>input_sequence_85698
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACATCGCCCCCGACGCCG---------------------------GCTGGGCTCGGTTCTCCT---
---GGCAGGGGAGGAAGCTGCGG------------GAC---GACGGCCAGGCCAGAGCAGGGCAAGAGGGGAAGCAGGGC
GGTCCGCCGGCGGGGGCGGAGCAGCAGCCGGACAAGGGGAAATCGC---------CGGCGTTGCGGCCGCGGTTTGCGCC
GGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGTGCCACTGA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr1A_1_TraesCS1A01G381400
AGCCATGCTTATTGGATAAGGTTAGGACCATGGGCTATTTTTTAAAACTCCCGCTGCAACGCACGCGCATGTTTGCTATG
CTATAAAAAACACTAATCTGCTTAACCTTATTATCGATGTTTATTAAAATTGGATATATAAAATGGTGCATAATGGAAAA
TGAAGCCGGTTGTGTCCCTTTTTTGCCCGGTGCAACGCACGGGCATTTGTGCTAGTAGTAATAATATTGATCAGTATTCT
AGTGTTATATTAACAGAAATCCTATCTAGCAATCGTTCGCTGGGAGAGGGGTGACAAACGAACTTTTTTTATGGCAGTTT
TAGTTCTGAGAAGAGATCAAATGGTGGCAGTTTAAAAAAATTTGTCTTCTCTAACAAAAACTGCCACGTCGCTCTAAAGA
CTGTCACCCCTCACAAACTAAAAATGACAGTGAAATCATTCGCAAGTGAACATTCGCTAGCTAAGGGCCAGATTAAAATT
TCGCCTTTGGCCTCCAAAATCTCCGGACC-GGTTTGTATCTCGTATGGCGCCCCAGGCCCGGACGTCATGGAAATTGGCC
ATTTTGTGATGAAATTTTGAATTAGATTCATTTTATGCCAAAGTTTTAGAAAAGT-GCCAGGTTTATCAATTTTCGCGGG
TAGGGAAAGCAGCCCAGGAGGAAAAGAAGATAAACACGCGCGAAAGCCCGAAACCGCGAGACGGTTG----CAACCTCCA
CGACGCCACCGCGTGCGTCACGA-----------GGCTCTCCCTCGCGGCCGCGTCCACGAATATTCTGGACTCCTCCAG
CGCT-----TGAAACCGCCATGACCAAAACTT------TCCTCCAT-GTCG---AT----GCTCCGCAGTATATAAGCCG
GGTCGCGTCCCC-TCTCTCCTTTCACCAACCCAAGCAAGCAAGCAAGC--------------------------AAGCAA
AGGCAATCGATTGA-TTGAAGCAAACTCAATAC-------AGCGTGCGTGCAAGAAAGCATCGGCCACCGGAGCAGCTGC
A--------GGAA--------TCATCCCCGTCTCCAA-CCGATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACATCGCCCCCGAC------------------GC---------CGGCTGGGCTCGGTTCTCCT---
---GGCAGGGGAGGAAGCTGCGG------------GAC---GACGGCCAGGCCAGAGCAGGGCAAGAGGGGAAGCAGGGC
GGTCCGCCGGCGGGGGCGGAGCAGCAGCCGGACAAGGGGAAATCGC---------CGGCGTTGCGGCCGCGGTTTGCGCC
GGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGTGCCACTGATGAGCGAGCG------A---ATCA------CGAG
CTGCTCGTGGTCTGGCCGCGC--GCGTGTGTGAGACCA----ATTCTTTCTTGGTCTGAT--CACCGTATGATCGGCGTG
TTCATTTTGGTTG-TTAACTC--C-TGCTTCTGACTGAAGCCGCGTGTTGCAC------AGAGTACAGAGAA-----AGA
AAGAAACCCATTTCGCCGTGATTATTTGGATAAGCTTGCTGCTTTGTTTTTGTTTTTGTTTTTGGTTTTAAGGCTA---G
AGACGTCATGACGGAGCAGAGATGCTCAGTCAAAT----------------------AATCCGAAAAGTGGTGGACACGT
GTGAACTACAAC-----------------------------CTGCTACACCACCCAACAACCAGCACACG--CGTCACGT
