Multiple sequence alignment - TraesCS1A01G368700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G368700 chr1A 100.000 3335 0 0 1 3335 546511097 546514431 0.000000e+00 6159.0
1 TraesCS1A01G368700 chr1A 93.506 77 4 1 2677 2753 554989576 554989651 2.720000e-21 113.0
2 TraesCS1A01G368700 chr1D 94.544 2346 70 12 1021 3335 451952947 451955265 0.000000e+00 3570.0
3 TraesCS1A01G368700 chr1D 86.735 294 29 2 1 294 451950728 451951011 5.370000e-83 318.0
4 TraesCS1A01G368700 chr1D 89.300 243 26 0 305 547 371257268 371257026 4.180000e-79 305.0
5 TraesCS1A01G368700 chr1B 93.150 1708 65 18 1021 2676 621952257 621953964 0.000000e+00 2459.0
6 TraesCS1A01G368700 chr1B 96.073 331 12 1 2747 3077 621953953 621954282 3.790000e-149 538.0
7 TraesCS1A01G368700 chr1B 94.977 219 11 0 3112 3330 621954284 621954502 8.860000e-91 344.0
8 TraesCS1A01G368700 chr1B 88.519 270 30 1 1 269 621951566 621951835 3.210000e-85 326.0
9 TraesCS1A01G368700 chr1B 87.437 199 24 1 633 831 621951832 621952029 9.310000e-56 228.0
10 TraesCS1A01G368700 chr1B 92.683 41 1 1 595 635 266953520 266953482 1.290000e-04 58.4
11 TraesCS1A01G368700 chr6A 87.316 339 34 5 305 635 49761140 49761477 2.430000e-101 379.0
12 TraesCS1A01G368700 chr7B 87.374 198 25 0 302 499 468848316 468848513 9.310000e-56 228.0
13 TraesCS1A01G368700 chr7B 100.000 30 0 0 606 635 667418929 667418900 4.650000e-04 56.5
14 TraesCS1A01G368700 chr4A 78.363 342 57 17 302 633 579840600 579840934 4.360000e-49 206.0
15 TraesCS1A01G368700 chr4A 92.754 69 3 2 2677 2743 565325572 565325640 7.610000e-17 99.0
16 TraesCS1A01G368700 chr5B 91.139 79 6 1 2677 2754 711256573 711256495 4.550000e-19 106.0
17 TraesCS1A01G368700 chr5B 95.455 66 2 1 2679 2743 38027244 38027309 1.640000e-18 104.0
18 TraesCS1A01G368700 chr3D 97.436 39 1 0 597 635 578615235 578615197 2.150000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G368700 chr1A 546511097 546514431 3334 False 6159 6159 100.0000 1 3335 1 chr1A.!!$F1 3334
1 TraesCS1A01G368700 chr1D 451950728 451955265 4537 False 1944 3570 90.6395 1 3335 2 chr1D.!!$F1 3334
2 TraesCS1A01G368700 chr1B 621951566 621954502 2936 False 779 2459 92.0312 1 3330 5 chr1B.!!$F1 3329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 520 0.031994 CTGGGGCGTTTCTGTTTTGG 59.968 55.0 0.0 0.0 0.0 3.28 F
845 858 0.104671 GATGAGGTGGAGAGCAGAGC 59.895 60.0 0.0 0.0 0.0 4.09 F
848 861 0.108233 GAGGTGGAGAGCAGAGCAAG 60.108 60.0 0.0 0.0 0.0 4.01 F
1635 3229 0.472471 TCACCTTCAACACCCTGGTC 59.528 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 3360 0.878523 CAGTTTCTTGGCGTCGTCCA 60.879 55.000 4.55 4.55 0.0 4.02 R
2235 3829 1.002069 ACCCTTCTGCATCCATCCAA 58.998 50.000 0.00 0.00 0.0 3.53 R
2287 3881 1.968540 GCTTCACCTCACCTGCACC 60.969 63.158 0.00 0.00 0.0 5.01 R
3168 4820 0.034756 TTACGACACCATGCAGCTGT 59.965 50.000 16.64 0.00 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.699955 TTGTCGCGAGATGCCGGAG 62.700 63.158 10.24 0.00 45.19 4.63
38 39 4.933064 CGAGATGCCGGAGCCGAC 62.933 72.222 5.05 0.00 42.83 4.79
64 65 1.220749 GGAGCTGTAATCGGCCACA 59.779 57.895 2.24 0.00 46.23 4.17
87 88 0.819259 GGAGACTGCAACCAACAGCA 60.819 55.000 0.00 0.00 38.79 4.41
114 115 3.312421 TGCTATGGCATCTTTTTCGTAGC 59.688 43.478 1.65 4.58 44.28 3.58
115 116 3.312421 GCTATGGCATCTTTTTCGTAGCA 59.688 43.478 1.65 0.00 41.65 3.49
116 117 4.201910 GCTATGGCATCTTTTTCGTAGCAA 60.202 41.667 1.65 0.00 41.65 3.91
118 119 3.407698 TGGCATCTTTTTCGTAGCAAGA 58.592 40.909 0.00 0.00 0.00 3.02
119 120 3.436704 TGGCATCTTTTTCGTAGCAAGAG 59.563 43.478 0.00 0.00 30.15 2.85
120 121 3.420828 GCATCTTTTTCGTAGCAAGAGC 58.579 45.455 0.00 0.00 42.56 4.09
126 128 0.391130 TTCGTAGCAAGAGCCGCAAT 60.391 50.000 0.00 0.00 43.56 3.56
165 167 2.420058 ACCGATGAATTGGGGAAGAC 57.580 50.000 1.63 0.00 35.53 3.01
167 169 2.292267 CCGATGAATTGGGGAAGACAG 58.708 52.381 0.00 0.00 0.00 3.51
168 170 2.356125 CCGATGAATTGGGGAAGACAGT 60.356 50.000 0.00 0.00 0.00 3.55
175 177 0.836400 TGGGGAAGACAGTGAGGGAC 60.836 60.000 0.00 0.00 0.00 4.46
181 183 0.322636 AGACAGTGAGGGACGATCGT 60.323 55.000 22.97 22.97 0.00 3.73
285 287 2.866156 ACGATTGATGTGATGTAAGCGG 59.134 45.455 0.00 0.00 36.39 5.52
286 288 2.866156 CGATTGATGTGATGTAAGCGGT 59.134 45.455 0.00 0.00 0.00 5.68
287 289 3.302675 CGATTGATGTGATGTAAGCGGTG 60.303 47.826 0.00 0.00 0.00 4.94
288 290 2.022764 TGATGTGATGTAAGCGGTGG 57.977 50.000 0.00 0.00 0.00 4.61
289 291 1.277842 TGATGTGATGTAAGCGGTGGT 59.722 47.619 0.00 0.00 0.00 4.16
290 292 1.665679 GATGTGATGTAAGCGGTGGTG 59.334 52.381 0.00 0.00 0.00 4.17
291 293 0.321210 TGTGATGTAAGCGGTGGTGG 60.321 55.000 0.00 0.00 0.00 4.61
292 294 1.024579 GTGATGTAAGCGGTGGTGGG 61.025 60.000 0.00 0.00 0.00 4.61
293 295 1.195442 TGATGTAAGCGGTGGTGGGA 61.195 55.000 0.00 0.00 0.00 4.37
294 296 0.743345 GATGTAAGCGGTGGTGGGAC 60.743 60.000 0.00 0.00 0.00 4.46
295 297 1.485294 ATGTAAGCGGTGGTGGGACA 61.485 55.000 0.00 0.00 0.00 4.02
296 298 1.375523 GTAAGCGGTGGTGGGACAG 60.376 63.158 0.00 0.00 41.80 3.51
297 299 1.839747 TAAGCGGTGGTGGGACAGT 60.840 57.895 0.00 0.00 41.80 3.55
298 300 2.107041 TAAGCGGTGGTGGGACAGTG 62.107 60.000 0.00 0.00 41.80 3.66
299 301 4.250305 GCGGTGGTGGGACAGTGT 62.250 66.667 0.00 0.00 41.80 3.55
300 302 2.508928 CGGTGGTGGGACAGTGTT 59.491 61.111 0.00 0.00 41.80 3.32
301 303 1.891919 CGGTGGTGGGACAGTGTTG 60.892 63.158 0.00 0.00 41.80 3.33
302 304 2.193536 GGTGGTGGGACAGTGTTGC 61.194 63.158 0.00 0.00 41.80 4.17
303 305 2.193536 GTGGTGGGACAGTGTTGCC 61.194 63.158 0.00 0.00 41.80 4.52
304 306 2.978010 GGTGGGACAGTGTTGCCG 60.978 66.667 0.00 0.00 41.80 5.69
305 307 3.660111 GTGGGACAGTGTTGCCGC 61.660 66.667 0.00 0.00 41.80 6.53
306 308 3.872603 TGGGACAGTGTTGCCGCT 61.873 61.111 0.00 0.00 0.00 5.52
307 309 2.345991 GGGACAGTGTTGCCGCTA 59.654 61.111 0.00 0.00 0.00 4.26
308 310 1.078426 GGGACAGTGTTGCCGCTAT 60.078 57.895 0.00 0.00 0.00 2.97
309 311 0.177141 GGGACAGTGTTGCCGCTATA 59.823 55.000 0.00 0.00 0.00 1.31
310 312 1.287425 GGACAGTGTTGCCGCTATAC 58.713 55.000 0.00 0.00 0.00 1.47
311 313 1.287425 GACAGTGTTGCCGCTATACC 58.713 55.000 0.00 0.00 0.00 2.73
312 314 0.107848 ACAGTGTTGCCGCTATACCC 60.108 55.000 0.00 0.00 0.00 3.69
313 315 0.107897 CAGTGTTGCCGCTATACCCA 60.108 55.000 0.00 0.00 0.00 4.51
314 316 0.616371 AGTGTTGCCGCTATACCCAA 59.384 50.000 0.00 0.00 0.00 4.12
315 317 1.014352 GTGTTGCCGCTATACCCAAG 58.986 55.000 0.00 0.00 0.00 3.61
316 318 0.746563 TGTTGCCGCTATACCCAAGC 60.747 55.000 0.00 0.00 36.60 4.01
317 319 0.746563 GTTGCCGCTATACCCAAGCA 60.747 55.000 0.00 0.00 40.08 3.91
318 320 0.746563 TTGCCGCTATACCCAAGCAC 60.747 55.000 0.00 0.00 40.08 4.40
319 321 1.153249 GCCGCTATACCCAAGCACA 60.153 57.895 0.00 0.00 40.08 4.57
