Multiple sequence alignment - TraesCS1A01G363000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G363000 chr1A 100.000 2312 0 0 1 2312 543927365 543929676 0.000000e+00 4270.0
1 TraesCS1A01G363000 chr1A 97.238 543 15 0 771 1313 541343593 541344135 0.000000e+00 920.0
2 TraesCS1A01G363000 chr1A 97.053 543 15 1 771 1313 541461014 541460473 0.000000e+00 913.0
3 TraesCS1A01G363000 chr1B 87.964 1562 106 39 647 2181 613231456 613232962 0.000000e+00 1768.0
4 TraesCS1A01G363000 chr1B 95.612 547 23 1 771 1316 610893033 610893579 0.000000e+00 876.0
5 TraesCS1A01G363000 chr1B 94.555 551 25 2 771 1316 608042989 608042439 0.000000e+00 846.0
6 TraesCS1A01G363000 chr1B 94.679 545 25 1 773 1313 608335858 608335314 0.000000e+00 843.0
7 TraesCS1A01G363000 chr1B 90.172 407 36 4 3 407 613188666 613189070 5.660000e-146 527.0
8 TraesCS1A01G363000 chr1B 86.939 245 26 4 416 655 678674147 678673904 1.050000e-68 270.0
9 TraesCS1A01G363000 chr1B 91.964 112 9 0 2201 2312 613232955 613233066 8.550000e-35 158.0
10 TraesCS1A01G363000 chr1D 89.262 1043 58 21 653 1675 447756653 447757661 0.000000e+00 1256.0
11 TraesCS1A01G363000 chr1D 95.430 547 24 1 771 1316 445367044 445366498 0.000000e+00 870.0
12 TraesCS1A01G363000 chr1D 95.212 543 26 0 771 1313 355827857 355828399 0.000000e+00 859.0
13 TraesCS1A01G363000 chr1D 85.173 607 47 17 1726 2312 447757589 447758172 1.190000e-162 582.0
14 TraesCS1A01G363000 chr1D 92.040 201 15 1 3 202 447753263 447753463 4.860000e-72 281.0
15 TraesCS1A01G363000 chr1D 90.640 203 15 3 183 382 447756377 447756578 1.360000e-67 267.0
16 TraesCS1A01G363000 chr6B 88.797 241 27 0 416 656 98854532 98854292 1.740000e-76 296.0
17 TraesCS1A01G363000 chr2D 88.430 242 27 1 416 657 305074617 305074857 8.080000e-75 291.0
18 TraesCS1A01G363000 chr7A 88.333 240 28 0 416 655 17694178 17693939 2.910000e-74 289.0
19 TraesCS1A01G363000 chr7A 87.295 244 30 1 416 659 652696308 652696550 6.290000e-71 278.0
20 TraesCS1A01G363000 chr7A 86.000 250 33 2 408 655 214323434 214323683 1.360000e-67 267.0
21 TraesCS1A01G363000 chr2A 87.967 241 28 1 416 656 28673963 28673724 1.350000e-72 283.0
22 TraesCS1A01G363000 chr4D 86.831 243 28 3 416 656 464749978 464750218 3.790000e-68 268.0
23 TraesCS1A01G363000 chr5D 86.000 250 34 1 416 664 411629157 411629406 1.360000e-67 267.0
24 TraesCS1A01G363000 chr5B 97.500 40 1 0 1765 1804 22519037 22519076 4.120000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G363000 chr1A 543927365 543929676 2311 False 4270.0 4270 100.00000 1 2312 1 chr1A.!!$F2 2311
1 TraesCS1A01G363000 chr1A 541343593 541344135 542 False 920.0 920 97.23800 771 1313 1 chr1A.!!$F1 542
2 TraesCS1A01G363000 chr1A 541460473 541461014 541 True 913.0 913 97.05300 771 1313 1 chr1A.!!$R1 542
3 TraesCS1A01G363000 chr1B 613231456 613233066 1610 False 963.0 1768 89.96400 647 2312 2 chr1B.!!$F3 1665
4 TraesCS1A01G363000 chr1B 610893033 610893579 546 False 876.0 876 95.61200 771 1316 1 chr1B.!!$F1 545
5 TraesCS1A01G363000 chr1B 608042439 608042989 550 True 846.0 846 94.55500 771 1316 1 chr1B.!!$R1 545
6 TraesCS1A01G363000 chr1B 608335314 608335858 544 True 843.0 843 94.67900 773 1313 1 chr1B.!!$R2 540
7 TraesCS1A01G363000 chr1D 445366498 445367044 546 True 870.0 870 95.43000 771 1316 1 chr1D.!!$R1 545
8 TraesCS1A01G363000 chr1D 355827857 355828399 542 False 859.0 859 95.21200 771 1313 1 chr1D.!!$F1 542
9 TraesCS1A01G363000 chr1D 447753263 447758172 4909 False 596.5 1256 89.27875 3 2312 4 chr1D.!!$F2 2309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 3530 0.038892 TTTGTACTCCCGTCGCAGTC 60.039 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 4505 0.040958 CAACTGAAGAACGCACTGGC 60.041 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 2.512896 GCCGATGGATTGCTCCCT 59.487 61.111 0.00 0.00 41.29 4.20
65 67 1.450531 GCCGATGGATTGCTCCCTTG 61.451 60.000 0.00 0.00 41.29 3.61
105 107 2.432146 TGGGCAACTAAACAACATGCAA 59.568 40.909 0.00 0.00 38.73 4.08
147 149 0.902984 TCCTCGGCCAAGCTCAACTA 60.903 55.000 2.24 0.00 0.00 2.24
159 161 5.009010 CCAAGCTCAACTAAAACACAGATGT 59.991 40.000 0.00 0.00 42.46 3.06
202 204 1.068264 GCAAGCAAACACTCCCTAAGC 60.068 52.381 0.00 0.00 0.00 3.09
203 205 2.229792 CAAGCAAACACTCCCTAAGCA 58.770 47.619 0.00 0.00 0.00 3.91
204 206 2.622942 CAAGCAAACACTCCCTAAGCAA 59.377 45.455 0.00 0.00 0.00 3.91
205 207 3.160679 AGCAAACACTCCCTAAGCAAT 57.839 42.857 0.00 0.00 0.00 3.56
218 3154 1.302907 AAGCAATGGGGGATGAGAGT 58.697 50.000 0.00 0.00 0.00 3.24
221 3159 1.144503 GCAATGGGGGATGAGAGTGAT 59.855 52.381 0.00 0.00 0.00 3.06
231 3169 0.764271 TGAGAGTGATTGCACCCACA 59.236 50.000 16.96 0.00 46.32 4.17
232 3170 1.352017 TGAGAGTGATTGCACCCACAT 59.648 47.619 16.96 7.48 46.32 3.21
