4.46
39 40 3.595190 GGTTAGGACCATGGGCTATTT 57.405 47.619 19.55 3.54 45.77 1.40
40 41 3.910989 GGTTAGGACCATGGGCTATTTT 58.089 45.455 19.55 0.86 45.77 1.82
41 42 4.286707 GGTTAGGACCATGGGCTATTTTT 58.713 43.478 19.55 0.00 45.77 1.94
58 59 3.802948 TTTTTAAAACTCCCGCTGCAA 57.197 38.095 0.00 0.00 0.00 4.08
59 60 2.785713 TTTAAAACTCCCGCTGCAAC 57.214 45.000 0.00 0.00 0.00 4.17
60 61 0.589223 TTAAAACTCCCGCTGCAACG 59.411 50.000 1.65 1.65 0.00 4.10
61 62 1.847890 TAAAACTCCCGCTGCAACGC 61.848 55.000 3.43 0.00 0.00 4.84
62 63 4.927782 AACTCCCGCTGCAACGCA 62.928 61.111 3.43 0.00 36.92 5.24
73 74 2.725450 CAACGCACGCGCATGTTT 60.725 55.556 12.02 0.00 44.19 2.83
74 75 2.725450 AACGCACGCGCATGTTTG 60.725 55.556 12.02 0.00 44.19 2.93
81 82 1.063006 CGCGCATGTTTGCTATGCT 59.937 52.632 8.75 0.00 46.62 3.79
82 83 0.304401 CGCGCATGTTTGCTATGCTA 59.696 50.000 8.75 0.00 46.62 3.49
83 84 1.069703 CGCGCATGTTTGCTATGCTAT 60.070 47.619 8.75 0.00 46.62 2.97
84 85 2.157474 CGCGCATGTTTGCTATGCTATA 59.843 45.455 8.75 0.00 46.62 1.31
85 86 3.363871 CGCGCATGTTTGCTATGCTATAA 60.364 43.478 8.75 0.00 46.62 0.98
86 87 4.536065 GCGCATGTTTGCTATGCTATAAA 58.464 39.130 0.30 0.00 46.62 1.40
87 88 4.975502 GCGCATGTTTGCTATGCTATAAAA 59.024 37.500 0.30 0.00 46.62 1.52
88 89 5.458452 GCGCATGTTTGCTATGCTATAAAAA 59.542 36.000 0.30 0.00 46.62 1.94
115 116 9.477484 ACACTAATCTGCTTAACCTTATTATCG 57.523 33.333 0.00 0.00 0.00 2.92
116 117 9.692749 CACTAATCTGCTTAACCTTATTATCGA 57.307 33.333 0.00 0.00 0.00 3.59
120 121 9.561069 AATCTGCTTAACCTTATTATCGATGTT 57.439 29.630 8.54 4.99 0.00 2.71
121 122 8.958119 TCTGCTTAACCTTATTATCGATGTTT 57.042 30.769 8.54 0.00 0.00 2.83
156 157 9.987726 TGGATATATAAAATGGTGCATAATGGA 57.012 29.630 0.00 0.00 0.00 3.41
163 164 9.902684 ATAAAATGGTGCATAATGGAAAATGAA 57.097 25.926 0.00 0.00 0.00 2.57
164 165 7.852971 AAATGGTGCATAATGGAAAATGAAG 57.147 32.000 0.00 0.00 0.00 3.02
165 166 4.757594 TGGTGCATAATGGAAAATGAAGC 58.242 39.130 0.00 0.00 31.07 3.86
166 167 4.122046 GGTGCATAATGGAAAATGAAGCC 58.878 43.478 0.00 0.00 0.00 4.35
167 168 3.798337 GTGCATAATGGAAAATGAAGCCG 59.202 43.478 0.00 0.00 0.00 5.52
168 169 3.181477 TGCATAATGGAAAATGAAGCCGG 60.181 43.478 0.00 0.00 0.00 6.13
169 170 3.181476 GCATAATGGAAAATGAAGCCGGT 60.181 43.478 1.90 0.00 0.00 5.28
170 171 4.680440 GCATAATGGAAAATGAAGCCGGTT 60.680 41.667 1.90 0.00 0.00 4.44
171 172 3.317603 AATGGAAAATGAAGCCGGTTG 57.682 42.857 1.90 0.00 0.00 3.77
172 173 1.698506 TGGAAAATGAAGCCGGTTGT 58.301 45.000 1.90 0.00 0.00 3.32
173 174 1.339610 TGGAAAATGAAGCCGGTTGTG 59.660 47.619 1.90 0.00 0.00 3.33
174 175 1.339929 GGAAAATGAAGCCGGTTGTGT 59.660 47.619 1.90 0.00 0.00 3.72
175 176 2.607038 GGAAAATGAAGCCGGTTGTGTC 60.607 50.000 1.90 0.00 0.00 3.67
176 177 0.958822 AAATGAAGCCGGTTGTGTCC 59.041 50.000 1.90 0.00 0.00 4.02
177 178 0.893727 AATGAAGCCGGTTGTGTCCC 60.894 55.000 1.90 0.00 0.00 4.46
178 179 1.779061 ATGAAGCCGGTTGTGTCCCT 61.779 55.000 1.90 0.00 0.00 4.20
179 180 1.228154 GAAGCCGGTTGTGTCCCTT 60.228 57.895 1.90 0.00 0.00 3.95
180 181 0.822121 GAAGCCGGTTGTGTCCCTTT 60.822 55.000 1.90 0.00 0.00 3.11
181 182 0.396556 AAGCCGGTTGTGTCCCTTTT 60.397 50.000 1.90 0.00 0.00 2.27
182 183 0.396556 AGCCGGTTGTGTCCCTTTTT 60.397 50.000 1.90 0.00 0.00 1.94
207 208 3.600694 TGCAACGCACGGGCATTT 61.601 55.556 11.77 0.00 41.24 2.32
208 209 3.105157 GCAACGCACGGGCATTTG 61.105 61.111 11.77 13.80 41.24 2.32
209 210 2.334653 CAACGCACGGGCATTTGT 59.665 55.556 11.77 0.00 41.24 2.83
210 211 2.015627 CAACGCACGGGCATTTGTG 61.016 57.895 11.77 0.00 41.24 3.33
215 216 2.555123 CACGGGCATTTGTGCTAGT 58.445 52.632 0.07 0.00 34.73 2.57
216 217 1.732941 CACGGGCATTTGTGCTAGTA 58.267 50.000 0.07 0.00 34.73 1.82
217 218 1.665679 CACGGGCATTTGTGCTAGTAG 59.334 52.381 0.07 0.00 34.73 2.57
218 219 1.278127 ACGGGCATTTGTGCTAGTAGT 59.722 47.619 0.00 0.00 34.73 2.73
219 220 2.498481 ACGGGCATTTGTGCTAGTAGTA 59.502 45.455 0.00 0.00 34.73 1.82
220 221 3.055675 ACGGGCATTTGTGCTAGTAGTAA 60.056 43.478 0.00 0.00 34.73 2.24
221 222 4.127171 CGGGCATTTGTGCTAGTAGTAAT 58.873 43.478 0.00 0.00 34.73 1.89
222 223 5.163385 ACGGGCATTTGTGCTAGTAGTAATA 60.163 40.000 0.00 0.00 34.73 0.98
223 224 5.756347 CGGGCATTTGTGCTAGTAGTAATAA 59.244 40.000 0.00 0.00 34.73 1.40
224 225 6.426937 CGGGCATTTGTGCTAGTAGTAATAAT 59.573 38.462 0.00 0.00 34.73 1.28
225 226 7.601130 CGGGCATTTGTGCTAGTAGTAATAATA 59.399 37.037 0.00 0.00 34.73 0.98
226 227 9.449719 GGGCATTTGTGCTAGTAGTAATAATAT 57.550 33.333 0.00 0.00 34.73 1.28
274 275 8.818141 TTAACAGAAATCCTATCTAGCAATCG 57.182 34.615 0.00 0.00 0.00 3.34
275 276 6.412362 ACAGAAATCCTATCTAGCAATCGT 57.588 37.500 0.00 0.00 0.00 3.73
276 277 6.821388 ACAGAAATCCTATCTAGCAATCGTT 58.179 36.000 0.00 0.00 0.00 3.85
277 278 6.926272 ACAGAAATCCTATCTAGCAATCGTTC 59.074 38.462 0.00 0.00 0.00 3.95
278 279 6.088749 CAGAAATCCTATCTAGCAATCGTTCG 59.911 42.308 0.00 0.00 0.00 3.95
279 280 3.284323 TCCTATCTAGCAATCGTTCGC 57.716 47.619 0.00 0.00 0.00 4.70
280 281 2.885266 TCCTATCTAGCAATCGTTCGCT 59.115 45.455 0.00 0.00 42.34 4.93
281 282 2.983136 CCTATCTAGCAATCGTTCGCTG 59.017 50.000 5.66 0.00 39.30 5.18
282 283 1.858091 ATCTAGCAATCGTTCGCTGG 58.142 50.000 5.66 3.30 39.30 4.85
283 284 0.179111 TCTAGCAATCGTTCGCTGGG 60.179 55.000 5.66 0.00 39.30 4.45
284 285 0.179111 CTAGCAATCGTTCGCTGGGA 60.179 55.000 5.66 0.00 39.30 4.37
285 286 0.179111 TAGCAATCGTTCGCTGGGAG 60.179 55.000 5.66 0.00 39.30 4.30
286 287 1.447838 GCAATCGTTCGCTGGGAGA 60.448 57.895 0.00 0.00 0.00 3.71
287 288 1.424493 GCAATCGTTCGCTGGGAGAG 61.424 60.000 0.00 0.00 0.00 3.20
288 289 0.807667 CAATCGTTCGCTGGGAGAGG 60.808 60.000 0.00 0.00 0.00 3.69
289 290 1.961180 AATCGTTCGCTGGGAGAGGG 61.961 60.000 0.00 0.00 35.92 4.30
290 291 4.148825 CGTTCGCTGGGAGAGGGG 62.149 72.222 0.00 0.00 35.30 4.79
291 292 3.003763 GTTCGCTGGGAGAGGGGT 61.004 66.667 0.00 0.00 35.30 4.95
292 293 3.003173 TTCGCTGGGAGAGGGGTG 61.003 66.667 0.00 0.00 35.30 4.61
293 294 3.539593 TTCGCTGGGAGAGGGGTGA 62.540 63.158 0.00 0.00 35.30 4.02
294 295 3.775654 CGCTGGGAGAGGGGTGAC 61.776 72.222 0.00 0.00 0.00 3.67
295 296 2.607750 GCTGGGAGAGGGGTGACA 60.608 66.667 0.00 0.00 0.00 3.58
296 297 2.224159 GCTGGGAGAGGGGTGACAA 61.224 63.158 0.00 0.00 0.00 3.18
297 298 1.779061 GCTGGGAGAGGGGTGACAAA 61.779 60.000 0.00 0.00 0.00 2.83
298 299 0.036875 CTGGGAGAGGGGTGACAAAC 59.963 60.000 0.00 0.00 0.00 2.93
299 300 1.003718 GGGAGAGGGGTGACAAACG 60.004 63.158 0.00 0.00 0.00 3.60
300 301 1.477685 GGGAGAGGGGTGACAAACGA 61.478 60.000 0.00 0.00 0.00 3.85
301 302 0.395312 GGAGAGGGGTGACAAACGAA 59.605 55.000 0.00 0.00 0.00 3.85
302 303 1.509703 GAGAGGGGTGACAAACGAAC 58.490 55.000 0.00 0.00 0.00 3.95
303 304 1.070289 GAGAGGGGTGACAAACGAACT 59.930 52.381 0.00 0.00 0.00 3.01
304 305 1.489230 AGAGGGGTGACAAACGAACTT 59.511 47.619 0.00 0.00 0.00 2.66
305 306 2.092592 AGAGGGGTGACAAACGAACTTT 60.093 45.455 0.00 0.00 0.00 2.66
306 307 2.686405 GAGGGGTGACAAACGAACTTTT 59.314 45.455 0.00 0.00 0.00 2.27
307 308 3.093814 AGGGGTGACAAACGAACTTTTT 58.906 40.909 0.00 0.00 0.00 1.94
330 331 8.458573 TTTTTATGGCAGTTTTAGTTCTGAGA 57.541 30.769 0.00 0.00 34.02 3.27
331 332 8.458573 TTTTATGGCAGTTTTAGTTCTGAGAA 57.541 30.769 0.00 0.00 34.02 2.87
332 333 7.672983 TTATGGCAGTTTTAGTTCTGAGAAG 57.327 36.000 0.00 0.00 34.02 2.85
333 334 5.290493 TGGCAGTTTTAGTTCTGAGAAGA 57.710 39.130 0.00 0.00 34.02 2.87
334 335 5.300752 TGGCAGTTTTAGTTCTGAGAAGAG 58.699 41.667 0.00 0.00 34.02 2.85
335 336 5.070446 TGGCAGTTTTAGTTCTGAGAAGAGA 59.930 40.000 0.00 0.00 34.02 3.10
336 337 6.169800 GGCAGTTTTAGTTCTGAGAAGAGAT 58.830 40.000 0.00 0.00 34.02 2.75
337 338 6.312672 GGCAGTTTTAGTTCTGAGAAGAGATC 59.687 42.308 0.00 0.00 34.02 2.75
338 339 6.870965 GCAGTTTTAGTTCTGAGAAGAGATCA 59.129 38.462 0.00 0.00 34.02 2.92
339 340 7.386299 GCAGTTTTAGTTCTGAGAAGAGATCAA 59.614 37.037 0.00 0.00 34.02 2.57
340 341 9.265901 CAGTTTTAGTTCTGAGAAGAGATCAAA 57.734 33.333 0.00 0.00 34.02 2.69
