Multiple sequence alignment - TraesCS1A01G379400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G379400 chr1A 100.000 2997 0 0 1 2997 551495142 551492146 0.000000e+00 5535.0
1 TraesCS1A01G379400 chr1D 94.010 1035 32 15 804 1820 459279006 459277984 0.000000e+00 1541.0
2 TraesCS1A01G379400 chr1D 90.748 735 58 6 2255 2981 377915580 377914848 0.000000e+00 972.0
3 TraesCS1A01G379400 chr1D 90.646 727 63 3 2259 2981 238647217 238647942 0.000000e+00 961.0
4 TraesCS1A01G379400 chr1D 90.634 726 62 4 2260 2981 92753521 92754244 0.000000e+00 959.0
5 TraesCS1A01G379400 chr1D 92.267 375 16 5 1878 2243 459277656 459277286 1.230000e-143 520.0
6 TraesCS1A01G379400 chr1D 88.435 294 14 6 478 771 459279362 459279089 1.330000e-88 337.0
7 TraesCS1A01G379400 chr1B 93.482 1028 44 11 836 1850 631236223 631235206 0.000000e+00 1506.0
8 TraesCS1A01G379400 chr1B 87.885 454 41 12 3 447 625993268 625993716 3.420000e-144 521.0
9 TraesCS1A01G379400 chr1B 81.982 111 19 1 475 585 420350350 420350459 3.180000e-15 93.5
10 TraesCS1A01G379400 chr3A 91.084 729 59 4 2258 2981 444720820 444720093 0.000000e+00 981.0
11 TraesCS1A01G379400 chr3D 90.934 728 62 2 2258 2981 552421495 552422222 0.000000e+00 976.0
12 TraesCS1A01G379400 chr2D 90.809 729 62 3 2257 2981 607135044 607135771 0.000000e+00 970.0
13 TraesCS1A01G379400 chr2D 90.685 730 64 2 2256 2981 645448277 645447548 0.000000e+00 968.0
14 TraesCS1A01G379400 chr2D 91.667 444 27 4 3 440 573782590 573782151 9.190000e-170 606.0
15 TraesCS1A01G379400 chr2D 90.802 424 32 5 35 455 102325485 102325904 7.260000e-156 560.0
16 TraesCS1A01G379400 chr2D 88.769 463 35 10 3 457 13084698 13085151 4.370000e-153 551.0
17 TraesCS1A01G379400 chr2D 89.262 447 35 8 3 440 13593055 13592613 5.650000e-152 547.0
18 TraesCS1A01G379400 chr2D 83.082 597 97 4 1118 1712 480070006 480070600 9.450000e-150 540.0
19 TraesCS1A01G379400 chr7D 90.672 729 64 2 2257 2981 22967905 22968633 0.000000e+00 966.0
20 TraesCS1A01G379400 chr7D 90.535 729 65 2 2257 2981 22950671 22949943 0.000000e+00 961.0
21 TraesCS1A01G379400 chr7D 88.121 463 40 12 3 455 9208823 9209280 1.220000e-148 536.0
22 TraesCS1A01G379400 chr7D 86.749 483 49 11 6 481 322018945 322018471 9.520000e-145 523.0
23 TraesCS1A01G379400 chr7D 87.391 460 45 9 4 455 564901499 564901045 1.590000e-142 516.0
24 TraesCS1A01G379400 chr2A 83.417 597 95 4 1118 1712 622275600 622276194 4.370000e-153 551.0
25 TraesCS1A01G379400 chr2A 81.928 83 14 1 474 556 603731646 603731727 5.360000e-08 69.4
26 TraesCS1A01G379400 chr6D 86.929 482 45 13 8 481 261025925 261026396 2.650000e-145 525.0
27 TraesCS1A01G379400 chr6D 75.523 478 93 19 1222 1687 69270781 69270316 2.340000e-51 213.0
28 TraesCS1A01G379400 chr6A 78.108 370 65 13 1222 1583 87312138 87311777 1.400000e-53 220.0
29 TraesCS1A01G379400 chr3B 76.190 420 94 6 1222 1638 51062636 51062220 1.810000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G379400 chr1A 551492146 551495142 2996 True 5535.000000 5535 100.000000 1 2997 1 chr1A.!!$R1 2996
1 TraesCS1A01G379400 chr1D 377914848 377915580 732 True 972.000000 972 90.748000 2255 2981 1 chr1D.!!$R1 726
2 TraesCS1A01G379400 chr1D 238647217 238647942 725 False 961.000000 961 90.646000 2259 2981 1 chr1D.!!$F2 722
3 TraesCS1A01G379400 chr1D 92753521 92754244 723 False 959.000000 959 90.634000 2260 2981 1 chr1D.!!$F1 721
4 TraesCS1A01G379400 chr1D 459277286 459279362 2076 True 799.333333 1541 91.570667 478 2243 3 chr1D.!!$R2 1765
5 TraesCS1A01G379400 chr1B 631235206 631236223 1017 True 1506.000000 1506 93.482000 836 1850 1 chr1B.!!$R1 1014
6 TraesCS1A01G379400 chr3A 444720093 444720820 727 True 981.000000 981 91.084000 2258 2981 1 chr3A.!!$R1 723
7 TraesCS1A01G379400 chr3D 552421495 552422222 727 False 976.000000 976 90.934000 2258 2981 1 chr3D.!!$F1 723
8 TraesCS1A01G379400 chr2D 607135044 607135771 727 False 970.000000 970 90.809000 2257 2981 1 chr2D.!!$F4 724
9 TraesCS1A01G379400 chr2D 645447548 645448277 729 True 968.000000 968 90.685000 2256 2981 1 chr2D.!!$R3 725
10 TraesCS1A01G379400 chr2D 480070006 480070600 594 False 540.000000 540 83.082000 1118 1712 1 chr2D.!!$F3 594
11 TraesCS1A01G379400 chr7D 22967905 22968633 728 False 966.000000 966 90.672000 2257 2981 1 chr7D.!!$F2 724
12 TraesCS1A01G379400 chr7D 22949943 22950671 728 True 961.000000 961 90.535000 2257 2981 1 chr7D.!!$R1 724
13 TraesCS1A01G379400 chr2A 622275600 622276194 594 False 551.000000 551 83.417000 1118 1712 1 chr2A.!!$F2 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 436 0.099436 GCGCCACTGCTATTTTCCTG 59.901 55.0 0.0 0.0 34.43 3.86 F
634 635 0.105709 TGCCCACCATAGAGATCCGA 60.106 55.0 0.0 0.0 0.00 4.55 F
664 665 0.108804 GCGCAGTTGAGGCTAGTGTA 60.109 55.0 0.3 0.0 0.00 2.90 F
1468 1540 0.252103 TGTACCACCTCACCTCCTCC 60.252 60.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1941 0.167908 CCACACACACACACACACAC 59.832 55.0 0.00 0.00 0.0 3.82 R
1859 1942 0.250510 ACCACACACACACACACACA 60.251 50.0 0.00 0.00 0.0 3.72 R
1861 1944 0.250510 ACACCACACACACACACACA 60.251 50.0 0.00 0.00 0.0 3.72 R
2460 2821 0.393132 GGCCTCCAGCTTTAGGTGTC 60.393 60.0 11.82 0.95 41.6 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.389687 CAGTCTCACACACACAAACAC 57.610 47.619 0.00 0.00 0.00 3.32
21 22 2.095853 CAGTCTCACACACACAAACACC 59.904 50.000 0.00 0.00 0.00 4.16
22 23 1.400494 GTCTCACACACACAAACACCC 59.600 52.381 0.00 0.00 0.00 4.61
23 24 0.738389 CTCACACACACAAACACCCC 59.262 55.000 0.00 0.00 0.00 4.95
24 25 0.681564 TCACACACACAAACACCCCC 60.682 55.000 0.00 0.00 0.00 5.40
38 39 2.912714 CCCCCGGATCGCCTTTTA 59.087 61.111 0.73 0.00 0.00 1.52
39 40 1.227853 CCCCCGGATCGCCTTTTAG 60.228 63.158 0.73 0.00 0.00 1.85
40 41 1.227853 CCCCGGATCGCCTTTTAGG 60.228 63.158 0.73 0.00 38.80 2.69
41 42 1.525442 CCCGGATCGCCTTTTAGGT 59.475 57.895 0.73 0.00 37.80 3.08
42 43 0.107361 CCCGGATCGCCTTTTAGGTT 60.107 55.000 0.73 0.00 37.80 3.50
43 44 1.680860 CCCGGATCGCCTTTTAGGTTT 60.681 52.381 0.73 0.00 37.80 3.27
44 45 2.089201 CCGGATCGCCTTTTAGGTTTT 58.911 47.619 0.00 0.00 37.80 2.43
45 46 3.272581 CCGGATCGCCTTTTAGGTTTTA 58.727 45.455 0.00 0.00 37.80 1.52
46 47 3.311596 CCGGATCGCCTTTTAGGTTTTAG 59.688 47.826 0.00 0.00 37.80 1.85
47 48 4.186159 CGGATCGCCTTTTAGGTTTTAGA 58.814 43.478 0.00 0.00 37.80 2.10