AGAGGGCTTGC---TGTGGTACACCTGCAGCTCGGCCCCGCATGGCAGTGAGTTCAAAGCGGCAAATAGCCTCACGAAAA
ACTTAGGGCGG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAAAACTTAGGGCGGAAATACGACTTTCTTGTCAACCCCTAACCTAAGAC
AGCTAGGGCAAACTTTTCTCCTCAGACATCACCGGCGAGTCCGTGGATTCGCCTTCCCGCTACCTGCAACTCCGACGGCC
GGTGGCGGGGAGGGGAATTCTGGTGCCACCGCCTCGGTTATTAGTTTATATTACAGTTTATTAGTGCTTGCAGGTGCGGC
ACTCGGGCAGATGGTGGTGTTTTTTCTGCGAGTTTGTCTTTCGAGCTTTGATCCCCCTCGAGTTCGTCCGTTTGAAAGTA
GTCGATGGAGTTTCGGCATAGATTCTTGTTATGTTATTGAGGCGATAAGGTTAGGGTTTGTCTTCGTGT------ACTTG
GTGTCAAGTGTTTTAGATCCA--------------GGCGACGACTGCGGCTCCAGAGTGTTAGTTCTTAGGAGGACGTGC
ACAAAGACTTTTCTACTGTCATAAATAAGGTCAAACTGGCTCCGATAGAGCAACAACAGCGACGTGTCGGCAGGTTTTTC
TGACTGTAGTAGTAGTCGTTCAGTGGTCTTGAAATCTTGATGTAAGTTTTATCATGTTCGAA
>chr1B_465
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGGTCAGGTTAAAATT
TCGCACCGGCACCTCAAAATCTCAGGAACGGCTCTGTATCTAGCATGGCTCTCGAAGCCTGGGCGTCATGCGATTTGATC
GTTTTGTGAGAAAAAAATAGATTGGGATTTTTTCGCGCTAAAGTGTTACC-AAGT-GCCAGGTTTGTCAGTTTTCGCGGG
CAGACAAAGCAGCACAGGAGGAAAAGAAGATAAACACGCGCGAAAGCCCGAAACAGCGAGACGGTTG----CAACCTCCA
CGACGCCACCGCGTGCGTCACGA-----------GGCTCTCCCTCGCAGCCGCGTCCACGAATATTCTGGACTCCTCCAG
CGCT-----ACAAACCGCCATGACCAAATCTT------CG-ACCAT-GACC---AT----ACTCCGCCGTATATAAGCCG
GGTCGCGTTCCC-TCTC--CTTTCACCAACC--------CGAGCAAGC--------------------------AAGCAA
AGCCAATTGATTGAGTTGAAGCAAAGTTACAGA--------GCGTGCCCGCAAGAAAGCATCGGCCACCGGAGCAGCTGC
A--------GGAA--------TCATCCCCGTCTCCAA-CCAATCAAGCATGGAGAAGGTGTTAGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACATCGCCGCCGGCGCCGGCGC------CGGGGC---------CAGCTGGGCTCGGTTCTCCT---
---GGCAGGGGAGGAAGCTGCAG------------GAC---GACGGCCAGGCCAGAGCAGGGCAAGAGGGGAAGCAGGGC
GGTCCACCGTCGGAGGCGGAGCAGCAGCCGGACAAGGGGAGATCGC---------CGACGTTGCGGCCGCGGTTCGCGCC
GGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGTGCCACTGATC----AGCG------AGTGAATCACGAGCTGCT
CTGCTCGTGGTCCAGCCGCGC--GTGTGTGCGAGACTA----ATTATTTCTTCGTCTGAT--CACCGTATGATCGGCGTG
TTCATTT--GTTG-TTCACTT--G-TGCTTCTGACTGAAGCCGCGTGTTGTAC------AGAATACAGAGCT-----ATA
AAGAAACCCATTTCGCCGTGATTATTTGGATAAGCTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr1D_606
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TAGAAAAAT-GTCAGATTTGTCGTTTTTCGCGGG
CAGAGAAAGCACCACAGGAGAAAAAGAAGATAAACACGCGCGAAACCACGAAACCGGGAGACGGTTG----CAACCTCCA
CGACGCCACCGCGTGCGTCACGA-----------GGTTCTGCCTCGCGGCCGCGTCCACGAATATTCTGGACTCCTCCAG