233 3171 2.571202 TGAGAGTGATTGCACCCACATA 59.429 45.455 16.96 1.54 46.32 2.29
259 3197 4.083484 GGACCAAACCATAGACAAAAGTCG 60.083 45.833 0.00 0.00 0.00 4.18
266 3204 3.424433 CCATAGACAAAAGTCGTTTCGCC 60.424 47.826 0.00 0.00 0.00 5.54
280 3218 3.491964 CGTTTCGCCCCTGAGACATATTA 60.492 47.826 0.00 0.00 0.00 0.98
315 3253 1.774254 TGCTTTCCAACTGGAGAGGAA 59.226 47.619 15.92 0.00 42.31 3.36
340 3278 3.731431 TCTAACCAAATAGGAGAGGCCA 58.269 45.455 5.01 0.00 41.22 5.36
341 3279 4.108570 TCTAACCAAATAGGAGAGGCCAA 58.891 43.478 5.01 0.00 41.22 4.52
342 3280 3.825908 AACCAAATAGGAGAGGCCAAA 57.174 42.857 5.01 0.00 41.22 3.28
382 3320 5.694910 CGACAACTAGCTACTTTGAAGGAAA 59.305 40.000 14.60 0.00 0.00 3.13
384 3322 7.440523 ACAACTAGCTACTTTGAAGGAAATG 57.559 36.000 14.60 0.00 0.00 2.32
385 3323 6.072452 ACAACTAGCTACTTTGAAGGAAATGC 60.072 38.462 14.60 0.00 0.00 3.56
386 3324 5.560724 ACTAGCTACTTTGAAGGAAATGCA 58.439 37.500 0.00 0.00 0.00 3.96
391 3329 7.219322 AGCTACTTTGAAGGAAATGCATTTTT 58.781 30.769 24.81 16.32 0.00 1.94
392 3330 7.172019 AGCTACTTTGAAGGAAATGCATTTTTG 59.828 33.333 24.81 8.57 0.00 2.44
393 3331 7.171337 GCTACTTTGAAGGAAATGCATTTTTGA 59.829 33.333 24.81 8.71 0.00 2.69
394 3332 7.250445 ACTTTGAAGGAAATGCATTTTTGAC 57.750 32.000 24.81 16.55 0.00 3.18
395 3333 7.049754 ACTTTGAAGGAAATGCATTTTTGACT 58.950 30.769 24.81 17.02 0.00 3.41
396 3334 7.225341 ACTTTGAAGGAAATGCATTTTTGACTC 59.775 33.333 24.81 16.47 0.00 3.36
397 3335 6.159299 TGAAGGAAATGCATTTTTGACTCA 57.841 33.333 24.81 18.43 0.00 3.41
398 3336 5.984926 TGAAGGAAATGCATTTTTGACTCAC 59.015 36.000 24.81 16.39 0.00 3.51
399 3337 4.886579 AGGAAATGCATTTTTGACTCACC 58.113 39.130 24.81 17.74 0.00 4.02
400 3338 3.996363 GGAAATGCATTTTTGACTCACCC 59.004 43.478 24.81 14.22 0.00 4.61
401 3339 3.683365 AATGCATTTTTGACTCACCCC 57.317 42.857 5.99 0.00 0.00 4.95
413 3367 0.179000 CTCACCCCGCTATCTGCTTT 59.821 55.000 0.00 0.00 40.11 3.51
414 3368 0.178068 TCACCCCGCTATCTGCTTTC 59.822 55.000 0.00 0.00 40.11 2.62
415 3369 0.107703 CACCCCGCTATCTGCTTTCA 60.108 55.000 0.00 0.00 40.11 2.69
417 3371 0.179000 CCCCGCTATCTGCTTTCACT 59.821 55.000 0.00 0.00 40.11 3.41
419 3373 1.576356 CCGCTATCTGCTTTCACTCC 58.424 55.000 0.00 0.00 40.11 3.85
420 3374 1.576356 CGCTATCTGCTTTCACTCCC 58.424 55.000 0.00 0.00 40.11 4.30
421 3375 1.137872 CGCTATCTGCTTTCACTCCCT 59.862 52.381 0.00 0.00 40.11 4.20
422 3376 2.801342 CGCTATCTGCTTTCACTCCCTC 60.801 54.545 0.00 0.00 40.11 4.30
423 3377 2.484594 GCTATCTGCTTTCACTCCCTCC 60.485 54.545 0.00 0.00 38.95 4.30
424 3378 1.661463 ATCTGCTTTCACTCCCTCCA 58.339 50.000 0.00 0.00 0.00 3.86
426 3380 1.988107 TCTGCTTTCACTCCCTCCATT 59.012 47.619 0.00 0.00 0.00 3.16
427 3381 2.026822 TCTGCTTTCACTCCCTCCATTC 60.027 50.000 0.00 0.00 0.00 2.67
428 3382 1.004745 TGCTTTCACTCCCTCCATTCC 59.995 52.381 0.00 0.00 0.00 3.01
430 3384 2.555227 GCTTTCACTCCCTCCATTCCAA 60.555 50.000 0.00 0.00 0.00 3.53
431 3385 3.766545 CTTTCACTCCCTCCATTCCAAA 58.233 45.455 0.00 0.00 0.00 3.28
432 3386 3.893753 TTCACTCCCTCCATTCCAAAA 57.106 42.857 0.00 0.00 0.00 2.44
433 3387 4.402616 TTCACTCCCTCCATTCCAAAAT 57.597 40.909 0.00 0.00 0.00 1.82
435 3389 5.732331 TCACTCCCTCCATTCCAAAATAT 57.268 39.130 0.00 0.00 0.00 1.28
436 3390 6.840090 TCACTCCCTCCATTCCAAAATATA 57.160 37.500 0.00 0.00 0.00 0.86
437 3391 6.841601 TCACTCCCTCCATTCCAAAATATAG 58.158 40.000 0.00 0.00 0.00 1.31
438 3392 6.389869 TCACTCCCTCCATTCCAAAATATAGT 59.610 38.462 0.00 0.00 0.00 2.12
439 3393 6.488006 CACTCCCTCCATTCCAAAATATAGTG 59.512 42.308 0.00 0.00 0.00 2.74
440 3394 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
441 3395 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
442 3396 4.821805 CCTCCATTCCAAAATATAGTGCGT 59.178 41.667 0.00 0.00 0.00 5.24
443 3397 5.049405 CCTCCATTCCAAAATATAGTGCGTC 60.049 44.000 0.00 0.00 0.00 5.19
444 3398 4.819630 TCCATTCCAAAATATAGTGCGTCC 59.180 41.667 0.00 0.00 0.00 4.79
445 3399 4.319477 CCATTCCAAAATATAGTGCGTCCG 60.319 45.833 0.00 0.00 0.00 4.79
446 3400 3.530265 TCCAAAATATAGTGCGTCCGT 57.470 42.857 0.00 0.00 0.00 4.69
447 3401 4.652421 TCCAAAATATAGTGCGTCCGTA 57.348 40.909 0.00 0.00 0.00 4.02
448 3402 5.204409 TCCAAAATATAGTGCGTCCGTAT 57.796 39.130 0.00 0.00 0.00 3.06
449 3403 5.603596 TCCAAAATATAGTGCGTCCGTATT 58.396 37.500 0.00 0.00 0.00 1.89
450 3404 6.050432 TCCAAAATATAGTGCGTCCGTATTT 58.950 36.000 0.00 0.00 0.00 1.40
451 3405 6.539464 TCCAAAATATAGTGCGTCCGTATTTT 59.461 34.615 0.00 0.00 36.13 1.82
452 3406 7.066043 TCCAAAATATAGTGCGTCCGTATTTTT 59.934 33.333 0.00 0.00 34.50 1.94
453 3407 7.375017 CCAAAATATAGTGCGTCCGTATTTTTC 59.625 37.037 0.00 0.00 34.50 2.29
454 3408 5.817616 ATATAGTGCGTCCGTATTTTTCG 57.182 39.130 0.00 0.00 0.00 3.46