343 344 8.783833 TTTAGTTCTGAGAAGAGATCAAATGG 57.216 34.615 0.00 0.00 0.00 3.16
344 345 6.371595 AGTTCTGAGAAGAGATCAAATGGT 57.628 37.500 0.00 0.00 0.00 3.55
345 346 6.171921 AGTTCTGAGAAGAGATCAAATGGTG 58.828 40.000 0.00 0.00 0.00 4.17
346 347 5.095145 TCTGAGAAGAGATCAAATGGTGG 57.905 43.478 0.00 0.00 0.00 4.61
347 348 3.614092 TGAGAAGAGATCAAATGGTGGC 58.386 45.455 0.00 0.00 0.00 5.01
348 349 3.009363 TGAGAAGAGATCAAATGGTGGCA 59.991 43.478 0.00 0.00 0.00 4.92
349 350 3.618351 AGAAGAGATCAAATGGTGGCAG 58.382 45.455 0.00 0.00 0.00 4.85
350 351 3.009916 AGAAGAGATCAAATGGTGGCAGT 59.990 43.478 0.00 0.00 0.00 4.40
351 352 3.446442 AGAGATCAAATGGTGGCAGTT 57.554 42.857 0.00 0.00 0.00 3.16
352 353 3.771216 AGAGATCAAATGGTGGCAGTTT 58.229 40.909 0.00 0.00 0.00 2.66
353 354 4.922206 AGAGATCAAATGGTGGCAGTTTA 58.078 39.130 0.00 0.00 0.00 2.01
354 355 5.324409 AGAGATCAAATGGTGGCAGTTTAA 58.676 37.500 0.00 0.00 0.00 1.52
355 356 5.774690 AGAGATCAAATGGTGGCAGTTTAAA 59.225 36.000 0.00 0.00 0.00 1.52
356 357 6.267471 AGAGATCAAATGGTGGCAGTTTAAAA 59.733 34.615 0.00 0.00 0.00 1.52
357 358 6.825610 AGATCAAATGGTGGCAGTTTAAAAA 58.174 32.000 0.00 0.00 0.00 1.94
383 384 8.634475 AATTTGTCTTCTCTAACAAAAACTGC 57.366 30.769 4.94 0.00 45.49 4.40
384 385 5.751243 TGTCTTCTCTAACAAAAACTGCC 57.249 39.130 0.00 0.00 0.00 4.85
385 386 5.189928 TGTCTTCTCTAACAAAAACTGCCA 58.810 37.500 0.00 0.00 0.00 4.92
386 387 5.065988 TGTCTTCTCTAACAAAAACTGCCAC 59.934 40.000 0.00 0.00 0.00 5.01
387 388 4.272504 TCTTCTCTAACAAAAACTGCCACG 59.727 41.667 0.00 0.00 0.00 4.94
388 389 3.537580 TCTCTAACAAAAACTGCCACGT 58.462 40.909 0.00 0.00 0.00 4.49
389 390 3.558418 TCTCTAACAAAAACTGCCACGTC 59.442 43.478 0.00 0.00 0.00 4.34
390 391 2.285756 TCTAACAAAAACTGCCACGTCG 59.714 45.455 0.00 0.00 0.00 5.12
391 392 0.524604 AACAAAAACTGCCACGTCGC 60.525 50.000 0.00 0.00 0.00 5.19
392 393 1.355210 CAAAAACTGCCACGTCGCT 59.645 52.632 6.72 0.00 0.00 4.93
393 394 0.657368 CAAAAACTGCCACGTCGCTC 60.657 55.000 6.72 0.00 0.00 5.03
394 395 0.814010 AAAAACTGCCACGTCGCTCT 60.814 50.000 6.72 0.00 0.00 4.09
395 396 0.032952 AAAACTGCCACGTCGCTCTA 59.967 50.000 6.72 0.00 0.00 2.43
396 397 0.032952 AAACTGCCACGTCGCTCTAA 59.967 50.000 6.72 0.00 0.00 2.10
397 398 0.032952 AACTGCCACGTCGCTCTAAA 59.967 50.000 6.72 0.00 0.00 1.85
398 399 0.388649 ACTGCCACGTCGCTCTAAAG 60.389 55.000 6.72 0.00 0.00 1.85
399 400 0.109272 CTGCCACGTCGCTCTAAAGA 60.109 55.000 6.72 0.00 0.00 2.52
400 401 0.388134 TGCCACGTCGCTCTAAAGAC 60.388 55.000 6.72 0.00 0.00 3.01
401 402 0.109226 GCCACGTCGCTCTAAAGACT 60.109 55.000 0.00 0.00 35.38 3.24
402 403 1.618861 CCACGTCGCTCTAAAGACTG 58.381 55.000 0.00 0.00 35.38 3.51
403 404 1.068472 CCACGTCGCTCTAAAGACTGT 60.068 52.381 0.00 0.00 35.38 3.55
404 405 2.243407 CACGTCGCTCTAAAGACTGTC 58.757 52.381 0.00 0.00 35.38 3.51
405 406 1.878088 ACGTCGCTCTAAAGACTGTCA 59.122 47.619 10.88 0.00 35.38 3.58
406 407 2.243407 CGTCGCTCTAAAGACTGTCAC 58.757 52.381 10.88 0.00 35.38 3.67
407 408 2.597520 GTCGCTCTAAAGACTGTCACC 58.402 52.381 10.88 0.00 34.74 4.02
408 409 1.544691 TCGCTCTAAAGACTGTCACCC 59.455 52.381 10.88 0.00 0.00 4.61
409 410 1.404315 CGCTCTAAAGACTGTCACCCC 60.404 57.143 10.88 0.00 0.00 4.95
410 411 1.903183 GCTCTAAAGACTGTCACCCCT 59.097 52.381 10.88 0.00 0.00 4.79
411 412 2.093921 GCTCTAAAGACTGTCACCCCTC 60.094 54.545 10.88 0.00 0.00 4.30
412 413 3.165875 CTCTAAAGACTGTCACCCCTCA 58.834 50.000 10.88 0.00 0.00 3.86
413 414 2.897969 TCTAAAGACTGTCACCCCTCAC 59.102 50.000 10.88 0.00 0.00 3.51
414 415 1.507140 AAAGACTGTCACCCCTCACA 58.493 50.000 10.88 0.00 0.00 3.58
415 416 1.507140 AAGACTGTCACCCCTCACAA 58.493 50.000 10.88 0.00 0.00 3.33
416 417 1.507140 AGACTGTCACCCCTCACAAA 58.493 50.000 10.88 0.00 0.00 2.83
417 418 1.141053 AGACTGTCACCCCTCACAAAC 59.859 52.381 10.88 0.00 0.00 2.93
418 419 1.141053 GACTGTCACCCCTCACAAACT 59.859 52.381 2.24 0.00 0.00 2.66
419 420 2.367567 GACTGTCACCCCTCACAAACTA 59.632 50.000 2.24 0.00 0.00 2.24
420 421 2.775384 ACTGTCACCCCTCACAAACTAA 59.225 45.455 0.00 0.00 0.00 2.24
421 422 3.201266 ACTGTCACCCCTCACAAACTAAA 59.799 43.478 0.00 0.00 0.00 1.85
422 423 4.204012 CTGTCACCCCTCACAAACTAAAA 58.796 43.478 0.00 0.00 0.00 1.52
423 424 4.601084 TGTCACCCCTCACAAACTAAAAA 58.399 39.130 0.00 0.00 0.00 1.94
424 425 5.205056 TGTCACCCCTCACAAACTAAAAAT 58.795 37.500 0.00 0.00 0.00 1.82
425 426 5.068460 TGTCACCCCTCACAAACTAAAAATG 59.932 40.000 0.00 0.00 0.00 2.32
426 427 5.300792 GTCACCCCTCACAAACTAAAAATGA 59.699 40.000 0.00 0.00 0.00 2.57
427 428 5.300792 TCACCCCTCACAAACTAAAAATGAC 59.699 40.000 0.00 0.00 0.00 3.06
428 429 5.068460 CACCCCTCACAAACTAAAAATGACA 59.932 40.000 0.00 0.00 0.00 3.58
429 430 5.301805 ACCCCTCACAAACTAAAAATGACAG 59.698 40.000 0.00 0.00 0.00 3.51
430 431 5.301805 CCCCTCACAAACTAAAAATGACAGT 59.698 40.000 0.00 0.00 0.00 3.55
431 432 6.208644 CCCTCACAAACTAAAAATGACAGTG 58.791 40.000 0.00 0.00 0.00 3.66
432 433 6.039270 CCCTCACAAACTAAAAATGACAGTGA 59.961 38.462 0.00 0.00 33.11 3.41
433 434 7.416213 CCCTCACAAACTAAAAATGACAGTGAA 60.416 37.037 0.00 0.00 33.67 3.18
434 435 7.973388 CCTCACAAACTAAAAATGACAGTGAAA 59.027 33.333 0.00 0.00 33.67 2.69
435 436 9.520204 CTCACAAACTAAAAATGACAGTGAAAT 57.480 29.630 0.00 0.00 33.67 2.17
436 437 9.515020 TCACAAACTAAAAATGACAGTGAAATC 57.485 29.630 0.00 0.00 31.36 2.17
437 438 9.299963 CACAAACTAAAAATGACAGTGAAATCA 57.700 29.630 0.00 0.00 0.00 2.57
441 442 8.955061 ACTAAAAATGACAGTGAAATCATTCG 57.045 30.769 7.65 2.07 43.21 3.34
442 443 6.695292 AAAAATGACAGTGAAATCATTCGC 57.305 33.333 7.65 0.00 43.21 4.70
443 444 5.375417 AAATGACAGTGAAATCATTCGCA 57.625 34.783 7.65 0.00 46.28 5.10
444 445 5.375417 AATGACAGTGAAATCATTCGCAA 57.625 34.783 0.00 0.00 46.28 4.85
445 446 4.408993 TGACAGTGAAATCATTCGCAAG 57.591 40.909 0.00 0.42 46.28 4.01
446 447 3.814842 TGACAGTGAAATCATTCGCAAGT 59.185 39.130 0.00 3.22 46.28 3.16
447 448 4.151258 ACAGTGAAATCATTCGCAAGTG 57.849 40.909 0.00 0.00 46.28 3.16
448 449 3.814842 ACAGTGAAATCATTCGCAAGTGA 59.185 39.130 0.00 0.00 46.28 3.41
449 450 4.275689 ACAGTGAAATCATTCGCAAGTGAA 59.724 37.500 0.00 0.00 46.28 3.18
450 451 4.614284 CAGTGAAATCATTCGCAAGTGAAC 59.386 41.667 0.00 0.00 46.28 3.18
451 452 4.275689 AGTGAAATCATTCGCAAGTGAACA 59.724 37.500 0.00 0.00 46.28 3.18
452 453 5.048504 AGTGAAATCATTCGCAAGTGAACAT 60.049 36.000 0.00 0.00 46.28 2.71
453 454 5.630680 GTGAAATCATTCGCAAGTGAACATT 59.369 36.000 0.00 0.00 43.90 2.71
454 455 5.858049 TGAAATCATTCGCAAGTGAACATTC 59.142 36.000 0.00 2.81 38.46 2.67
455 456 3.454042 TCATTCGCAAGTGAACATTCG 57.546 42.857 0.00 0.00 39.48 3.34
456 457 1.906966 CATTCGCAAGTGAACATTCGC 59.093 47.619 0.00 0.00 37.95 4.70
458 459 2.073117 TCGCAAGTGAACATTCGCTA 57.927 45.000 8.06 0.00 46.51 4.26
459 460 1.992667 TCGCAAGTGAACATTCGCTAG 59.007 47.619 8.06 4.10 46.51 3.42
460 461 1.527793 CGCAAGTGAACATTCGCTAGC 60.528 52.381 4.06 4.06 46.51 3.42
461 462 1.734465 GCAAGTGAACATTCGCTAGCT 59.266 47.619 13.93 0.00 46.51 3.32
462 463 2.930040 GCAAGTGAACATTCGCTAGCTA 59.070 45.455 13.93 0.00 46.51 3.32
463 464 3.370978 GCAAGTGAACATTCGCTAGCTAA 59.629 43.478 13.93 8.86 46.51 3.09
467 468 1.867865 GAACATTCGCTAGCTAAGGGC 59.132 52.381 16.63 5.95 38.04 5.19
471 472 0.686441 TTCGCTAGCTAAGGGCCAGA 60.686 55.000 13.93 0.00 43.05 3.86
484 485 2.430694 AGGGCCAGATTAAAATTTCGCC 59.569 45.455 6.18 0.00 0.00 5.54
485 486 2.430694 GGGCCAGATTAAAATTTCGCCT 59.569 45.455 4.39 0.00 35.45 5.52
486 487 3.118775 GGGCCAGATTAAAATTTCGCCTT 60.119 43.478 4.39 0.00 35.45 4.35
487 488 4.503910 GGCCAGATTAAAATTTCGCCTTT 58.496 39.130 0.00 0.00 32.31 3.11
489 490 4.329801 GCCAGATTAAAATTTCGCCTTTGG 59.670 41.667 0.00 0.00 0.00 3.28
490 491 4.329801 CCAGATTAAAATTTCGCCTTTGGC 59.670 41.667 0.00 0.00 46.75 4.52
507 508 0.748367 GGCCTCCAAAATCTCCGGAC 60.748 60.000 0.00 0.00 0.00 4.79
520 522 3.357504 CCGGACCGGTTTGTATCTC 57.642 57.895 25.54 0.00 42.73 2.75
522 524 0.171903 CGGACCGGTTTGTATCTCGT 59.828 55.000 9.42 0.00 0.00 4.18