320 322 0.535102 GCCGCTATACCCAAGCACAT 60.535 55.000 0.00 0.00 40.08 3.21
321 323 1.270625 GCCGCTATACCCAAGCACATA 60.271 52.381 0.00 0.00 40.08 2.29
322 324 2.413837 CCGCTATACCCAAGCACATAC 58.586 52.381 0.00 0.00 40.08 2.39
323 325 2.058798 CGCTATACCCAAGCACATACG 58.941 52.381 0.00 0.00 40.08 3.06
324 326 2.545113 CGCTATACCCAAGCACATACGT 60.545 50.000 0.00 0.00 40.08 3.57
325 327 3.304861 CGCTATACCCAAGCACATACGTA 60.305 47.826 0.00 0.00 40.08 3.57
326 328 4.235360 GCTATACCCAAGCACATACGTAG 58.765 47.826 0.08 0.00 39.83 3.51
327 329 3.746045 ATACCCAAGCACATACGTAGG 57.254 47.619 5.55 5.55 0.00 3.18
328 330 1.563924 ACCCAAGCACATACGTAGGA 58.436 50.000 15.09 0.00 0.00 2.94
329 331 1.903860 ACCCAAGCACATACGTAGGAA 59.096 47.619 15.09 0.00 0.00 3.36
330 332 2.277084 CCCAAGCACATACGTAGGAAC 58.723 52.381 15.09 5.24 0.00 3.62
331 333 2.093658 CCCAAGCACATACGTAGGAACT 60.094 50.000 15.09 7.55 46.37 3.01
332 334 3.596214 CCAAGCACATACGTAGGAACTT 58.404 45.455 15.09 13.02 41.75 2.66
333 335 4.000988 CCAAGCACATACGTAGGAACTTT 58.999 43.478 15.09 0.24 41.75 2.66
334 336 4.142902 CCAAGCACATACGTAGGAACTTTG 60.143 45.833 15.09 11.59 41.75 2.77
335 337 4.530710 AGCACATACGTAGGAACTTTGA 57.469 40.909 15.09 0.00 41.75 2.69
336 338 4.243270 AGCACATACGTAGGAACTTTGAC 58.757 43.478 15.09 0.00 41.75 3.18
337 339 3.991773 GCACATACGTAGGAACTTTGACA 59.008 43.478 15.09 0.00 41.75 3.58
338 340 4.143179 GCACATACGTAGGAACTTTGACAC 60.143 45.833 15.09 0.00 41.75 3.67
339 341 4.089493 CACATACGTAGGAACTTTGACACG 59.911 45.833 15.09 0.00 41.75 4.49
340 342 2.144482 ACGTAGGAACTTTGACACGG 57.856 50.000 0.00 0.00 41.75 4.94
341 343 1.410153 ACGTAGGAACTTTGACACGGT 59.590 47.619 0.00 0.00 41.75 4.83
342 344 1.790623 CGTAGGAACTTTGACACGGTG 59.209 52.381 6.58 6.58 41.75 4.94
343 345 2.140717 GTAGGAACTTTGACACGGTGG 58.859 52.381 13.48 0.00 41.75 4.61
344 346 0.544697 AGGAACTTTGACACGGTGGT 59.455 50.000 13.48 0.00 27.25 4.16
345 347 1.064979 AGGAACTTTGACACGGTGGTT 60.065 47.619 13.48 6.27 27.25 3.67
346 348 2.171027 AGGAACTTTGACACGGTGGTTA 59.829 45.455 13.48 0.00 27.25 2.85
347 349 3.143728 GGAACTTTGACACGGTGGTTAT 58.856 45.455 13.48 0.00 0.00 1.89
348 350 3.187842 GGAACTTTGACACGGTGGTTATC 59.812 47.826 13.48 1.28 0.00 1.75
349 351 3.764237 ACTTTGACACGGTGGTTATCT 57.236 42.857 13.48 0.00 0.00 1.98
350 352 4.081322 ACTTTGACACGGTGGTTATCTT 57.919 40.909 13.48 0.00 0.00 2.40
351 353 3.813166 ACTTTGACACGGTGGTTATCTTG 59.187 43.478 13.48 0.00 0.00 3.02
352 354 1.803334 TGACACGGTGGTTATCTTGC 58.197 50.000 13.48 0.00 0.00 4.01
353 355 1.346395 TGACACGGTGGTTATCTTGCT 59.654 47.619 13.48 0.00 0.00 3.91
354 356 1.732259 GACACGGTGGTTATCTTGCTG 59.268 52.381 13.48 0.00 0.00 4.41
355 357 0.447801 CACGGTGGTTATCTTGCTGC 59.552 55.000 0.00 0.00 0.00 5.25
356 358 0.036164 ACGGTGGTTATCTTGCTGCA 59.964 50.000 0.00 0.00 0.00 4.41
357 359 0.447801 CGGTGGTTATCTTGCTGCAC 59.552 55.000 0.00 0.00 0.00 4.57
358 360 1.826385 GGTGGTTATCTTGCTGCACT 58.174 50.000 0.00 0.00 0.00 4.40
359 361 1.470098 GGTGGTTATCTTGCTGCACTG 59.530 52.381 0.00 0.00 0.00 3.66
360 362 1.470098 GTGGTTATCTTGCTGCACTGG 59.530 52.381 0.00 0.00 0.00 4.00
361 363 1.350684 TGGTTATCTTGCTGCACTGGA 59.649 47.619 0.00 1.46 0.00 3.86
362 364 2.012673 GGTTATCTTGCTGCACTGGAG 58.987 52.381 0.00 0.00 0.00 3.86
363 365 2.012673 GTTATCTTGCTGCACTGGAGG 58.987 52.381 0.00 0.00 0.00 4.30
364 366 1.571955 TATCTTGCTGCACTGGAGGA 58.428 50.000 0.00 0.00 0.00 3.71
365 367 0.917533 ATCTTGCTGCACTGGAGGAT 59.082 50.000 0.00 0.00 0.00 3.24
366 368 1.571955 TCTTGCTGCACTGGAGGATA 58.428 50.000 0.00 0.00 0.00 2.59
367 369 2.121948 TCTTGCTGCACTGGAGGATAT 58.878 47.619 0.00 0.00 0.00 1.63
368 370 2.158856 TCTTGCTGCACTGGAGGATATG 60.159 50.000 0.00 0.00 0.00 1.78
369 371 0.471191 TGCTGCACTGGAGGATATGG 59.529 55.000 0.00 0.00 0.00 2.74
370 372 0.761187 GCTGCACTGGAGGATATGGA 59.239 55.000 0.00 0.00 0.00 3.41
371 373 1.141657 GCTGCACTGGAGGATATGGAA 59.858 52.381 0.00 0.00 0.00 3.53
372 374 2.421952 GCTGCACTGGAGGATATGGAAA 60.422 50.000 0.00 0.00 0.00 3.13
373 375 3.474600 CTGCACTGGAGGATATGGAAAG 58.525 50.000 0.00 0.00 0.00 2.62
374 376 3.114606 TGCACTGGAGGATATGGAAAGA 58.885 45.455 0.00 0.00 0.00 2.52
375 377 3.523157 TGCACTGGAGGATATGGAAAGAA 59.477 43.478 0.00 0.00 0.00 2.52
376 378 4.018506 TGCACTGGAGGATATGGAAAGAAA 60.019 41.667 0.00 0.00 0.00 2.52
377 379 4.578105 GCACTGGAGGATATGGAAAGAAAG 59.422 45.833 0.00 0.00 0.00 2.62
378 380 5.630069 GCACTGGAGGATATGGAAAGAAAGA 60.630 44.000 0.00 0.00 0.00 2.52
379 381 6.418101 CACTGGAGGATATGGAAAGAAAGAA 58.582 40.000 0.00 0.00 0.00 2.52
380 382 6.886459 CACTGGAGGATATGGAAAGAAAGAAA 59.114 38.462 0.00 0.00 0.00 2.52
381 383 7.559170 CACTGGAGGATATGGAAAGAAAGAAAT 59.441 37.037 0.00 0.00 0.00 2.17
382 384 8.118600 ACTGGAGGATATGGAAAGAAAGAAATT 58.881 33.333 0.00 0.00 0.00 1.82
383 385 8.525290 TGGAGGATATGGAAAGAAAGAAATTC 57.475 34.615 0.00 0.00 38.39 2.17
384 386 7.561356 TGGAGGATATGGAAAGAAAGAAATTCC 59.439 37.037 0.00 0.00 42.39 3.01
403 405 8.556213 AAATTCCAGAATTTTTGATCATGTGG 57.444 30.769 11.65 0.00 45.67 4.17
404 406 5.075858 TCCAGAATTTTTGATCATGTGGC 57.924 39.130 0.00 0.00 0.00 5.01
405 407 4.527427 TCCAGAATTTTTGATCATGTGGCA 59.473 37.500 0.00 0.00 0.00 4.92
406 408 5.188163 TCCAGAATTTTTGATCATGTGGCAT 59.812 36.000 0.00 0.00 0.00 4.40
407 409 6.380560 TCCAGAATTTTTGATCATGTGGCATA 59.619 34.615 0.00 0.00 0.00 3.14
408 410 6.477688 CCAGAATTTTTGATCATGTGGCATAC 59.522 38.462 0.00 0.00 0.00 2.39
409 411 7.262772 CAGAATTTTTGATCATGTGGCATACT 58.737 34.615 0.00 0.00 0.00 2.12
410 412 7.434307 CAGAATTTTTGATCATGTGGCATACTC 59.566 37.037 0.00 0.00 0.00 2.59
411 413 4.880886 TTTTGATCATGTGGCATACTCG 57.119 40.909 0.00 0.00 0.00 4.18
412 414 1.869774 TGATCATGTGGCATACTCGC 58.130 50.000 0.00 0.00 0.00 5.03
419 421 2.430921 GGCATACTCGCCGATCGG 60.431 66.667 30.03 30.03 43.52 4.18
429 431 2.278857 CCGATCGGCGTCTTGGAG 60.279 66.667 23.37 0.00 38.67 3.86
430 432 2.956964 CGATCGGCGTCTTGGAGC 60.957 66.667 7.38 0.00 34.64 4.70
431 433 2.956964 GATCGGCGTCTTGGAGCG 60.957 66.667 6.85 0.00 0.00 5.03
432 434 4.514577 ATCGGCGTCTTGGAGCGG 62.515 66.667 6.85 0.00 35.42 5.52
434 436 4.514577 CGGCGTCTTGGAGCGGAT 62.515 66.667 0.00 0.00 36.03 4.18
435 437 2.812499 GGCGTCTTGGAGCGGATA 59.188 61.111 0.00 0.00 0.00 2.59
436 438 1.591863 GGCGTCTTGGAGCGGATAC 60.592 63.158 0.00 0.00 0.00 2.24
437 439 1.141019 GCGTCTTGGAGCGGATACA 59.859 57.895 0.00 0.00 0.00 2.29
438 440 0.459585 GCGTCTTGGAGCGGATACAA 60.460 55.000 0.00 0.00 0.00 2.41
445 447 3.459232 TGGAGCGGATACAAGAAGATG 57.541 47.619 0.00 0.00 0.00 2.90
446 448 2.766263 TGGAGCGGATACAAGAAGATGT 59.234 45.455 0.00 0.00 37.32 3.06
447 449 3.126831 GGAGCGGATACAAGAAGATGTG 58.873 50.000 0.00 0.00 34.75 3.21