455 3409 2.068837 AGTGCGTCCGTATTTTTCGA 57.931 45.000 0.00 0.00 0.00 3.71
456 3410 1.990563 AGTGCGTCCGTATTTTTCGAG 59.009 47.619 0.00 0.00 0.00 4.04
457 3411 1.060122 GTGCGTCCGTATTTTTCGAGG 59.940 52.381 0.00 0.00 0.00 4.63
458 3412 1.337074 TGCGTCCGTATTTTTCGAGGT 60.337 47.619 0.00 0.00 0.00 3.85
459 3413 1.322637 GCGTCCGTATTTTTCGAGGTC 59.677 52.381 0.00 0.00 0.00 3.85
460 3414 1.922545 CGTCCGTATTTTTCGAGGTCC 59.077 52.381 0.00 0.00 0.00 4.46
461 3415 2.671914 CGTCCGTATTTTTCGAGGTCCA 60.672 50.000 0.00 0.00 0.00 4.02
462 3416 3.328505 GTCCGTATTTTTCGAGGTCCAA 58.671 45.455 0.00 0.00 0.00 3.53
463 3417 3.124128 GTCCGTATTTTTCGAGGTCCAAC 59.876 47.826 0.00 0.00 0.00 3.77
464 3418 3.007182 TCCGTATTTTTCGAGGTCCAACT 59.993 43.478 0.00 0.00 0.00 3.16
465 3419 3.749609 CCGTATTTTTCGAGGTCCAACTT 59.250 43.478 0.00 0.00 0.00 2.66
466 3420 4.214758 CCGTATTTTTCGAGGTCCAACTTT 59.785 41.667 0.00 0.00 0.00 2.66
467 3421 5.409214 CCGTATTTTTCGAGGTCCAACTTTA 59.591 40.000 0.00 0.00 0.00 1.85
468 3422 6.073112 CCGTATTTTTCGAGGTCCAACTTTAA 60.073 38.462 0.00 0.00 0.00 1.52
469 3423 6.793680 CGTATTTTTCGAGGTCCAACTTTAAC 59.206 38.462 0.00 0.00 0.00 2.01
470 3424 5.503662 TTTTTCGAGGTCCAACTTTAACC 57.496 39.130 0.00 0.00 0.00 2.85
471 3425 3.842007 TTCGAGGTCCAACTTTAACCA 57.158 42.857 0.00 0.00 35.43 3.67
472 3426 4.360951 TTCGAGGTCCAACTTTAACCAT 57.639 40.909 0.00 0.00 35.43 3.55
473 3427 5.486735 TTCGAGGTCCAACTTTAACCATA 57.513 39.130 0.00 0.00 35.43 2.74
474 3428 5.486735 TCGAGGTCCAACTTTAACCATAA 57.513 39.130 0.00 0.00 35.43 1.90
475 3429 5.867330 TCGAGGTCCAACTTTAACCATAAA 58.133 37.500 0.00 0.00 35.43 1.40
476 3430 6.478129 TCGAGGTCCAACTTTAACCATAAAT 58.522 36.000 0.00 0.00 35.43 1.40
477 3431 6.943718 TCGAGGTCCAACTTTAACCATAAATT 59.056 34.615 0.00 0.00 35.43 1.82
478 3432 7.449086 TCGAGGTCCAACTTTAACCATAAATTT 59.551 33.333 0.00 0.00 35.43 1.82
479 3433 8.732531 CGAGGTCCAACTTTAACCATAAATTTA 58.267 33.333 0.00 0.00 35.43 1.40
482 3436 9.426837 GGTCCAACTTTAACCATAAATTTAACC 57.573 33.333 1.21 0.00 30.46 2.85
483 3437 9.984190 GTCCAACTTTAACCATAAATTTAACCA 57.016 29.630 1.21 0.00 30.88 3.67
492 3446 7.095695 ACCATAAATTTAACCAATGAGACCG 57.904 36.000 1.21 0.00 0.00 4.79
493 3447 6.887545 ACCATAAATTTAACCAATGAGACCGA 59.112 34.615 1.21 0.00 0.00 4.69
494 3448 7.148137 ACCATAAATTTAACCAATGAGACCGAC 60.148 37.037 1.21 0.00 0.00 4.79
495 3449 7.067008 CCATAAATTTAACCAATGAGACCGACT 59.933 37.037 1.21 0.00 0.00 4.18
496 3450 5.880054 AATTTAACCAATGAGACCGACTG 57.120 39.130 0.00 0.00 0.00 3.51
497 3451 2.380084 TAACCAATGAGACCGACTGC 57.620 50.000 0.00 0.00 0.00 4.40
498 3452 0.670546 AACCAATGAGACCGACTGCG 60.671 55.000 0.00 0.00 37.24 5.18
508 3462 4.124351 CGACTGCGGCGGGAGTAA 62.124 66.667 18.21 0.00 45.69 2.24
509 3463 2.263540 GACTGCGGCGGGAGTAAA 59.736 61.111 18.21 0.00 45.69 2.01
510 3464 1.375013 GACTGCGGCGGGAGTAAAA 60.375 57.895 18.21 0.00 45.69 1.52
511 3465 0.952010 GACTGCGGCGGGAGTAAAAA 60.952 55.000 18.21 0.00 45.69 1.94
512 3466 0.322187 ACTGCGGCGGGAGTAAAAAT 60.322 50.000 16.80 0.00 43.69 1.82
513 3467 0.808755 CTGCGGCGGGAGTAAAAATT 59.191 50.000 9.78 0.00 0.00 1.82
514 3468 2.011222 CTGCGGCGGGAGTAAAAATTA 58.989 47.619 9.78 0.00 0.00 1.40
515 3469 2.616842 CTGCGGCGGGAGTAAAAATTAT 59.383 45.455 9.78 0.00 0.00 1.28
516 3470 3.018149 TGCGGCGGGAGTAAAAATTATT 58.982 40.909 9.78 0.00 0.00 1.40
517 3471 3.444388 TGCGGCGGGAGTAAAAATTATTT 59.556 39.130 9.78 0.00 0.00 1.40
518 3472 4.639310 TGCGGCGGGAGTAAAAATTATTTA 59.361 37.500 9.78 0.00 0.00 1.40
519 3473 5.125097 TGCGGCGGGAGTAAAAATTATTTAA 59.875 36.000 9.78 0.00 0.00 1.52
520 3474 6.183360 TGCGGCGGGAGTAAAAATTATTTAAT 60.183 34.615 9.78 0.00 0.00 1.40
521 3475 6.698329 GCGGCGGGAGTAAAAATTATTTAATT 59.302 34.615 9.78 0.00 37.49 1.40
522 3476 7.861872 GCGGCGGGAGTAAAAATTATTTAATTA 59.138 33.333 9.78 0.00 35.00 1.40
523 3477 9.733219 CGGCGGGAGTAAAAATTATTTAATTAA 57.267 29.630 0.00 0.00 35.00 1.40
568 3522 8.833231 ATTCACTGATATAATTTGTACTCCCG 57.167 34.615 0.00 0.00 0.00 5.14
569 3523 7.356089 TCACTGATATAATTTGTACTCCCGT 57.644 36.000 0.00 0.00 0.00 5.28
570 3524 7.431249 TCACTGATATAATTTGTACTCCCGTC 58.569 38.462 0.00 0.00 0.00 4.79
571 3525 6.362551 CACTGATATAATTTGTACTCCCGTCG 59.637 42.308 0.00 0.00 0.00 5.12
572 3526 5.224888 TGATATAATTTGTACTCCCGTCGC 58.775 41.667 0.00 0.00 0.00 5.19
573 3527 3.530265 ATAATTTGTACTCCCGTCGCA 57.470 42.857 0.00 0.00 0.00 5.10
574 3528 1.722011 AATTTGTACTCCCGTCGCAG 58.278 50.000 0.00 0.00 0.00 5.18
575 3529 0.606604 ATTTGTACTCCCGTCGCAGT 59.393 50.000 0.00 1.27 0.00 4.40
576 3530 0.038892 TTTGTACTCCCGTCGCAGTC 60.039 55.000 0.00 0.00 0.00 3.51