48 49 4.632688 CGGATCGCCTTTTAGGTTTTAGAA 59.367 41.667 0.00 0.00 37.80 2.10
49 50 5.122711 CGGATCGCCTTTTAGGTTTTAGAAA 59.877 40.000 0.00 0.00 37.80 2.52
50 51 6.348704 CGGATCGCCTTTTAGGTTTTAGAAAA 60.349 38.462 0.00 0.00 37.80 2.29
51 52 7.372714 GGATCGCCTTTTAGGTTTTAGAAAAA 58.627 34.615 0.00 0.00 37.80 1.94
52 53 8.033038 GGATCGCCTTTTAGGTTTTAGAAAAAT 58.967 33.333 0.00 0.00 37.80 1.82
112 113 7.422465 AAAAATAGATGCCCATGTGTTATGT 57.578 32.000 0.00 0.00 0.00 2.29
113 114 6.395426 AAATAGATGCCCATGTGTTATGTG 57.605 37.500 0.00 0.00 0.00 3.21
114 115 3.370840 AGATGCCCATGTGTTATGTGT 57.629 42.857 0.00 0.00 0.00 3.72
115 116 3.700538 AGATGCCCATGTGTTATGTGTT 58.299 40.909 0.00 0.00 0.00 3.32
116 117 3.696051 AGATGCCCATGTGTTATGTGTTC 59.304 43.478 0.00 0.00 0.00 3.18
117 118 3.153369 TGCCCATGTGTTATGTGTTCT 57.847 42.857 0.00 0.00 0.00 3.01
118 119 4.293662 TGCCCATGTGTTATGTGTTCTA 57.706 40.909 0.00 0.00 0.00 2.10
119 120 4.260985 TGCCCATGTGTTATGTGTTCTAG 58.739 43.478 0.00 0.00 0.00 2.43
120 121 4.261801 GCCCATGTGTTATGTGTTCTAGT 58.738 43.478 0.00 0.00 0.00 2.57
121 122 4.700213 GCCCATGTGTTATGTGTTCTAGTT 59.300 41.667 0.00 0.00 0.00 2.24
122 123 5.391950 GCCCATGTGTTATGTGTTCTAGTTG 60.392 44.000 0.00 0.00 0.00 3.16
123 124 5.705441 CCCATGTGTTATGTGTTCTAGTTGT 59.295 40.000 0.00 0.00 0.00 3.32
124 125 6.206634 CCCATGTGTTATGTGTTCTAGTTGTT 59.793 38.462 0.00 0.00 0.00 2.83
125 126 7.389330 CCCATGTGTTATGTGTTCTAGTTGTTA 59.611 37.037 0.00 0.00 0.00 2.41
126 127 8.443160 CCATGTGTTATGTGTTCTAGTTGTTAG 58.557 37.037 0.00 0.00 0.00 2.34
127 128 7.956420 TGTGTTATGTGTTCTAGTTGTTAGG 57.044 36.000 0.00 0.00 0.00 2.69
128 129 7.728148 TGTGTTATGTGTTCTAGTTGTTAGGA 58.272 34.615 0.00 0.00 0.00 2.94
129 130 7.654520 TGTGTTATGTGTTCTAGTTGTTAGGAC 59.345 37.037 0.00 0.00 38.24 3.85
130 131 7.654520 GTGTTATGTGTTCTAGTTGTTAGGACA 59.345 37.037 0.00 0.00 44.09 4.02
131 132 8.205512 TGTTATGTGTTCTAGTTGTTAGGACAA 58.794 33.333 0.00 0.00 46.95 3.18
132 133 9.216117 GTTATGTGTTCTAGTTGTTAGGACAAT 57.784 33.333 0.00 0.00 46.95 2.71
133 134 9.787435 TTATGTGTTCTAGTTGTTAGGACAATT 57.213 29.630 0.00 0.00 46.95 2.32
135 136 9.787435 ATGTGTTCTAGTTGTTAGGACAATTAA 57.213 29.630 0.00 0.00 46.95 1.40
136 137 9.787435 TGTGTTCTAGTTGTTAGGACAATTAAT 57.213 29.630 0.00 0.00 46.95 1.40
176 177 1.068250 TTTTTGGAAAAGGCCGCCG 59.932 52.632 3.05 0.00 0.00 6.46
177 178 1.677637 TTTTTGGAAAAGGCCGCCGT 61.678 50.000 3.05 0.00 0.00 5.68
178 179 2.356818 TTTTGGAAAAGGCCGCCGTG 62.357 55.000 3.05 0.00 0.00 4.94
179 180 4.572571 TGGAAAAGGCCGCCGTGT 62.573 61.111 3.05 0.00 0.00 4.49
180 181 3.292159 GGAAAAGGCCGCCGTGTT 61.292 61.111 3.05 0.00 0.00 3.32
181 182 2.725641 GAAAAGGCCGCCGTGTTT 59.274 55.556 3.05 6.13 0.00 2.83
182 183 1.371267 GAAAAGGCCGCCGTGTTTC 60.371 57.895 15.89 15.89 0.00 2.78
183 184 3.189010 AAAAGGCCGCCGTGTTTCG 62.189 57.895 3.05 0.00 39.52 3.46
194 195 1.971792 CGTGTTTCGGTAAAATGGCC 58.028 50.000 0.00 0.00 35.71 5.36
199 200 3.491356 GTTTCGGTAAAATGGCCGTAAC 58.509 45.455 0.00 9.04 45.72 2.50
202 203 3.835378 CGGTAAAATGGCCGTAACTTT 57.165 42.857 0.00 0.00 42.73 2.66
203 204 4.163458 CGGTAAAATGGCCGTAACTTTT 57.837 40.909 0.00 0.00 42.73 2.27
204 205 3.915569 CGGTAAAATGGCCGTAACTTTTG 59.084 43.478 0.00 0.00 42.73 2.44
205 206 3.676172 GGTAAAATGGCCGTAACTTTTGC 59.324 43.478 0.00 0.00 0.00 3.68
206 207 3.460857 AAAATGGCCGTAACTTTTGCA 57.539 38.095 0.00 0.00 0.00 4.08
207 208 3.676291 AAATGGCCGTAACTTTTGCAT 57.324 38.095 0.00 0.00 0.00 3.96
208 209 4.792521 AAATGGCCGTAACTTTTGCATA 57.207 36.364 0.00 0.00 0.00 3.14
209 210 3.775661 ATGGCCGTAACTTTTGCATAC 57.224 42.857 0.00 0.00 0.00 2.39
210 211 1.465387 TGGCCGTAACTTTTGCATACG 59.535 47.619 9.33 9.33 41.42 3.06
211 212 1.733360 GGCCGTAACTTTTGCATACGA 59.267 47.619 16.28 0.00 43.71 3.43
212 213 2.475022 GGCCGTAACTTTTGCATACGAC 60.475 50.000 16.28 6.50 43.71 4.34
213 214 2.475022 GCCGTAACTTTTGCATACGACC 60.475 50.000 16.28 5.40 43.71 4.79
214 215 2.997986 CCGTAACTTTTGCATACGACCT 59.002 45.455 16.28 0.00 43.71 3.85
215 216 3.061697 CCGTAACTTTTGCATACGACCTC 59.938 47.826 16.28 0.00 43.71 3.85
216 217 3.061697 CGTAACTTTTGCATACGACCTCC 59.938 47.826 10.53 0.00 43.71 4.30
217 218 1.722011 ACTTTTGCATACGACCTCCG 58.278 50.000 0.00 0.00 45.44 4.63
218 219 1.274167 ACTTTTGCATACGACCTCCGA 59.726 47.619 0.00 0.00 41.76 4.55
219 220 2.093658 ACTTTTGCATACGACCTCCGAT 60.094 45.455 0.00 0.00 41.76 4.18
220 221 1.934589 TTTGCATACGACCTCCGATG 58.065 50.000 0.00 0.00 41.76 3.84
221 222 1.107945 TTGCATACGACCTCCGATGA 58.892 50.000 0.00 0.00 41.76 2.92
222 223 1.107945 TGCATACGACCTCCGATGAA 58.892 50.000 0.00 0.00 41.76 2.57
223 224 1.478916 TGCATACGACCTCCGATGAAA 59.521 47.619 0.00 0.00 41.76 2.69
224 225 2.093921 TGCATACGACCTCCGATGAAAA 60.094 45.455 0.00 0.00 41.76 2.29
225 226 2.933906 GCATACGACCTCCGATGAAAAA 59.066 45.455 0.00 0.00 41.76 1.94
226 227 3.001330 GCATACGACCTCCGATGAAAAAG 59.999 47.826 0.00 0.00 41.76 2.27
227 228 2.833631 ACGACCTCCGATGAAAAAGT 57.166 45.000 0.00 0.00 41.76 2.66
228 229 3.121738 ACGACCTCCGATGAAAAAGTT 57.878 42.857 0.00 0.00 41.76 2.66
229 230 3.473625 ACGACCTCCGATGAAAAAGTTT 58.526 40.909 0.00 0.00 41.76 2.66
230 231 3.881089 ACGACCTCCGATGAAAAAGTTTT 59.119 39.130 0.00 0.00 41.76 2.43
231 232 4.337274 ACGACCTCCGATGAAAAAGTTTTT 59.663 37.500 13.35 13.35 41.76 1.94
275 276 8.215899 CTTGAAAAGTTACATCCGAATTCAAC 57.784 34.615 6.22 1.29 39.70 3.18
276 277 6.674066 TGAAAAGTTACATCCGAATTCAACC 58.326 36.000 6.22 0.00 0.00 3.77
277 278 4.939509 AAGTTACATCCGAATTCAACCG 57.060 40.909 6.22 0.00 0.00 4.44
278 279 3.267483 AGTTACATCCGAATTCAACCGG 58.733 45.455 0.00 0.00 46.57 5.28
279 280 3.004862 GTTACATCCGAATTCAACCGGT 58.995 45.455 0.00 0.00 45.48 5.28
280 281 1.448985 ACATCCGAATTCAACCGGTG 58.551 50.000 8.52 2.16 45.48 4.94
281 282 0.732571 CATCCGAATTCAACCGGTGG 59.267 55.000 8.52 4.63 45.48 4.61
282 283 0.616371 ATCCGAATTCAACCGGTGGA 59.384 50.000 8.52 8.18 45.48 4.02
283 284 0.397187 TCCGAATTCAACCGGTGGAA 59.603 50.000 26.45 26.45 45.48 3.53
284 285 0.519961 CCGAATTCAACCGGTGGAAC 59.480 55.000 26.78 13.93 40.78 3.62
299 300 4.937201 GTGGAACCCTGTTGAAGATTTT 57.063 40.909 0.00 0.00 0.00 1.82
300 301 5.276461 GTGGAACCCTGTTGAAGATTTTT 57.724 39.130 0.00 0.00 0.00 1.94