528 530 1.784856 CGGTTTGTATCTCGTATGGCG 59.215 52.381 0.00 0.00 43.01 5.69
530 532 1.525619 GTTTGTATCTCGTATGGCGCC 59.474 52.381 22.73 22.73 41.07 6.53
532 534 1.080025 GTATCTCGTATGGCGCCCC 60.080 63.158 26.77 11.11 41.07 5.80
534 536 1.532604 TATCTCGTATGGCGCCCCAG 61.533 60.000 26.77 13.05 46.24 4.45
549 551 4.838152 CAGGCCCGGACGTCATGG 62.838 72.222 18.91 17.71 0.00 3.66
552 554 2.046700 GCCCGGACGTCATGGAAA 60.047 61.111 23.34 0.00 0.00 3.13
556 558 0.732571 CCGGACGTCATGGAAATTGG 59.267 55.000 18.91 0.68 0.00 3.16
557 559 0.098728 CGGACGTCATGGAAATTGGC 59.901 55.000 18.91 0.00 0.00 4.52
559 561 1.173043 GACGTCATGGAAATTGGCCA 58.827 50.000 11.55 0.00 40.24 5.36
568 570 4.637387 TGGAAATTGGCCATTTTGTGAT 57.363 36.364 26.10 4.15 35.02 3.06
569 571 4.325119 TGGAAATTGGCCATTTTGTGATG 58.675 39.130 26.10 0.00 35.02 3.07
573 575 6.151480 GGAAATTGGCCATTTTGTGATGAAAT 59.849 34.615 26.10 1.13 35.02 2.17
574 576 7.309316 GGAAATTGGCCATTTTGTGATGAAATT 60.309 33.333 26.10 7.41 35.02 1.82
575 577 7.527568 AATTGGCCATTTTGTGATGAAATTT 57.472 28.000 6.09 0.00 0.00 1.82
577 579 6.315091 TGGCCATTTTGTGATGAAATTTTG 57.685 33.333 0.00 0.00 0.00 2.44
578 580 6.060136 TGGCCATTTTGTGATGAAATTTTGA 58.940 32.000 0.00 0.00 0.00 2.69
623 626 7.412853 AAGTTTTAGAAAAGTGCCAGGTTTA 57.587 32.000 0.00 0.00 32.20 2.01
651 654 2.124695 CGGGTAGGGAAAGCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
812 841 1.336795 CCGCCATGACCAAAACTTTCC 60.337 52.381 0.00 0.00 0.00 3.13
819 849 3.909732 TGACCAAAACTTTCCTCCATGT 58.090 40.909 0.00 0.00 0.00 3.21
821 851 2.884639 ACCAAAACTTTCCTCCATGTCG 59.115 45.455 0.00 0.00 0.00 4.35
831 868 2.202919 CCATGTCGATGCTCCGCA 60.203 61.111 0.00 0.00 44.86 5.69
876 914 2.106511 CTCTCTCCTTTCACCAACCCAA 59.893 50.000 0.00 0.00 0.00 4.12
877 915 2.106511 TCTCTCCTTTCACCAACCCAAG 59.893 50.000 0.00 0.00 0.00 3.61
878 916 0.961753 CTCCTTTCACCAACCCAAGC 59.038 55.000 0.00 0.00 0.00 4.01
879 917 0.260230 TCCTTTCACCAACCCAAGCA 59.740 50.000 0.00 0.00 0.00 3.91
899 963 0.249741 AGCAAGCAAGCAAGCAAAGG 60.250 50.000 10.52 0.00 36.85 3.11
904 968 0.794473 GCAAGCAAGCAAAGGCAATC 59.206 50.000 0.00 0.00 44.61 2.67
925 990 5.687770 TCGATTGATTGAAGCAAACTCAA 57.312 34.783 0.00 0.00 0.00 3.02
926 991 6.258230 TCGATTGATTGAAGCAAACTCAAT 57.742 33.333 0.00 8.09 38.80 2.57
927 992 7.376435 TCGATTGATTGAAGCAAACTCAATA 57.624 32.000 0.00 0.00 36.85 1.90
928 993 7.243487 TCGATTGATTGAAGCAAACTCAATAC 58.757 34.615 0.00 4.07 36.85 1.89
992 1081 1.686325 ATCATCCCCGTCTCCAACCG 61.686 60.000 0.00 0.00 0.00 4.44
1265 1411 0.742281 ATCGTGTGCCACTGATGAGC 60.742 55.000 0.00 0.00 30.95 4.26
1326 1493 5.514279 GTGTGTGAGACCAATTCTTTCTTG 58.486 41.667 0.00 0.00 33.22 3.02
1359 1528 3.242284 CGTATGATCGGCGTGTTCATTTT 60.242 43.478 20.92 7.27 37.94 1.82
1360 1529 2.610219 TGATCGGCGTGTTCATTTTG 57.390 45.000 6.85 0.00 0.00 2.44
1372 1544 5.457473 CGTGTTCATTTTGGTTGTTAACTCC 59.543 40.000 7.22 9.86 0.00 3.85
1398 1571 3.579626 GACTGAAGCCGCGTGTTGC 62.580 63.158 4.92 0.00 41.47 4.17
1404 1583 4.374702 GCCGCGTGTTGCACAGAG 62.375 66.667 4.92 0.00 46.97 3.35
1412 1591 2.287608 CGTGTTGCACAGAGTACAGAGA 60.288 50.000 0.00 0.00 33.40 3.10
1413 1592 3.717707 GTGTTGCACAGAGTACAGAGAA 58.282 45.455 0.00 0.00 34.08 2.87
1454 1638 5.215160 GCCGTGATTATTTGGATAAGCTTG 58.785 41.667 9.86 0.00 35.63 4.01
1455 1639 5.215160 CCGTGATTATTTGGATAAGCTTGC 58.785 41.667 9.86 0.41 35.63 4.01
1456 1640 5.009010 CCGTGATTATTTGGATAAGCTTGCT 59.991 40.000 9.86 0.00 35.63 3.91
1457 1641 5.911280 CGTGATTATTTGGATAAGCTTGCTG 59.089 40.000 9.86 0.00 35.63 4.41
1458 1642 5.689068 GTGATTATTTGGATAAGCTTGCTGC 59.311 40.000 9.86 2.17 35.63 5.25
1470 1654 3.745332 GCTTGCTGCTTTGTTTTTGTT 57.255 38.095 0.00 0.00 38.95 2.83
1471 1655 4.082274 GCTTGCTGCTTTGTTTTTGTTT 57.918 36.364 0.00 0.00 38.95 2.83
1472 1656 4.475028 GCTTGCTGCTTTGTTTTTGTTTT 58.525 34.783 0.00 0.00 38.95 2.43
1473 1657 4.916831 GCTTGCTGCTTTGTTTTTGTTTTT 59.083 33.333 0.00 0.00 38.95 1.94
1474 1658 5.164167 GCTTGCTGCTTTGTTTTTGTTTTTG 60.164 36.000 0.00 0.00 38.95 2.44
1475 1659 5.429957 TGCTGCTTTGTTTTTGTTTTTGT 57.570 30.435 0.00 0.00 0.00 2.83
1476 1660 5.825507 TGCTGCTTTGTTTTTGTTTTTGTT 58.174 29.167 0.00 0.00 0.00 2.83
1477 1661 6.268566 TGCTGCTTTGTTTTTGTTTTTGTTT 58.731 28.000 0.00 0.00 0.00 2.83
1478 1662 6.753744 TGCTGCTTTGTTTTTGTTTTTGTTTT 59.246 26.923 0.00 0.00 0.00 2.43
1479 1663 7.276438 TGCTGCTTTGTTTTTGTTTTTGTTTTT 59.724 25.926 0.00 0.00 0.00 1.94
1480 1664 7.578380 GCTGCTTTGTTTTTGTTTTTGTTTTTG 59.422 29.630 0.00 0.00 0.00 2.44
1481 1665 7.898946 TGCTTTGTTTTTGTTTTTGTTTTTGG 58.101 26.923 0.00 0.00 0.00 3.28
1492 1676 8.617290 TGTTTTTGTTTTTGGTTTTAAGGCTA 57.383 26.923 0.00 0.00 0.00 3.93
1518 1705 0.103755 TCATGACGGAGCAGAGATGC 59.896 55.000 0.00 0.00 0.00 3.91
1528 1715 3.630892 AGCAGAGATGCTCAGTCAAAT 57.369 42.857 0.00 0.00 42.12 2.32
1540 1749 5.705441 TGCTCAGTCAAATAATCCGAAAAGT 59.295 36.000 0.00 0.00 0.00 2.66
1556 1765 4.524869 GTGGTGGACACGTGTGAA 57.475 55.556 28.82 11.16 40.85 3.18
1562 1771 2.542597 GTGGACACGTGTGAACTACAA 58.457 47.619 28.82 0.00 41.89 2.41
1580 1818 0.179001 AACCTGCTACACCACCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
1592 1830 2.118404 ACCCAACAACCAGCACACG 61.118 57.895 0.00 0.00 0.00 4.49
1608 1848 3.812019 CGCGTCACGTAGAGGGCT 61.812 66.667 0.00 0.00 36.87 5.19
1609 1849 2.572284 GCGTCACGTAGAGGGCTT 59.428 61.111 0.00 0.00 32.81 4.35
1610 1850 1.805945 GCGTCACGTAGAGGGCTTG 60.806 63.158 0.00 0.00 32.81 4.01
1611 1851 1.805945 CGTCACGTAGAGGGCTTGC 60.806 63.158 0.00 0.00 0.00 4.01
1652 1895 2.401766 CCCGCATGGCAGTGAGTTC 61.402 63.158 0.00 0.00 0.00 3.01
1653 1896 1.672030 CCGCATGGCAGTGAGTTCA 60.672 57.895 0.00 0.00 0.00 3.18
1655 1898 0.592637 CGCATGGCAGTGAGTTCAAA 59.407 50.000 0.00 0.00 0.00 2.69
1659 1902 1.165907 TGGCAGTGAGTTCAAAGCGG 61.166 55.000 0.00 0.00 0.00 5.52
1660 1903 1.081840 GCAGTGAGTTCAAAGCGGC 60.082 57.895 0.00 0.00 0.00 6.53
1665 1908 3.058293 CAGTGAGTTCAAAGCGGCAAATA 60.058 43.478 1.45 0.00 0.00 1.40
1680 1923 4.160736 GCAAATAGCCTCACGAAAAACT 57.839 40.909 0.00 0.00 37.23 2.66
1681 1924 4.546570 GCAAATAGCCTCACGAAAAACTT 58.453 39.130 0.00 0.00 37.23 2.66
1684 1927 6.314784 CAAATAGCCTCACGAAAAACTTAGG 58.685 40.000 0.00 0.00 0.00 2.69
1685 1928 2.779506 AGCCTCACGAAAAACTTAGGG 58.220 47.619 0.00 0.00 0.00 3.53
1686 1929 1.199327 GCCTCACGAAAAACTTAGGGC 59.801 52.381 0.00 0.00 0.00 5.19
1688 1931 1.463444 CTCACGAAAAACTTAGGGCGG 59.537 52.381 0.00 0.00 0.00 6.13
1705 2367 1.525941 CGGAAAAACTTAGGGCGGAA 58.474 50.000 0.00 0.00 0.00 4.30
1710 2372 4.437794 GGAAAAACTTAGGGCGGAAATACG 60.438 45.833 0.00 0.00 0.00 3.06
1713 2375 2.105766 ACTTAGGGCGGAAATACGACT 58.894 47.619 0.00 0.00 42.77 4.18
1722 2384 3.430895 GCGGAAATACGACTTTCTTGTCA 59.569 43.478 12.02 0.00 36.82 3.58
1733 2395 3.462205 ACTTTCTTGTCAACCCCTAACCT 59.538 43.478 0.00 0.00 0.00 3.50
1739 2401 3.589641 TGTCAACCCCTAACCTAAGACA 58.410 45.455 0.00 0.00 32.91 3.41
1741 2403 2.570302 TCAACCCCTAACCTAAGACAGC 59.430 50.000 0.00 0.00 0.00 4.40
1744 2406 3.644335 ACCCCTAACCTAAGACAGCTAG 58.356 50.000 0.00 0.00 0.00 3.42
1758 2420 3.149981 ACAGCTAGGGCAAACTTTTCTC 58.850 45.455 0.00 0.00 41.70 2.87
1774 2436 1.142748 CTCCTCAGACATCACCGGC 59.857 63.158 0.00 0.00 0.00 6.13
1777 2439 1.226802 CTCAGACATCACCGGCGAG 60.227 63.158 9.30 0.06 0.00 5.03
1778 2440 1.938657 CTCAGACATCACCGGCGAGT 61.939 60.000 9.30 0.86 0.00 4.18
1793 2455 1.218316 GAGTCCGTGGATTCGCCTT 59.782 57.895 0.00 0.00 37.63 4.35
1797 2459 2.890474 CGTGGATTCGCCTTCCCG 60.890 66.667 0.00 0.00 37.63 5.14
1800 2462 2.061578 TGGATTCGCCTTCCCGCTA 61.062 57.895 0.00 0.00 37.63 4.26
1802 2464 1.594564 GATTCGCCTTCCCGCTACC 60.595 63.158 0.00 0.00 0.00 3.18
1803 2465 2.029307 GATTCGCCTTCCCGCTACCT 62.029 60.000 0.00 0.00 0.00 3.08
1804 2466 2.311688 ATTCGCCTTCCCGCTACCTG 62.312 60.000 0.00 0.00 0.00 4.00
1806 2468 4.096003 GCCTTCCCGCTACCTGCA 62.096 66.667 0.00 0.00 43.06 4.41