577 3531 2.099831 GTACTCCCGTCGCAGTCG 59.900 66.667 0.00 0.00 39.05 4.18
584 3538 4.086178 CGTCGCAGTCGGTCTCGT 62.086 66.667 0.00 0.00 35.06 4.18
585 3539 2.254651 GTCGCAGTCGGTCTCGTT 59.745 61.111 0.00 0.00 37.69 3.85
586 3540 2.081212 GTCGCAGTCGGTCTCGTTG 61.081 63.158 0.00 0.00 37.69 4.10
587 3541 2.254350 CGCAGTCGGTCTCGTTGA 59.746 61.111 0.00 0.00 37.69 3.18
588 3542 1.154016 CGCAGTCGGTCTCGTTGAT 60.154 57.895 0.00 0.00 37.69 2.57
589 3543 0.732880 CGCAGTCGGTCTCGTTGATT 60.733 55.000 0.00 0.00 37.69 2.57
590 3544 1.466866 CGCAGTCGGTCTCGTTGATTA 60.467 52.381 0.00 0.00 37.69 1.75
591 3545 2.602878 GCAGTCGGTCTCGTTGATTAA 58.397 47.619 0.00 0.00 37.69 1.40
592 3546 2.991190 GCAGTCGGTCTCGTTGATTAAA 59.009 45.455 0.00 0.00 37.69 1.52
593 3547 3.617263 GCAGTCGGTCTCGTTGATTAAAT 59.383 43.478 0.00 0.00 37.69 1.40
594 3548 4.092968 GCAGTCGGTCTCGTTGATTAAATT 59.907 41.667 0.00 0.00 37.69 1.82
595 3549 5.390567 GCAGTCGGTCTCGTTGATTAAATTT 60.391 40.000 0.00 0.00 37.69 1.82
596 3550 6.183360 GCAGTCGGTCTCGTTGATTAAATTTA 60.183 38.462 0.00 0.00 37.69 1.40
597 3551 7.465513 GCAGTCGGTCTCGTTGATTAAATTTAT 60.466 37.037 0.00 0.00 37.69 1.40
598 3552 7.846107 CAGTCGGTCTCGTTGATTAAATTTATG 59.154 37.037 0.00 0.00 37.69 1.90
599 3553 7.762615 AGTCGGTCTCGTTGATTAAATTTATGA 59.237 33.333 0.00 0.00 37.69 2.15
600 3554 8.548721 GTCGGTCTCGTTGATTAAATTTATGAT 58.451 33.333 0.00 0.00 37.69 2.45
601 3555 8.761497 TCGGTCTCGTTGATTAAATTTATGATC 58.239 33.333 0.00 1.20 37.69 2.92
602 3556 8.547894 CGGTCTCGTTGATTAAATTTATGATCA 58.452 33.333 0.00 0.00 0.00 2.92
615 3569 7.801547 AATTTATGATCAAAGTTGAAGCACG 57.198 32.000 0.00 0.00 41.13 5.34
616 3570 6.552859 TTTATGATCAAAGTTGAAGCACGA 57.447 33.333 0.00 0.00 41.13 4.35
617 3571 4.675190 ATGATCAAAGTTGAAGCACGAG 57.325 40.909 0.00 0.00 41.13 4.18
618 3572 3.727726 TGATCAAAGTTGAAGCACGAGA 58.272 40.909 0.00 0.00 41.13 4.04
619 3573 4.126437 TGATCAAAGTTGAAGCACGAGAA 58.874 39.130 0.00 0.00 41.13 2.87
620 3574 4.756642 TGATCAAAGTTGAAGCACGAGAAT 59.243 37.500 0.00 0.00 41.13 2.40
621 3575 5.931724 TGATCAAAGTTGAAGCACGAGAATA 59.068 36.000 0.00 0.00 41.13 1.75
622 3576 6.595326 TGATCAAAGTTGAAGCACGAGAATAT 59.405 34.615 0.00 0.00 41.13 1.28
623 3577 7.763985 TGATCAAAGTTGAAGCACGAGAATATA 59.236 33.333 0.00 0.00 41.13 0.86
624 3578 7.525688 TCAAAGTTGAAGCACGAGAATATAG 57.474 36.000 0.00 0.00 33.55 1.31
625 3579 7.320399 TCAAAGTTGAAGCACGAGAATATAGA 58.680 34.615 0.00 0.00 33.55 1.98
626 3580 7.817478 TCAAAGTTGAAGCACGAGAATATAGAA 59.183 33.333 0.00 0.00 33.55 2.10
627 3581 8.443160 CAAAGTTGAAGCACGAGAATATAGAAA 58.557 33.333 0.00 0.00 0.00 2.52
628 3582 8.723942 AAGTTGAAGCACGAGAATATAGAAAT 57.276 30.769 0.00 0.00 0.00 2.17
629 3583 8.359060 AGTTGAAGCACGAGAATATAGAAATC 57.641 34.615 0.00 0.00 0.00 2.17
630 3584 6.993175 TGAAGCACGAGAATATAGAAATCG 57.007 37.500 0.00 0.00 39.22 3.34
631 3585 5.402568 TGAAGCACGAGAATATAGAAATCGC 59.597 40.000 0.00 0.00 36.89 4.58
632 3586 5.127693 AGCACGAGAATATAGAAATCGCT 57.872 39.130 0.00 0.00 36.89 4.93
633 3587 6.255596 AGCACGAGAATATAGAAATCGCTA 57.744 37.500 0.00 0.00 36.89 4.26
634 3588 6.857956 AGCACGAGAATATAGAAATCGCTAT 58.142 36.000 0.00 0.00 36.89 2.97
635 3589 7.986562 AGCACGAGAATATAGAAATCGCTATA 58.013 34.615 0.00 0.00 37.64 1.31
636 3590 8.625651 AGCACGAGAATATAGAAATCGCTATAT 58.374 33.333 0.00 0.00 42.81 0.86
647 3601 9.739276 ATAGAAATCGCTATATTTTGGAATGGA 57.261 29.630 0.00 0.00 29.56 3.41
648 3602 8.463930 AGAAATCGCTATATTTTGGAATGGAA 57.536 30.769 0.00 0.00 0.00 3.53
649 3603 9.082313 AGAAATCGCTATATTTTGGAATGGAAT 57.918 29.630 0.00 0.00 0.00 3.01
650 3604 9.132521 GAAATCGCTATATTTTGGAATGGAATG 57.867 33.333 0.00 0.00 0.00 2.67
651 3605 8.408043 AATCGCTATATTTTGGAATGGAATGA 57.592 30.769 0.00 0.00 0.00 2.57
843 3798 2.214216 CCCCCGGATCGCCATCTTA 61.214 63.158 0.73 0.00 0.00 2.10
1332 4294 1.680522 CCGCCACCAGATCAGTAGCT 61.681 60.000 0.00 0.00 0.00 3.32
1333 4295 1.032794 CGCCACCAGATCAGTAGCTA 58.967 55.000 0.00 0.00 0.00 3.32
1336 4298 2.035321 GCCACCAGATCAGTAGCTAGAC 59.965 54.545 0.00 0.00 0.00 2.59
1337 4299 3.561143 CCACCAGATCAGTAGCTAGACT 58.439 50.000 0.00 0.00 0.00 3.24
1356 4320 3.721035 ACTGTCGTTGTTTGGTAGTACC 58.279 45.455 12.80 12.80 39.22 3.34
1376 4340 2.936912 GCAGTGCTCGTGGTCCTCT 61.937 63.158 8.18 0.00 0.00 3.69
1377 4341 1.668294 CAGTGCTCGTGGTCCTCTT 59.332 57.895 0.00 0.00 0.00 2.85
1385 4353 3.254060 CTCGTGGTCCTCTTGTGTAATG 58.746 50.000 0.00 0.00 0.00 1.90
1428 4405 4.164981 ACCCTTGTTGTCTGGATGTACTA 58.835 43.478 0.00 0.00 0.00 1.82
1449 4431 7.213178 ACTACTAGGATGGAATGGAAATTGT 57.787 36.000 0.00 0.00 0.00 2.71
1458 4440 5.782047 TGGAATGGAAATTGTAGCAGTTTG 58.218 37.500 0.00 0.00 0.00 2.93
1482 4464 5.589050 GCCCTTGAATTCGTTACCTATTCTT 59.411 40.000 0.04 0.00 31.25 2.52
