>input_sequence_63510
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-------------------------------CCCACCTCCTCTAGAGTCGGCATATGGCAGCAAACTCCTGATAAACACC
ACCTCCACCGAGAAGAAAAGCCTCCGGCCGGCGGCAACAATGTGCGGCCGCGACGACGACTGCTACCTGACGAGGGATGA
AGTCAAGTACCTCTTCATCTGCTTCGGCGTCGTCGCGGTCGTGGTCCTCCTCGCCGTCCTCCTGGCCGCCTTCGTCTACC
TCCGCCACGTCACCATCACCGTGGAGGACGCCTCGCTCACCAGGTTCGACCTGCTCACCTCCCCGGTGACGGGGATCGCC
TACAACCTCTCGCTCACCCTCAAGGTCCGCAACCCCAACTGGGCGATGAGCATGAAGAACGTGGAGCCGTTCGTCGCCGC
CTACAGGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCGCCGCCACGGGCGACAAGCACCCCGCCGGCGCCACCAGGG
TGTACCACCTCACCTCCTCCTCCCAAGGCGCCTTCGTGTCGCTGGGCAGCGCCGGCGAGCAGGAGTACAAGAAGGAGAGC
AAGACGGGGACGTTCGACGTGGAGGTGGCGCTGTCCCGCAAGGTGAGCTACACGGCGCGCTACACCAAGTGCAAGATCGA
GGCCGTCTGCCCGCTCAAGCTGCAGCTCGTCAAGCCCGACGCCACCACCGTCGTCTTCCAGAAGGTGACGTGCAAGCTAC
ACAAGGCCGAGAAGAACTGCTAGCTAG--------CTAGCGTATATATGCATGGATATTGATCATGTTCGTGGTTT-GTG
TGGCCACGATCATCATTAATTACTTTTATTATTCCATCA--TCATTTGCACGTTTGTTTGGACTTCAAGTGTATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GTGTTTTTCTT
CCCATTCTTTCACGCCCATCACGTCGGTTTCGATTTGAAGTGTGTGTGCTGGGTTTTTTTCGTTAATTATTTGTTGTGTA
AGATGTAATAATAATATTTTCGATGCTAT---------------------------------------------------
--------------------------------------------------------------------------------
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----
>chr1A_1_TraesCS1A01G379400
CAGTCTCACACACACAAACACCCCCCGGATCGCCTTTTAGGTTTTAGAAAAATAAAAGAAAATAATAAAAGATTCAAAAA
AAGTTCAAAAAAATAGATGCCCATGTGTTATGTGTTCTAGTTGTTAGGACAATTAATAAACATGGATTTTGAATTTATTT
TTTGGAAAAGGCCGCCGTGTTTCGGTAAAATGGCCGTAACTTTTGCATACGACCTCCGATGAAAAAGTTTTTTATATGAA
AAATCATCTACTTGAAAAGTTACATCCGAATTCAACCGGTGGAACCCTGTTGAAGATTTTTAGAATCCCCAAAAACCTAA
CAGAATAAAATATACGAGGCTTATAAGATCTGAAGGAATTTTTTTTCAAAAAAAGCAAAAAATAAATAAATTAGCAATGG
CGCACTAGTGCATGGTGCGCCACTGCTATTTTCCTGCCTTGACAATTCAAAAAAAAATTGAAAAATAATAATGAAGTAGC
AGGCAATCCTCGATGCCCTCCAATCGGAGGCAAAGGCGGAGGCCAACCGCCGTATCCTCCAGGTGGATCAGGAAGCAGAA
GTCAACGAGATGCTTGCCGATATGGTCGAGTGCTCCTACGCTCCTATCTACCCGGTGCCCACCATAGAGATCCGACGACG
CCGAAGCGCAGTTGAGGCTAGTGTAATTTGCGCAGTACGCAAAATATTTTTTTCTTGTGCATGCTTTGTATGGATTTTGG
GGCCGGGTGAAATATGAGATACTCGGATGCATAGTAAAAAATATGAG------------------------------GTG
TAGCTCTTATATCAGCGTTTTGTTTGGAAGGGA--------------------CATATGTGGGCCCTTTTGTTATGGCAA
GACGAG--------------GATGCTCTGCTCCCACTCCACCAGAGTGTGAATGACAAAAGCAAATTCACATGGCA-GTT
GAGCTGTTCGCAAATGCTATACACGATCACACGGACGGACCACGTAGATACTTTGCTTGCTTCCACCACCATCCAGAGAT
CCTACCCACAGGCT------CCTGATAAACACCCACCTCCTCTAGAGTCGGCATATGGCAGCAAACTCCTGATAAACACC
ACCTCCACCGAGAAGAAAAGCCTCCGGCCGGCGGCAACAATGTGCGGCCGCGACGACGACTGCTACCTGACGAGGGATGA
AGTCAAGTACCTCTTCATCTGCTTCGGCGTCGTCGCGGTCGTGGTCCTCCTCGCCGTCCTCCTGGCCGCCTTCGTCTACC
TCCGCCACGTCACCATCACCGTGGAGGACGCCTCGCTCACCAGGTTCGACCTGCTCACCTCCCCGGTGACGGGGATCGCC