448 450 3.126831 GAGCGGATACAAGAAGATGTGG 58.873 50.000 0.00 0.00 34.75 4.17
449 451 1.599542 GCGGATACAAGAAGATGTGGC 59.400 52.381 0.00 0.00 34.75 5.01
450 452 2.213499 CGGATACAAGAAGATGTGGCC 58.787 52.381 0.00 0.00 34.75 5.36
451 453 2.419990 CGGATACAAGAAGATGTGGCCA 60.420 50.000 0.00 0.00 34.75 5.36
452 454 3.745480 CGGATACAAGAAGATGTGGCCAT 60.745 47.826 9.72 0.00 34.75 4.40
453 455 3.567164 GGATACAAGAAGATGTGGCCATG 59.433 47.826 9.72 2.22 34.75 3.66
454 456 2.592102 ACAAGAAGATGTGGCCATGT 57.408 45.000 9.72 3.02 30.82 3.21
455 457 2.165167 ACAAGAAGATGTGGCCATGTG 58.835 47.619 9.72 1.00 30.82 3.21
456 458 1.475280 CAAGAAGATGTGGCCATGTGG 59.525 52.381 9.72 0.00 38.53 4.17
457 459 0.700564 AGAAGATGTGGCCATGTGGT 59.299 50.000 9.72 0.00 37.57 4.16
458 460 0.813184 GAAGATGTGGCCATGTGGTG 59.187 55.000 9.72 0.00 37.57 4.17
477 479 4.961511 GCCGCCGGATGCATCGTA 62.962 66.667 20.15 0.00 41.33 3.43
478 480 2.734723 CCGCCGGATGCATCGTAG 60.735 66.667 20.15 13.43 41.33 3.51
479 481 2.335011 CGCCGGATGCATCGTAGA 59.665 61.111 20.15 0.00 45.75 2.59
480 482 1.080501 CGCCGGATGCATCGTAGAT 60.081 57.895 20.15 0.00 45.12 1.98
481 483 1.073216 CGCCGGATGCATCGTAGATC 61.073 60.000 20.15 4.55 45.12 2.75
482 484 0.244994 GCCGGATGCATCGTAGATCT 59.755 55.000 20.15 0.00 45.12 2.75
483 485 1.988063 CCGGATGCATCGTAGATCTG 58.012 55.000 20.15 1.79 45.12 2.90
484 486 1.344458 CGGATGCATCGTAGATCTGC 58.656 55.000 20.15 2.39 45.12 4.26
485 487 1.719600 GGATGCATCGTAGATCTGCC 58.280 55.000 20.15 0.00 41.39 4.85
486 488 1.001293 GGATGCATCGTAGATCTGCCA 59.999 52.381 20.15 0.00 41.39 4.92
487 489 2.548707 GGATGCATCGTAGATCTGCCAA 60.549 50.000 20.15 0.00 41.39 4.52
488 490 1.939974 TGCATCGTAGATCTGCCAAC 58.060 50.000 5.18 0.00 41.39 3.77
489 491 1.482182 TGCATCGTAGATCTGCCAACT 59.518 47.619 5.18 0.00 41.39 3.16
490 492 2.093500 TGCATCGTAGATCTGCCAACTT 60.093 45.455 5.18 0.00 41.39 2.66
491 493 3.132111 TGCATCGTAGATCTGCCAACTTA 59.868 43.478 5.18 0.00 41.39 2.24
492 494 3.738282 GCATCGTAGATCTGCCAACTTAG 59.262 47.826 5.18 0.00 45.12 2.18
493 495 3.438297 TCGTAGATCTGCCAACTTAGC 57.562 47.619 5.18 0.00 0.00 3.09
494 496 3.024547 TCGTAGATCTGCCAACTTAGCT 58.975 45.455 5.18 0.00 0.00 3.32
495 497 3.119291 CGTAGATCTGCCAACTTAGCTG 58.881 50.000 5.18 0.00 0.00 4.24
496 498 3.429547 CGTAGATCTGCCAACTTAGCTGT 60.430 47.826 5.18 0.00 0.00 4.40
497 499 3.710209 AGATCTGCCAACTTAGCTGTT 57.290 42.857 0.00 0.00 0.00 3.16
498 500 3.341823 AGATCTGCCAACTTAGCTGTTG 58.658 45.455 9.42 9.42 44.81 3.33
499 501 1.238439 TCTGCCAACTTAGCTGTTGC 58.762 50.000 10.64 7.57 44.12 4.17
509 511 3.605664 GCTGTTGCTGGGGCGTTT 61.606 61.111 0.00 0.00 42.25 3.60
510 512 2.644992 CTGTTGCTGGGGCGTTTC 59.355 61.111 0.00 0.00 42.25 2.78
511 513 1.898574 CTGTTGCTGGGGCGTTTCT 60.899 57.895 0.00 0.00 42.25 2.52
512 514 2.133742 CTGTTGCTGGGGCGTTTCTG 62.134 60.000 0.00 0.00 42.25 3.02
513 515 2.193536 GTTGCTGGGGCGTTTCTGT 61.194 57.895 0.00 0.00 42.25 3.41
514 516 1.454847 TTGCTGGGGCGTTTCTGTT 60.455 52.632 0.00 0.00 42.25 3.16
515 517 1.040339 TTGCTGGGGCGTTTCTGTTT 61.040 50.000 0.00 0.00 42.25 2.83
516 518 1.040339 TGCTGGGGCGTTTCTGTTTT 61.040 50.000 0.00 0.00 42.25 2.43
517 519 0.597377 GCTGGGGCGTTTCTGTTTTG 60.597 55.000 0.00 0.00 0.00 2.44
518 520 0.031994 CTGGGGCGTTTCTGTTTTGG 59.968 55.000 0.00 0.00 0.00 3.28
519 521 0.395862 TGGGGCGTTTCTGTTTTGGA 60.396 50.000 0.00 0.00 0.00 3.53
520 522 0.747852 GGGGCGTTTCTGTTTTGGAA 59.252 50.000 0.00 0.00 0.00 3.53
521 523 1.269569 GGGGCGTTTCTGTTTTGGAAG 60.270 52.381 0.00 0.00 0.00 3.46
522 524 1.269569 GGGCGTTTCTGTTTTGGAAGG 60.270 52.381 0.00 0.00 0.00 3.46
523 525 1.487482 GCGTTTCTGTTTTGGAAGGC 58.513 50.000 0.00 0.00 0.00 4.35
524 526 1.067060 GCGTTTCTGTTTTGGAAGGCT 59.933 47.619 0.00 0.00 0.00 4.58
525 527 2.731217 CGTTTCTGTTTTGGAAGGCTG 58.269 47.619 0.00 0.00 0.00 4.85
526 528 2.543653 CGTTTCTGTTTTGGAAGGCTGG 60.544 50.000 0.00 0.00 0.00 4.85
527 529 2.430694 GTTTCTGTTTTGGAAGGCTGGT 59.569 45.455 0.00 0.00 0.00 4.00
528 530 1.981256 TCTGTTTTGGAAGGCTGGTC 58.019 50.000 0.00 0.00 0.00 4.02
529 531 0.961753 CTGTTTTGGAAGGCTGGTCC 59.038 55.000 0.00 0.00 35.55 4.46
531 533 1.248486 GTTTTGGAAGGCTGGTCCTC 58.752 55.000 6.78 0.00 46.94 3.71
532 534 0.112412 TTTTGGAAGGCTGGTCCTCC 59.888 55.000 6.78 1.12 46.94 4.30
533 535 2.124507 TTTGGAAGGCTGGTCCTCCG 62.125 60.000 6.78 0.00 46.94 4.63
534 536 4.475135 GGAAGGCTGGTCCTCCGC 62.475 72.222 0.00 0.00 46.94 5.54
535 537 3.706373 GAAGGCTGGTCCTCCGCA 61.706 66.667 0.00 0.00 46.94 5.69
536 538 3.672295 GAAGGCTGGTCCTCCGCAG 62.672 68.421 0.00 0.00 46.94 5.18
537 539 4.704103 AGGCTGGTCCTCCGCAGA 62.704 66.667 0.00 0.00 43.20 4.26
538 540 4.154347 GGCTGGTCCTCCGCAGAG 62.154 72.222 0.00 0.00 40.09 3.35
539 541 3.386237 GCTGGTCCTCCGCAGAGT 61.386 66.667 0.00 0.00 38.58 3.24
540 542 2.948720 GCTGGTCCTCCGCAGAGTT 61.949 63.158 0.00 0.00 38.58 3.01
541 543 1.079543 CTGGTCCTCCGCAGAGTTG 60.080 63.158 0.00 0.00 38.58 3.16
542 544 1.821061 CTGGTCCTCCGCAGAGTTGT 61.821 60.000 0.00 0.00 38.58 3.32
543 545 0.541063 TGGTCCTCCGCAGAGTTGTA 60.541 55.000 0.00 0.00 38.58 2.41
544 546 0.824759 GGTCCTCCGCAGAGTTGTAT 59.175 55.000 0.00 0.00 38.58 2.29
545 547 1.207329 GGTCCTCCGCAGAGTTGTATT 59.793 52.381 0.00 0.00 38.58 1.89
546 548 2.271800 GTCCTCCGCAGAGTTGTATTG 58.728 52.381 0.00 0.00 38.58 1.90
547 549 1.207089 TCCTCCGCAGAGTTGTATTGG 59.793 52.381 0.00 0.00 38.58 3.16
548 550 1.656652 CTCCGCAGAGTTGTATTGGG 58.343 55.000 0.00 0.00 35.21 4.12
549 551 1.207089 CTCCGCAGAGTTGTATTGGGA 59.793 52.381 0.00 0.00 35.21 4.37
550 552 1.626321 TCCGCAGAGTTGTATTGGGAA 59.374 47.619 0.00 0.00 0.00 3.97
551 553 1.737793 CCGCAGAGTTGTATTGGGAAC 59.262 52.381 0.00 0.00 0.00 3.62
552 554 2.615493 CCGCAGAGTTGTATTGGGAACT 60.615 50.000 0.00 0.00 35.07 3.01
553 555 2.673368 CGCAGAGTTGTATTGGGAACTC 59.327 50.000 0.00 0.00 45.70 3.01
558 560 5.153950 GAGTTGTATTGGGAACTCTGAGT 57.846 43.478 4.06 4.06 43.18 3.41
559 561 5.552178 GAGTTGTATTGGGAACTCTGAGTT 58.448 41.667 22.20 22.20 43.18 3.01
573 575 5.729510 ACTCTGAGTTCAATCTAAGCTTCC 58.270 41.667 0.00 0.00 0.00 3.46
574 576 5.483583 ACTCTGAGTTCAATCTAAGCTTCCT 59.516 40.000 0.00 0.00 0.00 3.36
575 577 6.665680 ACTCTGAGTTCAATCTAAGCTTCCTA 59.334 38.462 0.00 0.00 0.00 2.94
576 578 7.106439 TCTGAGTTCAATCTAAGCTTCCTAG 57.894 40.000 0.00 0.00 0.00 3.02
577 579 6.892456 TCTGAGTTCAATCTAAGCTTCCTAGA 59.108 38.462 0.00 0.00 0.00 2.43
578 580 6.868622 TGAGTTCAATCTAAGCTTCCTAGAC 58.131 40.000 0.00 0.00 0.00 2.59
579 581 6.665680 TGAGTTCAATCTAAGCTTCCTAGACT 59.334 38.462 0.00 0.00 0.00 3.24
580 582 6.872920 AGTTCAATCTAAGCTTCCTAGACTG 58.127 40.000 0.00 0.38 0.00 3.51
581 583 6.439058 AGTTCAATCTAAGCTTCCTAGACTGT 59.561 38.462 0.00 0.00 0.00 3.55