1484 4466 7.678927 GCCCTTGAATTCGTTACCTATTCTTTC 60.679 40.741 0.04 0.00 31.25 2.62
1487 4469 5.292589 TGAATTCGTTACCTATTCTTTCGGC 59.707 40.000 0.04 0.00 31.25 5.54
1522 4505 1.821241 CGTGCGCGGGTCAGATATTG 61.821 60.000 12.87 0.00 0.00 1.90
1560 4543 5.848036 CAGTTGTCTTGCTCTGTAAATTTCG 59.152 40.000 0.00 0.00 0.00 3.46
1572 4555 0.908910 AAATTTCGGCCCCCAAATCC 59.091 50.000 0.00 0.00 0.00 3.01
1574 4557 2.508407 ATTTCGGCCCCCAAATCCGT 62.508 55.000 0.00 0.00 43.35 4.69
1580 4563 1.291906 CCCCCAAATCCGTTTGTGC 59.708 57.895 0.88 0.00 42.50 4.57
1610 4593 4.217550 CGGTGTTTGGATCCTATTTTGTGT 59.782 41.667 14.23 0.00 0.00 3.72
1611 4594 5.278758 CGGTGTTTGGATCCTATTTTGTGTT 60.279 40.000 14.23 0.00 0.00 3.32
1612 4595 5.925969 GGTGTTTGGATCCTATTTTGTGTTG 59.074 40.000 14.23 0.00 0.00 3.33
1613 4596 5.405269 GTGTTTGGATCCTATTTTGTGTTGC 59.595 40.000 14.23 0.00 0.00 4.17
1614 4597 4.799564 TTGGATCCTATTTTGTGTTGCC 57.200 40.909 14.23 0.00 0.00 4.52
1615 4598 4.046286 TGGATCCTATTTTGTGTTGCCT 57.954 40.909 14.23 0.00 0.00 4.75
1616 4599 4.016444 TGGATCCTATTTTGTGTTGCCTC 58.984 43.478 14.23 0.00 0.00 4.70
1617 4600 3.381590 GGATCCTATTTTGTGTTGCCTCC 59.618 47.826 3.84 0.00 0.00 4.30
1618 4601 3.517296 TCCTATTTTGTGTTGCCTCCA 57.483 42.857 0.00 0.00 0.00 3.86
1619 4602 3.420893 TCCTATTTTGTGTTGCCTCCAG 58.579 45.455 0.00 0.00 0.00 3.86
1620 4603 3.157087 CCTATTTTGTGTTGCCTCCAGT 58.843 45.455 0.00 0.00 0.00 4.00
1621 4604 3.057315 CCTATTTTGTGTTGCCTCCAGTG 60.057 47.826 0.00 0.00 0.00 3.66
1622 4605 1.846007 TTTTGTGTTGCCTCCAGTGT 58.154 45.000 0.00 0.00 0.00 3.55
1623 4606 1.102154 TTTGTGTTGCCTCCAGTGTG 58.898 50.000 0.00 0.00 0.00 3.82
1624 4607 0.034574 TTGTGTTGCCTCCAGTGTGT 60.035 50.000 0.00 0.00 0.00 3.72
1625 4608 0.747644 TGTGTTGCCTCCAGTGTGTG 60.748 55.000 0.00 0.00 0.00 3.82
1652 4635 3.025322 TCAAACCAAATCCCACTGTGT 57.975 42.857 7.08 0.00 0.00 3.72
1694 4677 9.971922 GGTGGATAGAAATCAAATCCTATTTTG 57.028 33.333 13.01 0.00 39.97 2.44
1759 4744 2.665165 TGCTTCAGTGTTTGGTGGATT 58.335 42.857 0.00 0.00 0.00 3.01
1796 4781 1.476085 TGTGTTGGCTTCAGTGTTTGG 59.524 47.619 0.00 0.00 0.00 3.28
1799 4784 1.476488 GTTGGCTTCAGTGTTTGGTGT 59.524 47.619 0.00 0.00 0.00 4.16
1811 4796 3.189287 GTGTTTGGTGTATTCAGGCTGAG 59.811 47.826 17.91 0.00 0.00 3.35
1834 4819 2.099431 CGCTCTTCTGCTGCTCCAC 61.099 63.158 0.00 0.00 0.00 4.02
1865 4851 6.320164 TGTTAAACTTGTAGTGCTGGAATGTT 59.680 34.615 0.00 0.00 0.00 2.71
1869 4855 5.591099 ACTTGTAGTGCTGGAATGTTTTTG 58.409 37.500 0.00 0.00 0.00 2.44
1895 4881 2.276201 TCTGTGACGTCAAACTTGTGG 58.724 47.619 21.95 1.54 0.00 4.17
1914 4900 0.250901 GAATGTGTGCCTCTGTGGGT 60.251 55.000 0.00 0.00 36.00 4.51
1915 4901 0.250901 AATGTGTGCCTCTGTGGGTC 60.251 55.000 0.00 0.00 36.00 4.46
1916 4902 1.130054 ATGTGTGCCTCTGTGGGTCT 61.130 55.000 0.00 0.00 36.00 3.85
1917 4903 1.302033 GTGTGCCTCTGTGGGTCTG 60.302 63.158 0.00 0.00 36.00 3.51
1918 4904 2.348998 GTGCCTCTGTGGGTCTGG 59.651 66.667 0.00 0.00 36.00 3.86
1919 4905 2.122413 TGCCTCTGTGGGTCTGGT 60.122 61.111 0.00 0.00 36.00 4.00
1920 4906 2.217038 TGCCTCTGTGGGTCTGGTC 61.217 63.158 0.00 0.00 36.00 4.02
1949 4935 3.932289 GCTGTTTGCTGCTTGCTG 58.068 55.556 0.00 0.00 43.37 4.41
1950 4936 2.308039 GCTGTTTGCTGCTTGCTGC 61.308 57.895 15.80 15.80 43.37 5.25
1951 4937 1.362717 CTGTTTGCTGCTTGCTGCT 59.637 52.632 21.38 0.00 43.37 4.24
1952 4938 0.249322 CTGTTTGCTGCTTGCTGCTT 60.249 50.000 21.38 0.00 43.37 3.91
1953 4939 0.176219 TGTTTGCTGCTTGCTGCTTT 59.824 45.000 21.38 0.00 43.37 3.51
1954 4940 1.408340 TGTTTGCTGCTTGCTGCTTTA 59.592 42.857 21.38 7.82 43.37 1.85
1983 4969 2.620115 AGTGCATTTGGAGAACTGTGTG 59.380 45.455 0.00 0.00 0.00 3.82
1990 4976 4.695217 TTGGAGAACTGTGTGAAAACAC 57.305 40.909 2.05 2.05 40.78 3.32
1993 4979 3.560068 GGAGAACTGTGTGAAAACACGAT 59.440 43.478 4.68 0.00 43.12 3.73
2003 4989 6.252441 TGTGTGAAAACACGATCATTTGTTTC 59.748 34.615 14.27 7.76 43.53 2.78
2018 5004 6.900828 TCATTTGTTTCGTTGTTACTTGTACG 59.099 34.615 0.00 0.00 35.46 3.67
2048 5034 9.719355 TCAAGTTATTAGTATTGCTTGTGAAGA 57.281 29.630 0.00 0.00 35.96 2.87
2052 5038 9.974750 GTTATTAGTATTGCTTGTGAAGAAGAC 57.025 33.333 0.00 0.00 0.00 3.01
2062 5048 7.450074 TGCTTGTGAAGAAGACCTAATTTCTA 58.550 34.615 0.00 0.00 33.49 2.10
2064 5050 9.601217 GCTTGTGAAGAAGACCTAATTTCTATA 57.399 33.333 0.00 0.00 33.49 1.31
2078 5064 9.277783 CCTAATTTCTATAGTGATTGGTGAAGG 57.722 37.037 0.00 2.15 0.00 3.46
2085 5071 3.222603 AGTGATTGGTGAAGGGTTGTTC 58.777 45.455 0.00 0.00 0.00 3.18
2086 5072 2.955660 GTGATTGGTGAAGGGTTGTTCA 59.044 45.455 0.00 0.00 33.95 3.18
2089 5075 2.286365 TGGTGAAGGGTTGTTCATCC 57.714 50.000 0.00 0.00 36.82 3.51