TACAACCTCTCGCTCACCCTCAAGGTCCGCAACCCCAACTGGGCGATGAGCATGAAGAACGTGGAGCCGTTCGTCGCCGC
CTACAGGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCGCCGCCACGGGCGACAAGCACCCCGCCGGCGCCACCAGGG
TGTACCACCTCACCTCCTCCTCCCAAGGCGCCTTCGTGTCGCTGGGCAGCGCCGGCGAGCAGGAGTACAAGAAGGAGAGC
AAGACGGGGACGTTCGACGTGGAGGTGGCGCTGTCCCGCAAGGTGAGCTACACGGCGCGCTACACCAAGTGCAAGATCGA
GGCCGTCTGCCCGCTCAAGCTGCAGCTCGTCAAGCCCGACGCCACCACCGTCGTCTTCCAGAAGGTGACGTGCAAGCTAC
ACAAGGCCGAGAAGAACTGCTAGCTAG--------CTAGCGTATATATGCATGGATATTGATCATGTTCGTGGTTT-GTG
TGGCCACGATCATCATTAATTACTTTTATTATTCCATCA--TCATTTGCACGTTTGTTTGGACTTCAAGTGTATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GTGTTTTTCTT
CCCATTCTTTCACGCCCATCACGTCGGTTTCGATTTGAAGTGTGTGTGCTGGGTTTTTTTCGTTAATTATTTGTTGTGTA
AGATGTAATAATAATATTTTCGATGCTATCTTCCTGATGTAAAAAGAACAGGTTTGATGTTGTTTCTTGGTTGTAAGGGA
AAAAGATTTGATGCTAGCTTTTTGTTGGTTCAACATTCAAGGGGGGAAAAGGTTTGATGCTATCATCTC--------ATG
AGCATCCACACTGCTTGTGAGGGAGGCTAGACGGGTGTACACGCAACGTGTATGCCGCGGCCCGTGGGTCGCATCTAAGC
AATTAATGTTCAGCATTCAGTTGTATCTTTGCATGGCATACAAACAAAGAGCAAGTTTTTTTTTTTGAAAAGGAGGATGA
CCCCCCGCCTCTGTATCTGAGAGATGCATGCGGCCATTTTAATAATTATTCTCGAGGACCTTATAAAATAAAACAATAGT
ATGCCTGAATCCGTCATCTTGTCAACATCTGCCGATACTCCTATCCAAATGATGAAGGGGTGCAAGTTGGGTCACATACC
CAGACCTCTCACCTAAGCCTGACACCTAAAGCTGGAGGCCCCGACCGAGCCATCTGCCAGGTCCGGGGCTCAAACCGGTC
CGACGCACTCACATGTGTCGTCGCTGCCGTCTTCCACTGGTTCATCTTCAGAGCAGATTGAGGTGACAACCTTGACAGGT
CCTCCGCCATCGAC---ACCATGACGCCAAATGACGACCTCCGCCCATGCGAGCCTTGTCAGGT-CCCCGCCATTGACGC
CACCACTACGTCAGCCGACAACCTCCACCTACACAAGTCCATCTCCAAGCAACGGACATAAATCCATGCTAGGATAGGGC
CACACCACCGTCGTCGCCCACCACCCACAAGCGCCACCCAACCCCAAGGTTCCCAAAACGGCACCTTCAAGAAGGGAACG
ACGCCGTGAGCGCCGCCGCTGCCCA--ACAAAGTTAGGGCTTTCGCCCGGAAGACCTAGGGGGAGGTT-AAGTGAGGAGA
TCAGTCCATACCGACGCCTCCAAGGAGGGGAACAACGCCCTCAGGCGTCGCCGTCGGCATGGCCGGTCTCATGTTGCCGA
CAAT
>chr1D_478
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------AGC
AGGCAATCCTCGATTCCCTCCAATCGGAGGCAAAGGAGGAGGCCAACCGCCGTATCCTCCAGGTGGATCAGGAAGCAGAA
GTTGACGAGATGCTTGCCGATATGGACGAGCGCTCCTACGCTCCCGTCTACCCGGTGCCCACCATAGAGATCCGGCGACG
CCGAAGCGCAGT--------------TTTGCACAGCACGCAGA--ATTTTTTTCTTTTGCATGCTTTGTATGAATTTTGG
GG----GTGAAATATGAGATACTCGGATGCATAGTAAAAAATATGAGGTGTGACCGGTAACTGCCCACGGACTGCCAGTG
TAGCTTTTATATTAGCGTTTTGTTTCGAAGGGACCCTGAGACGCAGCTGGACCCATATGTGGGCCCTTTTCTTATGGCAA
GACGAGCGACACACATGTCGGATGCTCTGCTCCT-----ACCAGAGTGTGAGTGACAAAAGCAAATTCACATGGCA-GTT
GAGCTGTTCGCAAATGCTATACACAATCAC----ACGGACCACGTAGATACTTTGCTTGCTTCCACCCCCATCCAGAGAT
TCTACCCACAGGCTCTAGTCCCTGATAAACACCCACCTCCTCTAGAGTCAGTATATGGCAGCAAACTCCTGATAAACACC
ACCTCCGCCGAGAAGAAAAGCCTCCGGCCGGCGGCAACAATGTGCGGCCGCGACGACGACTGCTACCTGACGAGGGACGA
AGTCAAGTACCTCTTCATCTGCTTCGGCGTCGTCGCGGTCGTGGTCCTCCTCGCCGTCCTCCTGGCCGCCTTCGTCTACC
TCCGCCACGTCACCATCACCGTGGAGGACGCCTCGCTCACCAGGTTCGACCTGCTCACCTCCCCGGTGACGGGGATCGCC