301 302 6.399639 GTGGAACCCTGTTGAAGATTTTTA 57.600 37.500 0.00 0.00 0.00 1.52
302 303 6.447162 GTGGAACCCTGTTGAAGATTTTTAG 58.553 40.000 0.00 0.00 0.00 1.85
303 304 6.264518 GTGGAACCCTGTTGAAGATTTTTAGA 59.735 38.462 0.00 0.00 0.00 2.10
304 305 6.836527 TGGAACCCTGTTGAAGATTTTTAGAA 59.163 34.615 0.00 0.00 0.00 2.10
305 306 7.508977 TGGAACCCTGTTGAAGATTTTTAGAAT 59.491 33.333 0.00 0.00 0.00 2.40
306 307 8.029522 GGAACCCTGTTGAAGATTTTTAGAATC 58.970 37.037 0.00 0.00 0.00 2.52
307 308 7.468141 ACCCTGTTGAAGATTTTTAGAATCC 57.532 36.000 0.00 0.00 0.00 3.01
308 309 6.437477 ACCCTGTTGAAGATTTTTAGAATCCC 59.563 38.462 0.00 0.00 0.00 3.85
309 310 6.127338 CCCTGTTGAAGATTTTTAGAATCCCC 60.127 42.308 0.00 0.00 0.00 4.81
310 311 6.437162 CCTGTTGAAGATTTTTAGAATCCCCA 59.563 38.462 0.00 0.00 0.00 4.96
311 312 7.039082 CCTGTTGAAGATTTTTAGAATCCCCAA 60.039 37.037 0.00 0.00 0.00 4.12
312 313 8.256356 TGTTGAAGATTTTTAGAATCCCCAAA 57.744 30.769 3.22 0.00 0.00 3.28
313 314 8.709308 TGTTGAAGATTTTTAGAATCCCCAAAA 58.291 29.630 3.22 0.00 0.00 2.44
314 315 9.554395 GTTGAAGATTTTTAGAATCCCCAAAAA 57.446 29.630 0.00 0.00 36.06 1.94
315 316 9.554395 TTGAAGATTTTTAGAATCCCCAAAAAC 57.446 29.630 0.00 0.00 34.86 2.43
316 317 8.154203 TGAAGATTTTTAGAATCCCCAAAAACC 58.846 33.333 0.00 0.00 34.86 3.27
317 318 7.872061 AGATTTTTAGAATCCCCAAAAACCT 57.128 32.000 0.00 0.00 34.86 3.50
318 319 8.966155 AGATTTTTAGAATCCCCAAAAACCTA 57.034 30.769 0.00 0.00 34.86 3.08
319 320 9.387397 AGATTTTTAGAATCCCCAAAAACCTAA 57.613 29.630 0.00 0.00 34.86 2.69
320 321 9.431887 GATTTTTAGAATCCCCAAAAACCTAAC 57.568 33.333 0.00 0.00 34.86 2.34
321 322 7.916077 TTTTAGAATCCCCAAAAACCTAACA 57.084 32.000 0.00 0.00 0.00 2.41
322 323 7.533289 TTTAGAATCCCCAAAAACCTAACAG 57.467 36.000 0.00 0.00 0.00 3.16
323 324 5.333566 AGAATCCCCAAAAACCTAACAGA 57.666 39.130 0.00 0.00 0.00 3.41
324 325 5.711698 AGAATCCCCAAAAACCTAACAGAA 58.288 37.500 0.00 0.00 0.00 3.02
325 326 6.322931 AGAATCCCCAAAAACCTAACAGAAT 58.677 36.000 0.00 0.00 0.00 2.40
326 327 7.475299 AGAATCCCCAAAAACCTAACAGAATA 58.525 34.615 0.00 0.00 0.00 1.75
327 328 7.953493 AGAATCCCCAAAAACCTAACAGAATAA 59.047 33.333 0.00 0.00 0.00 1.40
328 329 8.499288 AATCCCCAAAAACCTAACAGAATAAA 57.501 30.769 0.00 0.00 0.00 1.40
329 330 7.916077 TCCCCAAAAACCTAACAGAATAAAA 57.084 32.000 0.00 0.00 0.00 1.52
330 331 8.499288 TCCCCAAAAACCTAACAGAATAAAAT 57.501 30.769 0.00 0.00 0.00 1.82
331 332 9.603189 TCCCCAAAAACCTAACAGAATAAAATA 57.397 29.630 0.00 0.00 0.00 1.40
339 340 8.828688 ACCTAACAGAATAAAATATACGAGGC 57.171 34.615 0.00 0.00 0.00 4.70
340 341 8.648693 ACCTAACAGAATAAAATATACGAGGCT 58.351 33.333 0.00 0.00 0.00 4.58
341 342 9.490379 CCTAACAGAATAAAATATACGAGGCTT 57.510 33.333 0.00 0.00 0.00 4.35
355 356 5.461032 ACGAGGCTTATAAGATCTGAAGG 57.539 43.478 16.85 3.35 0.00 3.46
356 357 5.141182 ACGAGGCTTATAAGATCTGAAGGA 58.859 41.667 16.85 0.00 0.00 3.36
357 358 5.598830 ACGAGGCTTATAAGATCTGAAGGAA 59.401 40.000 16.85 0.00 0.00 3.36
358 359 6.268847 ACGAGGCTTATAAGATCTGAAGGAAT 59.731 38.462 16.85 0.00 0.00 3.01
359 360 7.158021 CGAGGCTTATAAGATCTGAAGGAATT 58.842 38.462 16.85 0.00 0.00 2.17
360 361 7.659390 CGAGGCTTATAAGATCTGAAGGAATTT 59.341 37.037 16.85 0.00 0.00 1.82
361 362 9.348476 GAGGCTTATAAGATCTGAAGGAATTTT 57.652 33.333 16.85 0.00 0.00 1.82
362 363 9.706529 AGGCTTATAAGATCTGAAGGAATTTTT 57.293 29.630 16.85 0.00 0.00 1.94
429 430 2.350895 TGGTGCGCCACTGCTATT 59.649 55.556 16.89 0.00 40.46 1.73
430 431 1.303236 TGGTGCGCCACTGCTATTT 60.303 52.632 16.89 0.00 40.46 1.40
431 432 0.893270 TGGTGCGCCACTGCTATTTT 60.893 50.000 16.89 0.00 40.46 1.82
432 433 0.179163 GGTGCGCCACTGCTATTTTC 60.179 55.000 12.58 0.00 34.40 2.29
433 434 0.179163 GTGCGCCACTGCTATTTTCC 60.179 55.000 4.18 0.00 35.36 3.13
434 435 0.322456 TGCGCCACTGCTATTTTCCT 60.322 50.000 4.18 0.00 35.36 3.36
435 436 0.099436 GCGCCACTGCTATTTTCCTG 59.901 55.000 0.00 0.00 34.43 3.86
436 437 0.099436 CGCCACTGCTATTTTCCTGC 59.901 55.000 0.00 0.00 34.43 4.85
437 438 0.457443 GCCACTGCTATTTTCCTGCC 59.543 55.000 0.00 0.00 33.53 4.85
438 439 1.957113 GCCACTGCTATTTTCCTGCCT 60.957 52.381 0.00 0.00 33.53 4.75
439 440 2.450476 CCACTGCTATTTTCCTGCCTT 58.550 47.619 0.00 0.00 0.00 4.35
440 441 2.165030 CCACTGCTATTTTCCTGCCTTG 59.835 50.000 0.00 0.00 0.00 3.61
441 442 3.084039 CACTGCTATTTTCCTGCCTTGA 58.916 45.455 0.00 0.00 0.00 3.02
442 443 3.084786 ACTGCTATTTTCCTGCCTTGAC 58.915 45.455 0.00 0.00 0.00 3.18
443 444 3.084039 CTGCTATTTTCCTGCCTTGACA 58.916 45.455 0.00 0.00 0.00 3.58
444 445 3.495331 TGCTATTTTCCTGCCTTGACAA 58.505 40.909 0.00 0.00 0.00 3.18
445 446 4.088634 TGCTATTTTCCTGCCTTGACAAT 58.911 39.130 0.00 0.00 0.00 2.71
446 447 4.527816 TGCTATTTTCCTGCCTTGACAATT 59.472 37.500 0.00 0.00 0.00 2.32
447 448 5.105063 GCTATTTTCCTGCCTTGACAATTC 58.895 41.667 0.00 0.00 0.00 2.17
448 449 5.336690 GCTATTTTCCTGCCTTGACAATTCA 60.337 40.000 0.00 0.00 0.00 2.57
449 450 5.549742 ATTTTCCTGCCTTGACAATTCAA 57.450 34.783 0.00 0.00 39.55 2.69
450 451 5.350504 TTTTCCTGCCTTGACAATTCAAA 57.649 34.783 0.00 0.00 41.34 2.69
451 452 5.350504 TTTCCTGCCTTGACAATTCAAAA 57.649 34.783 0.00 0.00 41.34 2.44
452 453 5.350504 TTCCTGCCTTGACAATTCAAAAA 57.649 34.783 0.00 0.00 41.34 1.94
494 495 1.069823 AGTAGCAGGCAATCCTCGATG 59.930 52.381 0.00 0.00 41.93 3.84
516 517 1.378514 TCCAATCGGAGGCAAAGGC 60.379 57.895 0.00 0.00 35.91 4.35
562 563 2.626840 GTGGATCAGGAAGCAGAAGTC 58.373 52.381 0.00 0.00 0.00 3.01
563 564 2.027745 GTGGATCAGGAAGCAGAAGTCA 60.028 50.000 0.00 0.00 0.00 3.41
585 586 1.606480 CGAGATGCTTGCCGATATGGT 60.606 52.381 0.00 0.00 41.21 3.55
604 605 2.115911 CGAGTGCTCCTACGCTCCT 61.116 63.158 0.00 0.00 42.91 3.69
605 606 0.814410 CGAGTGCTCCTACGCTCCTA 60.814 60.000 0.00 0.00 42.91 2.94
634 635 0.105709 TGCCCACCATAGAGATCCGA 60.106 55.000 0.00 0.00 0.00 4.55
656 657 3.793144 GCCGAAGCGCAGTTGAGG 61.793 66.667 11.47 5.02 0.00 3.86
657 658 3.793144 CCGAAGCGCAGTTGAGGC 61.793 66.667 11.47 0.00 0.00 4.70
658 659 2.740055 CGAAGCGCAGTTGAGGCT 60.740 61.111 11.47 0.00 39.01 4.58
659 660 1.446099 CGAAGCGCAGTTGAGGCTA 60.446 57.895 11.47 0.00 35.64 3.93
660 661 1.416813 CGAAGCGCAGTTGAGGCTAG 61.417 60.000 11.47 0.00 35.64 3.42
661 662 0.390472 GAAGCGCAGTTGAGGCTAGT 60.390 55.000 11.47 0.00 35.64 2.57
662 663 0.671781 AAGCGCAGTTGAGGCTAGTG 60.672 55.000 11.47 0.00 35.64 2.74