2102 5105 5.396660 GGTTGTTCATCCTACCCCGTAATTA 60.397 44.000 0.00 0.00 0.00 1.40
2107 5110 4.586001 TCATCCTACCCCGTAATTACTGTC 59.414 45.833 13.56 0.00 0.00 3.51
2114 5117 3.119388 CCCCGTAATTACTGTCGACTTCA 60.119 47.826 17.92 0.00 0.00 3.02
2187 5190 0.530288 GGCAATTTTTAGCAGCGGGA 59.470 50.000 0.00 0.00 0.00 5.14
2191 5194 3.675775 GCAATTTTTAGCAGCGGGAATGA 60.676 43.478 0.00 0.00 0.00 2.57
2193 5196 2.192664 TTTTAGCAGCGGGAATGACA 57.807 45.000 0.00 0.00 0.00 3.58
2239 5243 8.452534 CAGGCAAATTTTGTGCAAATATAACAT 58.547 29.630 10.65 0.00 44.07 2.71
2298 5302 2.606725 CTGAGCATTTACAGAAGCCTCG 59.393 50.000 0.00 0.00 36.38 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.611355 CGTCATTGCCACAAAGTAAGTCTG 60.611 45.833 0.00 0.00 0.00 3.51
2 3 3.810373 CGTCATTGCCACAAAGTAAGTC 58.190 45.455 0.00 0.00 0.00 3.01
3 4 2.031157 GCGTCATTGCCACAAAGTAAGT 60.031 45.455 0.00 0.00 0.00 2.24
4 5 2.226437 AGCGTCATTGCCACAAAGTAAG 59.774 45.455 0.00 0.00 34.65 2.34
6 7 1.890876 AGCGTCATTGCCACAAAGTA 58.109 45.000 0.00 0.00 34.65 2.24
7 8 1.806542 CTAGCGTCATTGCCACAAAGT 59.193 47.619 0.00 0.00 34.65 2.66
13 14 0.613260 AGTTCCTAGCGTCATTGCCA 59.387 50.000 0.00 0.00 34.65 4.92
17 18 3.734293 GCGAACTAGTTCCTAGCGTCATT 60.734 47.826 26.12 0.00 37.57 2.57
51 52 0.332293 TGCATCAAGGGAGCAATCCA 59.668 50.000 0.00 0.00 34.97 3.41
63 65 3.943381 CACATCTAGGCTTCTTGCATCAA 59.057 43.478 0.00 0.00 45.15 2.57
65 67 2.877168 CCACATCTAGGCTTCTTGCATC 59.123 50.000 0.00 0.00 45.15 3.91
105 107 0.827368 ACGGGCAAACAACCAACATT 59.173 45.000 0.00 0.00 0.00 2.71
115 117 0.318360 CCGAGGAAAAACGGGCAAAC 60.318 55.000 0.00 0.00 44.59 2.93
122 124 1.081442 GCTTGGCCGAGGAAAAACG 60.081 57.895 22.06 0.00 0.00 3.60
159 161 6.094186 TGCTTGCACGGATTTTGTATGTATTA 59.906 34.615 0.00 0.00 0.00 0.98
167 169 1.869342 GCTTGCTTGCACGGATTTTGT 60.869 47.619 0.00 0.00 0.00 2.83
176 178 1.203065 GAGTGTTTGCTTGCTTGCAC 58.797 50.000 3.81 0.88 43.20 4.57
179 181 1.035139 AGGGAGTGTTTGCTTGCTTG 58.965 50.000 0.00 0.00 0.00 4.01
202 204 3.220110 CAATCACTCTCATCCCCCATTG 58.780 50.000 0.00 0.00 0.00 2.82
203 205 2.423947 GCAATCACTCTCATCCCCCATT 60.424 50.000 0.00 0.00 0.00 3.16
204 206 1.144503 GCAATCACTCTCATCCCCCAT 59.855 52.381 0.00 0.00 0.00 4.00
205 207 0.548031 GCAATCACTCTCATCCCCCA 59.452 55.000 0.00 0.00 0.00 4.96
231 3169 7.673926 ACTTTTGTCTATGGTTTGGTCCAATAT 59.326 33.333 4.80 3.71 41.09 1.28
232 3170 7.007723 ACTTTTGTCTATGGTTTGGTCCAATA 58.992 34.615 4.80 0.00 41.09 1.90
233 3171 5.838521 ACTTTTGTCTATGGTTTGGTCCAAT 59.161 36.000 4.80 0.00 41.09 3.16
259 3197 2.622064 ATATGTCTCAGGGGCGAAAC 57.378 50.000 0.00 0.00 0.00 2.78
266 3204 9.793252 CTTTTGTTCAAATAATATGTCTCAGGG 57.207 33.333 0.00 0.00 0.00 4.45
280 3218 7.174772 AGTTGGAAAGCAAACTTTTGTTCAAAT 59.825 29.630 3.74 0.00 46.20 2.32
315 3253 5.398012 GGCCTCTCCTATTTGGTTAGATGTT 60.398 44.000 0.00 0.00 37.07 2.71
348 3286 8.463456 AAGTAGCTAGTTGTCGTTTATCTTTC 57.537 34.615 13.11 0.00 0.00 2.62
358 3296 4.806330 TCCTTCAAAGTAGCTAGTTGTCG 58.194 43.478 14.55 6.90 0.00 4.35
382 3320 1.545582 CGGGGTGAGTCAAAAATGCAT 59.454 47.619 0.00 0.00 0.00 3.96
384 3322 0.388520 GCGGGGTGAGTCAAAAATGC 60.389 55.000 0.00 0.00 0.00 3.56
385 3323 1.247567 AGCGGGGTGAGTCAAAAATG 58.752 50.000 0.00 0.00 0.00 2.32
386 3324 2.871096 TAGCGGGGTGAGTCAAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
391 3329 1.676678 GCAGATAGCGGGGTGAGTCA 61.677 60.000 0.00 0.00 0.00 3.41
392 3330 1.068250 GCAGATAGCGGGGTGAGTC 59.932 63.158 0.00 0.00 0.00 3.36
393 3331 3.221222 GCAGATAGCGGGGTGAGT 58.779 61.111 0.00 0.00 0.00 3.41
413 3367 5.732331 ATATTTTGGAATGGAGGGAGTGA 57.268 39.130 0.00 0.00 0.00 3.41
414 3368 6.488006 CACTATATTTTGGAATGGAGGGAGTG 59.512 42.308 0.00 0.00 0.00 3.51
415 3369 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
417 3371 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
419 3373 4.821805 ACGCACTATATTTTGGAATGGAGG 59.178 41.667 0.00 0.00 0.00 4.30
420 3374 5.049405 GGACGCACTATATTTTGGAATGGAG 60.049 44.000 0.00 0.00 0.00 3.86
421 3375 4.819630 GGACGCACTATATTTTGGAATGGA 59.180 41.667 0.00 0.00 0.00 3.41
422 3376 4.319477 CGGACGCACTATATTTTGGAATGG 60.319 45.833 0.00 0.00 0.00 3.16
423 3377 4.272504 ACGGACGCACTATATTTTGGAATG 59.727 41.667 0.00 0.00 0.00 2.67
424 3378 4.448210 ACGGACGCACTATATTTTGGAAT 58.552 39.130 0.00 0.00 0.00 3.01
426 3380 3.530265 ACGGACGCACTATATTTTGGA 57.470 42.857 0.00 0.00 0.00 3.53
427 3381 5.917541 AATACGGACGCACTATATTTTGG 57.082 39.130 0.00 0.00 0.00 3.28
428 3382 7.109668 CGAAAAATACGGACGCACTATATTTTG 59.890 37.037 9.31 0.00 36.22 2.44
430 3384 6.476380 TCGAAAAATACGGACGCACTATATTT 59.524 34.615 0.00 0.00 0.00 1.40
431 3385 5.978919 TCGAAAAATACGGACGCACTATATT 59.021 36.000 0.00 0.00 0.00 1.28