582 584 6.859112 TCAATCTAAGCTTCCTAGACTGTT 57.141 37.500 0.00 0.00 0.00 3.16
583 585 6.868622 TCAATCTAAGCTTCCTAGACTGTTC 58.131 40.000 0.00 0.00 0.00 3.18
584 586 6.437477 TCAATCTAAGCTTCCTAGACTGTTCA 59.563 38.462 0.00 0.00 0.00 3.18
585 587 7.124901 TCAATCTAAGCTTCCTAGACTGTTCAT 59.875 37.037 0.00 0.00 0.00 2.57
586 588 6.214191 TCTAAGCTTCCTAGACTGTTCATG 57.786 41.667 0.00 0.00 0.00 3.07
587 589 5.952347 TCTAAGCTTCCTAGACTGTTCATGA 59.048 40.000 0.00 0.00 0.00 3.07
588 590 5.690464 AAGCTTCCTAGACTGTTCATGAT 57.310 39.130 0.00 0.00 0.00 2.45
589 591 5.021033 AGCTTCCTAGACTGTTCATGATG 57.979 43.478 0.00 0.00 0.00 3.07
590 592 4.469227 AGCTTCCTAGACTGTTCATGATGT 59.531 41.667 0.00 0.00 0.00 3.06
591 593 5.658634 AGCTTCCTAGACTGTTCATGATGTA 59.341 40.000 0.00 0.00 0.00 2.29
592 594 6.155221 AGCTTCCTAGACTGTTCATGATGTAA 59.845 38.462 0.00 0.00 0.00 2.41
593 595 6.256757 GCTTCCTAGACTGTTCATGATGTAAC 59.743 42.308 0.00 0.00 0.00 2.50
594 596 7.482169 TTCCTAGACTGTTCATGATGTAACT 57.518 36.000 0.00 0.00 0.00 2.24
595 597 7.101652 TCCTAGACTGTTCATGATGTAACTC 57.898 40.000 0.00 0.00 0.00 3.01
596 598 6.892456 TCCTAGACTGTTCATGATGTAACTCT 59.108 38.462 0.00 0.00 0.00 3.24
597 599 7.067615 TCCTAGACTGTTCATGATGTAACTCTC 59.932 40.741 0.00 0.00 0.00 3.20
598 600 6.849085 AGACTGTTCATGATGTAACTCTCT 57.151 37.500 0.00 0.00 0.00 3.10
599 601 7.238486 AGACTGTTCATGATGTAACTCTCTT 57.762 36.000 0.00 0.00 0.00 2.85
600 602 7.319646 AGACTGTTCATGATGTAACTCTCTTC 58.680 38.462 0.00 0.00 0.00 2.87
601 603 6.402222 ACTGTTCATGATGTAACTCTCTTCC 58.598 40.000 0.00 0.00 0.00 3.46
602 604 5.734720 TGTTCATGATGTAACTCTCTTCCC 58.265 41.667 0.00 0.00 0.00 3.97
603 605 5.485353 TGTTCATGATGTAACTCTCTTCCCT 59.515 40.000 0.00 0.00 0.00 4.20
604 606 6.667848 TGTTCATGATGTAACTCTCTTCCCTA 59.332 38.462 0.00 0.00 0.00 3.53
605 607 7.345653 TGTTCATGATGTAACTCTCTTCCCTAT 59.654 37.037 0.00 0.00 0.00 2.57
606 608 7.531857 TCATGATGTAACTCTCTTCCCTATC 57.468 40.000 0.00 0.00 0.00 2.08
607 609 7.301420 TCATGATGTAACTCTCTTCCCTATCT 58.699 38.462 0.00 0.00 0.00 1.98
608 610 8.448816 TCATGATGTAACTCTCTTCCCTATCTA 58.551 37.037 0.00 0.00 0.00 1.98
609 611 9.083422 CATGATGTAACTCTCTTCCCTATCTAA 57.917 37.037 0.00 0.00 0.00 2.10
610 612 9.836179 ATGATGTAACTCTCTTCCCTATCTAAT 57.164 33.333 0.00 0.00 0.00 1.73
618 620 9.238368 ACTCTCTTCCCTATCTAATAAAGATCG 57.762 37.037 0.00 0.00 44.17 3.69
619 621 8.582657 TCTCTTCCCTATCTAATAAAGATCGG 57.417 38.462 0.00 0.00 44.17 4.18
620 622 7.122948 TCTCTTCCCTATCTAATAAAGATCGGC 59.877 40.741 1.09 0.00 43.29 5.54
621 623 5.934402 TCCCTATCTAATAAAGATCGGCC 57.066 43.478 0.00 0.00 43.29 6.13
622 624 5.338632 TCCCTATCTAATAAAGATCGGCCA 58.661 41.667 2.24 0.00 43.29 5.36
623 625 5.783360 TCCCTATCTAATAAAGATCGGCCAA 59.217 40.000 2.24 0.00 43.29 4.52
624 626 5.875359 CCCTATCTAATAAAGATCGGCCAAC 59.125 44.000 2.24 0.00 43.29 3.77
625 627 5.577164 CCTATCTAATAAAGATCGGCCAACG 59.423 44.000 2.24 0.00 44.17 4.10
626 628 3.724374 TCTAATAAAGATCGGCCAACGG 58.276 45.455 2.24 0.00 44.45 4.44
627 629 5.334252 ATCTAATAAAGATCGGCCAACGGC 61.334 45.833 2.24 0.00 44.24 5.68
720 723 0.467290 AGCCCTCGAGATGTCTCTCC 60.467 60.000 15.71 0.00 44.36 3.71
724 727 1.686428 CCTCGAGATGTCTCTCCCCAA 60.686 57.143 15.71 0.00 44.36 4.12
728 731 0.842635 AGATGTCTCTCCCCAATGCC 59.157 55.000 0.00 0.00 0.00 4.40
761 764 2.811317 CAGCTCGTCGGTGCTTCC 60.811 66.667 10.16 0.00 40.81 3.46
805 818 4.157120 GCAGTGGGGCCGTATCGT 62.157 66.667 0.00 0.00 0.00 3.73
806 819 2.202878 CAGTGGGGCCGTATCGTG 60.203 66.667 0.00 0.00 0.00 4.35
823 836 4.483243 GGCGATTTGGGGCGAGGA 62.483 66.667 0.00 0.00 0.00 3.71
829 842 2.608970 ATTTGGGGCGAGGACGGATG 62.609 60.000 0.00 0.00 40.15 3.51
832 845 3.917760 GGGCGAGGACGGATGAGG 61.918 72.222 0.00 0.00 40.15 3.86
835 848 2.808315 CGAGGACGGATGAGGTGG 59.192 66.667 0.00 0.00 35.72 4.61
838 851 0.395862 GAGGACGGATGAGGTGGAGA 60.396 60.000 0.00 0.00 0.00 3.71
839 852 0.396417 AGGACGGATGAGGTGGAGAG 60.396 60.000 0.00 0.00 0.00 3.20
840 853 1.439644 GACGGATGAGGTGGAGAGC 59.560 63.158 0.00 0.00 0.00 4.09
841 854 1.305297 ACGGATGAGGTGGAGAGCA 60.305 57.895 0.00 0.00 0.00 4.26
842 855 1.326213 ACGGATGAGGTGGAGAGCAG 61.326 60.000 0.00 0.00 0.00 4.24
843 856 1.039785 CGGATGAGGTGGAGAGCAGA 61.040 60.000 0.00 0.00 0.00 4.26
844 857 0.752054 GGATGAGGTGGAGAGCAGAG 59.248 60.000 0.00 0.00 0.00 3.35
845 858 0.104671 GATGAGGTGGAGAGCAGAGC 59.895 60.000 0.00 0.00 0.00 4.09
846 859 0.616964 ATGAGGTGGAGAGCAGAGCA 60.617 55.000 0.00 0.00 0.00 4.26
847 860 0.833409 TGAGGTGGAGAGCAGAGCAA 60.833 55.000 0.00 0.00 0.00 3.91
848 861 0.108233 GAGGTGGAGAGCAGAGCAAG 60.108 60.000 0.00 0.00 0.00 4.01
849 862 1.078567 GGTGGAGAGCAGAGCAAGG 60.079 63.158 0.00 0.00 0.00 3.61
850 863 1.744741 GTGGAGAGCAGAGCAAGGC 60.745 63.158 0.00 0.00 0.00 4.35
851 864 2.511145 GGAGAGCAGAGCAAGGCG 60.511 66.667 0.00 0.00 34.54 5.52
852 865 2.575993 GAGAGCAGAGCAAGGCGA 59.424 61.111 0.00 0.00 34.54 5.54
876 889 3.334691 CGAATGGAGCTGTGGAAAACTA 58.665 45.455 0.00 0.00 0.00 2.24
904 917 0.984230 TGGTGAAAGGGCGAAGAGAT 59.016 50.000 0.00 0.00 0.00 2.75
923 936 6.226787 AGAGATAATCCAACGATCCATGTTC 58.773 40.000 0.00 0.00 0.00 3.18
924 937 5.308825 AGATAATCCAACGATCCATGTTCC 58.691 41.667 0.00 0.00 0.00 3.62
925 938 3.364460 AATCCAACGATCCATGTTCCA 57.636 42.857 0.00 0.00 0.00 3.53
928 941 1.599071 CCAACGATCCATGTTCCATCG 59.401 52.381 10.40 10.40 44.06 3.84
950 976 1.005512 GGCGACCGGGCAAAATTTT 60.006 52.632 8.76 0.00 41.77 1.82
966 992 2.612095 TTTTGGCCGGTCGACCAACT 62.612 55.000 32.80 0.00 45.42 3.16
967 993 2.999739 TTTGGCCGGTCGACCAACTC 63.000 60.000 32.80 18.89 45.42 3.01
998 2489 3.643792 TCACCCATAAACAAAACAAGGGG 59.356 43.478 0.00 0.00 39.15 4.79
1003 2494 4.694982 CCATAAACAAAACAAGGGGAATGC 59.305 41.667 0.00 0.00 0.00 3.56
1016 2507 1.207811 GGGAATGCCAATCACCCAAAG 59.792 52.381 0.00 0.00 40.20 2.77
1017 2508 1.207811 GGAATGCCAATCACCCAAAGG 59.792 52.381 0.00 0.00 40.04 3.11
1089 2683 2.105128 CTCCTCTACAAGCCGCGG 59.895 66.667 24.05 24.05 0.00 6.46
1635 3229 0.472471 TCACCTTCAACACCCTGGTC 59.528 55.000 0.00 0.00 0.00 4.02
1883 3477 1.731613 GTGACGTCGACGCCATCAA 60.732 57.895 35.92 14.63 44.43 2.57
2133 3727 4.457496 CTGTCCAGCGGGCATCGT 62.457 66.667 0.00 0.00 41.72 3.73
2233 3827 1.306141 AAGATGGCGGAGAGTGGGA 60.306 57.895 0.00 0.00 0.00 4.37
2235 3829 0.692419 AGATGGCGGAGAGTGGGATT 60.692 55.000 0.00 0.00 0.00 3.01
2453 4069 4.203654 TGCAAGGCAAAATGCATAATGA 57.796 36.364 14.08 0.00 46.87 2.57
2455 4071 5.915175 TGCAAGGCAAAATGCATAATGATA 58.085 33.333 14.08 0.00 46.87 2.15
2633 4281 5.802451 CCACCTGTATATCGATCTCATTTCG 59.198 44.000 0.00 0.00 37.94 3.46
2676 4324 5.058490 TGTAAGAAACCGAATCGAAAACCT 58.942 37.500 3.36 0.00 0.00 3.50