663 664 1.374758 GCGCAGTTGAGGCTAGTGT 60.375 57.895 0.30 0.00 0.00 3.55
664 665 0.108804 GCGCAGTTGAGGCTAGTGTA 60.109 55.000 0.30 0.00 0.00 2.90
665 666 1.671850 GCGCAGTTGAGGCTAGTGTAA 60.672 52.381 0.30 0.00 0.00 2.41
671 672 3.684788 AGTTGAGGCTAGTGTAATTTGCG 59.315 43.478 0.00 0.00 0.00 4.85
675 676 1.737793 GGCTAGTGTAATTTGCGCAGT 59.262 47.619 11.31 0.00 0.00 4.40
712 713 3.853831 TCTTGTGCATGCTTTGTATGG 57.146 42.857 20.33 1.44 0.00 2.74
722 723 2.235898 TGCTTTGTATGGATTTTGGGGC 59.764 45.455 0.00 0.00 0.00 5.80
723 724 2.419990 GCTTTGTATGGATTTTGGGGCC 60.420 50.000 0.00 0.00 0.00 5.80
724 725 1.479709 TTGTATGGATTTTGGGGCCG 58.520 50.000 0.00 0.00 0.00 6.13
725 726 0.396417 TGTATGGATTTTGGGGCCGG 60.396 55.000 0.00 0.00 0.00 6.13
795 826 6.546395 AGCTCTTATATCAGCGTTTTGTTTG 58.454 36.000 0.00 0.00 40.84 2.93
820 871 1.756538 GGACATATGTGGGCCCTTTTG 59.243 52.381 25.70 15.39 0.00 2.44
852 917 1.306825 AGGATGCTCTGCTCCCACT 60.307 57.895 0.00 0.00 31.49 4.00
853 918 1.145819 GGATGCTCTGCTCCCACTC 59.854 63.158 0.00 0.00 0.00 3.51
854 919 1.145819 GATGCTCTGCTCCCACTCC 59.854 63.158 0.00 0.00 0.00 3.85
919 985 3.597324 CTGTTCGCAAATGCTATACACG 58.403 45.455 3.63 0.00 39.32 4.49
925 991 3.245048 CGCAAATGCTATACACGATCACA 59.755 43.478 3.63 0.00 39.32 3.58
926 992 4.518217 GCAAATGCTATACACGATCACAC 58.482 43.478 0.00 0.00 38.21 3.82
927 993 4.751172 CAAATGCTATACACGATCACACG 58.249 43.478 0.00 0.00 39.31 4.49
928 994 2.485266 TGCTATACACGATCACACGG 57.515 50.000 0.00 0.00 37.61 4.94
962 1028 2.356665 TACTTTGCTTGCTTCCACCA 57.643 45.000 0.00 0.00 0.00 4.17
1018 1090 0.256464 ACCCACCTCCTCTAGAGTCG 59.744 60.000 18.42 8.54 41.47 4.18
1020 1092 1.104577 CCACCTCCTCTAGAGTCGGC 61.105 65.000 18.42 0.00 41.47 5.54
1468 1540 0.252103 TGTACCACCTCACCTCCTCC 60.252 60.000 0.00 0.00 0.00 4.30
1690 1762 0.600255 AGGTGACGTGCAAGCTACAC 60.600 55.000 9.26 9.26 34.62 2.90
1715 1787 2.542824 GCCGAGAAGAACTGCTAGCTAG 60.543 54.545 16.84 16.84 0.00 3.42
1735 1815 5.278512 GCTAGCTAGCGTATATATGCATGGA 60.279 44.000 28.89 9.38 40.60 3.41
1736 1816 5.798125 AGCTAGCGTATATATGCATGGAT 57.202 39.130 25.13 4.68 40.60 3.41
1820 1903 3.182967 TCATTTGCACGTTTGTTTGGAC 58.817 40.909 0.00 0.00 0.00 4.02
1829 1912 3.504520 ACGTTTGTTTGGACTTCAAGTGT 59.495 39.130 0.00 0.00 36.62 3.55
1830 1913 4.696402 ACGTTTGTTTGGACTTCAAGTGTA 59.304 37.500 0.00 0.00 36.62 2.90
1831 1914 5.355910 ACGTTTGTTTGGACTTCAAGTGTAT 59.644 36.000 0.00 0.00 36.62 2.29
1832 1915 5.681105 CGTTTGTTTGGACTTCAAGTGTATG 59.319 40.000 0.00 0.00 36.62 2.39
1833 1916 6.560711 GTTTGTTTGGACTTCAAGTGTATGT 58.439 36.000 0.00 0.00 36.62 2.29
1834 1917 5.749596 TGTTTGGACTTCAAGTGTATGTG 57.250 39.130 0.00 0.00 36.62 3.21
1835 1918 5.189928 TGTTTGGACTTCAAGTGTATGTGT 58.810 37.500 0.00 0.00 36.62 3.72
1836 1919 5.065859 TGTTTGGACTTCAAGTGTATGTGTG 59.934 40.000 0.00 0.00 36.62 3.82
1837 1920 4.415881 TGGACTTCAAGTGTATGTGTGT 57.584 40.909 0.00 0.00 0.00 3.72
1838 1921 4.126437 TGGACTTCAAGTGTATGTGTGTG 58.874 43.478 0.00 0.00 0.00 3.82
1839 1922 4.127171 GGACTTCAAGTGTATGTGTGTGT 58.873 43.478 0.00 0.00 0.00 3.72
1840 1923 4.024893 GGACTTCAAGTGTATGTGTGTGTG 60.025 45.833 0.00 0.00 0.00 3.82
1841 1924 4.513442 ACTTCAAGTGTATGTGTGTGTGT 58.487 39.130 0.00 0.00 0.00 3.72
1842 1925 4.332543 ACTTCAAGTGTATGTGTGTGTGTG 59.667 41.667 0.00 0.00 0.00 3.82
1843 1926 3.867857 TCAAGTGTATGTGTGTGTGTGT 58.132 40.909 0.00 0.00 0.00 3.72
1844 1927 3.620821 TCAAGTGTATGTGTGTGTGTGTG 59.379 43.478 0.00 0.00 0.00 3.82
1845 1928 3.260475 AGTGTATGTGTGTGTGTGTGT 57.740 42.857 0.00 0.00 0.00 3.72
1846 1929 2.935849 AGTGTATGTGTGTGTGTGTGTG 59.064 45.455 0.00 0.00 0.00 3.82
1847 1930 2.675844 GTGTATGTGTGTGTGTGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
1848 1931 2.675348 TGTATGTGTGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
1849 1932 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
1850 1933 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1851 1934 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1852 1935 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1853 1936 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1854 1937 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1855 1938 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1856 1939 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1857 1940 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1858 1941 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1859 1942 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1860 1943 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1861 1944 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1864 1947 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1881 2234 0.878416 GTGTGTGTGTGTGTGGTGTT 59.122 50.000 0.00 0.00 0.00 3.32
1894 2247 4.142049 TGTGTGGTGTTTTTCTTCCCATTC 60.142 41.667 0.00 0.00 0.00 2.67
1913 2266 1.955529 CTTTCACGCCCATCACGTCG 61.956 60.000 0.00 0.00 42.96 5.12
1918 2271 2.736682 CGCCCATCACGTCGGTTTC 61.737 63.158 0.00 0.00 0.00 2.78
1941 2294 0.034574 TTGAAGTGTGTGTGCTGGGT 60.035 50.000 0.00 0.00 0.00 4.51
2010 2363 6.405278 TCGATGCTATCTTCCTGATGTAAA 57.595 37.500 0.00 0.00 36.65 2.01
2043 2396 6.814146 GGTTTGATGTTGTTTCTTGGTTGTAA 59.186 34.615 0.00 0.00 0.00 2.41
2045 2398 6.142818 TGATGTTGTTTCTTGGTTGTAAGG 57.857 37.500 0.00 0.00 0.00 2.69
2046 2399 4.993029 TGTTGTTTCTTGGTTGTAAGGG 57.007 40.909 0.00 0.00 0.00 3.95
2051 2404 6.607004 TGTTTCTTGGTTGTAAGGGAAAAA 57.393 33.333 0.00 0.00 0.00 1.94
2052 2405 6.635755 TGTTTCTTGGTTGTAAGGGAAAAAG 58.364 36.000 0.00 0.00 0.00 2.27
2076 2429 4.935352 TTGATGCTAGCTTTTTGTTGGT 57.065 36.364 17.23 0.00 0.00 3.67
2112 2465 4.023291 GGGGAAAAGGTTTGATGCTATCA 58.977 43.478 0.00 0.00 37.55 2.15
2156 2517 2.042843 AGGGAGGCTAGACGGGTG 60.043 66.667 0.00 0.00 0.00 4.61
2157 2518 2.363925 GGGAGGCTAGACGGGTGT 60.364 66.667 0.00 0.00 0.00 4.16
2205 2566 3.625764 GTGGGTCGCATCTAAGCAATTAA 59.374 43.478 0.00 0.00 0.00 1.40
2243 2604 5.911378 TGTATCTTTGCATGGCATACAAA 57.089 34.783 21.32 21.32 38.76 2.83
2244 2605 5.649557 TGTATCTTTGCATGGCATACAAAC 58.350 37.500 19.38 12.38 38.76 2.93
2245 2606 4.804868 ATCTTTGCATGGCATACAAACA 57.195 36.364 19.38 11.79 38.76 2.83