432 3386 5.522456 TCGAAAAATACGGACGCACTATAT 58.478 37.500 0.00 0.00 0.00 0.86
433 3387 4.919206 TCGAAAAATACGGACGCACTATA 58.081 39.130 0.00 0.00 0.00 1.31
435 3389 3.173599 CTCGAAAAATACGGACGCACTA 58.826 45.455 0.00 0.00 0.00 2.74
436 3390 1.990563 CTCGAAAAATACGGACGCACT 59.009 47.619 0.00 0.00 0.00 4.40
437 3391 1.060122 CCTCGAAAAATACGGACGCAC 59.940 52.381 0.00 0.00 0.00 5.34
438 3392 1.337074 ACCTCGAAAAATACGGACGCA 60.337 47.619 0.00 0.00 0.00 5.24
439 3393 1.322637 GACCTCGAAAAATACGGACGC 59.677 52.381 0.00 0.00 0.00 5.19
440 3394 1.922545 GGACCTCGAAAAATACGGACG 59.077 52.381 0.00 0.00 0.00 4.79
441 3395 2.963432 TGGACCTCGAAAAATACGGAC 58.037 47.619 0.00 0.00 0.00 4.79
442 3396 3.007182 AGTTGGACCTCGAAAAATACGGA 59.993 43.478 0.00 0.00 0.00 4.69
443 3397 3.332034 AGTTGGACCTCGAAAAATACGG 58.668 45.455 0.00 0.00 0.00 4.02
444 3398 5.352643 AAAGTTGGACCTCGAAAAATACG 57.647 39.130 0.00 0.00 0.00 3.06
445 3399 7.080099 GGTTAAAGTTGGACCTCGAAAAATAC 58.920 38.462 0.00 0.00 0.00 1.89
446 3400 6.771749 TGGTTAAAGTTGGACCTCGAAAAATA 59.228 34.615 8.80 0.00 34.52 1.40
447 3401 5.595133 TGGTTAAAGTTGGACCTCGAAAAAT 59.405 36.000 8.80 0.00 34.52 1.82
448 3402 4.948621 TGGTTAAAGTTGGACCTCGAAAAA 59.051 37.500 8.80 0.00 34.52 1.94
449 3403 4.525024 TGGTTAAAGTTGGACCTCGAAAA 58.475 39.130 8.80 0.00 34.52 2.29
450 3404 4.153673 TGGTTAAAGTTGGACCTCGAAA 57.846 40.909 8.80 0.00 34.52 3.46
451 3405 3.842007 TGGTTAAAGTTGGACCTCGAA 57.158 42.857 8.80 0.00 34.52 3.71
452 3406 5.486735 TTATGGTTAAAGTTGGACCTCGA 57.513 39.130 8.80 0.00 34.52 4.04
453 3407 6.753107 ATTTATGGTTAAAGTTGGACCTCG 57.247 37.500 8.80 0.00 34.52 4.63
456 3410 9.426837 GGTTAAATTTATGGTTAAAGTTGGACC 57.573 33.333 0.00 1.82 36.56 4.46
457 3411 9.984190 TGGTTAAATTTATGGTTAAAGTTGGAC 57.016 29.630 0.00 2.05 36.56 4.02
466 3420 8.679100 CGGTCTCATTGGTTAAATTTATGGTTA 58.321 33.333 0.00 0.00 0.00 2.85
467 3421 7.394923 TCGGTCTCATTGGTTAAATTTATGGTT 59.605 33.333 0.00 0.00 0.00 3.67
468 3422 6.887545 TCGGTCTCATTGGTTAAATTTATGGT 59.112 34.615 0.00 0.00 0.00 3.55
469 3423 7.067008 AGTCGGTCTCATTGGTTAAATTTATGG 59.933 37.037 0.00 0.00 0.00 2.74
470 3424 7.910162 CAGTCGGTCTCATTGGTTAAATTTATG 59.090 37.037 0.00 0.00 0.00 1.90
471 3425 7.415206 GCAGTCGGTCTCATTGGTTAAATTTAT 60.415 37.037 0.00 0.00 0.00 1.40
472 3426 6.128117 GCAGTCGGTCTCATTGGTTAAATTTA 60.128 38.462 0.00 0.00 0.00 1.40
473 3427 5.335661 GCAGTCGGTCTCATTGGTTAAATTT 60.336 40.000 0.00 0.00 0.00 1.82
474 3428 4.156008 GCAGTCGGTCTCATTGGTTAAATT 59.844 41.667 0.00 0.00 0.00 1.82
475 3429 3.689649 GCAGTCGGTCTCATTGGTTAAAT 59.310 43.478 0.00 0.00 0.00 1.40
476 3430 3.071479 GCAGTCGGTCTCATTGGTTAAA 58.929 45.455 0.00 0.00 0.00 1.52
477 3431 2.695359 GCAGTCGGTCTCATTGGTTAA 58.305 47.619 0.00 0.00 0.00 2.01
478 3432 1.403647 CGCAGTCGGTCTCATTGGTTA 60.404 52.381 0.00 0.00 0.00 2.85
479 3433 0.670546 CGCAGTCGGTCTCATTGGTT 60.671 55.000 0.00 0.00 0.00 3.67
480 3434 1.079819 CGCAGTCGGTCTCATTGGT 60.080 57.895 0.00 0.00 0.00 3.67
481 3435 3.786101 CGCAGTCGGTCTCATTGG 58.214 61.111 0.00 0.00 0.00 3.16
491 3445 3.636313 TTTACTCCCGCCGCAGTCG 62.636 63.158 0.00 0.00 0.00 4.18
492 3446 0.952010 TTTTTACTCCCGCCGCAGTC 60.952 55.000 0.00 0.00 0.00 3.51
493 3447 0.322187 ATTTTTACTCCCGCCGCAGT 60.322 50.000 0.00 0.00 0.00 4.40
494 3448 0.808755 AATTTTTACTCCCGCCGCAG 59.191 50.000 0.00 0.00 0.00 5.18
495 3449 2.110901 TAATTTTTACTCCCGCCGCA 57.889 45.000 0.00 0.00 0.00 5.69
496 3450 3.703286 AATAATTTTTACTCCCGCCGC 57.297 42.857 0.00 0.00 0.00 6.53
497 3451 9.733219 TTAATTAAATAATTTTTACTCCCGCCG 57.267 29.630 3.91 0.00 37.16 6.46
542 3496 9.273016 CGGGAGTACAAATTATATCAGTGAATT 57.727 33.333 0.00 0.00 0.00 2.17
543 3497 8.429641 ACGGGAGTACAAATTATATCAGTGAAT 58.570 33.333 0.00 0.00 44.60 2.57
544 3498 7.788026 ACGGGAGTACAAATTATATCAGTGAA 58.212 34.615 0.00 0.00 44.60 3.18
545 3499 7.356089 ACGGGAGTACAAATTATATCAGTGA 57.644 36.000 0.00 0.00 44.60 3.41
550 3504 8.723294 GACTGCGACGGGAGTACAAATTATATC 61.723 44.444 0.00 0.00 45.69 1.63
551 3505 7.009260 GACTGCGACGGGAGTACAAATTATAT 61.009 42.308 0.00 0.00 45.69 0.86
552 3506 5.734220 GACTGCGACGGGAGTACAAATTATA 60.734 44.000 0.00 0.00 45.69 0.98
553 3507 4.972474 GACTGCGACGGGAGTACAAATTAT 60.972 45.833 0.00 0.00 45.69 1.28
554 3508 3.674138 GACTGCGACGGGAGTACAAATTA 60.674 47.826 0.00 0.00 45.69 1.40
555 3509 2.929592 GACTGCGACGGGAGTACAAATT 60.930 50.000 0.00 0.00 45.69 1.82
556 3510 1.403780 GACTGCGACGGGAGTACAAAT 60.404 52.381 0.00 0.00 45.69 2.32
557 3511 0.038892 GACTGCGACGGGAGTACAAA 60.039 55.000 0.00 0.00 45.69 2.83
558 3512 1.582968 GACTGCGACGGGAGTACAA 59.417 57.895 0.00 0.00 45.69 2.41
559 3513 2.683859 CGACTGCGACGGGAGTACA 61.684 63.158 0.00 0.00 45.69 2.90