CGCT-----AGAAACCGCCTTGCCCAAAACTT------TC-TCCAA-GACC---AT----GCTCCGCCGTATATAAGCCG
GGTCGCGTCCCCCTCCCTCCCTTCACCAAGCCA----AGCGAGCAAGC--------------------------AAGCAA
AGCCAACTGATTGA-TTGAAGCAAAGCCATAGAGCG----TGCGTGCAAGAAAGAAAGCATCGGCCACCGGAGCCGCTGC
A--------GGAA--------TCATCCCCGCCTCCAA-CCAATCCAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACGTCGCACCCGGCGCCGGCGC------C---------------AGCTGGGCTCGGTTCTCCT---
---GGCAGGGGAGGAAGCTGCGG------------GAC---GACGAACAGGCCAGAGCAGGGCAAGAGGGGAAGCAGGGC
GGTCCGCCGGCGGAGGCGGAGCAGGAGCCGGACAAGGGGAAACCGC---------CGACGTTGCGGCCGCGGTTAGCGCC
GGAGTTCGATGGGATCGACTGCTTCGAGACCATCGTGTGCCACTGATGAG------------------------------
---CTCGTGGTCTAAGC---C--GCGCGTGTGAGACTT----GTTCTTTCTTCGTTCGAT--CACCGTACGATCAGCGTG
TCCATTT--GTTG-TGAACTT--G-TGCTTCTAACTGAAGCCGTGTGTTGTAC------AGAATACAGAGGT-----AGA
ATGAAACCCATTTCGCTGTGATTATTTGGATGAGCTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr3D_608
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GAAAAATGGCCAGAATTGTCAAGTTTCACGGG
TAGAGAAGACAGCGCAGGAGG----GAAAGAATATGGACAC----GGGCGAAACCGCGAGACGGTTGCAACCAACCTCCA
CCACGCCACCTCGTGCGTCACGAGCTCGCTCGCTGTTTCTTCCCCGCGGCCGCGTCCACGAATATTCTGGGCTTCTCCAG
CGCT-----TGAAACCGCCATGCCCAAAACTTAAACTTCC-TCCAT-GACC---AT----GCTCCGCCGTATATAAGCCG
GGTCGCGTCCCC-GCTCTCCCTTCACCAAC-------------CAAGC--------------------------AAGCAA
AACCAATTGATTGA-CTGAAGCAAAGTCACAGAGCGAGCGAGCGAGCGTGCAAGAAAGCATCGGCCACCGGAGCTGCTGC
A--------GGAAGCCAGGAATCACC-----CCCGTCTCCAGTCGAGCATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACGTCGTCCCCGGCGC------------------------------------TCGGTTCTCCTGGC
AGCGGCAGGGGAGGAAGCTGCGG------------GAC---GACGGCCAGGCTAGAGCAGGGCAAGACGGGAAGCAGGGC
GGTCTGCCGGCGGAGGCGGAGCAGCAGCCGGACAAGGGGAAATCGC---------CGATGTTGCGGCCGCGGTTCGCGCC
GGAGTTCGACGGGATCGACTGCTTCGGGACCATCGTGTGCCACTGAGC----AGTG------A---ATCA------CTGG
CTGCTCGTGGTCTGCCCGCGC--GCGTGTGA--GACTC----ATTCTTTCATCGTTCGAT--CACCGTACGATCGGCGTG
TTCATTT--GCTG-TTAACTT--G-GGCTTCTAACTGAAGCCGCGTGTTGTAC------AGAATACAGAG-----GTATA
AAGAAACCAATTTCGCCATGATTATTTGGA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr3B_608
GAAAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGGCCAGAATTGTCAATTTTCACTGG
TAGGGAAGACAGCACACGAGG----GAAAGAATATAGACAC----GGGCGAAACCGCGAGACGGTTG----CAACCTCCG
CCACGCCACCGCGTGCGTCACGAGCTCGCTCGCTGGTTCTCCCTCGCGGCCGCGTCCACGAATATCCTGGACTCCTC---
--CAGCGCAAGAAACCGCCATGCCCAAAACTT------CC-TCCAT-GACCGCCAT----GCCCCGCCCTACATAAGCCG