2246 2607 4.597404 TCTTTGCATGGCATACAAACAA 57.403 36.364 19.38 9.74 38.76 2.83
2247 2608 4.953667 TCTTTGCATGGCATACAAACAAA 58.046 34.783 19.38 13.86 38.76 2.83
2248 2609 4.989797 TCTTTGCATGGCATACAAACAAAG 59.010 37.500 19.38 20.35 46.61 2.77
2249 2610 4.597404 TTGCATGGCATACAAACAAAGA 57.403 36.364 10.65 0.00 38.76 2.52
2250 2611 4.177165 TGCATGGCATACAAACAAAGAG 57.823 40.909 0.00 0.00 31.71 2.85
2251 2612 2.925563 GCATGGCATACAAACAAAGAGC 59.074 45.455 0.00 0.00 0.00 4.09
2252 2613 3.614630 GCATGGCATACAAACAAAGAGCA 60.615 43.478 0.00 0.00 0.00 4.26
2253 2614 4.558178 CATGGCATACAAACAAAGAGCAA 58.442 39.130 0.00 0.00 0.00 3.91
2254 2615 4.241590 TGGCATACAAACAAAGAGCAAG 57.758 40.909 0.00 0.00 0.00 4.01
2299 2660 1.457643 CCCCCGCCTCTGTATCTGA 60.458 63.158 0.00 0.00 0.00 3.27
2321 2682 1.755959 AGATGCATGCGGCCATTTTAA 59.244 42.857 14.09 0.00 43.89 1.52
2381 2742 1.278985 TGCCTGAATCCGTCATCTTGT 59.721 47.619 0.00 0.00 35.07 3.16
2394 2755 2.028203 TCATCTTGTCAACATCTGCCGA 60.028 45.455 0.00 0.00 0.00 5.54
2431 2792 1.152546 GAAGGGGTGCAAGTTGGGT 60.153 57.895 4.75 0.00 0.00 4.51
2460 2821 1.480137 CAGACCTCTCACCTAAGCCTG 59.520 57.143 0.00 0.00 0.00 4.85
2464 2825 1.205893 CCTCTCACCTAAGCCTGACAC 59.794 57.143 0.00 0.00 0.00 3.67
2544 2905 0.664466 CACTCACATGTGTCGTCGCT 60.664 55.000 24.63 0.18 33.61 4.93
2561 2922 1.071471 CTGCCGTCTTCCACTGGTT 59.929 57.895 0.00 0.00 0.00 3.67
2628 2992 0.321210 TCGACACCATGACGCCAAAT 60.321 50.000 0.00 0.00 35.65 2.32
2639 3003 2.452813 CGCCAAATGACGACCTCCG 61.453 63.158 0.00 0.00 45.44 4.63
2642 3006 2.106683 CAAATGACGACCTCCGCCC 61.107 63.158 0.00 0.00 43.32 6.13
2682 3047 2.672996 GCCATTGACGCCACCACT 60.673 61.111 0.00 0.00 0.00 4.00
2695 3060 1.900016 ACCACTACGTCAGCCGACA 60.900 57.895 0.20 0.00 42.74 4.35
2710 3075 0.677288 CGACAACCTCCACCTACACA 59.323 55.000 0.00 0.00 0.00 3.72
2733 3098 0.321564 CCATCTCCAAGCAACGGACA 60.322 55.000 0.00 0.00 0.00 4.02
2757 3122 0.193321 TCCATGCTAGGATAGGGCCA 59.807 55.000 6.18 0.00 39.70 5.36
2766 3131 2.609610 ATAGGGCCACACCACCGT 60.610 61.111 6.18 0.00 42.05 4.83
2896 3263 2.446036 CCCGGAAGACCTAGGGGG 60.446 72.222 14.81 9.00 40.18 5.40
2985 3353 2.903855 GGCATGGCCGGTCTCATG 60.904 66.667 21.79 21.79 39.62 3.07
2986 3354 2.124570 GCATGGCCGGTCTCATGT 60.125 61.111 24.52 0.91 41.83 3.21
2987 3355 1.750399 GCATGGCCGGTCTCATGTT 60.750 57.895 24.52 0.38 41.83 2.71
2988 3356 1.996786 GCATGGCCGGTCTCATGTTG 61.997 60.000 24.52 10.76 41.83 3.33
2989 3357 1.750399 ATGGCCGGTCTCATGTTGC 60.750 57.895 7.97 0.00 0.00 4.17
2990 3358 3.134127 GGCCGGTCTCATGTTGCC 61.134 66.667 1.90 0.00 0.00 4.52
2991 3359 3.499737 GCCGGTCTCATGTTGCCG 61.500 66.667 1.90 14.34 43.40 5.69
2992 3360 2.264480 CCGGTCTCATGTTGCCGA 59.736 61.111 20.03 0.00 46.33 5.54
2993 3361 2.100631 CCGGTCTCATGTTGCCGAC 61.101 63.158 20.03 8.82 46.33 4.79
2994 3362 1.374125 CGGTCTCATGTTGCCGACA 60.374 57.895 15.60 0.00 46.33 4.35
2995 3363 0.948623 CGGTCTCATGTTGCCGACAA 60.949 55.000 15.60 0.00 46.33 3.18
2996 3364 1.453155 GGTCTCATGTTGCCGACAAT 58.547 50.000 0.00 0.00 42.62 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.095853 GGTGTTTGTGTGTGTGAGACTG 59.904 50.000 0.00 0.00 0.00 3.51
1 2 2.356135 GGTGTTTGTGTGTGTGAGACT 58.644 47.619 0.00 0.00 0.00 3.24
2 3 1.400494 GGGTGTTTGTGTGTGTGAGAC 59.600 52.381 0.00 0.00 0.00 3.36
4 5 0.738389 GGGGTGTTTGTGTGTGTGAG 59.262 55.000 0.00 0.00 0.00 3.51
6 7 1.813192 GGGGGTGTTTGTGTGTGTG 59.187 57.895 0.00 0.00 0.00 3.82
7 8 4.347865 GGGGGTGTTTGTGTGTGT 57.652 55.556 0.00 0.00 0.00 3.72
21 22 1.227853 CTAAAAGGCGATCCGGGGG 60.228 63.158 0.00 0.00 37.47 5.40
22 23 1.227853 CCTAAAAGGCGATCCGGGG 60.228 63.158 0.00 0.00 37.47 5.73
23 24 0.107361 AACCTAAAAGGCGATCCGGG 60.107 55.000 0.00 0.00 39.63 5.73
24 25 1.746470 AAACCTAAAAGGCGATCCGG 58.254 50.000 0.00 0.00 39.63 5.14
25 26 4.186159 TCTAAAACCTAAAAGGCGATCCG 58.814 43.478 0.00 0.00 39.63 4.18
26 27 6.505044 TTTCTAAAACCTAAAAGGCGATCC 57.495 37.500 0.00 0.00 39.63 3.36
27 28 8.981724 ATTTTTCTAAAACCTAAAAGGCGATC 57.018 30.769 0.00 0.00 39.63 3.69
88 89 7.093377 ACACATAACACATGGGCATCTATTTTT 60.093 33.333 0.00 0.00 0.00 1.94
89 90 6.380846 ACACATAACACATGGGCATCTATTTT 59.619 34.615 0.00 0.00 0.00 1.82
90 91 5.893255 ACACATAACACATGGGCATCTATTT 59.107 36.000 0.00 0.00 0.00 1.40
91 92 5.448654 ACACATAACACATGGGCATCTATT 58.551 37.500 0.00 0.00 0.00 1.73
92 93 5.052693 ACACATAACACATGGGCATCTAT 57.947 39.130 0.00 0.00 0.00 1.98
93 94 4.502105 ACACATAACACATGGGCATCTA 57.498 40.909 0.00 0.00 0.00 1.98
94 95 3.370840 ACACATAACACATGGGCATCT 57.629 42.857 0.00 0.00 0.00 2.90
95 96 3.696051 AGAACACATAACACATGGGCATC 59.304 43.478 0.00 0.00 0.00 3.91
96 97 3.700538 AGAACACATAACACATGGGCAT 58.299 40.909 0.00 0.00 0.00 4.40
97 98 3.153369 AGAACACATAACACATGGGCA 57.847 42.857 0.00 0.00 0.00 5.36
98 99 4.261801 ACTAGAACACATAACACATGGGC 58.738 43.478 0.00 0.00 0.00 5.36
99 100 5.705441 ACAACTAGAACACATAACACATGGG 59.295 40.000 0.00 0.00 0.00 4.00
100 101 6.801539 ACAACTAGAACACATAACACATGG 57.198 37.500 0.00 0.00 0.00 3.66
101 102 8.443160 CCTAACAACTAGAACACATAACACATG 58.557 37.037 0.00 0.00 0.00 3.21
102 103 8.372459 TCCTAACAACTAGAACACATAACACAT 58.628 33.333 0.00 0.00 0.00 3.21
103 104 7.654520 GTCCTAACAACTAGAACACATAACACA 59.345 37.037 0.00 0.00 0.00 3.72
104 105 7.654520 TGTCCTAACAACTAGAACACATAACAC 59.345 37.037 0.00 0.00 30.70 3.32
105 106 7.728148 TGTCCTAACAACTAGAACACATAACA 58.272 34.615 0.00 0.00 30.70 2.41
106 107 8.597662 TTGTCCTAACAACTAGAACACATAAC 57.402 34.615 0.00 0.00 40.45 1.89
158 159 1.068250 CGGCGGCCTTTTCCAAAAA 59.932 52.632 18.34 0.00 0.00 1.94
159 160 2.128507 ACGGCGGCCTTTTCCAAAA 61.129 52.632 18.34 0.00 0.00 2.44
160 161 2.519780 ACGGCGGCCTTTTCCAAA 60.520 55.556 18.34 0.00 0.00 3.28
161 162 3.291383 CACGGCGGCCTTTTCCAA 61.291 61.111 18.34 0.00 0.00 3.53
162 163 4.572571 ACACGGCGGCCTTTTCCA 62.573 61.111 18.34 0.00 0.00 3.53
163 164 2.742710 GAAACACGGCGGCCTTTTCC 62.743 60.000 18.34 4.85 0.00 3.13
164 165 1.371267 GAAACACGGCGGCCTTTTC 60.371 57.895 18.34 17.37 0.00 2.29
165 166 2.725641 GAAACACGGCGGCCTTTT 59.274 55.556 18.34 13.04 0.00 2.27
166 167 3.656045 CGAAACACGGCGGCCTTT 61.656 61.111 18.34 10.95 38.46 3.11
175 176 1.971792 GGCCATTTTACCGAAACACG 58.028 50.000 0.00 0.00 42.18 4.49