TACAACCTCTCGCTCACCCTCAAGGTCCGCAACCCCAACTGGGCCATGAGCATGAAGAACGTGGAGCCCTTCGTGGCCGC
CTACAGGTTCGACGGCCAGCAGTTCGACCGCGTGCAGATCGCCGCCACGGGCGACAAGCACCCCGCCGGCGCCACCAGGG
TGTACCACCTCACCTCCTCGTCCCAAGGCGCCTTCGTGTCCCTGGGCAGCGCCGGCGAGCAGGAGTACAAGAAGGAGAGC
AAGACGGGGACGTTCGACGTCGAGGTGGCGCTGACCCGCAAGGTGAGCTACACGGCCCGCTACACCAAGTGCAAGATCGA
GGCCGTCTGCCCGCTCAAGCTGCAGCTCGTCAAGCCCGACTCCACCACCGTCGTCTTCCAGAAGGTGAAGTGCAAGCTCC
AAAAGGCCGAGAAGAACTGCTAGCTACTAGCG-------------TATGCATGG--ATTGATCATGTTCGTGGTTTTGTG
TGGCGTCCATCATCATTAATTACTTTTG-TATTCCATCACATCATTTGCCCGTTTGTTTGGAATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTTTCTT
CCCATTTTTTCACGCCCATCACGTCTGTTTTGATTTGAAGTGTGTGTGCTGGGGTTTTTTCATTAATTATTTGTTGTGTA
AGATGTAATAATAAGATTTTCGATGCTATCTTCCTGATGTAA-AAGAACAGGTTTGATGTTGTTTCTTGGTTGTAGGAAA
AAATTATTTGATGCTAGCTTTTTGTTGGATCAACGTTCAAGGGGGGGAAAGGTTTGATGCTATCTTCTCATGAGCTGATG
AGCATCCACACTGCTTGTGAGTGAGGCTAGACGGGT--ACACGCAACGTGTATGCCGCGGCCCGTGGGTGGCATCTAAGC
AATTATTGTTCAGCATTCAGTTGTATCTTTGCATGGCATACAA-------------------------------------
--------------------------------------------------------------------------------
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----
>chr1B_836
--------------------------------------------------------------------------------
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-----G--------------GATGCTCTGCTCCCAC-----CAGAGTGTGGATAACAAAAGCAAATTCACATGCCATGTT
GAGCTGTTCGCAGATGCTATACACAATCAC----ACGGGCCACGTAGATACTTTGCTTGCTTCCATCCCCATCCAGAGAT
CCTACCCACAGGCCACAG--CCTGATAAACACCCACCTCCTCTGGAGTCAGTATATGGCAGCAAACTCCTGATAAACGCC
GTCTCCACCGAGAAGAAAAGCCTCCGGCCGGCGGCAACAATGTGTGGCCGCGACGACGACTGCTACCTGACGAGGGATGA
AGTCAAGTACCTCTTCATCTGCTTCGGCGTCGTCGCGGTCGTGGTCCTCCTCGCCGTCCTCCTGGCCGCCTTCGTCTACC
TCCGCCACGTCACCATCACCGTCGAGGACGCCTCGCTCACCAGGTTCGACCTGCTCACCTCCCCGGTGACGGGGATCGCC
TACAACCTCTCGCTCACCCTCAAGGTCCGCAACCCCAACTGGGCGATGAGCATGAAGAACGTGGAGCCGTTCGTGGCCGC
CTATCGGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCGCCGCCACGGGCGACAAGCACCCCGCCGGCGCCACCAGGG
TGTACCACCTCACCTCCTCGTCCCAAGGCGCCTTCGTGTCCCTGGGCAGCGCCGGCGAGCAGGAGTACACGAAGGAGAGC
AAGACCGGGACGTTCGACGTGGAGGTGGCGCTGACCCGCAAGGTGAGCTACACGGCGCGCTACACCAAGTGCAAGATCGA
GGCCGTGTGCCCGCTCAAGCTGCAGCTTGTCAAGCCGGACTCCACCACCGTCGTCTTCCAGAAGGTGACGTGCAAGCTCC
AGAAGGCCGAGAAGAACTGCTAGCTAATTACTCTACTGGTGTATGCATGCATGG--ATTGATCATGTTCGTGGTTT-GTG
TGGCCACGATCATCATTAATTACTTTTATTATTCCATCACACCATTTGCCCGTTCGTTTGGAATTCAAGTGG--------
------------------------GTTTGTGTGTGTGTG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GTGT-------
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----
>chr2D_1118
--------------------------------------------------------------------------------
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--------------------------------------------------------------------GACCAGGGAGAA