GTTCGCGTCCCC-TCTCTCCCTTCACCAACA-G----AGCAGGCAAGC--------------------------AAGCAA
AGCCAGTTGATTGA-TTGAAGCAAAGTCACAGAGCG----TGCGTGCGTGCAAGAAAGC-------------GCTGCTGC
A--------GGAAGCCAGGAATCACC-----CCCGTCTCCAATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACGTCGCCCCCGGCGCCGGCTC------CGGC---------G---------CTCGGTTCTCCTGGC
AGCGGCAGGGGAGGAAGCTGCAG------------GACGACGACGGCCAGGCCAGAGCAGGGCAAGACGGGAAGCAGGGC
GGTCTGCCGGCGGAGGCGGAGCAGCAGCCGGACAAGGGGAAGTCGCAGTCGCCGCCGACGTTGCAGCCGCGGTTCGCGCC
GGAGTTCGATGGGATCGACTGCTTCGGGACCATCGTGTGCCACTGAGC----ACTG------A---ATGA------CGGG
CTGCTCGTGGTCTGGCCGCGC--GCGTGTGAGAC---------TTATTTCTTCGTTCGATCACACCGTACTATGGGCGTG
TTCATTT--GCTG-TTAACTT--G-GGCTTCTAGCTGAAGCCGCGTGTTGTAC------AGAATACAGTGCT-----GGA
AAGAAACCAATTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr3B_609
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AAAAATGGCCAGAATTGTCAATTTTCACGGG
TAGAGAAGACAGCACAGGAGG----GAAAGAATATAAACAC----GGGCGAAACCGCGAGACGGTTG----CAACCTCCA
CCACGCCACCGCGTGCGTCACGAGCTGGCTCACTGGTTCTCCCTCGCGGCCGCGTCCACGAGTATTCTTGGCTCCTCCAG
CGCTA-GCTAGAACCCGCCATGCCCAAAACTT------CC-TCCATGGACC---AT----GCCCCGCCGTATATAAGCCG
GGTCGCGTCCCC-TCTCTCCCTTCACCAACCCG----AGCAAGCAAGCAAAGCA--------------------AAGCAA
AGCCAATTGATTGA-TTGGAGCAAAGACACAGAGCGAGTGCGG----GTGCAAGAAAGCATCGGCCACCGGAGCTGCAGC
T--------GGAA--------TCATCCCCGTCCCGTCTCGAATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTAAG
CACGTCGCCGGCGCCG----------------------------------------------------------------
---------------------GG------------GGC---GACGTC--GGCTACAGCAGGGCAAGATAGGAAGCAGGGC
GGTCTGCCGGCTGAGGCGGAGCGGCAGCCGGACAAGGGGAAATCACAGTCGCCGCCAACGCTGCGGCCGCGGTTCGCGCC
GGAGTTCGATGGGATCGACTGCTTCGAGACCATCGTGTGCCACTGATC----GGT------GA---ACCA------CGAG
CTGCTCGTGGTCTAGCCGCGCCCGCGCGTGTGGGGCTA----ATTCTTTCCTCGTTCGAT--CACCGTACGATCGGCGTG
TTCATTT--GTTG-TTAACTT--G-TGCTTCTAACTGAAGCCGCCTGTTGTACTTGTACAGCATACAAAG-----CTAGA
AAGAAACCAATTTCGCCGTGATTACTTGGATAAGCTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr1D_621
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TTTGTCAAATTTCACGGG
CAGAGAAAGCAGCACAGGAGG----GAAAAAAAACACGCGCGAAACCCCGAAACCACGAGACGGTTG----CAACCTCCA
CGACGCCACCGCGTGCGTCACGA-----------GGCTCTCCCTCGCGGCCGCGTCCACGAATATTCTGGACTCCTCCAG
CGT-----TACAAACCGCCATGACCAGAACTT------CC-TCCAT-GACC---AT----GCT-CGCCGTATATAACCAG
GGTCGCGTCCCC-TCCCTCTCTTCACCAACCCG----AGTAAGCAAGC--------------------------AAGCAA