2677 4325 5.528320 TGTAAGAAACCGAATCGAAAACCTT 59.472 36.000 3.36 3.66 0.00 3.50
2708 4359 3.056328 GCTCGCACCCCTTTCCAC 61.056 66.667 0.00 0.00 0.00 4.02
2724 4375 6.880529 CCCTTTCCACTAATTTTGCAATCAAT 59.119 34.615 0.00 0.00 31.33 2.57
2725 4376 7.148373 CCCTTTCCACTAATTTTGCAATCAATG 60.148 37.037 0.00 0.00 31.33 2.82
2751 4402 8.514594 GGAAATACATCAGTCTGTTTTGAATCA 58.485 33.333 0.00 0.00 0.00 2.57
2789 4441 5.008217 CAGTTTACATGAGAAACCGAAACCA 59.992 40.000 18.24 0.00 37.48 3.67
2811 4463 7.053498 ACCAAATCAAAAACCTTAACAATGCT 58.947 30.769 0.00 0.00 0.00 3.79
2890 4542 2.744202 GCGAGAACAAGTGATGGTGATT 59.256 45.455 0.00 0.00 0.00 2.57
2963 4615 1.695242 TGGTCGTAGCCCAAAGAGAAA 59.305 47.619 0.00 0.00 0.00 2.52
2969 4621 5.063564 GTCGTAGCCCAAAGAGAAATGTAAG 59.936 44.000 0.00 0.00 0.00 2.34
3050 4702 2.497675 TGGAGAATCTGGAGAAACCTCG 59.502 50.000 0.00 0.00 39.86 4.63
3088 4740 1.203428 TGGGAGGGGATGAAGACAAGA 60.203 52.381 0.00 0.00 0.00 3.02
3096 4748 2.160417 GGATGAAGACAAGAACAAGGCG 59.840 50.000 0.00 0.00 0.00 5.52
3098 4750 2.483876 TGAAGACAAGAACAAGGCGAG 58.516 47.619 0.00 0.00 0.00 5.03
3099 4751 1.801178 GAAGACAAGAACAAGGCGAGG 59.199 52.381 0.00 0.00 0.00 4.63
3100 4752 0.035458 AGACAAGAACAAGGCGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
3101 4753 0.955919 GACAAGAACAAGGCGAGGGG 60.956 60.000 0.00 0.00 0.00 4.79
3102 4754 2.034221 AAGAACAAGGCGAGGGGC 59.966 61.111 0.00 0.00 42.51 5.80
3168 4820 2.038007 AGAGAGCAAGCCGGGAGA 59.962 61.111 2.18 0.00 0.00 3.71
3206 4858 5.007921 TCGTAAATTCGACGACCATCATCTA 59.992 40.000 10.55 0.00 43.99 1.98
3212 4864 4.001652 TCGACGACCATCATCTATCTACC 58.998 47.826 0.00 0.00 0.00 3.18
3251 4903 1.476488 ACCAGCAAAGAACAACACACC 59.524 47.619 0.00 0.00 0.00 4.16
3297 4949 7.308229 GCACTTTATATGGCCAGAGATACAAAG 60.308 40.741 13.05 12.11 28.94 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.500116 GCTCCTCTGTCGGTCGGC 62.500 72.222 0.00 0.00 0.00 5.54
52 53 0.535102 CTCCCCATGTGGCCGATTAC 60.535 60.000 0.00 0.00 0.00 1.89
56 57 3.399181 GTCTCCCCATGTGGCCGA 61.399 66.667 0.00 0.00 0.00 5.54
64 65 0.251341 GTTGGTTGCAGTCTCCCCAT 60.251 55.000 0.00 0.00 0.00 4.00
109 110 1.638467 GATTGCGGCTCTTGCTACG 59.362 57.895 0.00 0.00 39.59 3.51
110 111 1.084370 ACGATTGCGGCTCTTGCTAC 61.084 55.000 0.00 0.00 43.17 3.58
111 112 1.083806 CACGATTGCGGCTCTTGCTA 61.084 55.000 0.00 0.00 43.17 3.49
113 114 2.099062 CACGATTGCGGCTCTTGC 59.901 61.111 0.00 0.00 43.17 4.01
114 115 2.099062 GCACGATTGCGGCTCTTG 59.901 61.111 0.00 0.00 43.17 3.02
134 136 0.462581 TCATCGGTTGCAGCTCCATC 60.463 55.000 0.00 0.00 0.00 3.51
165 167 1.062685 CGACGATCGTCCCTCACTG 59.937 63.158 35.48 19.76 41.76 3.66
175 177 2.497092 CTCACCGCAACGACGATCG 61.497 63.158 14.88 14.88 46.93 3.69
198 200 1.216977 CCGACATCACCTTGCGGTA 59.783 57.895 0.00 0.00 43.24 4.02
204 206 1.672356 GCAGCACCGACATCACCTT 60.672 57.895 0.00 0.00 0.00 3.50
285 287 2.193536 GGCAACACTGTCCCACCAC 61.194 63.158 0.00 0.00 0.00 4.16
286 288 2.194597 GGCAACACTGTCCCACCA 59.805 61.111 0.00 0.00 0.00 4.17
287 289 2.978010 CGGCAACACTGTCCCACC 60.978 66.667 0.00 0.00 0.00 4.61
288 290 2.725203 TAGCGGCAACACTGTCCCAC 62.725 60.000 1.45 0.00 0.00 4.61
289 291 1.836999 ATAGCGGCAACACTGTCCCA 61.837 55.000 1.45 0.00 0.00 4.37
290 292 0.177141 TATAGCGGCAACACTGTCCC 59.823 55.000 1.45 0.00 0.00 4.46
291 293 1.287425 GTATAGCGGCAACACTGTCC 58.713 55.000 1.45 0.00 0.00 4.02
292 294 1.287425 GGTATAGCGGCAACACTGTC 58.713 55.000 1.45 0.00 0.00 3.51
293 295 0.107848 GGGTATAGCGGCAACACTGT 60.108 55.000 1.45 0.00 0.00 3.55
294 296 0.107897 TGGGTATAGCGGCAACACTG 60.108 55.000 1.45 0.00 0.00 3.66
295 297 0.616371 TTGGGTATAGCGGCAACACT 59.384 50.000 1.45 0.00 0.00 3.55
296 298 1.014352 CTTGGGTATAGCGGCAACAC 58.986 55.000 1.45 0.00 0.00 3.32
297 299 0.746563 GCTTGGGTATAGCGGCAACA 60.747 55.000 1.45 0.00 0.00 3.33
298 300 0.746563 TGCTTGGGTATAGCGGCAAC 60.747 55.000 1.45 0.00 41.54 4.17
299 301 0.746563 GTGCTTGGGTATAGCGGCAA 60.747 55.000 14.22 5.71 41.54 4.52
300 302 1.153249 GTGCTTGGGTATAGCGGCA 60.153 57.895 1.45 10.33 41.54 5.69
301 303 0.535102 ATGTGCTTGGGTATAGCGGC 60.535 55.000 0.00 0.00 41.54 6.53
302 304 2.413837 GTATGTGCTTGGGTATAGCGG 58.586 52.381 0.00 0.00 41.54 5.52
303 305 2.058798 CGTATGTGCTTGGGTATAGCG 58.941 52.381 0.00 0.00 41.54 4.26
304 306 3.107642 ACGTATGTGCTTGGGTATAGC 57.892 47.619 0.00 0.00 39.10 2.97
305 307 4.521639 TCCTACGTATGTGCTTGGGTATAG 59.478 45.833 0.00 0.00 0.00 1.31
306 308 4.472496 TCCTACGTATGTGCTTGGGTATA 58.528 43.478 0.00 0.00 0.00 1.47
307 309 3.302161 TCCTACGTATGTGCTTGGGTAT 58.698 45.455 0.00 0.00 0.00 2.73
308 310 2.737544 TCCTACGTATGTGCTTGGGTA 58.262 47.619 0.00 0.00 0.00 3.69
309 311 1.563924 TCCTACGTATGTGCTTGGGT 58.436 50.000 0.00 0.00 0.00 4.51
310 312 2.093658 AGTTCCTACGTATGTGCTTGGG 60.094 50.000 0.00 0.00 0.00 4.12
311 313 3.247006 AGTTCCTACGTATGTGCTTGG 57.753 47.619 0.00 0.00 0.00 3.61
312 314 4.688879 TCAAAGTTCCTACGTATGTGCTTG 59.311 41.667 0.00 0.00 0.00 4.01
313 315 4.689345 GTCAAAGTTCCTACGTATGTGCTT 59.311 41.667 0.00 0.37 0.00 3.91
314 316 4.243270 GTCAAAGTTCCTACGTATGTGCT 58.757 43.478 0.00 0.00 0.00 4.40
315 317 3.991773 TGTCAAAGTTCCTACGTATGTGC 59.008 43.478 0.00 0.00 0.00 4.57
316 318 4.089493 CGTGTCAAAGTTCCTACGTATGTG 59.911 45.833 0.00 0.00 0.00 3.21
317 319 4.232221 CGTGTCAAAGTTCCTACGTATGT 58.768 43.478 0.00 0.00 0.00 2.29
318 320 3.611113 CCGTGTCAAAGTTCCTACGTATG 59.389 47.826 0.00 0.00 0.00 2.39
319 321 3.256631 ACCGTGTCAAAGTTCCTACGTAT 59.743 43.478 0.00 0.00 0.00 3.06
320 322 2.622942 ACCGTGTCAAAGTTCCTACGTA 59.377 45.455 0.00 0.00 0.00 3.57
321 323 1.410153 ACCGTGTCAAAGTTCCTACGT 59.590 47.619 0.00 0.00 0.00 3.57
322 324 1.790623 CACCGTGTCAAAGTTCCTACG 59.209 52.381 0.00 0.00 0.00 3.51
323 325 2.140717 CCACCGTGTCAAAGTTCCTAC 58.859 52.381 0.00 0.00 0.00 3.18
324 326 1.764134 ACCACCGTGTCAAAGTTCCTA 59.236 47.619 0.00 0.00 0.00 2.94
325 327 0.544697 ACCACCGTGTCAAAGTTCCT 59.455 50.000 0.00 0.00 0.00 3.36
326 328 1.385528 AACCACCGTGTCAAAGTTCC 58.614 50.000 0.00 0.00 0.00 3.62
327 329 4.062991 AGATAACCACCGTGTCAAAGTTC 58.937 43.478 0.00 0.00 0.00 3.01
328 330 4.081322 AGATAACCACCGTGTCAAAGTT 57.919 40.909 0.00 0.00 0.00 2.66
329 331 3.764237 AGATAACCACCGTGTCAAAGT 57.236 42.857 0.00 0.00 0.00 2.66
330 332 3.364964 GCAAGATAACCACCGTGTCAAAG 60.365 47.826 0.00 0.00 0.00 2.77
331 333 2.550606 GCAAGATAACCACCGTGTCAAA 59.449 45.455 0.00 0.00 0.00 2.69
332 334 2.147958 GCAAGATAACCACCGTGTCAA 58.852 47.619 0.00 0.00 0.00 3.18
333 335 1.346395 AGCAAGATAACCACCGTGTCA 59.654 47.619 0.00 0.00 0.00 3.58
334 336 1.732259 CAGCAAGATAACCACCGTGTC 59.268 52.381 0.00 0.00 0.00 3.67
335 337 1.808411 CAGCAAGATAACCACCGTGT 58.192 50.000 0.00 0.00 0.00 4.49