1807 2469 2.668632 CCTTCCCGCTACCTGCAA 59.331 61.111 0.00 0.00 43.06 4.08
1808 2470 1.745489 CCTTCCCGCTACCTGCAAC 60.745 63.158 0.00 0.00 43.06 4.17
1809 2471 1.296715 CTTCCCGCTACCTGCAACT 59.703 57.895 0.00 0.00 43.06 3.16
1810 2472 0.741221 CTTCCCGCTACCTGCAACTC 60.741 60.000 0.00 0.00 43.06 3.01
1811 2473 2.125106 CCCGCTACCTGCAACTCC 60.125 66.667 0.00 0.00 43.06 3.85
1812 2474 2.509336 CCGCTACCTGCAACTCCG 60.509 66.667 0.00 0.00 43.06 4.63
1813 2475 2.571757 CGCTACCTGCAACTCCGA 59.428 61.111 0.00 0.00 43.06 4.55
1814 2476 1.805945 CGCTACCTGCAACTCCGAC 60.806 63.158 0.00 0.00 43.06 4.79
1815 2477 1.805945 GCTACCTGCAACTCCGACG 60.806 63.158 0.00 0.00 42.31 5.12
1816 2478 1.153823 CTACCTGCAACTCCGACGG 60.154 63.158 7.84 7.84 0.00 4.79
1817 2479 3.291101 TACCTGCAACTCCGACGGC 62.291 63.158 9.66 0.00 0.00 5.68
1837 2499 3.739613 GTGGCGGGGAGGGGAATT 61.740 66.667 0.00 0.00 0.00 2.17
1838 2500 3.416880 TGGCGGGGAGGGGAATTC 61.417 66.667 0.00 0.00 0.00 2.17
1839 2501 3.097162 GGCGGGGAGGGGAATTCT 61.097 66.667 5.23 0.00 0.00 2.40
1840 2502 2.193248 GCGGGGAGGGGAATTCTG 59.807 66.667 5.23 0.00 0.00 3.02
1841 2503 2.919043 CGGGGAGGGGAATTCTGG 59.081 66.667 5.23 0.00 0.00 3.86
1842 2504 2.001269 CGGGGAGGGGAATTCTGGT 61.001 63.158 5.23 0.00 0.00 4.00
1843 2505 1.615262 GGGGAGGGGAATTCTGGTG 59.385 63.158 5.23 0.00 0.00 4.17
1844 2506 1.076705 GGGAGGGGAATTCTGGTGC 60.077 63.158 5.23 0.00 0.00 5.01
1845 2507 1.076705 GGAGGGGAATTCTGGTGCC 60.077 63.158 5.23 0.00 0.00 5.01
1846 2508 1.691219 GAGGGGAATTCTGGTGCCA 59.309 57.895 5.23 0.00 0.00 4.92
1847 2509 0.681243 GAGGGGAATTCTGGTGCCAC 60.681 60.000 5.23 0.00 0.00 5.01
1848 2510 1.682344 GGGGAATTCTGGTGCCACC 60.682 63.158 7.01 7.01 39.22 4.61
1849 2511 2.046285 GGGAATTCTGGTGCCACCG 61.046 63.158 9.78 4.37 42.58 4.94
1850 2512 2.700773 GGAATTCTGGTGCCACCGC 61.701 63.158 9.78 0.00 42.58 5.68
1851 2513 2.676471 AATTCTGGTGCCACCGCC 60.676 61.111 9.78 0.00 42.58 6.13
1852 2514 3.210012 AATTCTGGTGCCACCGCCT 62.210 57.895 9.78 0.00 42.58 5.52
1853 2515 3.628646 ATTCTGGTGCCACCGCCTC 62.629 63.158 9.78 0.00 42.58 4.70
1872 2534 8.177980 CCGCCTCGGTTATTAGTTTATATTAC 57.822 38.462 0.00 0.00 42.73 1.89
1873 2535 7.814107 CCGCCTCGGTTATTAGTTTATATTACA 59.186 37.037 0.00 0.00 42.73 2.41
1892 2554 6.494893 TTACAGTTTATTAGTGCTTGCAGG 57.505 37.500 0.00 0.00 0.00 4.85
1913 2575 4.101448 GGCACTCGGGCAGATGGT 62.101 66.667 0.00 0.00 42.77 3.55
1914 2576 2.821366 GCACTCGGGCAGATGGTG 60.821 66.667 3.27 3.27 0.00 4.17
1921 2583 1.178534 CGGGCAGATGGTGGTGTTTT 61.179 55.000 0.00 0.00 0.00 2.43
1947 2609 2.032808 GCGAGTTTGTCTTTCGAGCTTT 60.033 45.455 0.00 0.00 36.49 3.51
1949 2611 3.245284 CGAGTTTGTCTTTCGAGCTTTGA 59.755 43.478 0.00 0.00 36.49 2.69
1966 2628 1.035932 TGATCCCCCTCGAGTTCGTC 61.036 60.000 12.31 3.65 40.80 4.20
1967 2629 1.736365 GATCCCCCTCGAGTTCGTCC 61.736 65.000 12.31 0.00 40.80 4.79
1973 2635 0.039798 CCTCGAGTTCGTCCGTTTGA 60.040 55.000 12.31 0.00 40.80 2.69
1978 2640 3.044986 CGAGTTCGTCCGTTTGAAAGTA 58.955 45.455 0.00 0.00 34.11 2.24
1984 2646 3.058016 TCGTCCGTTTGAAAGTAGTCGAT 60.058 43.478 0.00 0.00 0.00 3.59
1989 2651 4.235360 CGTTTGAAAGTAGTCGATGGAGT 58.765 43.478 0.00 0.00 0.00 3.85
1996 2658 1.135199 GTAGTCGATGGAGTTTCGGCA 60.135 52.381 0.36 0.00 43.38 5.69
2004 2666 4.636249 GATGGAGTTTCGGCATAGATTCT 58.364 43.478 0.00 0.00 0.00 2.40
2005 2667 4.487714 TGGAGTTTCGGCATAGATTCTT 57.512 40.909 0.00 0.00 0.00 2.52
2009 2671 5.815740 GGAGTTTCGGCATAGATTCTTGTTA 59.184 40.000 0.00 0.00 0.00 2.41
2010 2672 6.483640 GGAGTTTCGGCATAGATTCTTGTTAT 59.516 38.462 0.00 0.00 0.00 1.89
2011 2673 7.251704 AGTTTCGGCATAGATTCTTGTTATG 57.748 36.000 0.00 0.00 0.00 1.90
2013 2675 7.336931 AGTTTCGGCATAGATTCTTGTTATGTT 59.663 33.333 0.00 0.00 0.00 2.71
2014 2676 8.609176 GTTTCGGCATAGATTCTTGTTATGTTA 58.391 33.333 0.00 0.00 0.00 2.41
2018 2680 8.773645 CGGCATAGATTCTTGTTATGTTATTGA 58.226 33.333 0.00 0.00 0.00 2.57
2024 2686 7.716998 AGATTCTTGTTATGTTATTGAGGCGAT 59.283 33.333 0.00 0.00 0.00 4.58
2025 2687 8.902540 ATTCTTGTTATGTTATTGAGGCGATA 57.097 30.769 0.00 0.00 0.00 2.92
2035 2697 2.170012 TGAGGCGATAAGGTTAGGGT 57.830 50.000 0.00 0.00 0.00 4.34
2038 2700 3.203716 GAGGCGATAAGGTTAGGGTTTG 58.796 50.000 0.00 0.00 0.00 2.93
2043 2705 4.331992 GCGATAAGGTTAGGGTTTGTCTTC 59.668 45.833 0.00 0.00 0.00 2.87
2044 2706 4.565564 CGATAAGGTTAGGGTTTGTCTTCG 59.434 45.833 0.00 0.00 0.00 3.79
2059 2727 3.119065 TGTCTTCGTGTACTTGGTGTCAA 60.119 43.478 0.00 0.00 0.00 3.18
2072 2740 6.002062 CTTGGTGTCAAGTGTTTTAGATCC 57.998 41.667 0.00 0.00 43.92 3.36
2079 2761 2.973945 AGTGTTTTAGATCCAGGCGAC 58.026 47.619 0.00 0.00 0.00 5.19
2082 2764 1.925185 GTTTTAGATCCAGGCGACGAC 59.075 52.381 0.00 0.00 0.00 4.34
2085 2767 1.725557 TAGATCCAGGCGACGACTGC 61.726 60.000 25.65 11.89 37.36 4.40
2094 2776 3.749064 GACGACTGCGGCTCCAGA 61.749 66.667 10.42 0.00 43.91 3.86
2095 2777 3.691744 GACGACTGCGGCTCCAGAG 62.692 68.421 10.42 6.89 43.91 3.35
2100 2782 1.185618 ACTGCGGCTCCAGAGTGTTA 61.186 55.000 10.42 0.00 36.67 2.41
2110 2792 4.463186 GCTCCAGAGTGTTAGTTCTTAGGA 59.537 45.833 0.00 0.00 0.00 2.94
2111 2793 5.393678 GCTCCAGAGTGTTAGTTCTTAGGAG 60.394 48.000 0.00 0.00 37.71 3.69
2112 2794 5.017490 TCCAGAGTGTTAGTTCTTAGGAGG 58.983 45.833 0.00 0.00 0.00 4.30
2113 2795 5.017490 CCAGAGTGTTAGTTCTTAGGAGGA 58.983 45.833 0.00 0.00 0.00 3.71
2115 2797 4.701171 AGAGTGTTAGTTCTTAGGAGGACG 59.299 45.833 0.00 0.00 36.44 4.79
2124 2806 2.069273 CTTAGGAGGACGTGCACAAAG 58.931 52.381 18.64 7.10 0.00 2.77
2130 2812 2.354821 GAGGACGTGCACAAAGACTTTT 59.645 45.455 18.64 0.00 0.00 2.27
2132 2814 2.354821 GGACGTGCACAAAGACTTTTCT 59.645 45.455 18.64 0.00 0.00 2.52
2133 2815 3.558418 GGACGTGCACAAAGACTTTTCTA 59.442 43.478 18.64 0.00 0.00 2.10
2141 2823 6.989759 TGCACAAAGACTTTTCTACTGTCATA 59.010 34.615 0.00 0.00 29.47 2.15
2156 2838 9.653287 TCTACTGTCATAAATAAGGTCAAACTG 57.347 33.333 0.00 0.00 0.00 3.16
2158 2840 6.151144 ACTGTCATAAATAAGGTCAAACTGGC 59.849 38.462 0.00 0.00 0.00 4.85
2181 2863 1.321743 CGATAGAGCAACAACAGCGAC 59.678 52.381 0.00 0.00 37.01 5.19
2182 2864 1.321743 GATAGAGCAACAACAGCGACG 59.678 52.381 0.00 0.00 37.01 5.12
2183 2865 0.031585 TAGAGCAACAACAGCGACGT 59.968 50.000 0.00 0.00 37.01 4.34
2184 2866 1.083401 GAGCAACAACAGCGACGTG 60.083 57.895 0.00 0.00 37.01 4.49
2186 2868 1.367665 GCAACAACAGCGACGTGTC 60.368 57.895 0.00 0.00 0.00 3.67
2205 2887 1.134220 TCGGCAGGTTTTTCTGACTGT 60.134 47.619 0.00 0.00 40.53 3.55
2237 2919 4.511454 TCGTTCAGTGGTCTTGAAATCTTG 59.489 41.667 0.00 0.00 0.00 3.02
2240 2922 6.376978 GTTCAGTGGTCTTGAAATCTTGATG 58.623 40.000 0.00 0.00 0.00 3.07
2244 2926 7.388776 TCAGTGGTCTTGAAATCTTGATGTAAG 59.611 37.037 0.00 0.00 37.76 2.34
2246 2928 7.721399 AGTGGTCTTGAAATCTTGATGTAAGTT 59.279 33.333 0.00 0.00 37.65 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.183904 CCTAACCTTATCCAATAAGCATGGC 59.816 44.000 0.00 0.00 40.65 4.40
2 3 6.431234 GTCCTAACCTTATCCAATAAGCATGG 59.569 42.308 0.00 0.00 40.65 3.66
3 4 6.431234 GGTCCTAACCTTATCCAATAAGCATG 59.569 42.308 1.89 0.00 42.80 4.06
5 6 5.430417 TGGTCCTAACCTTATCCAATAAGCA 59.570 40.000 1.89 0.00 46.60 3.91
6 7 5.937111 TGGTCCTAACCTTATCCAATAAGC 58.063 41.667 1.89 0.00 46.60 3.09
7 8 6.942576 CCATGGTCCTAACCTTATCCAATAAG 59.057 42.308 2.57 0.62 46.60 1.73
8 9 6.183361 CCCATGGTCCTAACCTTATCCAATAA 60.183 42.308 11.73 0.00 46.60 1.40
9 10 5.312178 CCCATGGTCCTAACCTTATCCAATA 59.688 44.000 11.73 0.00 46.60 1.90
10 11 4.106341 CCCATGGTCCTAACCTTATCCAAT 59.894 45.833 11.73 0.00 46.60 3.16
11 12 3.461831 CCCATGGTCCTAACCTTATCCAA 59.538 47.826 11.73 0.00 46.60 3.53
12 13 3.053077 CCCATGGTCCTAACCTTATCCA 58.947 50.000 11.73 0.00 46.60 3.41
13 14 2.224793 GCCCATGGTCCTAACCTTATCC 60.225 54.545 11.73 0.00 46.60 2.59
14 15 2.711547 AGCCCATGGTCCTAACCTTATC 59.288 50.000 11.73 0.00 46.60 1.75
15 16 2.789219 AGCCCATGGTCCTAACCTTAT 58.211 47.619 11.73 0.00 46.60 1.73