AGCCACAG--------------------------------AGCGTGCGTGCAAGAAAGCATCGGCCACCGGAGCTGCTGC
A--------GGAA--------TCATCCCCGTCTACAA-CCAATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACGTCGCCCCCGGCGCCGGCGC------C---------------AGCTGGGCTCGGTTCTCTT---
---GGCAGGGGAGGAAGCTGCGG------------GAC---GACGAACAGGCCAGAGCAGGGCAAGAGGGGAAGCAGGGC
GGTCCGCCGGCGGAGGCGGAGCAGCAGCCGGACAAGGGGAGATCGCAGTCGCCGCCGACGTTGCGGCCGCGGTTCGCGCC
GGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGTGCCGCTGATGAGTGAGT------GA---ATCA------CGAG
CTGCTCGTGGTCTGGCCGCGC--GTGTGAGACTCACA---TGATTCTTTCCTCGTTCGAT--CACCGTACGGTCGGCGTG
TTCATTT--GTGG-TTAACTCGTGCAGCTTCTGACTGAAGCCGCGTGTTGTAC------AGAATACAGAGCTACTGTATA
AAGAAACCCATTTCGCCGTGATTATTTGGATAAGCTTTGGT------------------------TTTTAAGGCTTGATG
AGACGTCATGACGGAGCAGAGATGTTCGGTCGAACTAATCCAGAATTGGAACCGCCCAATCCGAAAAGCGGTGGACACGT
GTGACCTACAGCTCGCTAGATGTCCAAACTACAACCACACGCTGCTACACCACCCAAGAACCAGCACACACACGTCACGT
CGAGGAGGGATTGGTGTGGTACACCTGCAGCTCGGCCCCGCATGGCAGTGAGTTGGACGCGATAAATGGCCTCACGAGAC
TCGCAGCTAGCCCCGAATAAGAAGGAATCGAAGACCCATTTAACACGAATTTAACCATAGTAATATATACTCGCTCTGTA
TCGTAAAAACCTTGTATATTATGGGACGGAGCGACCCAGGAAGTAATAATTTCTCGGTCATACATAGTTACATACAGTAA
ATAGAACATGAGCATATAATTGATGATCAGAATTTGACCTAGATTATGAAACAGCCTTGTATAAATAGATTGAGGGCGTA
GATATTTTTAGTGGGCTGAAAAATCTGAAAAAATTATAAGCCATTGAGACAATATAATCTATATTTTCGCATCACCATCA
TTTGTGTCCACCTAGCACGGAACAGGGACTAAATTTAAAGTAGCTTGATGATCATTAGCCTCTTTACTTTTCAATTATGA
ATCATCAAAGCCATGGGTCAACAATACCTCAAAAACTTAGGGCGGACATACCACCTTCTTGTCCACCCCTAACCCAAGAC
GGGTAAGGCAAACTTTTCTTCTCAGACATCACCGGTGAACCCGTGCATTTGCCTCCCCTCTGCTCA--------------
-----------------------------------GGTTATTAGTTTAGATTAGGGTTTCCTAGTGATTGCAGATGCGGC
ACTCAGGCGGGTGACAGTGTTTCTTCTTCGAGTTTGCCTTCCGAGCTTCGTTCCCCCTCGAGTTCGTTTGTTTGGAAGTG
GTCGACGGAGCTTCGGCGTAGATTCCCGTTGACTCCTTGGGGTGACGAGGTTAGGGATTCTCTTTATGTGGCGAGACTTG
GTGTCAGGTGCTTTAGATCTATGCAAGAGTTCGACGGCGATGAGTGGGCCTACATGATGTTGGTTCTTAGGGTCGCATGC
ACAAAAACTTTCCGGCTGTCATCAACAAGGTCAAGTTAGTTCCGATAGAGCGACAACAGCGATACTTGGGCGCTC-TTTC
TGACTGCAGTAGTAGTCGTTCAGTGGTCTTGAAATCTTAATATAATTCTTATTATGTTCGAA
>chr3A_644
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACAGCACAGGAGG----GAAAGAATATAGACAC----GGGCGAAA-CGCGAGACGGTTG----GAACCTCCG
CCACGCCACCGCGTGCGTCACGAGCTGGCTCGCCGGTTCTCCCTCGCGGCCGCGTCCACGAATATTCTGGGCTCCTCCAG
CGC-GCGCAAGAAACCGCCATGCCCAAAACTT------CC-TCCAT-GACC---AT----GCCCCGCCGTATATAAGCCG