183 184 3.676172 GCAAAAGTTACGGCCATTTTACC 59.324 43.478 2.24 0.00 0.00 2.85
184 185 4.299978 TGCAAAAGTTACGGCCATTTTAC 58.700 39.130 2.24 0.00 0.00 2.01
185 186 4.585955 TGCAAAAGTTACGGCCATTTTA 57.414 36.364 2.24 0.00 0.00 1.52
186 187 3.460857 TGCAAAAGTTACGGCCATTTT 57.539 38.095 2.24 0.00 0.00 1.82
187 188 3.676291 ATGCAAAAGTTACGGCCATTT 57.324 38.095 2.24 0.00 0.00 2.32
188 189 3.426963 CGTATGCAAAAGTTACGGCCATT 60.427 43.478 2.24 0.00 36.09 3.16
189 190 2.096819 CGTATGCAAAAGTTACGGCCAT 59.903 45.455 2.24 0.00 36.09 4.40
190 191 1.465387 CGTATGCAAAAGTTACGGCCA 59.535 47.619 2.24 0.00 36.09 5.36
191 192 1.733360 TCGTATGCAAAAGTTACGGCC 59.267 47.619 14.80 0.00 39.24 6.13
192 193 2.475022 GGTCGTATGCAAAAGTTACGGC 60.475 50.000 14.80 13.37 41.76 5.68
193 194 2.997986 AGGTCGTATGCAAAAGTTACGG 59.002 45.455 14.80 0.19 39.24 4.02
194 195 3.061697 GGAGGTCGTATGCAAAAGTTACG 59.938 47.826 9.91 9.91 39.92 3.18
195 196 3.061697 CGGAGGTCGTATGCAAAAGTTAC 59.938 47.826 0.00 0.00 0.00 2.50
196 197 3.056678 TCGGAGGTCGTATGCAAAAGTTA 60.057 43.478 0.00 0.00 40.32 2.24
197 198 2.073816 CGGAGGTCGTATGCAAAAGTT 58.926 47.619 0.00 0.00 0.00 2.66
198 199 1.274167 TCGGAGGTCGTATGCAAAAGT 59.726 47.619 0.00 0.00 40.32 2.66
199 200 2.004583 TCGGAGGTCGTATGCAAAAG 57.995 50.000 0.00 0.00 40.32 2.27
200 201 2.093921 TCATCGGAGGTCGTATGCAAAA 60.094 45.455 0.00 0.00 40.32 2.44
201 202 1.478916 TCATCGGAGGTCGTATGCAAA 59.521 47.619 0.00 0.00 40.32 3.68
202 203 1.107945 TCATCGGAGGTCGTATGCAA 58.892 50.000 0.00 0.00 40.32 4.08
203 204 1.107945 TTCATCGGAGGTCGTATGCA 58.892 50.000 0.00 0.00 40.32 3.96
204 205 2.218953 TTTCATCGGAGGTCGTATGC 57.781 50.000 0.00 0.00 40.32 3.14
205 206 4.181578 ACTTTTTCATCGGAGGTCGTATG 58.818 43.478 0.00 0.00 40.32 2.39
206 207 4.467198 ACTTTTTCATCGGAGGTCGTAT 57.533 40.909 0.00 0.00 40.32 3.06
207 208 3.947910 ACTTTTTCATCGGAGGTCGTA 57.052 42.857 0.00 0.00 40.32 3.43
208 209 2.833631 ACTTTTTCATCGGAGGTCGT 57.166 45.000 0.00 0.00 40.32 4.34
209 210 4.483476 AAAACTTTTTCATCGGAGGTCG 57.517 40.909 0.00 0.00 40.90 4.79
241 242 8.883731 CGGATGTAACTTTTCAAGTAGATGATT 58.116 33.333 0.00 0.00 41.91 2.57
242 243 8.258007 TCGGATGTAACTTTTCAAGTAGATGAT 58.742 33.333 0.00 0.00 41.91 2.45
243 244 7.608153 TCGGATGTAACTTTTCAAGTAGATGA 58.392 34.615 0.00 0.00 41.91 2.92
244 245 7.827819 TCGGATGTAACTTTTCAAGTAGATG 57.172 36.000 0.00 0.00 41.91 2.90
245 246 9.449719 AATTCGGATGTAACTTTTCAAGTAGAT 57.550 29.630 0.00 0.00 41.91 1.98
246 247 8.842358 AATTCGGATGTAACTTTTCAAGTAGA 57.158 30.769 0.00 0.00 41.91 2.59
247 248 8.717821 TGAATTCGGATGTAACTTTTCAAGTAG 58.282 33.333 0.04 0.00 41.91 2.57
248 249 8.610248 TGAATTCGGATGTAACTTTTCAAGTA 57.390 30.769 0.04 0.00 41.91 2.24
249 250 7.504924 TGAATTCGGATGTAACTTTTCAAGT 57.495 32.000 0.04 0.00 45.46 3.16
250 251 7.326063 GGTTGAATTCGGATGTAACTTTTCAAG 59.674 37.037 0.04 0.00 33.84 3.02
251 252 7.142680 GGTTGAATTCGGATGTAACTTTTCAA 58.857 34.615 0.04 0.00 31.50 2.69
252 253 6.566942 CGGTTGAATTCGGATGTAACTTTTCA 60.567 38.462 0.04 0.00 0.00 2.69
253 254 5.793457 CGGTTGAATTCGGATGTAACTTTTC 59.207 40.000 0.04 0.00 0.00 2.29
254 255 5.695818 CGGTTGAATTCGGATGTAACTTTT 58.304 37.500 0.04 0.00 0.00 2.27
255 256 5.291293 CGGTTGAATTCGGATGTAACTTT 57.709 39.130 0.04 0.00 0.00 2.66
256 257 4.939509 CGGTTGAATTCGGATGTAACTT 57.060 40.909 0.04 0.00 0.00 2.66
266 267 0.519961 GGTTCCACCGGTTGAATTCG 59.480 55.000 22.60 1.44 0.00 3.34
267 268 0.885879 GGGTTCCACCGGTTGAATTC 59.114 55.000 22.60 17.08 39.83 2.17
268 269 0.481128 AGGGTTCCACCGGTTGAATT 59.519 50.000 22.60 10.08 39.83 2.17
269 270 0.251165 CAGGGTTCCACCGGTTGAAT 60.251 55.000 22.60 5.83 39.83 2.57
270 271 1.149627 CAGGGTTCCACCGGTTGAA 59.850 57.895 16.69 16.69 39.83 2.69
271 272 1.637724 AACAGGGTTCCACCGGTTGA 61.638 55.000 2.97 3.46 45.22 3.18
272 273 1.152839 AACAGGGTTCCACCGGTTG 60.153 57.895 2.97 0.00 45.22 3.77
273 274 3.337930 AACAGGGTTCCACCGGTT 58.662 55.556 2.97 0.00 42.79 4.44
274 275 1.637724 TTCAACAGGGTTCCACCGGT 61.638 55.000 0.00 0.00 39.83 5.28
275 276 0.889186 CTTCAACAGGGTTCCACCGG 60.889 60.000 0.00 0.00 39.83 5.28
276 277 0.107831 TCTTCAACAGGGTTCCACCG 59.892 55.000 0.00 0.00 39.83 4.94
277 278 2.586648 ATCTTCAACAGGGTTCCACC 57.413 50.000 0.00 0.00 37.60 4.61
278 279 4.937201 AAAATCTTCAACAGGGTTCCAC 57.063 40.909 0.00 0.00 0.00 4.02
279 280 6.369629 TCTAAAAATCTTCAACAGGGTTCCA 58.630 36.000 0.00 0.00 0.00 3.53
280 281 6.894339 TCTAAAAATCTTCAACAGGGTTCC 57.106 37.500 0.00 0.00 0.00 3.62
281 282 8.029522 GGATTCTAAAAATCTTCAACAGGGTTC 58.970 37.037 0.00 0.00 0.00 3.62
282 283 7.039011 GGGATTCTAAAAATCTTCAACAGGGTT 60.039 37.037 0.00 0.00 0.00 4.11
283 284 6.437477 GGGATTCTAAAAATCTTCAACAGGGT 59.563 38.462 0.00 0.00 0.00 4.34
284 285 6.127338 GGGGATTCTAAAAATCTTCAACAGGG 60.127 42.308 0.00 0.00 0.00 4.45
285 286 6.437162 TGGGGATTCTAAAAATCTTCAACAGG 59.563 38.462 0.00 0.00 0.00 4.00
286 287 7.466746 TGGGGATTCTAAAAATCTTCAACAG 57.533 36.000 0.00 0.00 0.00 3.16
287 288 7.847711 TTGGGGATTCTAAAAATCTTCAACA 57.152 32.000 0.00 0.00 0.00 3.33
288 289 9.554395 TTTTTGGGGATTCTAAAAATCTTCAAC 57.446 29.630 0.00 0.00 30.79 3.18
289 290 9.554395 GTTTTTGGGGATTCTAAAAATCTTCAA 57.446 29.630 0.00 0.00 36.19 2.69
290 291 8.154203 GGTTTTTGGGGATTCTAAAAATCTTCA 58.846 33.333 0.00 0.00 36.19 3.02
291 292 8.375506 AGGTTTTTGGGGATTCTAAAAATCTTC 58.624 33.333 7.09 0.00 40.10 2.87
292 293 8.275187 AGGTTTTTGGGGATTCTAAAAATCTT 57.725 30.769 7.09 0.00 40.10 2.40
293 294 7.872061 AGGTTTTTGGGGATTCTAAAAATCT 57.128 32.000 7.09 7.09 38.94 2.40
294 295 9.431887 GTTAGGTTTTTGGGGATTCTAAAAATC 57.568 33.333 0.00 0.00 36.19 2.17
295 296 8.939932 TGTTAGGTTTTTGGGGATTCTAAAAAT 58.060 29.630 0.00 0.00 36.19 1.82
296 297 8.320338 TGTTAGGTTTTTGGGGATTCTAAAAA 57.680 30.769 0.00 0.00 32.64 1.94
297 298 7.785506 TCTGTTAGGTTTTTGGGGATTCTAAAA 59.214 33.333 0.00 0.00 0.00 1.52
298 299 7.299134 TCTGTTAGGTTTTTGGGGATTCTAAA 58.701 34.615 0.00 0.00 0.00 1.85
299 300 6.854578 TCTGTTAGGTTTTTGGGGATTCTAA 58.145 36.000 0.00 0.00 0.00 2.10
300 301 6.457159 TCTGTTAGGTTTTTGGGGATTCTA 57.543 37.500 0.00 0.00 0.00 2.10
301 302 5.333566 TCTGTTAGGTTTTTGGGGATTCT 57.666 39.130 0.00 0.00 0.00 2.40
302 303 6.605471 ATTCTGTTAGGTTTTTGGGGATTC 57.395 37.500 0.00 0.00 0.00 2.52
303 304 8.499288 TTTATTCTGTTAGGTTTTTGGGGATT 57.501 30.769 0.00 0.00 0.00 3.01