16 17 2.280308 AGCCCATGGTCCTAACCTTA 57.720 50.000 11.73 0.00 46.60 2.69
17 18 2.280308 TAGCCCATGGTCCTAACCTT 57.720 50.000 11.73 0.00 46.60 3.50
18 19 2.514726 ATAGCCCATGGTCCTAACCT 57.485 50.000 11.73 0.00 46.60 3.50
19 20 3.595190 AAATAGCCCATGGTCCTAACC 57.405 47.619 11.73 0.00 46.66 2.85
38 39 3.449632 GTTGCAGCGGGAGTTTTAAAAA 58.550 40.909 1.31 0.00 0.00 1.94
39 40 2.541999 CGTTGCAGCGGGAGTTTTAAAA 60.542 45.455 15.84 0.00 0.00 1.52
40 41 1.002251 CGTTGCAGCGGGAGTTTTAAA 60.002 47.619 15.84 0.00 0.00 1.52
41 42 0.589223 CGTTGCAGCGGGAGTTTTAA 59.411 50.000 15.84 0.00 0.00 1.52
42 43 1.847890 GCGTTGCAGCGGGAGTTTTA 61.848 55.000 24.49 0.00 0.00 1.52
43 44 3.030652 CGTTGCAGCGGGAGTTTT 58.969 55.556 15.84 0.00 0.00 2.43
44 45 3.660111 GCGTTGCAGCGGGAGTTT 61.660 61.111 24.49 0.00 0.00 2.66
45 46 4.927782 TGCGTTGCAGCGGGAGTT 62.928 61.111 24.49 0.00 40.67 3.01
60 61 1.226379 ATAGCAAACATGCGCGTGC 60.226 52.632 28.93 15.48 40.27 5.34
61 62 1.465991 GCATAGCAAACATGCGCGTG 61.466 55.000 27.53 27.53 39.43 5.34
62 63 1.226379 GCATAGCAAACATGCGCGT 60.226 52.632 8.43 0.00 39.43 6.01
63 64 3.592369 GCATAGCAAACATGCGCG 58.408 55.556 0.00 0.00 39.43 6.86
89 90 9.477484 CGATAATAAGGTTAAGCAGATTAGTGT 57.523 33.333 7.52 0.00 0.00 3.55
90 91 9.692749 TCGATAATAAGGTTAAGCAGATTAGTG 57.307 33.333 7.52 6.87 0.00 2.74
94 95 9.561069 AACATCGATAATAAGGTTAAGCAGATT 57.439 29.630 7.52 8.12 0.00 2.40
95 96 9.561069 AAACATCGATAATAAGGTTAAGCAGAT 57.439 29.630 7.52 0.00 0.00 2.90
96 97 8.958119 AAACATCGATAATAAGGTTAAGCAGA 57.042 30.769 7.52 0.00 0.00 4.26
130 131 9.987726 TCCATTATGCACCATTTTATATATCCA 57.012 29.630 0.00 0.00 0.00 3.41
137 138 9.902684 TTCATTTTCCATTATGCACCATTTTAT 57.097 25.926 0.00 0.00 0.00 1.40
138 139 9.381033 CTTCATTTTCCATTATGCACCATTTTA 57.619 29.630 0.00 0.00 0.00 1.52
139 140 7.148205 GCTTCATTTTCCATTATGCACCATTTT 60.148 33.333 0.00 0.00 0.00 1.82
140 141 6.316890 GCTTCATTTTCCATTATGCACCATTT 59.683 34.615 0.00 0.00 0.00 2.32
141 142 5.818857 GCTTCATTTTCCATTATGCACCATT 59.181 36.000 0.00 0.00 0.00 3.16
142 143 5.362263 GCTTCATTTTCCATTATGCACCAT 58.638 37.500 0.00 0.00 0.00 3.55
143 144 4.382901 GGCTTCATTTTCCATTATGCACCA 60.383 41.667 0.00 0.00 0.00 4.17
144 145 4.122046 GGCTTCATTTTCCATTATGCACC 58.878 43.478 0.00 0.00 0.00 5.01
145 146 3.798337 CGGCTTCATTTTCCATTATGCAC 59.202 43.478 0.00 0.00 0.00 4.57
146 147 3.181477 CCGGCTTCATTTTCCATTATGCA 60.181 43.478 0.00 0.00 0.00 3.96
147 148 3.181476 ACCGGCTTCATTTTCCATTATGC 60.181 43.478 0.00 0.00 0.00 3.14
148 149 4.654091 ACCGGCTTCATTTTCCATTATG 57.346 40.909 0.00 0.00 0.00 1.90
149 150 4.466015 ACAACCGGCTTCATTTTCCATTAT 59.534 37.500 0.00 0.00 0.00 1.28
150 151 3.829601 ACAACCGGCTTCATTTTCCATTA 59.170 39.130 0.00 0.00 0.00 1.90
151 152 2.632512 ACAACCGGCTTCATTTTCCATT 59.367 40.909 0.00 0.00 0.00 3.16
152 153 2.029110 CACAACCGGCTTCATTTTCCAT 60.029 45.455 0.00 0.00 0.00 3.41
153 154 1.339610 CACAACCGGCTTCATTTTCCA 59.660 47.619 0.00 0.00 0.00 3.53
154 155 1.339929 ACACAACCGGCTTCATTTTCC 59.660 47.619 0.00 0.00 0.00 3.13
155 156 2.607038 GGACACAACCGGCTTCATTTTC 60.607 50.000 0.00 0.00 0.00 2.29
156 157 1.339929 GGACACAACCGGCTTCATTTT 59.660 47.619 0.00 0.00 0.00 1.82
157 158 0.958822 GGACACAACCGGCTTCATTT 59.041 50.000 0.00 0.00 0.00 2.32
158 159 0.893727 GGGACACAACCGGCTTCATT 60.894 55.000 0.00 0.00 0.00 2.57
159 160 1.303317 GGGACACAACCGGCTTCAT 60.303 57.895 0.00 0.00 0.00 2.57
160 161 1.990160 AAGGGACACAACCGGCTTCA 61.990 55.000 0.00 0.00 0.00 3.02
161 162 0.822121 AAAGGGACACAACCGGCTTC 60.822 55.000 0.00 0.00 0.00 3.86
162 163 0.396556 AAAAGGGACACAACCGGCTT 60.397 50.000 0.00 0.00 0.00 4.35
163 164 0.396556 AAAAAGGGACACAACCGGCT 60.397 50.000 0.00 0.00 0.00 5.52
164 165 2.120765 AAAAAGGGACACAACCGGC 58.879 52.632 0.00 0.00 0.00 6.13
190 191 3.600694 AAATGCCCGTGCGTTGCA 61.601 55.556 0.00 8.11 45.88 4.08
191 192 3.105157 CAAATGCCCGTGCGTTGC 61.105 61.111 0.00 0.00 45.88 4.17
192 193 2.015627 CACAAATGCCCGTGCGTTG 61.016 57.895 0.00 1.29 45.88 4.10
248 249 9.429359 CGATTGCTAGATAGGATTTCTGTTAAT 57.571 33.333 0.00 0.00 0.00 1.40
249 250 8.421784 ACGATTGCTAGATAGGATTTCTGTTAA 58.578 33.333 0.00 0.00 0.00 2.01
250 251 7.952671 ACGATTGCTAGATAGGATTTCTGTTA 58.047 34.615 0.00 0.00 0.00 2.41
251 252 6.821388 ACGATTGCTAGATAGGATTTCTGTT 58.179 36.000 0.00 0.00 0.00 3.16
252 253 6.412362 ACGATTGCTAGATAGGATTTCTGT 57.588 37.500 0.00 0.00 0.00 3.41
253 254 6.088749 CGAACGATTGCTAGATAGGATTTCTG 59.911 42.308 0.00 0.00 0.00 3.02
254 255 6.153067 CGAACGATTGCTAGATAGGATTTCT 58.847 40.000 0.00 0.00 0.00 2.52
255 256 5.164041 GCGAACGATTGCTAGATAGGATTTC 60.164 44.000 0.00 0.00 32.79 2.17
256 257 4.686554 GCGAACGATTGCTAGATAGGATTT 59.313 41.667 0.00 0.00 32.79 2.17
257 258 4.021894 AGCGAACGATTGCTAGATAGGATT 60.022 41.667 5.48 0.00 44.77 3.01
258 259 3.508012 AGCGAACGATTGCTAGATAGGAT 59.492 43.478 5.48 0.00 44.77 3.24
259 260 2.885266 AGCGAACGATTGCTAGATAGGA 59.115 45.455 5.48 0.00 44.77 2.94
260 261 2.983136 CAGCGAACGATTGCTAGATAGG 59.017 50.000 7.15 0.00 44.82 2.57
261 262 2.983136 CCAGCGAACGATTGCTAGATAG 59.017 50.000 7.15 0.00 44.82 2.08
262 263 2.288213 CCCAGCGAACGATTGCTAGATA 60.288 50.000 7.15 0.00 44.82 1.98
263 264 1.539065 CCCAGCGAACGATTGCTAGAT 60.539 52.381 7.15 0.00 44.82 1.98
264 265 0.179111 CCCAGCGAACGATTGCTAGA 60.179 55.000 7.15 0.00 44.82 2.43
265 266 0.179111 TCCCAGCGAACGATTGCTAG 60.179 55.000 7.15 0.00 44.82 3.42
266 267 0.179111 CTCCCAGCGAACGATTGCTA 60.179 55.000 7.15 0.00 44.82 3.49
268 269 1.424493 CTCTCCCAGCGAACGATTGC 61.424 60.000 0.00 0.00 36.07 3.56
269 270 0.807667 CCTCTCCCAGCGAACGATTG 60.808 60.000 0.00 0.00 0.00 2.67
270 271 1.517832 CCTCTCCCAGCGAACGATT 59.482 57.895 0.00 0.00 0.00 3.34
271 272 2.427245 CCCTCTCCCAGCGAACGAT 61.427 63.158 0.00 0.00 0.00 3.73
272 273 3.068691 CCCTCTCCCAGCGAACGA 61.069 66.667 0.00 0.00 0.00 3.85
273 274 4.148825 CCCCTCTCCCAGCGAACG 62.149 72.222 0.00 0.00 0.00 3.95
274 275 3.003763 ACCCCTCTCCCAGCGAAC 61.004 66.667 0.00 0.00 0.00 3.95
275 276 3.003173 CACCCCTCTCCCAGCGAA 61.003 66.667 0.00 0.00 0.00 4.70
276 277 3.992641 TCACCCCTCTCCCAGCGA 61.993 66.667 0.00 0.00 0.00 4.93
277 278 3.775654 GTCACCCCTCTCCCAGCG 61.776 72.222 0.00 0.00 0.00 5.18
278 279 1.779061 TTTGTCACCCCTCTCCCAGC 61.779 60.000 0.00 0.00 0.00 4.85
279 280 0.036875 GTTTGTCACCCCTCTCCCAG 59.963 60.000 0.00 0.00 0.00 4.45
280 281 1.764571 CGTTTGTCACCCCTCTCCCA 61.765 60.000 0.00 0.00 0.00 4.37
281 282 1.003718 CGTTTGTCACCCCTCTCCC 60.004 63.158 0.00 0.00 0.00 4.30
282 283 0.395312 TTCGTTTGTCACCCCTCTCC 59.605 55.000 0.00 0.00 0.00 3.71
283 284 1.070289 AGTTCGTTTGTCACCCCTCTC 59.930 52.381 0.00 0.00 0.00 3.20
284 285 1.129058 AGTTCGTTTGTCACCCCTCT 58.871 50.000 0.00 0.00 0.00 3.69
285 286 1.963172 AAGTTCGTTTGTCACCCCTC 58.037 50.000 0.00 0.00 0.00 4.30
286 287 2.430248 AAAGTTCGTTTGTCACCCCT 57.570 45.000 0.00 0.00 0.00 4.79
287 288 3.513680 AAAAAGTTCGTTTGTCACCCC 57.486 42.857 0.00 0.00 0.00 4.95
305 306 8.458573 TCTCAGAACTAAAACTGCCATAAAAA 57.541 30.769 0.00 0.00 34.57 1.94
306 307 8.458573 TTCTCAGAACTAAAACTGCCATAAAA 57.541 30.769 0.00 0.00 34.57 1.52
307 308 7.936847 TCTTCTCAGAACTAAAACTGCCATAAA 59.063 33.333 0.00 0.00 34.57 1.40
308 309 7.450074 TCTTCTCAGAACTAAAACTGCCATAA 58.550 34.615 0.00 0.00 34.57 1.90
309 310 7.004555 TCTTCTCAGAACTAAAACTGCCATA 57.995 36.000 0.00 0.00 34.57 2.74
310 311 5.869579 TCTTCTCAGAACTAAAACTGCCAT 58.130 37.500 0.00 0.00 34.57 4.40
311 312 5.070446 TCTCTTCTCAGAACTAAAACTGCCA 59.930 40.000 0.00 0.00 34.57 4.92
312 313 5.542779 TCTCTTCTCAGAACTAAAACTGCC 58.457 41.667 0.00 0.00 34.57 4.85
313 314 6.870965 TGATCTCTTCTCAGAACTAAAACTGC 59.129 38.462 0.00 0.00 34.57 4.40
314 315 8.824159 TTGATCTCTTCTCAGAACTAAAACTG 57.176 34.615 0.00 0.00 35.72 3.16
317 318 9.224267 CCATTTGATCTCTTCTCAGAACTAAAA 57.776 33.333 0.00 0.00 0.00 1.52
318 319 8.378565 ACCATTTGATCTCTTCTCAGAACTAAA 58.621 33.333 0.00 0.00 0.00 1.85
319 320 7.821359 CACCATTTGATCTCTTCTCAGAACTAA 59.179 37.037 0.00 0.00 0.00 2.24