GGTCGCGTCCCC-TCTCTCCCTTCACCAAGCCG----AGCAAGCAAGC--------------------------AAGCAA
AGCCAATTGATTGA-TTGAAGCAAAGTCACAGAACGAGCGTGCGTGCGTGCAAGAAAGCATCGGCCACCGGAGCTGCTGC
A--------GGAAGCCAGGAATCACC-----CCCGTCTCCAGTCGAGCATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCCGACGTCGCCCCCGGCGCCGGCGC------CGGC---------G---------CTCGGTTCTCCTGGC
AGCGGCAGGGGAGGAAGCTGCGG------------GAC---GACGGCCAGGCTAGAGCAGGGCGAGAGGGGAAGCGGGGC
GGTCTGCCGGCGGAGGCGGAGCAGCAGCCGGAGGAGGGGAAGTCGCGGTCGCCGCCGACGTTGCCGCCGCGGTTCGCGCC
GGAGTTCGACGGGATCGACTGCTTCGGGACCATCGTGTGCCACTGAGC----AGTGAATCAGA---ATCA------CGGG
CTGCTCGTGGTCTGGCCGCGC--GCCTGGGTGGGACTA----ATTATTTCTTCGTTCGAT--CACCGTGCGATCGGCGTG
TTCATTT--GCTG-TCAACTT--G-AGCTTCCAACTGATGCCGCGTGTTGTAC------AGAATACAGAGGTA-----TA
AAGAAACCAATTTCACCGTGATTATTTGGA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr3B_684
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GCGCGAAACCACAGAACGGTTG----CAACCTCCA
CCACGCCACCGCGTTT-TCACGAGCTCGCTCGCTGGTTCTCCCTCACGGCCGCGTCCACGAATATTCTGGACTCCTCCAG
CGC-GCGCTAGAAACCGCCATGCCCAAAACTT------CC-TCCAT-GACC---AT----GCCCCGCCGTATATAAGCCG
GGTCGCGTCGCC-GCTCTCCCTTCACCAAGT-------------------------------------------AAGCAA
AGCCAGTTGATTAA-TTGAAGCAAAGTCACAGAGCG----TGCGTGCGTGCAAGAAAGCGTCGGCCGCCGGAGCTGCTGC
AGGAAGCCAGGAA--------TCATC-----CCCGTCTCCAATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCTGACGTCGCCCCCGGCGCCGGCTC------CGGCAACAGCTGGG---------CTCGGCTCTCCTGGC
AGCGGCAGGGGAGGAGGCTGCAGGAGCAGCAGGACGAC---GACGACCAGGCTAGAGCAGGGCAAGACGGAAAGCAGCGC
GGTCTGCCGGCTGAGGCGGAGCAGCAGCCGGACAAGGGGAAATCGCAGTCACCGCCGACGTTGAGGGCGCGGTTCGCGCC
GGAGTTCGATGGGATCGACTGCTTCGGGACCATCGTGTGCCACTGATC----AGT------GA---ATCA------CGAG
CTGCTCGTGGTC-------------GTGTGTGAGACTA----ATTCTTTCTT-------------CGTGCGATCGGCGCG
TTCATTT--GCTG-TTAACTT--G-TGCTTCCAACTGAAGCCGCGTGTTGTAC------AGAATGCAGAGCTA-----GA
AAGAAACCAATTTCGCCATGATTATTTGGA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr7A_688
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GAAACAGTGAGACGGTTG----CAACCGCCA
CCACGCCACCGCGTGCGTCACCACCTCCTTAC--------CCCTCGCAGCCGCGTCCACCAATATTCTGGTCTCCTCCAG
CGCAGCGCAGGAAACCGCCATGCCCAAAGCTT------CC-TCCTT-GCCA---ATTGCCACCAAGCCGTATATAAGCCG
GGTCGCGTGGCC-TTTCTCCCTTCACCAACCCC----AGCAAGAAACAACCCAAGCAAAGCCACCAATTGATTGAAGCAA
AGTCACAG--------------------------------AGCCTGCGTGCAAGAAAGCGTCGGCCACCTGAGCTGCTGC