304 305 8.499288 TTTTATTCTGTTAGGTTTTTGGGGAT 57.501 30.769 0.00 0.00 0.00 3.85
305 306 7.916077 TTTTATTCTGTTAGGTTTTTGGGGA 57.084 32.000 0.00 0.00 0.00 4.81
313 314 9.269453 GCCTCGTATATTTTATTCTGTTAGGTT 57.731 33.333 0.00 0.00 0.00 3.50
314 315 8.648693 AGCCTCGTATATTTTATTCTGTTAGGT 58.351 33.333 0.00 0.00 0.00 3.08
315 316 9.490379 AAGCCTCGTATATTTTATTCTGTTAGG 57.510 33.333 0.00 0.00 0.00 2.69
329 330 8.908903 CCTTCAGATCTTATAAGCCTCGTATAT 58.091 37.037 7.67 0.00 0.00 0.86
330 331 8.107729 TCCTTCAGATCTTATAAGCCTCGTATA 58.892 37.037 7.67 0.00 0.00 1.47
331 332 6.948886 TCCTTCAGATCTTATAAGCCTCGTAT 59.051 38.462 7.67 0.00 0.00 3.06
332 333 6.304624 TCCTTCAGATCTTATAAGCCTCGTA 58.695 40.000 7.67 0.00 0.00 3.43
333 334 5.141182 TCCTTCAGATCTTATAAGCCTCGT 58.859 41.667 7.67 0.00 0.00 4.18
334 335 5.713792 TCCTTCAGATCTTATAAGCCTCG 57.286 43.478 7.67 4.66 0.00 4.63
335 336 8.916628 AAATTCCTTCAGATCTTATAAGCCTC 57.083 34.615 7.67 7.11 0.00 4.70
336 337 9.706529 AAAAATTCCTTCAGATCTTATAAGCCT 57.293 29.630 7.67 4.72 0.00 4.58
377 378 8.887717 TGCGCCATTGCTAATTTATTTATTTTT 58.112 25.926 4.18 0.00 35.36 1.94
378 379 8.334632 GTGCGCCATTGCTAATTTATTTATTTT 58.665 29.630 4.18 0.00 35.36 1.82
379 380 7.710475 AGTGCGCCATTGCTAATTTATTTATTT 59.290 29.630 4.18 0.00 35.36 1.40
380 381 7.209475 AGTGCGCCATTGCTAATTTATTTATT 58.791 30.769 4.18 0.00 35.36 1.40
381 382 6.748132 AGTGCGCCATTGCTAATTTATTTAT 58.252 32.000 4.18 0.00 35.36 1.40
382 383 6.142818 AGTGCGCCATTGCTAATTTATTTA 57.857 33.333 4.18 0.00 35.36 1.40
383 384 5.009854 AGTGCGCCATTGCTAATTTATTT 57.990 34.783 4.18 0.00 35.36 1.40
384 385 4.654091 AGTGCGCCATTGCTAATTTATT 57.346 36.364 4.18 0.00 35.36 1.40
385 386 4.821805 ACTAGTGCGCCATTGCTAATTTAT 59.178 37.500 4.18 0.00 35.36 1.40
386 387 4.035091 CACTAGTGCGCCATTGCTAATTTA 59.965 41.667 10.54 0.00 35.36 1.40
387 388 3.016736 ACTAGTGCGCCATTGCTAATTT 58.983 40.909 4.18 0.00 35.36 1.82
388 389 2.355756 CACTAGTGCGCCATTGCTAATT 59.644 45.455 10.54 0.00 35.36 1.40
389 390 1.942657 CACTAGTGCGCCATTGCTAAT 59.057 47.619 10.54 0.00 35.36 1.73
390 391 1.368641 CACTAGTGCGCCATTGCTAA 58.631 50.000 10.54 0.00 35.36 3.09
391 392 3.064079 CACTAGTGCGCCATTGCTA 57.936 52.632 10.54 0.00 35.36 3.49
392 393 3.895025 CACTAGTGCGCCATTGCT 58.105 55.556 10.54 0.00 35.36 3.91
402 403 2.753966 GGCGCACCATGCACTAGTG 61.754 63.158 18.93 18.93 45.36 2.74
403 404 2.436646 GGCGCACCATGCACTAGT 60.437 61.111 10.83 0.00 45.36 2.57
404 405 2.436469 TGGCGCACCATGCACTAG 60.436 61.111 10.83 0.00 45.36 2.57
418 419 0.457443 GGCAGGAAAATAGCAGTGGC 59.543 55.000 0.00 0.00 41.61 5.01
419 420 2.134789 AGGCAGGAAAATAGCAGTGG 57.865 50.000 0.00 0.00 0.00 4.00
420 421 3.084039 TCAAGGCAGGAAAATAGCAGTG 58.916 45.455 0.00 0.00 0.00 3.66
421 422 3.084786 GTCAAGGCAGGAAAATAGCAGT 58.915 45.455 0.00 0.00 0.00 4.40
422 423 3.084039 TGTCAAGGCAGGAAAATAGCAG 58.916 45.455 0.00 0.00 0.00 4.24
423 424 3.153369 TGTCAAGGCAGGAAAATAGCA 57.847 42.857 0.00 0.00 0.00 3.49
424 425 4.725790 ATTGTCAAGGCAGGAAAATAGC 57.274 40.909 0.00 0.00 0.00 2.97
425 426 6.271488 TGAATTGTCAAGGCAGGAAAATAG 57.729 37.500 0.00 0.00 0.00 1.73
426 427 6.662865 TTGAATTGTCAAGGCAGGAAAATA 57.337 33.333 0.00 0.00 38.88 1.40
427 428 5.549742 TTGAATTGTCAAGGCAGGAAAAT 57.450 34.783 0.00 0.00 38.88 1.82
428 429 5.350504 TTTGAATTGTCAAGGCAGGAAAA 57.649 34.783 0.00 0.00 44.49 2.29
429 430 5.350504 TTTTGAATTGTCAAGGCAGGAAA 57.649 34.783 0.00 0.00 44.49 3.13
430 431 5.350504 TTTTTGAATTGTCAAGGCAGGAA 57.649 34.783 0.00 0.00 44.49 3.36
457 458 9.801873 GCCTGCTACTTCATTATTATTTTTCAA 57.198 29.630 0.00 0.00 0.00 2.69
458 459 8.965819 TGCCTGCTACTTCATTATTATTTTTCA 58.034 29.630 0.00 0.00 0.00 2.69
459 460 9.801873 TTGCCTGCTACTTCATTATTATTTTTC 57.198 29.630 0.00 0.00 0.00 2.29
461 462 9.971922 GATTGCCTGCTACTTCATTATTATTTT 57.028 29.630 0.00 0.00 0.00 1.82
462 463 8.579863 GGATTGCCTGCTACTTCATTATTATTT 58.420 33.333 0.00 0.00 0.00 1.40
463 464 7.946776 AGGATTGCCTGCTACTTCATTATTATT 59.053 33.333 0.00 0.00 44.90 1.40
464 465 7.465116 AGGATTGCCTGCTACTTCATTATTAT 58.535 34.615 0.00 0.00 44.90 1.28
465 466 6.841601 AGGATTGCCTGCTACTTCATTATTA 58.158 36.000 0.00 0.00 44.90 0.98
466 467 5.699143 AGGATTGCCTGCTACTTCATTATT 58.301 37.500 0.00 0.00 44.90 1.40
467 468 5.316158 AGGATTGCCTGCTACTTCATTAT 57.684 39.130 0.00 0.00 44.90 1.28
468 469 4.778213 AGGATTGCCTGCTACTTCATTA 57.222 40.909 0.00 0.00 44.90 1.90
469 470 3.659183 AGGATTGCCTGCTACTTCATT 57.341 42.857 0.00 0.00 44.90 2.57
562 563 1.570813 TATCGGCAAGCATCTCGTTG 58.429 50.000 0.00 0.00 0.00 4.10
563 564 2.138320 CATATCGGCAAGCATCTCGTT 58.862 47.619 0.00 0.00 0.00 3.85
585 586 2.113433 GGAGCGTAGGAGCACTCGA 61.113 63.158 0.00 0.00 40.15 4.04
590 591 2.552591 GGTAGATAGGAGCGTAGGAGCA 60.553 54.545 0.00 0.00 40.15 4.26
652 653 2.006888 GCGCAAATTACACTAGCCTCA 58.993 47.619 0.30 0.00 0.00 3.86
653 654 2.006888 TGCGCAAATTACACTAGCCTC 58.993 47.619 8.16 0.00 0.00 4.70
654 655 2.009774 CTGCGCAAATTACACTAGCCT 58.990 47.619 13.05 0.00 0.00 4.58
655 656 1.737793 ACTGCGCAAATTACACTAGCC 59.262 47.619 13.05 0.00 0.00 3.93
656 657 3.541516 CGTACTGCGCAAATTACACTAGC 60.542 47.826 13.05 0.00 0.00 3.42
657 658 4.164802 CGTACTGCGCAAATTACACTAG 57.835 45.455 13.05 0.00 0.00 2.57
696 697 4.330620 CCAAAATCCATACAAAGCATGCAC 59.669 41.667 21.98 0.00 0.00 4.57
712 713 1.188871 TTTCACCCGGCCCCAAAATC 61.189 55.000 0.00 0.00 0.00 2.17
722 723 4.486090 CGAGTATCTCATATTTCACCCGG 58.514 47.826 0.00 0.00 0.00 5.73
723 724 4.217767 TCCGAGTATCTCATATTTCACCCG 59.782 45.833 0.00 0.00 0.00 5.28
724 725 5.723672 TCCGAGTATCTCATATTTCACCC 57.276 43.478 0.00 0.00 0.00 4.61
725 726 5.578727 GCATCCGAGTATCTCATATTTCACC 59.421 44.000 0.00 0.00 0.00 4.02
775 806 6.747280 CCTTCCAAACAAAACGCTGATATAAG 59.253 38.462 0.00 0.00 0.00 1.73
782 813 1.407258 TCCCTTCCAAACAAAACGCTG 59.593 47.619 0.00 0.00 0.00 5.18
795 826 0.178990 GGCCCACATATGTCCCTTCC 60.179 60.000 5.07 0.00 0.00 3.46
820 871 1.599542 GCATCCTCGTCTTGCCATAAC 59.400 52.381 0.00 0.00 0.00 1.89
852 917 2.046292 TGTCATTCACACTCTGGTGGA 58.954 47.619 1.29 0.00 46.85 4.02
853 918 2.549064 TGTCATTCACACTCTGGTGG 57.451 50.000 1.29 0.00 46.85 4.61
919 985 1.445582 GTGGTCCGTCCGTGTGATC 60.446 63.158 0.00 0.00 39.52 2.92
962 1028 1.580658 TGGGTAGGATCTCTGGATGGT 59.419 52.381 0.00 0.00 31.46 3.55