320 321 7.326454 CACCATTTGATCTCTTCTCAGAACTA 58.674 38.462 0.00 0.00 0.00 2.24
321 322 6.171921 CACCATTTGATCTCTTCTCAGAACT 58.828 40.000 0.00 0.00 0.00 3.01
322 323 5.353678 CCACCATTTGATCTCTTCTCAGAAC 59.646 44.000 0.00 0.00 0.00 3.01
323 324 5.494724 CCACCATTTGATCTCTTCTCAGAA 58.505 41.667 0.00 0.00 0.00 3.02
324 325 4.624843 GCCACCATTTGATCTCTTCTCAGA 60.625 45.833 0.00 0.00 0.00 3.27
325 326 3.626670 GCCACCATTTGATCTCTTCTCAG 59.373 47.826 0.00 0.00 0.00 3.35
326 327 3.009363 TGCCACCATTTGATCTCTTCTCA 59.991 43.478 0.00 0.00 0.00 3.27
327 328 3.614092 TGCCACCATTTGATCTCTTCTC 58.386 45.455 0.00 0.00 0.00 2.87
328 329 3.009916 ACTGCCACCATTTGATCTCTTCT 59.990 43.478 0.00 0.00 0.00 2.85
329 330 3.350833 ACTGCCACCATTTGATCTCTTC 58.649 45.455 0.00 0.00 0.00 2.87
330 331 3.446442 ACTGCCACCATTTGATCTCTT 57.554 42.857 0.00 0.00 0.00 2.85
331 332 3.446442 AACTGCCACCATTTGATCTCT 57.554 42.857 0.00 0.00 0.00 3.10
332 333 5.643379 TTAAACTGCCACCATTTGATCTC 57.357 39.130 0.00 0.00 0.00 2.75
333 334 6.418057 TTTTAAACTGCCACCATTTGATCT 57.582 33.333 0.00 0.00 0.00 2.75
357 358 9.087424 GCAGTTTTTGTTAGAGAAGACAAATTT 57.913 29.630 2.92 0.00 43.08 1.82
358 359 7.706607 GGCAGTTTTTGTTAGAGAAGACAAATT 59.293 33.333 2.92 0.00 43.08 1.82
359 360 7.147915 TGGCAGTTTTTGTTAGAGAAGACAAAT 60.148 33.333 2.92 0.00 43.08 2.32
360 361 6.151985 TGGCAGTTTTTGTTAGAGAAGACAAA 59.848 34.615 0.00 0.00 42.23 2.83
361 362 5.650266 TGGCAGTTTTTGTTAGAGAAGACAA 59.350 36.000 0.00 0.00 34.22 3.18
362 363 5.065988 GTGGCAGTTTTTGTTAGAGAAGACA 59.934 40.000 0.00 0.00 0.00 3.41
363 364 5.511571 GTGGCAGTTTTTGTTAGAGAAGAC 58.488 41.667 0.00 0.00 0.00 3.01
364 365 4.272504 CGTGGCAGTTTTTGTTAGAGAAGA 59.727 41.667 0.00 0.00 0.00 2.87
365 366 4.035208 ACGTGGCAGTTTTTGTTAGAGAAG 59.965 41.667 0.00 0.00 0.00 2.85
366 367 3.942748 ACGTGGCAGTTTTTGTTAGAGAA 59.057 39.130 0.00 0.00 0.00 2.87
367 368 3.537580 ACGTGGCAGTTTTTGTTAGAGA 58.462 40.909 0.00 0.00 0.00 3.10
368 369 3.603857 CGACGTGGCAGTTTTTGTTAGAG 60.604 47.826 0.00 0.00 0.00 2.43
369 370 2.285756 CGACGTGGCAGTTTTTGTTAGA 59.714 45.455 0.00 0.00 0.00 2.10
370 371 2.635444 CGACGTGGCAGTTTTTGTTAG 58.365 47.619 0.00 0.00 0.00 2.34
371 372 1.268133 GCGACGTGGCAGTTTTTGTTA 60.268 47.619 18.28 0.00 0.00 2.41
372 373 0.524604 GCGACGTGGCAGTTTTTGTT 60.525 50.000 18.28 0.00 0.00 2.83
373 374 1.063488 GCGACGTGGCAGTTTTTGT 59.937 52.632 18.28 0.00 0.00 2.83
374 375 0.657368 GAGCGACGTGGCAGTTTTTG 60.657 55.000 24.73 0.00 34.64 2.44
375 376 0.814010 AGAGCGACGTGGCAGTTTTT 60.814 50.000 24.73 2.01 34.64 1.94
376 377 0.032952 TAGAGCGACGTGGCAGTTTT 59.967 50.000 24.73 2.82 34.64 2.43
377 378 0.032952 TTAGAGCGACGTGGCAGTTT 59.967 50.000 24.73 3.24 34.64 2.66
378 379 0.032952 TTTAGAGCGACGTGGCAGTT 59.967 50.000 24.73 11.43 34.64 3.16
379 380 0.388649 CTTTAGAGCGACGTGGCAGT 60.389 55.000 24.73 13.08 34.64 4.40
380 381 0.109272 TCTTTAGAGCGACGTGGCAG 60.109 55.000 24.73 12.46 34.64 4.85
381 382 0.388134 GTCTTTAGAGCGACGTGGCA 60.388 55.000 24.73 0.58 34.64 4.92
382 383 0.109226 AGTCTTTAGAGCGACGTGGC 60.109 55.000 15.38 15.38 35.38 5.01
383 384 1.068472 ACAGTCTTTAGAGCGACGTGG 60.068 52.381 0.00 0.00 35.38 4.94
384 385 2.243407 GACAGTCTTTAGAGCGACGTG 58.757 52.381 0.00 0.00 35.38 4.49
385 386 1.878088 TGACAGTCTTTAGAGCGACGT 59.122 47.619 1.31 0.00 35.38 4.34
386 387 2.243407 GTGACAGTCTTTAGAGCGACG 58.757 52.381 1.31 0.00 35.38 5.12
387 388 2.597520 GGTGACAGTCTTTAGAGCGAC 58.402 52.381 1.31 0.00 0.00 5.19
388 389 1.544691 GGGTGACAGTCTTTAGAGCGA 59.455 52.381 1.31 0.00 0.00 4.93
389 390 1.404315 GGGGTGACAGTCTTTAGAGCG 60.404 57.143 1.31 0.00 0.00 5.03
390 391 1.903183 AGGGGTGACAGTCTTTAGAGC 59.097 52.381 1.31 0.00 0.00 4.09
391 392 3.056465 GTGAGGGGTGACAGTCTTTAGAG 60.056 52.174 1.31 0.00 0.00 2.43
392 393 2.897969 GTGAGGGGTGACAGTCTTTAGA 59.102 50.000 1.31 0.00 0.00 2.10
393 394 2.632996 TGTGAGGGGTGACAGTCTTTAG 59.367 50.000 1.31 0.00 0.00 1.85
394 395 2.684943 TGTGAGGGGTGACAGTCTTTA 58.315 47.619 1.31 0.00 0.00 1.85
395 396 1.507140 TGTGAGGGGTGACAGTCTTT 58.493 50.000 1.31 0.00 0.00 2.52
396 397 1.507140 TTGTGAGGGGTGACAGTCTT 58.493 50.000 1.31 0.00 0.00 3.01
397 398 1.141053 GTTTGTGAGGGGTGACAGTCT 59.859 52.381 1.31 0.00 0.00 3.24
398 399 1.141053 AGTTTGTGAGGGGTGACAGTC 59.859 52.381 0.00 0.00 0.00 3.51
399 400 1.213296 AGTTTGTGAGGGGTGACAGT 58.787 50.000 0.00 0.00 0.00 3.55
400 401 3.485463 TTAGTTTGTGAGGGGTGACAG 57.515 47.619 0.00 0.00 0.00 3.51
401 402 3.935818 TTTAGTTTGTGAGGGGTGACA 57.064 42.857 0.00 0.00 0.00 3.58
402 403 5.300792 TCATTTTTAGTTTGTGAGGGGTGAC 59.699 40.000 0.00 0.00 0.00 3.67
403 404 5.300792 GTCATTTTTAGTTTGTGAGGGGTGA 59.699 40.000 0.00 0.00 0.00 4.02
404 405 5.068460 TGTCATTTTTAGTTTGTGAGGGGTG 59.932 40.000 0.00 0.00 0.00 4.61
405 406 5.205056 TGTCATTTTTAGTTTGTGAGGGGT 58.795 37.500 0.00 0.00 0.00 4.95
406 407 5.301805 ACTGTCATTTTTAGTTTGTGAGGGG 59.698 40.000 0.00 0.00 0.00 4.79
407 408 6.039270 TCACTGTCATTTTTAGTTTGTGAGGG 59.961 38.462 0.00 0.00 0.00 4.30
408 409 7.026631 TCACTGTCATTTTTAGTTTGTGAGG 57.973 36.000 0.00 0.00 0.00 3.86
409 410 8.909708 TTTCACTGTCATTTTTAGTTTGTGAG 57.090 30.769 0.00 0.00 34.20 3.51
410 411 9.515020 GATTTCACTGTCATTTTTAGTTTGTGA 57.485 29.630 0.00 0.00 0.00 3.58
411 412 9.299963 TGATTTCACTGTCATTTTTAGTTTGTG 57.700 29.630 0.00 0.00 0.00 3.33
415 416 9.398170 CGAATGATTTCACTGTCATTTTTAGTT 57.602 29.630 2.55 0.00 43.16 2.24
416 417 7.538678 GCGAATGATTTCACTGTCATTTTTAGT 59.461 33.333 2.55 0.00 43.16 2.24
417 418 7.538334 TGCGAATGATTTCACTGTCATTTTTAG 59.462 33.333 2.55 0.00 43.16 1.85
418 419 7.366513 TGCGAATGATTTCACTGTCATTTTTA 58.633 30.769 2.55 0.00 43.16 1.52
419 420 6.215121 TGCGAATGATTTCACTGTCATTTTT 58.785 32.000 2.55 0.00 43.16 1.94
420 421 5.771469 TGCGAATGATTTCACTGTCATTTT 58.229 33.333 2.55 0.00 43.16 1.82
421 422 5.375417 TGCGAATGATTTCACTGTCATTT 57.625 34.783 2.55 0.00 43.16 2.32
422 423 5.048504 ACTTGCGAATGATTTCACTGTCATT 60.049 36.000 0.63 0.63 45.12 2.57
423 424 4.456911 ACTTGCGAATGATTTCACTGTCAT 59.543 37.500 0.00 0.00 36.67 3.06
424 425 3.814842 ACTTGCGAATGATTTCACTGTCA 59.185 39.130 0.00 0.00 0.00 3.58
425 426 4.083855 TCACTTGCGAATGATTTCACTGTC 60.084 41.667 0.00 0.00 0.00 3.51
426 427 3.814842 TCACTTGCGAATGATTTCACTGT 59.185 39.130 0.00 0.00 0.00 3.55
427 428 4.408993 TCACTTGCGAATGATTTCACTG 57.591 40.909 0.00 0.00 0.00 3.66
428 429 4.275689 TGTTCACTTGCGAATGATTTCACT 59.724 37.500 0.00 0.00 0.00 3.41
429 430 4.536065 TGTTCACTTGCGAATGATTTCAC 58.464 39.130 0.00 0.00 0.00 3.18
430 431 4.827304 TGTTCACTTGCGAATGATTTCA 57.173 36.364 0.00 0.00 0.00 2.69
431 432 5.002840 CGAATGTTCACTTGCGAATGATTTC 59.997 40.000 0.00 0.00 0.00 2.17
432 433 4.853196 CGAATGTTCACTTGCGAATGATTT 59.147 37.500 0.00 0.00 0.00 2.17
433 434 4.406069 CGAATGTTCACTTGCGAATGATT 58.594 39.130 0.00 0.00 0.00 2.57
434 435 3.728864 GCGAATGTTCACTTGCGAATGAT 60.729 43.478 0.00 0.00 0.00 2.45
435 436 2.412716 GCGAATGTTCACTTGCGAATGA 60.413 45.455 0.00 0.00 0.00 2.57
436 437 1.906966 GCGAATGTTCACTTGCGAATG 59.093 47.619 0.00 0.00 0.00 2.67
437 438 1.806542 AGCGAATGTTCACTTGCGAAT 59.193 42.857 0.00 0.00 0.00 3.34
438 439 1.225855 AGCGAATGTTCACTTGCGAA 58.774 45.000 0.00 0.00 0.00 4.70
439 440 1.992667 CTAGCGAATGTTCACTTGCGA 59.007 47.619 0.00 0.00 0.00 5.10
440 441 1.527793 GCTAGCGAATGTTCACTTGCG 60.528 52.381 0.00 0.00 30.98 4.85
441 442 1.734465 AGCTAGCGAATGTTCACTTGC 59.266 47.619 9.55 8.47 38.02 4.01
442 443 4.033358 CCTTAGCTAGCGAATGTTCACTTG 59.967 45.833 10.87 0.00 0.00 3.16
443 444 4.184629 CCTTAGCTAGCGAATGTTCACTT 58.815 43.478 10.87 0.00 0.00 3.16
444 445 3.430929 CCCTTAGCTAGCGAATGTTCACT 60.431 47.826 10.87 0.00 0.00 3.41
445 446 2.866762 CCCTTAGCTAGCGAATGTTCAC 59.133 50.000 10.87 0.00 0.00 3.18
446 447 2.741878 GCCCTTAGCTAGCGAATGTTCA 60.742 50.000 10.87 0.00 38.99 3.18
447 448 1.867865 GCCCTTAGCTAGCGAATGTTC 59.132 52.381 10.87 0.00 38.99 3.18
448 449 1.475213 GGCCCTTAGCTAGCGAATGTT 60.475 52.381 10.87 0.00 43.05 2.71