336 338 0.447801 GCAGCAAGATAACCACCGTG 59.552 55.000 0.00 0.00 0.00 4.94
337 339 0.036164 TGCAGCAAGATAACCACCGT 59.964 50.000 0.00 0.00 0.00 4.83
338 340 0.447801 GTGCAGCAAGATAACCACCG 59.552 55.000 0.00 0.00 0.00 4.94
339 341 1.470098 CAGTGCAGCAAGATAACCACC 59.530 52.381 0.00 0.00 0.00 4.61
340 342 1.470098 CCAGTGCAGCAAGATAACCAC 59.530 52.381 0.00 0.00 0.00 4.16
341 343 1.350684 TCCAGTGCAGCAAGATAACCA 59.649 47.619 0.00 0.00 0.00 3.67
342 344 2.012673 CTCCAGTGCAGCAAGATAACC 58.987 52.381 0.00 0.00 0.00 2.85
343 345 2.012673 CCTCCAGTGCAGCAAGATAAC 58.987 52.381 0.00 0.00 0.00 1.89
344 346 1.908619 TCCTCCAGTGCAGCAAGATAA 59.091 47.619 0.00 0.00 0.00 1.75
345 347 1.571955 TCCTCCAGTGCAGCAAGATA 58.428 50.000 0.00 0.00 0.00 1.98
346 348 0.917533 ATCCTCCAGTGCAGCAAGAT 59.082 50.000 0.00 0.00 0.00 2.40
347 349 1.571955 TATCCTCCAGTGCAGCAAGA 58.428 50.000 0.00 0.00 0.00 3.02
348 350 2.219458 CATATCCTCCAGTGCAGCAAG 58.781 52.381 0.00 0.00 0.00 4.01
349 351 1.134007 CCATATCCTCCAGTGCAGCAA 60.134 52.381 0.00 0.00 0.00 3.91
350 352 0.471191 CCATATCCTCCAGTGCAGCA 59.529 55.000 0.00 0.00 0.00 4.41
351 353 0.761187 TCCATATCCTCCAGTGCAGC 59.239 55.000 0.00 0.00 0.00 5.25
352 354 3.135348 TCTTTCCATATCCTCCAGTGCAG 59.865 47.826 0.00 0.00 0.00 4.41
353 355 3.114606 TCTTTCCATATCCTCCAGTGCA 58.885 45.455 0.00 0.00 0.00 4.57
354 356 3.845781 TCTTTCCATATCCTCCAGTGC 57.154 47.619 0.00 0.00 0.00 4.40
355 357 5.994250 TCTTTCTTTCCATATCCTCCAGTG 58.006 41.667 0.00 0.00 0.00 3.66
356 358 6.642733 TTCTTTCTTTCCATATCCTCCAGT 57.357 37.500 0.00 0.00 0.00 4.00
357 359 8.530804 AATTTCTTTCTTTCCATATCCTCCAG 57.469 34.615 0.00 0.00 0.00 3.86
358 360 7.561356 GGAATTTCTTTCTTTCCATATCCTCCA 59.439 37.037 0.00 0.00 39.00 3.86
359 361 7.561356 TGGAATTTCTTTCTTTCCATATCCTCC 59.439 37.037 0.00 0.00 42.96 4.30
360 362 8.525290 TGGAATTTCTTTCTTTCCATATCCTC 57.475 34.615 0.00 0.00 42.96 3.71
361 363 8.339247 TCTGGAATTTCTTTCTTTCCATATCCT 58.661 33.333 4.24 0.00 45.76 3.24
362 364 8.525290 TCTGGAATTTCTTTCTTTCCATATCC 57.475 34.615 4.24 0.00 45.76 2.59
367 369 9.904198 AAAAATTCTGGAATTTCTTTCTTTCCA 57.096 25.926 17.90 3.80 46.76 3.53
376 378 9.431887 CACATGATCAAAAATTCTGGAATTTCT 57.568 29.630 17.90 5.51 46.76 2.52
377 379 8.662141 CCACATGATCAAAAATTCTGGAATTTC 58.338 33.333 17.90 8.87 46.76 2.17
379 381 6.596497 GCCACATGATCAAAAATTCTGGAATT 59.404 34.615 0.00 3.06 42.35 2.17
380 382 6.110707 GCCACATGATCAAAAATTCTGGAAT 58.889 36.000 0.00 0.00 0.00 3.01
381 383 5.011840 TGCCACATGATCAAAAATTCTGGAA 59.988 36.000 0.00 0.00 0.00 3.53
382 384 4.527427 TGCCACATGATCAAAAATTCTGGA 59.473 37.500 0.00 0.00 0.00 3.86
383 385 4.823157 TGCCACATGATCAAAAATTCTGG 58.177 39.130 0.00 0.00 0.00 3.86
384 386 7.262772 AGTATGCCACATGATCAAAAATTCTG 58.737 34.615 0.00 0.00 0.00 3.02
385 387 7.414222 AGTATGCCACATGATCAAAAATTCT 57.586 32.000 0.00 0.00 0.00 2.40
386 388 6.415867 CGAGTATGCCACATGATCAAAAATTC 59.584 38.462 0.00 0.00 0.00 2.17
387 389 6.267817 CGAGTATGCCACATGATCAAAAATT 58.732 36.000 0.00 0.00 0.00 1.82
388 390 5.734220 GCGAGTATGCCACATGATCAAAAAT 60.734 40.000 0.00 0.00 0.00 1.82
389 391 4.438608 GCGAGTATGCCACATGATCAAAAA 60.439 41.667 0.00 0.00 0.00 1.94
390 392 3.065233 GCGAGTATGCCACATGATCAAAA 59.935 43.478 0.00 0.00 0.00 2.44
391 393 2.613595 GCGAGTATGCCACATGATCAAA 59.386 45.455 0.00 0.00 0.00 2.69
392 394 2.212652 GCGAGTATGCCACATGATCAA 58.787 47.619 0.00 0.00 0.00 2.57
393 395 1.869774 GCGAGTATGCCACATGATCA 58.130 50.000 0.00 0.00 0.00 2.92
412 414 2.278857 CTCCAAGACGCCGATCGG 60.279 66.667 30.03 30.03 43.86 4.18
413 415 2.956964 GCTCCAAGACGCCGATCG 60.957 66.667 8.51 8.51 45.38 3.69
414 416 2.956964 CGCTCCAAGACGCCGATC 60.957 66.667 0.00 0.00 0.00 3.69
415 417 4.514577 CCGCTCCAAGACGCCGAT 62.515 66.667 0.00 0.00 0.00 4.18
417 419 3.133767 TATCCGCTCCAAGACGCCG 62.134 63.158 0.00 0.00 0.00 6.46
418 420 1.591863 GTATCCGCTCCAAGACGCC 60.592 63.158 0.00 0.00 0.00 5.68
419 421 0.459585 TTGTATCCGCTCCAAGACGC 60.460 55.000 0.00 0.00 0.00 5.19
420 422 1.134367 TCTTGTATCCGCTCCAAGACG 59.866 52.381 0.00 0.00 39.58 4.18
421 423 2.961526 TCTTGTATCCGCTCCAAGAC 57.038 50.000 0.00 0.00 39.58 3.01
422 424 3.096852 TCTTCTTGTATCCGCTCCAAGA 58.903 45.455 0.00 0.00 41.95 3.02
423 425 3.526931 TCTTCTTGTATCCGCTCCAAG 57.473 47.619 0.00 0.00 37.51 3.61
424 426 3.197766 ACATCTTCTTGTATCCGCTCCAA 59.802 43.478 0.00 0.00 0.00 3.53
425 427 2.766263 ACATCTTCTTGTATCCGCTCCA 59.234 45.455 0.00 0.00 0.00 3.86
426 428 3.126831 CACATCTTCTTGTATCCGCTCC 58.873 50.000 0.00 0.00 0.00 4.70
427 429 3.126831 CCACATCTTCTTGTATCCGCTC 58.873 50.000 0.00 0.00 0.00 5.03
428 430 2.743183 GCCACATCTTCTTGTATCCGCT 60.743 50.000 0.00 0.00 0.00 5.52
429 431 1.599542 GCCACATCTTCTTGTATCCGC 59.400 52.381 0.00 0.00 0.00 5.54
430 432 2.213499 GGCCACATCTTCTTGTATCCG 58.787 52.381 0.00 0.00 0.00 4.18
431 433 3.281727 TGGCCACATCTTCTTGTATCC 57.718 47.619 0.00 0.00 0.00 2.59
432 434 4.036027 CACATGGCCACATCTTCTTGTATC 59.964 45.833 8.16 0.00 34.35 2.24
433 435 3.949754 CACATGGCCACATCTTCTTGTAT 59.050 43.478 8.16 0.00 34.35 2.29
434 436 3.346315 CACATGGCCACATCTTCTTGTA 58.654 45.455 8.16 0.00 34.35 2.41
435 437 2.165167 CACATGGCCACATCTTCTTGT 58.835 47.619 8.16 2.21 34.35 3.16
436 438 1.475280 CCACATGGCCACATCTTCTTG 59.525 52.381 8.16 1.39 34.35 3.02
437 439 1.076024 ACCACATGGCCACATCTTCTT 59.924 47.619 8.16 0.00 39.32 2.52
438 440 0.700564 ACCACATGGCCACATCTTCT 59.299 50.000 8.16 0.00 39.32 2.85
439 441 0.813184 CACCACATGGCCACATCTTC 59.187 55.000 8.16 0.00 39.32 2.87
440 442 0.612732 CCACCACATGGCCACATCTT 60.613 55.000 8.16 0.00 43.24 2.40
441 443 1.000521 CCACCACATGGCCACATCT 60.001 57.895 8.16 0.00 43.24 2.90
442 444 3.607163 CCACCACATGGCCACATC 58.393 61.111 8.16 0.00 43.24 3.06
463 465 0.244994 AGATCTACGATGCATCCGGC 59.755 55.000 20.87 5.02 45.13 6.13
464 466 1.988063 CAGATCTACGATGCATCCGG 58.012 55.000 20.87 10.39 0.00 5.14
465 467 1.344458 GCAGATCTACGATGCATCCG 58.656 55.000 20.87 17.15 39.75 4.18
466 468 1.001293 TGGCAGATCTACGATGCATCC 59.999 52.381 20.87 5.72 41.78 3.51
467 469 2.445565 TGGCAGATCTACGATGCATC 57.554 50.000 17.10 17.10 41.78 3.91
468 470 2.103771 AGTTGGCAGATCTACGATGCAT 59.896 45.455 0.00 0.00 41.78 3.96
469 471 1.482182 AGTTGGCAGATCTACGATGCA 59.518 47.619 0.00 0.00 41.78 3.96
470 472 2.231215 AGTTGGCAGATCTACGATGC 57.769 50.000 0.00 0.00 39.25 3.91
471 473 3.738282 GCTAAGTTGGCAGATCTACGATG 59.262 47.826 6.31 0.00 0.00 3.84
472 474 3.639094 AGCTAAGTTGGCAGATCTACGAT 59.361 43.478 14.14 0.00 0.00 3.73
473 475 3.024547 AGCTAAGTTGGCAGATCTACGA 58.975 45.455 14.14 0.00 0.00 3.43
474 476 3.119291 CAGCTAAGTTGGCAGATCTACG 58.881 50.000 14.14 0.00 0.00 3.51
475 477 4.130286 ACAGCTAAGTTGGCAGATCTAC 57.870 45.455 14.14 0.00 0.00 2.59