CATCAAGTACGGCTGCATCTGCTTCGGCGTCCTCGCCGTCCTGGCCGTCTTTGCCGTCCTCCTGGCCGCCTACGCCTTCC
TCCGCCACGTCAGCATCACCGTGGAGGACGCGTCGCTGACCAGGTTCGCACTGCTGACCACCCCGGTGACGGCGCTGGCG
TACAATCTCTCGCTGACTCTCAACGTCCGCAACCCGAACTGGGCGATGAGCATCAAGAACACGGAGCCGTTCGAGGCCGC
CTACAAGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCTCTGACAAGGGCGACAAGCATCCCCCTCGGAAGACCATGG
TTTACCGCCTTGACTCGGGATCAGACGGCGCCCTCGTGTCGCTGGGCAACGCCGGCGTGGTGGAGTACAAGGAGGAGAAC
GAGACAGGTGTGTTCGAGGTGGAGGTGGCGCTGACCCGCAAAGTGAGCTACACAGCGCGCTACACCAAGTGCAAGATCGA
GGCCACCTGCAAGCTCAAGCTCAAGCTCGTGAAGCCCGAGACGACCACGGTGGTGTTCGAAAAAGTGAAATGCAAGCTAG
AAAAGGCCGACAAAAACTGCTAG---------------------------------------------------------
--------------------------------------------------------------------------------
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----
>chr2A_1118
--------------------------------------------------------------------------------
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--------------------------------------------------------------------GACCAGGGAGAA
CATCAAGTACGGCTGCATCTGCTTCGGCGTCGTCGCCGTCGTGGTCGTCTTCGCCGTCCTCCTGGCCGCCTACGCCTTCC
TCCGCCACGTCAGCATCATCGTGGAGGACGCCTCGCTGACCAGGTTTGCACTGCTGACGACCCCGGCGACGGCGCTCGCG
TACAACCTCTCGCTGTCTCTCAACGTCCGCAACCCGAACTGGGCGATGAGCATCAAGAACACGGAGCCGTTCGAGGCCGC
CTACAAGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCTCTGACAAGGGCGACAAGCATCCCCCCAGGAAGACCATGG
TTTACCGCCTTGACTCGGGATCAGACGGCGCCCTCGTGTCGCTGGGTAACGCCGGCGTGGTGGAGTACAAGAAGGAGAAC
GAGACAGGTGTGTTCGAGGTGGAGGTGGCGCTGACCCGCAAAGTGAGCTACACAGCGCGCTACACCAAGTGCAAGATCGA
GGCCACCTGCAAGCTCAAGCTCAAGCTCGTGAAGCCGGAGACGACCACGGTGGTGTTCGAAAAAGTGAAATGCAAGCTAG
AAAAGGCCGAGAAAAACTGCTAG---------------------------------------------------------
--------------------------------------------------------------------------------
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----
>chr1D_2255
GTTTATT-------------------------------------------------------------------------
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-----------------------------------------------------------TTTTTTCGGAAAGGAGGATGA
CCCCCGGCCTCTGCATCTGGAAGATGCATGCGGCCATTTTATTAATTATTCTTGAGGACCTTACAAAGAATAAAAACAAT
ATGCCTGAATCCGCCATCTTGGCAACATCTGCCGTTACTCCTATCCAAATGATGAAGGGGTGCAAGCTGGGCCACATACC
CAGACCTCTCACCTAAGCCTAACATCTAAAGCCGGAGGCCCCGACCAAGCCATCTACCAGGTTCGGGGCTCAAACCGGTC
CGACGCACTTACATGTGCCGTCGCCGCCGTCTTTCACTGGTCCATCTTCAGAGCAGATTGAGGTGACAACCTTGGCAGGT
CCTCCGCCATCGACGCCACCATGACGCCAAACGACGACCTCCACCTACGCAAGCCTTGGCAGGTCCTCCGTCATTGACAC
CACCACGACGCCAGCCGACGACCTCCACCTACGCGAGTCCATCTCCAAGCAACGGACGTAAATCCATGCTAGGATAGGGC
CGCACCACCGCCATCGCCCACCACCCACAAGCGCCACCCAACCCCAAGGTTCCCAAAGCGG--CCTTCAAGAAGGGAACG
ACGCCGTGAGCGCCGCCGCCGCCCAACACAAAGTTAGGGCTTTCGCCCGGGAGACCTAGGGGAAGGTG-AAGTGAGGAGA