1018 1090 0.386838 GGAGTTTGCTGCCATATGCC 59.613 55.000 0.00 0.00 40.16 4.40
1020 1092 2.646930 TCAGGAGTTTGCTGCCATATG 58.353 47.619 0.00 0.00 35.65 1.78
1363 1435 4.124351 TCGAACCTGTAGGCGGCG 62.124 66.667 0.51 0.51 39.32 6.46
1468 1540 4.394712 ACGAAGGCGCCTTGGGAG 62.395 66.667 41.89 31.40 42.48 4.30
1562 1634 1.911269 TGTAGCTCACCTTGCGGGA 60.911 57.895 0.00 0.00 38.76 5.14
1649 1721 2.737376 GAAGACGACGGTGGTGGC 60.737 66.667 0.00 0.00 0.00 5.01
1690 1762 0.321122 AGCAGTTCTTCTCGGCCTTG 60.321 55.000 0.00 0.00 0.00 3.61
1715 1787 7.814587 TCAATATCCATGCATATATACGCTAGC 59.185 37.037 4.06 4.06 0.00 3.42
1718 1798 8.370182 TGATCAATATCCATGCATATATACGCT 58.630 33.333 0.00 0.00 0.00 5.07
1725 1805 7.555195 ACGAACATGATCAATATCCATGCATAT 59.445 33.333 0.00 0.00 30.27 1.78
1735 1815 6.150976 ACACAAACCACGAACATGATCAATAT 59.849 34.615 0.00 0.00 0.00 1.28
1736 1816 5.471797 ACACAAACCACGAACATGATCAATA 59.528 36.000 0.00 0.00 0.00 1.90
1807 1890 3.504520 ACACTTGAAGTCCAAACAAACGT 59.495 39.130 0.00 0.00 33.76 3.99
1820 1903 4.332543 ACACACACACACATACACTTGAAG 59.667 41.667 0.00 0.00 0.00 3.02
1829 1912 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
1830 1913 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
1831 1914 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1832 1915 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1833 1916 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1834 1917 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1835 1918 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1836 1919 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1837 1920 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1838 1921 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1839 1922 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1840 1923 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1841 1924 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1842 1925 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1843 1926 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1844 1927 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1845 1928 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1846 1929 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1847 1930 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1848 1931 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1849 1932 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1850 1933 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1851 1934 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1852 1935 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1853 1936 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1854 1937 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1855 1938 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1856 1939 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1857 1940 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1858 1941 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
1859 1942 0.250510 ACCACACACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
1860 1943 0.167908 CACCACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
1861 1944 0.250510 ACACCACACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
1864 1947 2.715737 AAAACACCACACACACACAC 57.284 45.000 0.00 0.00 0.00 3.82
1881 2234 3.005367 GGCGTGAAAGAATGGGAAGAAAA 59.995 43.478 0.00 0.00 0.00 2.29
1894 2247 1.787847 GACGTGATGGGCGTGAAAG 59.212 57.895 0.00 0.00 43.04 2.62
1913 2266 4.035017 CACACACACTTCAAATCGAAACC 58.965 43.478 0.00 0.00 31.71 3.27
1918 2271 2.602933 CCAGCACACACACTTCAAATCG 60.603 50.000 0.00 0.00 0.00 3.34
1982 2335 7.445121 ACATCAGGAAGATAGCATCGAAAATA 58.555 34.615 0.00 0.00 34.43 1.40
2010 2363 6.935167 AGAAACAACATCAAACCTGTTCTTT 58.065 32.000 0.00 0.00 34.69 2.52
2043 2396 5.267587 AGCTAGCATCAAATCTTTTTCCCT 58.732 37.500 18.83 0.00 0.00 4.20
2045 2398 7.895975 AAAAGCTAGCATCAAATCTTTTTCC 57.104 32.000 18.83 0.00 31.97 3.13
2046 2399 8.768019 ACAAAAAGCTAGCATCAAATCTTTTTC 58.232 29.630 18.83 0.00 39.94 2.29
2051 2404 6.161381 CCAACAAAAAGCTAGCATCAAATCT 58.839 36.000 18.83 0.00 0.00 2.40
2052 2405 5.928264 ACCAACAAAAAGCTAGCATCAAATC 59.072 36.000 18.83 0.00 0.00 2.17
2112 2465 2.745482 GCAGTGTGGATGCTCATGAGAT 60.745 50.000 27.04 15.87 40.59 2.75
2141 2502 0.682209 TGTACACCCGTCTAGCCTCC 60.682 60.000 0.00 0.00 0.00 4.30
2189 2550 5.397534 GCTGAACATTAATTGCTTAGATGCG 59.602 40.000 0.00 0.00 35.36 4.73
2205 2566 7.310664 CAAAGATACAACTGAATGCTGAACAT 58.689 34.615 0.00 0.00 42.30 2.71
2285 2646 2.351641 GCATCTCTCAGATACAGAGGCG 60.352 54.545 0.00 0.00 38.39 5.52
2293 2654 1.337541 GCCGCATGCATCTCTCAGATA 60.338 52.381 19.57 0.00 40.77 1.98
2299 2660 0.754217 AAATGGCCGCATGCATCTCT 60.754 50.000 19.57 0.00 43.89 3.10
2381 2742 2.388735 AGGAGTATCGGCAGATGTTGA 58.611 47.619 9.82 0.00 37.70 3.18
2394 2755 6.012157 CCCCTTCATCATTTGGATAGGAGTAT 60.012 42.308 0.00 0.00 34.78 2.12
2431 2792 2.457598 GTGAGAGGTCTGGGTATGTGA 58.542 52.381 0.00 0.00 0.00 3.58
2460 2821 0.393132 GGCCTCCAGCTTTAGGTGTC 60.393 60.000 11.82 0.95 41.60 3.67
2464 2825 2.597903 GGGGCCTCCAGCTTTAGG 59.402 66.667 0.84 6.73 43.05 2.69
2544 2905 1.070786 GAACCAGTGGAAGACGGCA 59.929 57.895 18.40 0.00 0.00 5.69
2561 2922 3.773667 ACCTCAATCTGCTCTGAAGATGA 59.226 43.478 0.00 0.00 34.59 2.92
2594 2955 3.461773 CGATGGCGGAGGACCTGT 61.462 66.667 0.00 0.00 0.00 4.00
2628 2992 3.770040 CATGGGCGGAGGTCGTCA 61.770 66.667 0.00 0.00 46.81 4.35
2639 3003 3.512516 GACAAGGCTCGCATGGGC 61.513 66.667 4.59 0.00 0.00 5.36
2642 3006 3.494378 CCTGACAAGGCTCGCATG 58.506 61.111 0.00 0.00 36.56 4.06
2695 3060 1.697982 GGACTTGTGTAGGTGGAGGTT 59.302 52.381 0.00 0.00 0.00 3.50
2710 3075 1.611673 CCGTTGCTTGGAGATGGACTT 60.612 52.381 0.00 0.00 0.00 3.01
2733 3098 4.166919 GGCCCTATCCTAGCATGGATTTAT 59.833 45.833 14.34 0.00 43.79 1.40
2813 3178 1.073199 CCCTTCTTGAAGGTGCCGT 59.927 57.895 23.12 0.00 38.28 5.68
2896 3263 4.098807 GGACTGATCTCCTCACTTAACCTC 59.901 50.000 0.00 0.00 0.00 3.85
2901 3268 5.141182 GGTATGGACTGATCTCCTCACTTA 58.859 45.833 2.92 0.00 0.00 2.24
2972 3340 2.359850 GCAACATGAGACCGGCCA 60.360 61.111 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.