476 478 4.507710 CAACAGCTAAGTTGGCAGATCTA 58.492 43.478 14.14 0.00 43.89 1.98
477 479 3.341823 CAACAGCTAAGTTGGCAGATCT 58.658 45.455 14.14 0.00 43.89 2.75
478 480 2.159462 GCAACAGCTAAGTTGGCAGATC 60.159 50.000 14.14 0.00 46.81 2.75
479 481 1.815003 GCAACAGCTAAGTTGGCAGAT 59.185 47.619 14.14 0.00 46.81 2.90
480 482 1.202806 AGCAACAGCTAAGTTGGCAGA 60.203 47.619 14.14 0.00 46.81 4.26
481 483 1.068748 CAGCAACAGCTAAGTTGGCAG 60.069 52.381 14.14 8.06 46.81 4.85
482 484 0.953727 CAGCAACAGCTAAGTTGGCA 59.046 50.000 14.14 0.00 46.81 4.92
483 485 0.242017 CCAGCAACAGCTAAGTTGGC 59.758 55.000 16.23 2.44 46.81 4.52
484 486 0.883833 CCCAGCAACAGCTAAGTTGG 59.116 55.000 16.23 11.97 46.81 3.77
486 488 0.895559 GCCCCAGCAACAGCTAAGTT 60.896 55.000 0.00 0.00 36.70 2.66
487 489 1.303643 GCCCCAGCAACAGCTAAGT 60.304 57.895 0.00 0.00 36.70 2.24
488 490 2.401766 CGCCCCAGCAACAGCTAAG 61.402 63.158 0.00 0.00 39.83 2.18
489 491 2.359850 CGCCCCAGCAACAGCTAA 60.360 61.111 0.00 0.00 39.83 3.09
490 492 2.690653 AAACGCCCCAGCAACAGCTA 62.691 55.000 0.00 0.00 39.83 3.32
491 493 4.586235 AACGCCCCAGCAACAGCT 62.586 61.111 0.00 0.00 39.83 4.24
492 494 3.558099 GAAACGCCCCAGCAACAGC 62.558 63.158 0.00 0.00 39.83 4.40
493 495 1.898574 AGAAACGCCCCAGCAACAG 60.899 57.895 0.00 0.00 39.83 3.16
494 496 2.192861 CAGAAACGCCCCAGCAACA 61.193 57.895 0.00 0.00 39.83 3.33
495 497 1.734388 AACAGAAACGCCCCAGCAAC 61.734 55.000 0.00 0.00 39.83 4.17
496 498 1.040339 AAACAGAAACGCCCCAGCAA 61.040 50.000 0.00 0.00 39.83 3.91
497 499 1.040339 AAAACAGAAACGCCCCAGCA 61.040 50.000 0.00 0.00 39.83 4.41
498 500 0.597377 CAAAACAGAAACGCCCCAGC 60.597 55.000 0.00 0.00 0.00 4.85
499 501 0.031994 CCAAAACAGAAACGCCCCAG 59.968 55.000 0.00 0.00 0.00 4.45
500 502 0.395862 TCCAAAACAGAAACGCCCCA 60.396 50.000 0.00 0.00 0.00 4.96
501 503 0.747852 TTCCAAAACAGAAACGCCCC 59.252 50.000 0.00 0.00 0.00 5.80
502 504 1.269569 CCTTCCAAAACAGAAACGCCC 60.270 52.381 0.00 0.00 0.00 6.13
503 505 1.868109 GCCTTCCAAAACAGAAACGCC 60.868 52.381 0.00 0.00 0.00 5.68
504 506 1.067060 AGCCTTCCAAAACAGAAACGC 59.933 47.619 0.00 0.00 0.00 4.84
505 507 2.543653 CCAGCCTTCCAAAACAGAAACG 60.544 50.000 0.00 0.00 0.00 3.60
506 508 2.430694 ACCAGCCTTCCAAAACAGAAAC 59.569 45.455 0.00 0.00 0.00 2.78
507 509 2.693074 GACCAGCCTTCCAAAACAGAAA 59.307 45.455 0.00 0.00 0.00 2.52
508 510 2.306847 GACCAGCCTTCCAAAACAGAA 58.693 47.619 0.00 0.00 0.00 3.02
509 511 1.478654 GGACCAGCCTTCCAAAACAGA 60.479 52.381 0.00 0.00 32.82 3.41
510 512 0.961753 GGACCAGCCTTCCAAAACAG 59.038 55.000 0.00 0.00 32.82 3.16
511 513 3.125520 GGACCAGCCTTCCAAAACA 57.874 52.632 0.00 0.00 32.82 2.83
521 523 4.154347 CTCTGCGGAGGACCAGCC 62.154 72.222 15.27 0.00 36.03 4.85
522 524 2.948720 AACTCTGCGGAGGACCAGC 61.949 63.158 26.07 0.00 43.46 4.85
523 525 1.079543 CAACTCTGCGGAGGACCAG 60.080 63.158 26.07 7.43 43.46 4.00
524 526 0.541063 TACAACTCTGCGGAGGACCA 60.541 55.000 26.07 6.31 43.46 4.02
525 527 0.824759 ATACAACTCTGCGGAGGACC 59.175 55.000 26.07 0.00 43.46 4.46
526 528 2.271800 CAATACAACTCTGCGGAGGAC 58.728 52.381 26.07 0.00 43.46 3.85
527 529 1.207089 CCAATACAACTCTGCGGAGGA 59.793 52.381 26.07 9.10 43.46 3.71
528 530 1.656652 CCAATACAACTCTGCGGAGG 58.343 55.000 26.07 12.01 43.46 4.30
529 531 1.207089 TCCCAATACAACTCTGCGGAG 59.793 52.381 21.32 21.32 44.62 4.63
530 532 1.271856 TCCCAATACAACTCTGCGGA 58.728 50.000 0.00 0.00 0.00 5.54
531 533 1.737793 GTTCCCAATACAACTCTGCGG 59.262 52.381 0.00 0.00 0.00 5.69
532 534 2.673368 GAGTTCCCAATACAACTCTGCG 59.327 50.000 4.85 0.00 43.54 5.18
536 538 5.153950 ACTCAGAGTTCCCAATACAACTC 57.846 43.478 0.00 4.01 46.10 3.01
537 539 5.552178 GAACTCAGAGTTCCCAATACAACT 58.448 41.667 27.14 0.00 46.68 3.16
538 540 5.864628 GAACTCAGAGTTCCCAATACAAC 57.135 43.478 27.14 4.15 46.68 3.32
549 551 6.013812 AGGAAGCTTAGATTGAACTCAGAGTT 60.014 38.462 16.11 16.11 41.95 3.01
550 552 5.483583 AGGAAGCTTAGATTGAACTCAGAGT 59.516 40.000 0.00 0.00 0.00 3.24
551 553 5.976458 AGGAAGCTTAGATTGAACTCAGAG 58.024 41.667 0.00 0.00 0.00 3.35
552 554 6.892456 TCTAGGAAGCTTAGATTGAACTCAGA 59.108 38.462 0.00 0.00 0.00 3.27
553 555 6.978080 GTCTAGGAAGCTTAGATTGAACTCAG 59.022 42.308 0.00 0.00 30.45 3.35
554 556 6.665680 AGTCTAGGAAGCTTAGATTGAACTCA 59.334 38.462 0.00 0.00 30.45 3.41
555 557 6.978080 CAGTCTAGGAAGCTTAGATTGAACTC 59.022 42.308 12.54 0.00 37.16 3.01
556 558 6.439058 ACAGTCTAGGAAGCTTAGATTGAACT 59.561 38.462 20.77 8.31 37.16 3.01
557 559 6.635755 ACAGTCTAGGAAGCTTAGATTGAAC 58.364 40.000 20.77 6.53 37.16 3.18
558 560 6.859112 ACAGTCTAGGAAGCTTAGATTGAA 57.141 37.500 20.77 0.00 37.16 2.69
559 561 6.437477 TGAACAGTCTAGGAAGCTTAGATTGA 59.563 38.462 20.77 6.26 37.16 2.57
560 562 6.634805 TGAACAGTCTAGGAAGCTTAGATTG 58.365 40.000 15.09 15.09 39.44 2.67
561 563 6.859112 TGAACAGTCTAGGAAGCTTAGATT 57.141 37.500 0.00 0.00 30.45 2.40
562 564 6.609212 TCATGAACAGTCTAGGAAGCTTAGAT 59.391 38.462 0.00 0.00 30.45 1.98
563 565 5.952347 TCATGAACAGTCTAGGAAGCTTAGA 59.048 40.000 0.00 0.00 0.00 2.10
564 566 6.214191 TCATGAACAGTCTAGGAAGCTTAG 57.786 41.667 0.00 0.00 0.00 2.18
565 567 6.155221 ACATCATGAACAGTCTAGGAAGCTTA 59.845 38.462 0.00 0.00 0.00 3.09
566 568 5.046014 ACATCATGAACAGTCTAGGAAGCTT 60.046 40.000 0.00 0.00 0.00 3.74
567 569 4.469227 ACATCATGAACAGTCTAGGAAGCT 59.531 41.667 0.00 0.00 0.00 3.74
568 570 4.764172 ACATCATGAACAGTCTAGGAAGC 58.236 43.478 0.00 0.00 0.00 3.86
569 571 7.551585 AGTTACATCATGAACAGTCTAGGAAG 58.448 38.462 0.00 0.00 0.00 3.46
570 572 7.397476 AGAGTTACATCATGAACAGTCTAGGAA 59.603 37.037 0.00 0.00 0.00 3.36
571 573 6.892456 AGAGTTACATCATGAACAGTCTAGGA 59.108 38.462 0.00 0.00 0.00 2.94
572 574 7.068103 AGAGAGTTACATCATGAACAGTCTAGG 59.932 40.741 0.00 0.00 0.00 3.02
573 575 7.995289 AGAGAGTTACATCATGAACAGTCTAG 58.005 38.462 0.00 0.00 0.00 2.43
574 576 7.946381 AGAGAGTTACATCATGAACAGTCTA 57.054 36.000 0.00 0.00 0.00 2.59
575 577 6.849085 AGAGAGTTACATCATGAACAGTCT 57.151 37.500 0.00 1.79 0.00 3.24
576 578 6.533367 GGAAGAGAGTTACATCATGAACAGTC 59.467 42.308 0.00 0.00 0.00 3.51
577 579 6.402222 GGAAGAGAGTTACATCATGAACAGT 58.598 40.000 0.00 1.56 0.00 3.55
578 580 5.814705 GGGAAGAGAGTTACATCATGAACAG 59.185 44.000 0.00 0.00 0.00 3.16
579 581 5.485353 AGGGAAGAGAGTTACATCATGAACA 59.515 40.000 0.00 0.00 0.00 3.18
580 582 5.983540 AGGGAAGAGAGTTACATCATGAAC 58.016 41.667 0.00 0.00 0.00 3.18
581 583 7.786943 AGATAGGGAAGAGAGTTACATCATGAA 59.213 37.037 0.00 0.00 0.00 2.57
582 584 7.301420 AGATAGGGAAGAGAGTTACATCATGA 58.699 38.462 0.00 0.00 0.00 3.07
583 585 7.537596 AGATAGGGAAGAGAGTTACATCATG 57.462 40.000 0.00 0.00 0.00 3.07
584 586 9.836179 ATTAGATAGGGAAGAGAGTTACATCAT 57.164 33.333 0.00 0.00 0.00 2.45
592 594 9.238368 CGATCTTTATTAGATAGGGAAGAGAGT 57.762 37.037 0.00 0.00 43.75 3.24