449 450 0.106894 GGCCCTTAGCTAGCGAATGT 59.893 55.000 10.87 0.00 43.05 2.71
450 451 0.106708 TGGCCCTTAGCTAGCGAATG 59.893 55.000 10.87 8.19 43.05 2.67
451 452 0.394565 CTGGCCCTTAGCTAGCGAAT 59.605 55.000 10.87 0.00 43.76 3.34
452 453 1.823295 CTGGCCCTTAGCTAGCGAA 59.177 57.895 9.55 9.81 43.76 4.70
453 454 3.538614 CTGGCCCTTAGCTAGCGA 58.461 61.111 9.55 0.00 43.76 4.93
457 458 6.262273 CGAAATTTTAATCTGGCCCTTAGCTA 59.738 38.462 0.00 0.00 43.05 3.32
458 459 5.067805 CGAAATTTTAATCTGGCCCTTAGCT 59.932 40.000 0.00 0.00 43.05 3.32
459 460 5.281727 CGAAATTTTAATCTGGCCCTTAGC 58.718 41.667 0.00 0.00 42.60 3.09
460 461 5.281727 GCGAAATTTTAATCTGGCCCTTAG 58.718 41.667 0.00 0.00 0.00 2.18
461 462 4.098807 GGCGAAATTTTAATCTGGCCCTTA 59.901 41.667 0.00 0.00 33.29 2.69
462 463 3.118775 GGCGAAATTTTAATCTGGCCCTT 60.119 43.478 0.00 0.00 33.29 3.95
463 464 2.430694 GGCGAAATTTTAATCTGGCCCT 59.569 45.455 0.00 0.00 33.29 5.19
467 468 4.329801 GCCAAAGGCGAAATTTTAATCTGG 59.670 41.667 0.00 0.00 39.62 3.86
486 487 0.323360 CCGGAGATTTTGGAGGCCAA 60.323 55.000 5.01 0.00 42.29 4.52
487 488 1.204786 TCCGGAGATTTTGGAGGCCA 61.205 55.000 5.01 0.00 0.00 5.36
489 490 0.748367 GGTCCGGAGATTTTGGAGGC 60.748 60.000 3.06 0.00 31.04 4.70
490 491 0.462047 CGGTCCGGAGATTTTGGAGG 60.462 60.000 3.06 0.00 31.04 4.30
503 504 0.171903 ACGAGATACAAACCGGTCCG 59.828 55.000 8.04 3.60 0.00 4.79
507 508 2.132762 GCCATACGAGATACAAACCGG 58.867 52.381 0.00 0.00 0.00 5.28
532 534 4.838152 CCATGACGTCCGGGCCTG 62.838 72.222 14.12 3.88 0.00 4.85
534 536 2.886730 ATTTCCATGACGTCCGGGCC 62.887 60.000 14.12 0.00 0.00 5.80
538 540 0.098728 GCCAATTTCCATGACGTCCG 59.901 55.000 14.12 3.93 0.00 4.79
541 543 1.851304 ATGGCCAATTTCCATGACGT 58.149 45.000 10.96 0.00 42.39 4.34
549 551 6.557291 TTTCATCACAAAATGGCCAATTTC 57.443 33.333 16.07 0.00 37.51 2.17
550 552 7.527568 AATTTCATCACAAAATGGCCAATTT 57.472 28.000 10.96 12.29 40.32 1.82
552 554 7.230913 TCAAAATTTCATCACAAAATGGCCAAT 59.769 29.630 10.96 0.00 0.00 3.16
592 594 6.183360 TGGCACTTTTCTAAAACTTTGGCATA 60.183 34.615 9.85 0.00 32.49 3.14
593 595 5.056480 GGCACTTTTCTAAAACTTTGGCAT 58.944 37.500 0.00 0.00 0.00 4.40
594 596 4.081420 TGGCACTTTTCTAAAACTTTGGCA 60.081 37.500 9.85 9.85 33.78 4.92
597 599 5.660460 ACCTGGCACTTTTCTAAAACTTTG 58.340 37.500 0.00 0.00 0.00 2.77
603 605 7.589958 TTGATAAACCTGGCACTTTTCTAAA 57.410 32.000 0.00 0.00 0.00 1.85
623 626 1.210967 TCCCTACCCGCGAAAATTGAT 59.789 47.619 8.23 0.00 0.00 2.57
651 654 5.122396 CGTGTTTATCTTCTTTTCCTCCTGG 59.878 44.000 0.00 0.00 0.00 4.45
812 841 4.333095 CGGAGCATCGACATGGAG 57.667 61.111 0.00 0.00 34.37 3.86
831 868 0.524862 CGCGACCCGGCTTATATACT 59.475 55.000 0.00 0.00 0.00 2.12
876 914 1.300697 GCTTGCTTGCTTGCTTGCT 60.301 52.632 10.35 0.00 0.00 3.91
877 915 1.155424 TTGCTTGCTTGCTTGCTTGC 61.155 50.000 10.35 7.41 34.50 4.01
878 916 1.260561 CTTTGCTTGCTTGCTTGCTTG 59.739 47.619 10.35 0.00 0.00 4.01
879 917 1.578583 CTTTGCTTGCTTGCTTGCTT 58.421 45.000 10.35 0.00 0.00 3.91
904 968 7.022979 TGTATTGAGTTTGCTTCAATCAATCG 58.977 34.615 10.06 0.00 35.79 3.34
921 986 1.059369 GCACGCACGCTGTATTGAG 59.941 57.895 0.00 0.00 0.00 3.02
925 990 0.948623 TTCTTGCACGCACGCTGTAT 60.949 50.000 0.00 0.00 0.00 2.29
926 991 1.154814 TTTCTTGCACGCACGCTGTA 61.155 50.000 0.00 0.00 0.00 2.74
927 992 2.378945 CTTTCTTGCACGCACGCTGT 62.379 55.000 0.00 0.00 0.00 4.40
928 993 1.723542 CTTTCTTGCACGCACGCTG 60.724 57.895 0.00 0.00 0.00 5.18
992 1081 2.101582 AGCACCTTGTCCATACTCGATC 59.898 50.000 0.00 0.00 0.00 3.69
1063 1179 4.475135 GGAGAACCGAGCCCAGCC 62.475 72.222 0.00 0.00 0.00 4.85
1265 1411 2.854214 GCAGCTCGTGATTCGCTCG 61.854 63.158 0.00 0.00 39.67 5.03
1314 1477 5.391310 CGGTGATCAGACCAAGAAAGAATTG 60.391 44.000 0.00 0.00 35.50 2.32
1359 1528 3.135712 TCAGAAGCAGGAGTTAACAACCA 59.864 43.478 19.11 0.00 0.00 3.67
1360 1529 3.498777 GTCAGAAGCAGGAGTTAACAACC 59.501 47.826 8.61 10.68 0.00 3.77
1398 1571 7.042389 GGTTTCTTTCTTTCTCTGTACTCTGTG 60.042 40.741 0.00 0.00 0.00 3.66
1404 1583 7.511959 AATGGGTTTCTTTCTTTCTCTGTAC 57.488 36.000 0.00 0.00 0.00 2.90
1412 1591 3.552068 CGGCGAAATGGGTTTCTTTCTTT 60.552 43.478 0.00 0.00 41.24 2.52
1413 1592 2.030274 CGGCGAAATGGGTTTCTTTCTT 60.030 45.455 0.00 0.00 41.24 2.52
1454 1638 6.746104 AAACAAAAACAAAAACAAAGCAGC 57.254 29.167 0.00 0.00 0.00 5.25
1455 1639 8.054819 CCAAAAACAAAAACAAAAACAAAGCAG 58.945 29.630 0.00 0.00 0.00 4.24
1456 1640 7.545615 ACCAAAAACAAAAACAAAAACAAAGCA 59.454 25.926 0.00 0.00 0.00 3.91
1457 1641 7.899974 ACCAAAAACAAAAACAAAAACAAAGC 58.100 26.923 0.00 0.00 0.00 3.51
1464 1648 9.031360 GCCTTAAAACCAAAAACAAAAACAAAA 57.969 25.926 0.00 0.00 0.00 2.44
1465 1649 8.414003 AGCCTTAAAACCAAAAACAAAAACAAA 58.586 25.926 0.00 0.00 0.00 2.83
1466 1650 7.941919 AGCCTTAAAACCAAAAACAAAAACAA 58.058 26.923 0.00 0.00 0.00 2.83
1467 1651 7.511959 AGCCTTAAAACCAAAAACAAAAACA 57.488 28.000 0.00 0.00 0.00 2.83
1468 1652 8.937884 TCTAGCCTTAAAACCAAAAACAAAAAC 58.062 29.630 0.00 0.00 0.00 2.43
1469 1653 9.157104 CTCTAGCCTTAAAACCAAAAACAAAAA 57.843 29.630 0.00 0.00 0.00 1.94
1470 1654 8.532819 TCTCTAGCCTTAAAACCAAAAACAAAA 58.467 29.630 0.00 0.00 0.00 2.44
1471 1655 7.977293 GTCTCTAGCCTTAAAACCAAAAACAAA 59.023 33.333 0.00 0.00 0.00 2.83
1472 1656 7.485810 GTCTCTAGCCTTAAAACCAAAAACAA 58.514 34.615 0.00 0.00 0.00 2.83
1473 1657 6.238538 CGTCTCTAGCCTTAAAACCAAAAACA 60.239 38.462 0.00 0.00 0.00 2.83
1474 1658 6.140786 CGTCTCTAGCCTTAAAACCAAAAAC 58.859 40.000 0.00 0.00 0.00 2.43
1475 1659 5.824097 ACGTCTCTAGCCTTAAAACCAAAAA 59.176 36.000 0.00 0.00 0.00 1.94
1476 1660 5.370679 ACGTCTCTAGCCTTAAAACCAAAA 58.629 37.500 0.00 0.00 0.00 2.44
1477 1661 4.964593 ACGTCTCTAGCCTTAAAACCAAA 58.035 39.130 0.00 0.00 0.00 3.28
1478 1662 4.039488 TGACGTCTCTAGCCTTAAAACCAA 59.961 41.667 17.92 0.00 0.00 3.67
1479 1663 3.575256 TGACGTCTCTAGCCTTAAAACCA 59.425 43.478 17.92 0.00 0.00 3.67
1480 1664 4.184079 TGACGTCTCTAGCCTTAAAACC 57.816 45.455 17.92 0.00 0.00 3.27
1481 1665 5.288952 GTCATGACGTCTCTAGCCTTAAAAC 59.711 44.000 17.92 0.00 0.00 2.43
1518 1705 6.149474 ACCACTTTTCGGATTATTTGACTGAG 59.851 38.462 0.00 0.00 0.00 3.35
1521 1708 5.183140 CCACCACTTTTCGGATTATTTGACT 59.817 40.000 0.00 0.00 0.00 3.41
1525 1712 5.048294 GTGTCCACCACTTTTCGGATTATTT 60.048 40.000 0.00 0.00 41.11 1.40
1528 1715 3.404899 GTGTCCACCACTTTTCGGATTA 58.595 45.455 0.00 0.00 41.11 1.75
1540 1749 1.112950 TAGTTCACACGTGTCCACCA 58.887 50.000 20.49 4.43 0.00 4.17
1556 1765 1.346722 GGTGGTGTAGCAGGTTGTAGT 59.653 52.381 0.00 0.00 0.00 2.73
1562 1771 1.349542 TGTTGGGTGGTGTAGCAGGT 61.350 55.000 0.00 0.00 0.00 4.00
1580 1818 3.268603 TGACGCGTGTGCTGGTTG 61.269 61.111 20.70 0.00 39.65 3.77
1592 1830 1.805945 CAAGCCCTCTACGTGACGC 60.806 63.158 4.25 0.00 0.00 5.19
1601 1841 1.127567 TGTACCACAGCAAGCCCTCT 61.128 55.000 0.00 0.00 0.00 3.69
1610 1850 3.972227 CTGCAGGTGTACCACAGC 58.028 61.111 5.57 8.18 46.20 4.40
1611 1851 0.671781 GAGCTGCAGGTGTACCACAG 60.672 60.000 25.60 15.73 42.17 3.66
1659 1902 4.160736 AGTTTTTCGTGAGGCTATTTGC 57.839 40.909 0.00 0.00 41.94 3.68
1660 1903 6.314784 CCTAAGTTTTTCGTGAGGCTATTTG 58.685 40.000 0.00 0.00 0.00 2.32
1665 1908 2.779506 CCCTAAGTTTTTCGTGAGGCT 58.220 47.619 0.00 0.00 0.00 4.58
1675 1918 5.010314 CCTAAGTTTTTCCGCCCTAAGTTTT 59.990 40.000 0.00 0.00 0.00 2.43
1677 1920 4.077108 CCTAAGTTTTTCCGCCCTAAGTT 58.923 43.478 0.00 0.00 0.00 2.66
1678 1921 3.560668 CCCTAAGTTTTTCCGCCCTAAGT 60.561 47.826 0.00 0.00 0.00 2.24
1680 1923 2.880990 GCCCTAAGTTTTTCCGCCCTAA 60.881 50.000 0.00 0.00 0.00 2.69
1681 1924 1.340308 GCCCTAAGTTTTTCCGCCCTA 60.340 52.381 0.00 0.00 0.00 3.53
1684 1927 1.504900 CGCCCTAAGTTTTTCCGCC 59.495 57.895 0.00 0.00 0.00 6.13
1685 1928 0.956902 TCCGCCCTAAGTTTTTCCGC 60.957 55.000 0.00 0.00 0.00 5.54
1686 1929 1.525941 TTCCGCCCTAAGTTTTTCCG 58.474 50.000 0.00 0.00 0.00 4.30
1688 1931 4.392754 TCGTATTTCCGCCCTAAGTTTTTC 59.607 41.667 0.00 0.00 0.00 2.29