C--------GGAA--------TCATC-----CCCGTCTCCTATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
TGCATCGCCGGCCGACATCGCCCTCGGCACCGGCGC------CAGC---------GGCAGCTGGGCTCGGCTGTCCT---
---GGCGGGGAAGGAAGCTGCAG------------GTG---GACGACCGGGCTGGAGCAGAGCACCAAGGGAAGCAGGGC
GGTCTGCCGCGGGAGGCAGAGCAGCGGCACGACAAAGGGAAATCGCAGTCGCCGTCGACGTTGCCGCCACGGTTTGCGCC
CGAGTTTGATGGGATCGACTGCTTTGAGACCATCGTGTGCCATTGATC----GGT------GATGAATCG------CGAT
CTGCTCCTGTTCCCGCCGCGC--GTGTGACT---ACTA----ATTCTTTCTTCTT----------CATACTATCGGCATG
TTCATTC--GTTG-TTAAGTT--G-TGCTTCTAACTGAAGCCGGATGTTGTAC------AGAATACAGAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr4A_744
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCCTCGCTGCCGCGTCCATCAATATTCTGGTCTCCTCCAG
CGCA-----GGAAACCGCCATGCCTAAAGCTT------CC-TCCAT-GCC----------ACTAAGCCGTATATAAACCG
GGTGGCGTGGCC-TTTCTCCCTTCACCAACCCC----AGCAAGAAACGACCCAAGCAAAGCCACCAATTGATTGAAGCAA
AGTCACAG--------------------------------AGCCTGCGTGCAAGAAAGCCTCGGCCACCGGAGCTGCTGC
A--------GGAA--------TTATC-----CCCGTCTCCTATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCGTCGCCGGCAGACATCGCCCCCGGCGCCGGCGG------A---------------AGCTGGGCTCGGCTGTCTT---
---GGTGGGGGAGGAAGCTGCAG------------GAG---GACGACCGGACTGGATCAGAGCACCAAGGGAAGCAGGGC
GGTCTGCCGCGGGAGGCAGAGCAGCGGCCGGACAAAGGGAAATCGCAGTCACCGTCGACGTTGCCGCCACGGTTTGCGCC
GGAGTTTGATGGGATCGACTGCTTCGAGACCATCGTGTGCCATTGATC----GCT------GATGAATCG------TGAT
CTGCTCGTGGTCCAGCCGGGC--GTGTGACT---ACTA----ATTCTTTCTCCGTTTGAC--GGCCGTACGATCGGCGTG
TTCATTC--GTTG-TTAACTTGTG-TGCTTCTAACTGAAGCCGGATGTTGTAC------AGAATACAGAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>chr7D_830
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GCCGTATATAAGCCG
GGGCGCGTGGCC-TTTCTCCCTTCACCAACCCC----ATCAAGAAACAACCCAAGCAAAGCCACCAATTGATTGAAGCAA
AGTCACAG--------------------------------AGCCTGCGTGCAAGAAAGCCTCGGCCACCGGAGCTGCTGC
AG--------------------------------GTCTCCTATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAG
CGCCTCGCCGGCCGACATCGCCCCCGGCGCCGGCAAAGGCGGC---------------AGCTGGGCCCGGCTCTCCT---
---GGCGGGGGAGGAAGCTGCAG------------GAG---GGCGACCGGGCAGGAGCAGAGCACCAAGGGAAGCAGGGA
GGCCTGCCGCGGGAGGCAGAGCAACAGCCGGGCAAAGGGAAATCGCAGTCGCCGTCAACGTTGCCGCCGCGGTTTGCGCC
GGAGTTTGATGGGATCGACTGCTTCGAGACCATCGTGTGCCATTGATC----GCT------GATGAATCG------CGAT
CTGCTCGTGGTCCAGCCGGGC--GTGTGGCT---ACGTACTGATTCTTTCTCCGTTTGTC--GGCCGTACGATCGGCGTG