593 595 8.682710 CCGATCTTTATTAGATAGGGAAGAGAG 58.317 40.741 6.15 0.00 46.68 3.20
594 596 8.582657 CCGATCTTTATTAGATAGGGAAGAGA 57.417 38.462 6.15 0.00 46.68 3.10
602 604 5.577164 CCGTTGGCCGATCTTTATTAGATAG 59.423 44.000 0.00 0.00 43.75 2.08
603 605 5.475719 CCGTTGGCCGATCTTTATTAGATA 58.524 41.667 0.00 0.00 43.75 1.98
604 606 4.315803 CCGTTGGCCGATCTTTATTAGAT 58.684 43.478 0.00 0.00 46.41 1.98
605 607 3.724374 CCGTTGGCCGATCTTTATTAGA 58.276 45.455 0.00 0.00 39.56 2.10
606 608 2.223377 GCCGTTGGCCGATCTTTATTAG 59.777 50.000 0.00 0.00 44.06 1.73
607 609 2.215196 GCCGTTGGCCGATCTTTATTA 58.785 47.619 0.00 0.00 44.06 0.98
608 610 1.021968 GCCGTTGGCCGATCTTTATT 58.978 50.000 0.00 0.00 44.06 1.40
609 611 2.702847 GCCGTTGGCCGATCTTTAT 58.297 52.632 0.00 0.00 44.06 1.40
610 612 4.211986 GCCGTTGGCCGATCTTTA 57.788 55.556 0.00 0.00 44.06 1.85
620 622 1.815421 CATCTCGAAGGGCCGTTGG 60.815 63.158 16.93 14.98 0.00 3.77
621 623 0.174845 TACATCTCGAAGGGCCGTTG 59.825 55.000 16.93 8.25 0.00 4.10
622 624 0.899720 TTACATCTCGAAGGGCCGTT 59.100 50.000 11.21 11.21 0.00 4.44
623 625 0.460311 CTTACATCTCGAAGGGCCGT 59.540 55.000 0.00 0.00 0.00 5.68
624 626 0.876342 GCTTACATCTCGAAGGGCCG 60.876 60.000 0.00 0.00 0.00 6.13
625 627 0.876342 CGCTTACATCTCGAAGGGCC 60.876 60.000 0.00 0.00 0.00 5.80
626 628 0.876342 CCGCTTACATCTCGAAGGGC 60.876 60.000 0.00 0.00 35.03 5.19
627 629 0.460311 ACCGCTTACATCTCGAAGGG 59.540 55.000 0.00 0.00 35.86 3.95
628 630 1.560923 CACCGCTTACATCTCGAAGG 58.439 55.000 0.00 0.00 0.00 3.46
629 631 1.560923 CCACCGCTTACATCTCGAAG 58.439 55.000 0.00 0.00 0.00 3.79
630 632 0.459585 GCCACCGCTTACATCTCGAA 60.460 55.000 0.00 0.00 0.00 3.71
631 633 1.141019 GCCACCGCTTACATCTCGA 59.859 57.895 0.00 0.00 0.00 4.04
632 634 2.230940 CGCCACCGCTTACATCTCG 61.231 63.158 0.00 0.00 0.00 4.04
633 635 1.883084 CCGCCACCGCTTACATCTC 60.883 63.158 0.00 0.00 0.00 2.75
634 636 2.186903 CCGCCACCGCTTACATCT 59.813 61.111 0.00 0.00 0.00 2.90
635 637 2.895372 CCCGCCACCGCTTACATC 60.895 66.667 0.00 0.00 0.00 3.06
698 700 0.387565 GAGACATCTCGAGGGCTTCC 59.612 60.000 13.56 0.00 25.94 3.46
745 748 2.650116 ATGGAAGCACCGACGAGCT 61.650 57.895 8.65 8.65 44.31 4.09
761 764 1.224075 CGCATCCTTCCACTAGCATG 58.776 55.000 0.00 0.00 0.00 4.06
794 807 3.802418 AATCGCCACGATACGGCCC 62.802 63.158 2.52 0.00 46.30 5.80
800 813 1.525077 GCCCCAAATCGCCACGATA 60.525 57.895 2.52 0.00 46.30 2.92
805 818 4.794648 CCTCGCCCCAAATCGCCA 62.795 66.667 0.00 0.00 0.00 5.69
806 819 4.483243 TCCTCGCCCCAAATCGCC 62.483 66.667 0.00 0.00 0.00 5.54
823 836 1.305297 TGCTCTCCACCTCATCCGT 60.305 57.895 0.00 0.00 0.00 4.69
829 842 0.108233 CTTGCTCTGCTCTCCACCTC 60.108 60.000 0.00 0.00 0.00 3.85
832 845 1.744741 GCCTTGCTCTGCTCTCCAC 60.745 63.158 0.00 0.00 0.00 4.02
835 848 1.079543 TTCGCCTTGCTCTGCTCTC 60.080 57.895 0.00 0.00 0.00 3.20
838 851 2.745492 GCTTCGCCTTGCTCTGCT 60.745 61.111 0.00 0.00 0.00 4.24
839 852 4.157958 CGCTTCGCCTTGCTCTGC 62.158 66.667 0.00 0.00 0.00 4.26
840 853 1.364626 ATTCGCTTCGCCTTGCTCTG 61.365 55.000 0.00 0.00 0.00 3.35
841 854 1.078848 ATTCGCTTCGCCTTGCTCT 60.079 52.632 0.00 0.00 0.00 4.09
842 855 1.061570 CATTCGCTTCGCCTTGCTC 59.938 57.895 0.00 0.00 0.00 4.26
843 856 2.401766 CCATTCGCTTCGCCTTGCT 61.402 57.895 0.00 0.00 0.00 3.91
844 857 2.100991 CCATTCGCTTCGCCTTGC 59.899 61.111 0.00 0.00 0.00 4.01
845 858 1.717937 CTCCATTCGCTTCGCCTTG 59.282 57.895 0.00 0.00 0.00 3.61
846 859 2.109126 GCTCCATTCGCTTCGCCTT 61.109 57.895 0.00 0.00 0.00 4.35
847 860 2.512515 GCTCCATTCGCTTCGCCT 60.513 61.111 0.00 0.00 0.00 5.52
848 861 2.512515 AGCTCCATTCGCTTCGCC 60.513 61.111 0.00 0.00 32.98 5.54
849 862 2.103042 ACAGCTCCATTCGCTTCGC 61.103 57.895 0.00 0.00 35.07 4.70
850 863 1.699656 CCACAGCTCCATTCGCTTCG 61.700 60.000 0.00 0.00 35.07 3.79
851 864 0.391661 TCCACAGCTCCATTCGCTTC 60.392 55.000 0.00 0.00 35.07 3.86
852 865 0.036732 TTCCACAGCTCCATTCGCTT 59.963 50.000 0.00 0.00 35.07 4.68
864 877 1.455786 CGTGCTCGTAGTTTTCCACAG 59.544 52.381 0.00 0.00 0.00 3.66
890 903 4.200092 GTTGGATTATCTCTTCGCCCTTT 58.800 43.478 0.00 0.00 0.00 3.11
904 917 4.495690 TGGAACATGGATCGTTGGATTA 57.504 40.909 0.00 0.00 31.51 1.75
943 969 0.315886 GGTCGACCGGCCAAAATTTT 59.684 50.000 20.85 0.00 40.19 1.82
966 992 1.753930 TTATGGGTGACTAGCGTCGA 58.246 50.000 0.00 0.00 43.21 4.20
967 993 2.190981 GTTTATGGGTGACTAGCGTCG 58.809 52.381 0.00 0.00 43.21 5.12
968 994 3.241067 TGTTTATGGGTGACTAGCGTC 57.759 47.619 0.00 0.00 40.64 5.19
998 2489 1.207811 CCCTTTGGGTGATTGGCATTC 59.792 52.381 2.48 2.48 38.25 2.67
1003 2494 0.972471 GAGGCCCTTTGGGTGATTGG 60.972 60.000 0.00 0.00 46.51 3.16
1016 2507 2.514824 GAAGCATCGGTGAGGCCC 60.515 66.667 0.00 0.00 40.43 5.80
1017 2508 2.514824 GGAAGCATCGGTGAGGCC 60.515 66.667 0.00 0.00 40.43 5.19
1019 2510 1.084370 GTTCGGAAGCATCGGTGAGG 61.084 60.000 0.00 0.00 0.00 3.86
1356 2950 1.645704 CGCGGAAGAAGACGAGGAGA 61.646 60.000 0.00 0.00 0.00 3.71
1766 3360 0.878523 CAGTTTCTTGGCGTCGTCCA 60.879 55.000 4.55 4.55 0.00 4.02
1883 3477 3.991924 ATGTCGGAGAGCAGCCCCT 62.992 63.158 0.00 0.00 36.95 4.79
2233 3827 2.023695 ACCCTTCTGCATCCATCCAAAT 60.024 45.455 0.00 0.00 0.00 2.32
2235 3829 1.002069 ACCCTTCTGCATCCATCCAA 58.998 50.000 0.00 0.00 0.00 3.53
2287 3881 1.968540 GCTTCACCTCACCTGCACC 60.969 63.158 0.00 0.00 0.00 5.01
2455 4071 7.123247 GCATCTTTTATCTGCCATTATACCCAT 59.877 37.037 0.00 0.00 0.00 4.00
2589 4235 2.691252 ATTCCTCCCCCGGTGACC 60.691 66.667 0.00 0.00 0.00 4.02
2633 4281 7.497909 TCTTACATAAACCGGATCATTCTTTCC 59.502 37.037 9.46 0.00 0.00 3.13
2701 4352 7.603404 TCCATTGATTGCAAAATTAGTGGAAAG 59.397 33.333 1.71 0.00 34.47 2.62
2724 4375 7.815840 TTCAAAACAGACTGATGTATTTCCA 57.184 32.000 10.08 0.00 31.70 3.53
2725 4376 8.514594 TGATTCAAAACAGACTGATGTATTTCC 58.485 33.333 10.08 0.00 31.70 3.13
2751 4402 9.480053 CTCATGTAAACTGAATCAATGGTTTTT 57.520 29.630 4.77 0.00 34.40 1.94
2789 4441 7.442062 CCTCAGCATTGTTAAGGTTTTTGATTT 59.558 33.333 0.00 0.00 0.00 2.17
2890 4542 8.515414 CCACATTCTCTACGATCATATCACTTA 58.485 37.037 0.00 0.00 0.00 2.24
2948 4600 5.938125 TCACTTACATTTCTCTTTGGGCTAC 59.062 40.000 0.00 0.00 0.00 3.58
2963 4615 2.158682 TGTGTGTGCCCTTCACTTACAT 60.159 45.455 0.00 0.00 45.81 2.29
2969 4621 0.381801 CTGTTGTGTGTGCCCTTCAC 59.618 55.000 0.00 0.00 45.82 3.18
3050 4702 0.107654 CATCCCCGGTGAACTTCTCC 60.108 60.000 0.00 0.38 0.00 3.71
3088 4740 1.299976 CTAAGCCCCTCGCCTTGTT 59.700 57.895 0.00 0.00 38.78 2.83
3168 4820 0.034756 TTACGACACCATGCAGCTGT 59.965 50.000 16.64 0.00 0.00 4.40
3206 4858 3.904136 GCATATTTTGCGCTGGTAGAT 57.096 42.857 9.73 0.00 42.54 1.98
3251 4903 1.956477 CCCTTCTGTTGAACTGGTTGG 59.044 52.381 2.37 3.09 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.