TCAGTCCATACCGACGCCTCCAAGGAGGGGAACGGCGCCCTCAAGCGTCGCCGTCGGCGCGGCCGGTC------------
----
>chr2D_2256
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-------------------------------------------------------TTTTGTTTTTGGAAAAGGAGGATGA
CCCCCGGCCTCTGCATCTGGGAGATGCATGCGGCCATTTTATTGATTATTCTCGAGGACCTTACAAAGTAGAACAACAAT
ATGCCTGAAACCGCCATCTTGGCAATATCTGCCGCTACTCCTATCCAAATGATGAAGGGGTGCAAGTTGGGCCACATACC
CAGACCTCTCACCTAAGCCTAACATCTAAAGCCGGAGGCCCCGACCAAGCCATCTGCCGGGTCCGGGGCTCAAACCGGTC
TGACGCACTCACATGTGTCGTCGCCGCCACCTTCCACTGGTCCATCTTCAGAGCAGATTGAGGTGACAACCTTGGCAGGT
CCTCTGCCATCGATACCACCACGACGCCAAACGACGACCTCCACCTACGCTGGCCTTGGCAGGTCCTCTGCCATTGACGC
CACCACGACGTCAGCCGACGACCTTCACCTACGCGAGTCCATCTCCAAACATCGGACGTAAATCCATGCTAGGATAGGGC
CGCACCACCGCCGTCGCCCACCACCCACAAGCGCCACCCAACCCCAAGGTTCCCAAAGCGGCGCCTTCAAAAAGGGAACG
GCGCCGTGAGCGCCGCCGCCGCCCA--ACAAAGTTAGGGCTTTCGCCCGGGAGACCTAGGGGAAGGTG-AAGTGAGGAGA
TCAGTCCATACCGACACCTCCAAGGAGGGGAACGGCGCCCTCAGGCATCGCTGTCGGCGCGGCCGGTC------------
----
>chr2D_2257
--------------------------------------------------------------------------------
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--------------------------------------------------------TTTTTTTTTGGAAAAGGAGGATGA
CCCCTGGCCTCTGCATCTGGAAGATACATGCGGCCATTTTATTGATTATTCTCGAGGACCTTACAAAGTAGAACAACAAT
ATGCCTGAA-CCGCCATCTTGGCAACATCTGCCGCTACTCCTATCCAAATGATGAAGGGGTGCAAGCTGGGCCACATACC
CAGACCTCTCACCTAAGCCTAACATCTAAAGCCGGAGGCCCCGACCAAGCCATCTGCCGGGTCCAGGGCTCAAACCGGTC
CGACGCACTCACATGTGTCGTCGCCGCCATCTTCCACTGGTCCATCTTCAGAGCAGATTGAGGTGACAACCTTGGCAGGT
CCTTCGCCATCGACGCCACCACGACGCCAAACGACGACCTCCACCTACGCGAGCCTTGGCAGGTCCTCCGCCATTGACGC
CACCACGACGCCAGCCGACGACCTCCACCTATGCGAGTCCATCTCCAAGCAACAGACGTAAATCCATGCTAGGATAGGGC
CGCACCACCGCCGTCGCCCACCACCCACAAGCGCCACACAACCCCAAGGTTCCCAAAGCGGCGCCTTCAAGAAGGGAACG
GCGCCGTGAGCGCCGCCGCCGCCCA--ACAAAGTTAGGGCTTTCGCCCAGGAGACCTAGGAAAAGGTG-AAGTGAGAAGA
TCAGTCCATACCGACGCCTCCAAGGAGGGGAACGGCGCCCTCAGGCGTCGCCGTCGGCGCGGCCGGTC------------
----
>chr7D_2257
--------------------------------------------------------------------------------
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--------------------------------------------------------TTTTTTTTTGGAAAAGGAGGATGA
CCCCCGGCCTCTACATCTGGGAGATGCATGCGGTCATTTTATTAATTATTCTCGAGGACCTTACAAAGTAGAACAATAAT
ATGCCTGAATCCGCCATCTCGCCAACATCTGCCGCTATTCCTATCCGAATGATGAAGGGGTGCAAGATGGGCCACATACC
CAGACCTCTCACCTAAGCCTAACATCTAAAGCCGGAGGCCCTGACCGAGCCATCTGCCAGGTCCGGGGCTCAAACCGGTC
CGACGCACTCACATGTGTCGTCGCCGCCGTCTTCCGCTGGCCCATCTTCAGATAAGATTGAGGTGACAACCTTGGTAGGT
CCTCCGCCATCGACGCCACCACGACGCCAAACGACGGCCTCCACCTACGCGAGCCTTCGCAGGTCCCCCGCCATTGACGC
CACCACGACGCCAGCCGACTCCCTCCACCTACGCGAGTCCATCTCCAAGCAACGGATGTAAATCCATGCTAGGATAGGGC
CGCACCACCGCCGTCACCCACCACCCACAAGCGCCACCCAACCCCAAGGTTCCCAAAGCGGCACCTTCAAGAAGGGAGCG