TTCATAC--GTTTCTTAACTT--G-TGCTTCTAACTGAAGCCGGATGCTGTAC------AGAATACAGAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>SNPs
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S--------
----SSSS-SS-SS---------S---S---S-S-------S-S-----S-S-S-S---S--S-------SS-S---SS-
S--------SS---SSS-SS---S-SS-SS---SSS--S-----S--------------------S--------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S-------S-S----------------S------------
---------------------------------SSSS-------------------------------------------
--S----S-----------------S---SSSS-----------------------------------------------
----------------------------------------S---------------------------------------
--------------------------S-------------------------------S---------------------
--------------------------------------------------------------------------------
-------------S-------------------------------------------S----------------------
--------------------------------------------------S-----------------------------
------------------------------------S---------------S---------------------------
-------SS--------------S--------------------------S-----------S-------SS--------
-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----
------------------------S--S---S--S---------------------------------S-----------
----S-----S----------------------------------------------S-----------S----------
S----SSSSSS-------------------------------------------SS-S---SS----S---------S-S
S-SS--SSS-S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S----S--S--------S----------S-----
S-S--S-------------S---------------S--SS-----S---S----S---S--S-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----SS----SS-----S------S------
----S---S-S--SSS------S----S--------S---S-------S-S----------------SS-----S----S
-----S----S------S-------SS---SSS-SS---S--S--SS---------S--S----SS--------------
------S---S--------S--------------------S--S--S-S--S--SSS----S---------SSSS-S---
-----S-----S-SS-------S--S--------SS-S-S-----------S----------SSSS-S---SSSSS----
------S-------------------------------S--S---S-S----S---------
>forward_396
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAACTGCCACGTCGCTCTA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>reverse_2863
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CGTGTCGGCAGGTTTTTC
TG------------------------------------------------------------