1705 2367 4.070009 GGGGTTGACAAGAAAGTCGTATT 58.930 43.478 0.00 0.00 41.41 1.89
1710 2372 3.819337 GGTTAGGGGTTGACAAGAAAGTC 59.181 47.826 0.00 0.00 38.99 3.01
1713 2375 5.370289 TCTTAGGTTAGGGGTTGACAAGAAA 59.630 40.000 0.00 0.00 0.00 2.52
1722 2384 2.917205 AGCTGTCTTAGGTTAGGGGTT 58.083 47.619 0.00 0.00 31.87 4.11
1733 2395 4.367039 AAAGTTTGCCCTAGCTGTCTTA 57.633 40.909 0.00 0.00 40.80 2.10
1739 2401 2.376855 AGGAGAAAAGTTTGCCCTAGCT 59.623 45.455 2.59 0.00 40.80 3.32
1741 2403 4.006319 CTGAGGAGAAAAGTTTGCCCTAG 58.994 47.826 4.15 0.00 0.00 3.02
1744 2406 2.554462 GTCTGAGGAGAAAAGTTTGCCC 59.446 50.000 0.00 0.00 0.00 5.36
1758 2420 2.202797 CGCCGGTGATGTCTGAGG 60.203 66.667 10.20 0.00 0.00 3.86
1774 2436 2.558554 AAGGCGAATCCACGGACTCG 62.559 60.000 12.35 12.35 45.11 4.18
1777 2439 1.814169 GGAAGGCGAATCCACGGAC 60.814 63.158 0.00 0.00 36.92 4.79
1778 2440 2.582436 GGAAGGCGAATCCACGGA 59.418 61.111 0.00 0.00 36.92 4.69
1784 2446 1.594564 GGTAGCGGGAAGGCGAATC 60.595 63.158 0.00 0.00 38.18 2.52
1797 2459 1.805945 CGTCGGAGTTGCAGGTAGC 60.806 63.158 0.00 0.00 45.96 3.58
1800 2462 4.681978 GCCGTCGGAGTTGCAGGT 62.682 66.667 17.49 0.00 0.00 4.00
1820 2482 3.716204 GAATTCCCCTCCCCGCCAC 62.716 68.421 0.00 0.00 0.00 5.01
1821 2483 3.416880 GAATTCCCCTCCCCGCCA 61.417 66.667 0.00 0.00 0.00 5.69
1822 2484 3.097162 AGAATTCCCCTCCCCGCC 61.097 66.667 0.65 0.00 0.00 6.13
1823 2485 2.193248 CAGAATTCCCCTCCCCGC 59.807 66.667 0.65 0.00 0.00 6.13
1824 2486 2.001269 ACCAGAATTCCCCTCCCCG 61.001 63.158 0.65 0.00 0.00 5.73
1825 2487 1.615262 CACCAGAATTCCCCTCCCC 59.385 63.158 0.65 0.00 0.00 4.81
1826 2488 1.076705 GCACCAGAATTCCCCTCCC 60.077 63.158 0.65 0.00 0.00 4.30
1827 2489 1.076705 GGCACCAGAATTCCCCTCC 60.077 63.158 0.65 0.00 0.00 4.30
1828 2490 0.681243 GTGGCACCAGAATTCCCCTC 60.681 60.000 6.29 0.00 0.00 4.30
1829 2491 1.384191 GTGGCACCAGAATTCCCCT 59.616 57.895 6.29 0.00 0.00 4.79
1830 2492 1.682344 GGTGGCACCAGAATTCCCC 60.682 63.158 31.26 0.00 38.42 4.81
1831 2493 2.046285 CGGTGGCACCAGAATTCCC 61.046 63.158 34.11 6.19 38.47 3.97
1832 2494 2.700773 GCGGTGGCACCAGAATTCC 61.701 63.158 34.11 6.96 38.47 3.01
1833 2495 2.700773 GGCGGTGGCACCAGAATTC 61.701 63.158 34.11 15.55 38.47 2.17
1834 2496 2.676471 GGCGGTGGCACCAGAATT 60.676 61.111 34.11 0.00 38.47 2.17
1835 2497 3.628646 GAGGCGGTGGCACCAGAAT 62.629 63.158 34.11 17.81 38.47 2.40
1836 2498 4.329545 GAGGCGGTGGCACCAGAA 62.330 66.667 34.11 0.00 38.47 3.02
1848 2510 8.746922 TGTAATATAAACTAATAACCGAGGCG 57.253 34.615 0.00 0.00 0.00 5.52
1849 2511 9.702494 ACTGTAATATAAACTAATAACCGAGGC 57.298 33.333 0.00 0.00 0.00 4.70
1867 2529 7.827236 ACCTGCAAGCACTAATAAACTGTAATA 59.173 33.333 0.00 0.00 0.00 0.98
1872 2534 4.726416 CACCTGCAAGCACTAATAAACTG 58.274 43.478 0.00 0.00 0.00 3.16
1873 2535 3.191371 GCACCTGCAAGCACTAATAAACT 59.809 43.478 0.00 0.00 41.59 2.66
1878 2540 1.308069 CCGCACCTGCAAGCACTAAT 61.308 55.000 6.31 0.00 42.21 1.73
1879 2541 1.965930 CCGCACCTGCAAGCACTAA 60.966 57.895 6.31 0.00 42.21 2.24
1885 2547 3.730761 GAGTGCCGCACCTGCAAG 61.731 66.667 19.96 0.00 41.06 4.01
1903 2565 1.047801 AAAAACACCACCATCTGCCC 58.952 50.000 0.00 0.00 0.00 5.36
1921 2583 3.191669 TCGAAAGACAAACTCGCAGAAA 58.808 40.909 0.00 0.00 30.91 2.52
1926 2588 1.140816 AGCTCGAAAGACAAACTCGC 58.859 50.000 0.00 0.00 35.39 5.03
1935 2597 1.065418 GGGGGATCAAAGCTCGAAAGA 60.065 52.381 0.00 0.00 39.12 2.52
1939 2601 1.676678 CGAGGGGGATCAAAGCTCGA 61.677 60.000 0.00 0.00 35.23 4.04
1947 2609 1.000019 ACGAACTCGAGGGGGATCA 60.000 57.895 18.41 0.00 43.02 2.92
1949 2611 1.757340 GGACGAACTCGAGGGGGAT 60.757 63.158 18.41 0.00 43.02 3.85
1966 2628 3.581755 TCCATCGACTACTTTCAAACGG 58.418 45.455 0.00 0.00 0.00 4.44
1967 2629 4.235360 ACTCCATCGACTACTTTCAAACG 58.765 43.478 0.00 0.00 0.00 3.60
1973 2635 3.846360 CCGAAACTCCATCGACTACTTT 58.154 45.455 0.00 0.00 42.76 2.66
1978 2640 0.537188 ATGCCGAAACTCCATCGACT 59.463 50.000 0.00 0.00 42.76 4.18
1984 2646 4.191544 CAAGAATCTATGCCGAAACTCCA 58.808 43.478 0.00 0.00 0.00 3.86
1989 2651 7.624360 AACATAACAAGAATCTATGCCGAAA 57.376 32.000 0.00 0.00 0.00 3.46
1996 2658 8.993121 CGCCTCAATAACATAACAAGAATCTAT 58.007 33.333 0.00 0.00 0.00 1.98
2004 2666 7.051623 ACCTTATCGCCTCAATAACATAACAA 58.948 34.615 0.00 0.00 0.00 2.83
2005 2667 6.588204 ACCTTATCGCCTCAATAACATAACA 58.412 36.000 0.00 0.00 0.00 2.41
2009 2671 6.231211 CCTAACCTTATCGCCTCAATAACAT 58.769 40.000 0.00 0.00 0.00 2.71
2010 2672 5.454187 CCCTAACCTTATCGCCTCAATAACA 60.454 44.000 0.00 0.00 0.00 2.41
2011 2673 4.995487 CCCTAACCTTATCGCCTCAATAAC 59.005 45.833 0.00 0.00 0.00 1.89
2013 2675 4.228824 ACCCTAACCTTATCGCCTCAATA 58.771 43.478 0.00 0.00 0.00 1.90
2014 2676 3.046374 ACCCTAACCTTATCGCCTCAAT 58.954 45.455 0.00 0.00 0.00 2.57
2018 2680 2.574824 ACAAACCCTAACCTTATCGCCT 59.425 45.455 0.00 0.00 0.00 5.52
2021 2683 4.565564 CGAAGACAAACCCTAACCTTATCG 59.434 45.833 0.00 0.00 0.00 2.92
2024 2686 4.101430 ACACGAAGACAAACCCTAACCTTA 59.899 41.667 0.00 0.00 0.00 2.69
2025 2687 3.118149 ACACGAAGACAAACCCTAACCTT 60.118 43.478 0.00 0.00 0.00 3.50
2035 2697 3.864243 ACACCAAGTACACGAAGACAAA 58.136 40.909 0.00 0.00 0.00 2.83
2038 2700 3.088194 TGACACCAAGTACACGAAGAC 57.912 47.619 0.00 0.00 0.00 3.01
2059 2727 2.674177 CGTCGCCTGGATCTAAAACACT 60.674 50.000 0.00 0.00 0.00 3.55
2063 2731 1.822990 AGTCGTCGCCTGGATCTAAAA 59.177 47.619 0.00 0.00 0.00 1.52
2079 2761 3.753434 ACTCTGGAGCCGCAGTCG 61.753 66.667 0.00 0.00 0.00 4.18
2082 2764 0.459237 CTAACACTCTGGAGCCGCAG 60.459 60.000 0.00 0.00 0.00 5.18
2085 2767 1.546476 AGAACTAACACTCTGGAGCCG 59.454 52.381 0.00 0.00 0.00 5.52
2087 2769 4.463186 TCCTAAGAACTAACACTCTGGAGC 59.537 45.833 0.00 0.00 0.00 4.70
2090 2772 5.017490 TCCTCCTAAGAACTAACACTCTGG 58.983 45.833 0.00 0.00 0.00 3.86
2093 2775 4.458642 ACGTCCTCCTAAGAACTAACACTC 59.541 45.833 0.00 0.00 0.00 3.51
2094 2776 4.217983 CACGTCCTCCTAAGAACTAACACT 59.782 45.833 0.00 0.00 0.00 3.55
2095 2777 4.483311 CACGTCCTCCTAAGAACTAACAC 58.517 47.826 0.00 0.00 0.00 3.32
2100 2782 1.272769 GTGCACGTCCTCCTAAGAACT 59.727 52.381 0.00 0.00 0.00 3.01
2110 2792 2.038387 AAAGTCTTTGTGCACGTCCT 57.962 45.000 13.13 0.36 0.00 3.85
2111 2793 2.354821 AGAAAAGTCTTTGTGCACGTCC 59.645 45.455 13.13 0.00 0.00 4.79
2112 2794 3.675467 AGAAAAGTCTTTGTGCACGTC 57.325 42.857 13.13 0.57 0.00 4.34
2113 2795 4.034048 CAGTAGAAAAGTCTTTGTGCACGT 59.966 41.667 13.13 0.00 35.12 4.49
2115 2797 5.064707 TGACAGTAGAAAAGTCTTTGTGCAC 59.935 40.000 10.75 10.75 33.22 4.57
2130 2812 9.653287 CAGTTTGACCTTATTTATGACAGTAGA 57.347 33.333 0.00 0.00 0.00 2.59
2132 2814 7.335924 GCCAGTTTGACCTTATTTATGACAGTA 59.664 37.037 0.00 0.00 0.00 2.74
2133 2815 6.151144 GCCAGTTTGACCTTATTTATGACAGT 59.849 38.462 0.00 0.00 0.00 3.55
2141 2823 3.081804 CGGAGCCAGTTTGACCTTATTT 58.918 45.455 0.00 0.00 0.00 1.40
2144 2826 1.344065 TCGGAGCCAGTTTGACCTTA 58.656 50.000 0.00 0.00 0.00 2.69
2158 2840 1.929836 GCTGTTGTTGCTCTATCGGAG 59.070 52.381 0.00 0.00 44.49 4.63
2170 2852 3.305623 CGACACGTCGCTGTTGTT 58.694 55.556 6.65 0.00 46.50 2.83
2181 2863 0.041312 CAGAAAAACCTGCCGACACG 60.041 55.000 0.00 0.00 0.00 4.49
2182 2864 1.002792 GTCAGAAAAACCTGCCGACAC 60.003 52.381 0.00 0.00 34.28 3.67
2183 2865 1.134220 AGTCAGAAAAACCTGCCGACA 60.134 47.619 0.00 0.00 34.28 4.35
2184 2866 1.264288 CAGTCAGAAAAACCTGCCGAC 59.736 52.381 0.00 0.00 34.28 4.79
2186 2868 1.308998 ACAGTCAGAAAAACCTGCCG 58.691 50.000 0.00 0.00 34.28 5.69
2190 2872 7.308469 CGACTACTACTACAGTCAGAAAAACCT 60.308 40.741 2.98 0.00 41.04 3.50
2191 2873 6.800892 CGACTACTACTACAGTCAGAAAAACC 59.199 42.308 2.98 0.00 41.04 3.27
2192 2874 7.358830 ACGACTACTACTACAGTCAGAAAAAC 58.641 38.462 0.00 0.00 41.04 2.43
2193 2875 7.502120 ACGACTACTACTACAGTCAGAAAAA 57.498 36.000 0.00 0.00 41.04 1.94
2194 2876 7.227314 TGAACGACTACTACTACAGTCAGAAAA 59.773 37.037 0.00 0.00 41.04 2.29
2205 2887 5.157940 AGACCACTGAACGACTACTACTA 57.842 43.478 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.