CCGCCGTTAGCGCCGCCGCCGCCAA--ACAAAGTTAGGGCTTTCGCCCGGGAGACCTAGGGGAAGGTG-AAGTGAGGAGA
TCAGTCCATACCGACGCCTCCAAGGAGGGGAACGACGCCCTCAGGCGTCGCCGACGGCGCGCCCGGTC------------
----
>chr7D_2257
--------------------------------------------------------------------------------
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--------------------------------------------------------TTTTTTTTTGGAAAAGGAGGATGA
CCCCCGGCCTCTACATCTGGGAGATGCATGTGGTCATTTTATTAATTATTCTCGAGGACCTTACAAAATAGAACAATAAT
ATGCCTGAATCCGCCATCTTGCCAACATCTGCCGCTATTCCTATCCGAATGATGAAGGAGTGCAAGCTGGGCCACATACC
CAGACCTCTCACCTAAGCCTAACATCTAAAGCCGGAGGCCCTGACCGAGCCATCTGCCAGGTCCGGGGCTCAAACCGGTC
CGACGCACTCACATGTGTCGTCGCCGCCGTCTTCCGCTGGCCCATCTTCAGATAAGATTGAGGTGACAACCTTGGTAGGT
CCTCCGCCATCGACGCCACCACGACGCCAAACGACGGCCTCCACCTACGCGAGCCTTGGCGGGTCCCCCGCCATTGACGC
CACCACGACGCCAGCCGACTCCCTCCACCTACGCGAGTCCATCTCCAAGCAACGGATGTAAATCCATGCTAGGATAGGGC
CGCACCACCACCGTCACCCACCACCCACAAGCGCCACCCAACCCCAAGGTTCCCAAAGCGGCACCTTCAAGAAGGGAGCG
GCGCCGTTAGCGCCGCCGCCGCCAA--ACAAAGTTAGGGCTTTCGCCCGGGAGACCTAGGGGAAGGTG-AAGTGAGGAGA
TCAGTCCATACCGACGCCTCCAAGGAGGGGAACGACGCCCTCAGGCGTCGCCGACGGCGCGCCCGGTC------------
----
>chr3A_2258
TTTTTT--------------------------------------------------------------------------
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--------------------------------------------------------------TTTGAAAAAGGAGGATGA
CC-CCGGCCTCTGCGTCTGGGAGATGCATGCGGCCATTTTATTAATTATTCTCGAGGACCTTACAAAGTAGAACAACAAT
ATACCTGAATCCGCCATCTTGGCAACATCTGCCGCTACTCCTATCCAAATGATGAAGGGGTGCAAGCTGGGCCACATACC
CAGACCTCTCACCTAAACCTAACATCTAAAGCCGGAGGCCCCGACCGAGCCATTTGCGAGGTCCGGGGCTCAAACTGGTC
CGACCCACTCACATGTGTCGTTGTGGCCGTCTTCCACTGGTCCATCTTCAGAGCAGATTGAGGTGACAACCTTGGCAGGT
CCTCCGCCATCGACGCCACCACGACGCCAAACGACGACCTCCACCTACGCGAGCCTTGGCAGGTCCTCCGCCAATGACGC
CACCACGACGCCAGCCGACGACCTCCACCTACGCGAGTCCATCTCCAAGCAACGGACGTAAATCCATGCTAGGATAGGGC
CGCACCATCGCCGTCGCCCACCACCCACAAGCGTCACCCAACCCCAAGGTTCCCAAAGCGGCGCCTTCAAGAAGGGAACG
GCGCCGTGAGCGCCGCCGCCGCCCA--AAAAAGTTAGGGCTTTCGCCCGGGAGACCTAGGGGAAGGTG-AAGTGAGGAGA
TCAGTCCATACCGACGCCTCCAAGGAGGGGAACGGCGCCCTCAGGCGTTGCCGTCGGCGCGGCCGGTC------------
----
>chr3D_2258
--------------------------------------------------------------------------------
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---------------------------------------------------------TTTTTTTTAGAAAAGGAGGATGA
CCCCCGGCCTTTACATCTGGAAGATGCATGCGGCCATTTTATTAATTATTCTCGAGGACCTTACAAAGTAAAACAACAGT
ATGTCCGAATCCGTCATCTTGGCAACATCTGCCGCTACTCCTATCCAAATGATGAAGGGGTGCAAGCTGGGCCACATATC
CAGACCTCTCACCTAAGCCTAACATCTAAATCCGGAGGCCCCGACCGAGCCATCTGCTAGGTCCGGGGCTCAAACCGGTC
CGACGCACTCACATGTGTCGTCGCCGCCGTCTTCCACTGGTCCATCTTCAAAACAGATTGAGGTGACAACCTTGGCAGGT
CCTCCGCCATCGACGCCACCATGACGCCAAACGAAGACCTCCACCTACGCGAGCCTTGGCGGGTCCTCCGCCATTGACGC
CACCACGACGCCTGCCGACGACCTCCACCTACGTGAGTCCATCTCCAAGTAACGGACGTAAATCCATGCTAGGATAGGGC
CGCACCACCGCCGTCGCCCACCACCCACAAGCGCCACCCAACCCCAAGGTTCCCAAAGTGGCGCCTTCAAGAAGGGAATG
GCGCCGTGAGCGCCGCCGCCGCCCA--ACAAAGTTAGGGCTTTCGCCTGGGAGACCTAGGGGAAGGTG-AAGTGAGGAGA
TCAGTCCATACCGACGCCTTCAAGGAGGGGAACGGCGCCCTCAGGCGTCGTCGTCGGCGCGGCCGGTC------------
----
>chr1D_2259
--------------------------------------------------------------------------------
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----------------------------------------------------------TTTTTTTAGAAAAGGAGGATGA
CCCCCGGCCTCTGCATCTGGGAGATGCATGCGGCCATTTTATTGATTATTCTCGAGGACCTTACAAAGTAGAACAACAAT
ATGCCTGAATCCGTCATCTTAGCAACATCTGCCGCTACTCCTATCCAAATGATGAAGGGGTGCAAGCCGGGCCACATACC
CAGACCTCTCACCTAAGCCTAACATCTGAAGCCGGAGGGCCTGACCAAGCCATCTGCTCGGTCCGGGGCTCAAACCGGTC
CGACGCACTCACATGTGTCGTCGCCGCCATCTTCCACTGGTCCATCTTCAGAGCAGATTGAGGTGGCCACCTTGGCAGGT
CCTCCGCCATCGACGCCACCACGACGCCAAACGACGACCTCCACCTACGCGAGCCTTGGCAGGTCCTCCGCCATTGACGC
CACCACGACGCCAGACGACGACCTCCACCTACACGAGTCCATCTCCAAGCAACGGATGTAAATCCATGCTAGGATAGGGC
CGCACCACCACCGTCGCCCACCACCCACAAGCGCCACCCAACTCCAAGGTTCCCAAAGCGGCGCCTTCAAGAAGGGAACG
GTGCCGTGAGCGCCACCGCCGCCCA--ACAAAGTTAGGGCTTTCGCCCGGGAGAC-TAGGGGAAGGGGAA-GTGAGGAGA
TCAGTCCATACCAACGCCTCCAAGGAGGGGAACGGCGCCCTCAGGCGTCGCCGTCGGCACGGCCGGTC------------
----
>chr1D_2260
--------------------------------------------------------------------------------
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-----------------------------------------------------------TTTTTTGGAAAAGGAGGATAA
CCCCCGGCCTCTGCATCTGGGAGATGCATGCGGCCATTTTATTGATTATTCTCAAGGACCTTACAAAGTAGAACAACAAT
ATGCCTGAATCCGTCATCTTGGCAACATCTTCCGCTACTCCTATCC-AATGATGAAGGGGTGCAAGCTGGGCCACATACC
CATACCTTTCACCTAAGCCTAACATCTAAAGCTGGAGGCCCCGACCAAGCCATGTGCCGGGTCCGGGGCTCAAACCGGTC
CGACACACTCACATGTGTCGTCGTCGCCATCTTCCACTGGTCCATCTTCAGAGCAGATTGAGGTGACAACCTTGGCAGGT
CCTCCGCCATCGACGCCACCACGACGCCAAACGATGACCTCCACCTATGCGAGCCTTGGCAGGTCCTCCGCCATTGACGC
CACCACGACGCCAGCCAACGACCTCCACCTACGCGAGTCCGTCTCCAAGGAACAGACGTAAATCCATGCTAGGATAGGGC
CGCACCACCGCCGTCGCCCACCACCCACAAGCGCCACCCAACCCCAAGGTTCCCAAAGCGGCACCTTCAAGAAGGGAACG
ACGTCGTGAGCGCCGCCGCCGCCCA--ACAAAGTTAGGGCTTTCGCCCGGGAGACCTAGGGGAAGGTG-A-GTGAGGAGA
TCAGTCCATACCGACGCCTCCAAGGATGGGAATGGCGCCCTCAGGCATCGCCGTCGGCGCGGCCGGTC------------
----
>SNPs
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
--------------S---------------------S-------------------------------------------
--SS---------------------S----S-------------SS----------------------------S-----
------------SSSSSSSSSSSSSS-----S---S-----S-SS-----------S---------------S-------
--SSSS--------------------------------------------------------------------------
-----S------S------------S--------------------------------------------S---------
------------------------------------SSS-----------------------------------------
------------------------S-----SSSS---------------------------------S------------
-------------------------------------------------S-S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------S----------------------------------------------
----------------------------------------S---------------------------------------
-S------------------------S----------S-S----S---------SS------------------------
-------------------------------------------------S------------S--------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------S------------------S----S----------------------S-------S------------------
--------------S---------------------------S--------------------------------S-SS-
---SS-----------------------S-----S-----------S-----------------S---------------
---------------------S--------------SS-------------------------------S----------
-----S-------------------------------------SSSSSSSSSSSS----------S--------------
-----S-------S-----S---------------------S---------------------S----------------
---------------------S------------S------------------------------------S--------
--------------------S---S-------------------------------------------------------
------------------------S----------------S--------------------------------S-----
-------------------------------S----------S--S------------S---------------------
------S------------S--------------S----------------------S----------------------
-S--------S----------------------------------------------S----------------------
-------------------S------------------------------S-----------S----S------------
---------------------------------S-------------------------S--------SSSSSSSSSSSS
SSSS
>forward_436
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GCGCCACTGCTATTTTCCTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_1941
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------GTGTGTGTGTGTGTGTGTGG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_635
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGCCCACCATAGAGATCCGA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_1942
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGTGTGTGTGTGTGTGTGGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_665
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GCGCAGTTGAGGCTAGTGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_1944
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TGTGTGTGTGTGTGTGGTGT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1540
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TGTACCACCTCACCTCCTCC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_2821
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GACACCTAAAGCTGGAGGCC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