560 3514 2.099831 CGACTGCGACGGGAGTAC 59.900 66.667 0.00 0.00 45.69 2.73
561 3515 3.129502 CCGACTGCGACGGGAGTA 61.130 66.667 10.40 0.00 45.69 2.59
567 3521 3.590443 AACGAGACCGACTGCGACG 62.590 63.158 0.00 0.00 40.82 5.12
568 3522 2.081212 CAACGAGACCGACTGCGAC 61.081 63.158 0.00 0.00 40.82 5.19
569 3523 1.583495 ATCAACGAGACCGACTGCGA 61.583 55.000 0.00 0.00 40.82 5.10
570 3524 0.732880 AATCAACGAGACCGACTGCG 60.733 55.000 0.00 0.00 39.50 5.18
571 3525 2.273370 TAATCAACGAGACCGACTGC 57.727 50.000 0.00 0.00 39.50 4.40
572 3526 5.779806 AATTTAATCAACGAGACCGACTG 57.220 39.130 0.00 0.00 39.50 3.51
573 3527 7.762615 TCATAAATTTAATCAACGAGACCGACT 59.237 33.333 1.21 0.00 39.50 4.18
574 3528 7.902032 TCATAAATTTAATCAACGAGACCGAC 58.098 34.615 1.21 0.00 39.50 4.79
575 3529 8.657074 ATCATAAATTTAATCAACGAGACCGA 57.343 30.769 1.21 0.00 39.50 4.69
576 3530 8.547894 TGATCATAAATTTAATCAACGAGACCG 58.452 33.333 9.24 0.00 42.50 4.79
589 3543 9.340695 CGTGCTTCAACTTTGATCATAAATTTA 57.659 29.630 0.00 0.00 37.00 1.40
590 3544 8.081633 TCGTGCTTCAACTTTGATCATAAATTT 58.918 29.630 0.00 0.00 37.00 1.82
591 3545 7.592938 TCGTGCTTCAACTTTGATCATAAATT 58.407 30.769 0.00 0.00 37.00 1.82
592 3546 7.119699 TCTCGTGCTTCAACTTTGATCATAAAT 59.880 33.333 0.00 0.00 37.00 1.40
593 3547 6.426633 TCTCGTGCTTCAACTTTGATCATAAA 59.573 34.615 0.00 0.00 37.00 1.40
594 3548 5.931724 TCTCGTGCTTCAACTTTGATCATAA 59.068 36.000 0.00 0.00 37.00 1.90
595 3549 5.478407 TCTCGTGCTTCAACTTTGATCATA 58.522 37.500 0.00 0.00 37.00 2.15
596 3550 4.318332 TCTCGTGCTTCAACTTTGATCAT 58.682 39.130 0.00 0.00 37.00 2.45
597 3551 3.727726 TCTCGTGCTTCAACTTTGATCA 58.272 40.909 0.00 0.00 37.00 2.92
598 3552 4.732285 TTCTCGTGCTTCAACTTTGATC 57.268 40.909 0.00 0.00 37.00 2.92
599 3553 6.992063 ATATTCTCGTGCTTCAACTTTGAT 57.008 33.333 0.00 0.00 37.00 2.57
600 3554 7.320399 TCTATATTCTCGTGCTTCAACTTTGA 58.680 34.615 0.00 0.00 34.92 2.69
601 3555 7.525688 TCTATATTCTCGTGCTTCAACTTTG 57.474 36.000 0.00 0.00 0.00 2.77
602 3556 8.547967 TTTCTATATTCTCGTGCTTCAACTTT 57.452 30.769 0.00 0.00 0.00 2.66
603 3557 8.723942 ATTTCTATATTCTCGTGCTTCAACTT 57.276 30.769 0.00 0.00 0.00 2.66
604 3558 7.168302 CGATTTCTATATTCTCGTGCTTCAACT 59.832 37.037 0.00 0.00 0.00 3.16
605 3559 7.277205 CGATTTCTATATTCTCGTGCTTCAAC 58.723 38.462 0.00 0.00 0.00 3.18
606 3560 6.074302 GCGATTTCTATATTCTCGTGCTTCAA 60.074 38.462 0.00 0.00 0.00 2.69
607 3561 5.402568 GCGATTTCTATATTCTCGTGCTTCA 59.597 40.000 0.00 0.00 0.00 3.02
608 3562 5.631512 AGCGATTTCTATATTCTCGTGCTTC 59.368 40.000 0.00 0.00 0.00 3.86
609 3563 5.533482 AGCGATTTCTATATTCTCGTGCTT 58.467 37.500 0.00 0.00 0.00 3.91
610 3564 5.127693 AGCGATTTCTATATTCTCGTGCT 57.872 39.130 0.00 0.00 0.00 4.40
611 3565 8.789881 ATATAGCGATTTCTATATTCTCGTGC 57.210 34.615 0.00 0.00 38.45 5.34
621 3575 9.739276 TCCATTCCAAAATATAGCGATTTCTAT 57.261 29.630 0.00 0.00 34.03 1.98
622 3576 9.567776 TTCCATTCCAAAATATAGCGATTTCTA 57.432 29.630 0.00 0.00 0.00 2.10
623 3577 8.463930 TTCCATTCCAAAATATAGCGATTTCT 57.536 30.769 0.00 0.00 0.00 2.52
624 3578 9.132521 CATTCCATTCCAAAATATAGCGATTTC 57.867 33.333 0.00 0.00 0.00 2.17
625 3579 8.859090 TCATTCCATTCCAAAATATAGCGATTT 58.141 29.630 0.00 0.00 0.00 2.17
626 3580 8.408043 TCATTCCATTCCAAAATATAGCGATT 57.592 30.769 0.00 0.00 0.00 3.34
627 3581 7.667219 ACTCATTCCATTCCAAAATATAGCGAT 59.333 33.333 0.00 0.00 0.00 4.58
628 3582 6.998074 ACTCATTCCATTCCAAAATATAGCGA 59.002 34.615 0.00 0.00 0.00 4.93
629 3583 7.206981 ACTCATTCCATTCCAAAATATAGCG 57.793 36.000 0.00 0.00 0.00 4.26
635 3589 8.814931 TGAAACATACTCATTCCATTCCAAAAT 58.185 29.630 0.00 0.00 0.00 1.82
636 3590 8.187913 TGAAACATACTCATTCCATTCCAAAA 57.812 30.769 0.00 0.00 0.00 2.44
637 3591 7.773489 TGAAACATACTCATTCCATTCCAAA 57.227 32.000 0.00 0.00 0.00 3.28
638 3592 7.669304 TCTTGAAACATACTCATTCCATTCCAA 59.331 33.333 0.00 0.00 0.00 3.53
639 3593 7.174413 TCTTGAAACATACTCATTCCATTCCA 58.826 34.615 0.00 0.00 0.00 3.53
640 3594 7.630242 TCTTGAAACATACTCATTCCATTCC 57.370 36.000 0.00 0.00 0.00 3.01
641 3595 7.699812 GCTTCTTGAAACATACTCATTCCATTC 59.300 37.037 0.00 0.00 0.00 2.67
642 3596 7.177216 TGCTTCTTGAAACATACTCATTCCATT 59.823 33.333 0.00 0.00 0.00 3.16
643 3597 6.660521 TGCTTCTTGAAACATACTCATTCCAT 59.339 34.615 0.00 0.00 0.00 3.41
644 3598 6.003326 TGCTTCTTGAAACATACTCATTCCA 58.997 36.000 0.00 0.00 0.00 3.53
645 3599 6.500684 TGCTTCTTGAAACATACTCATTCC 57.499 37.500 0.00 0.00 0.00 3.01
646 3600 7.540055 CCTTTGCTTCTTGAAACATACTCATTC 59.460 37.037 0.00 0.00 0.00 2.67
647 3601 7.231317 TCCTTTGCTTCTTGAAACATACTCATT 59.769 33.333 0.00 0.00 0.00 2.57
648 3602 6.716628 TCCTTTGCTTCTTGAAACATACTCAT 59.283 34.615 0.00 0.00 0.00 2.90
649 3603 6.017109 GTCCTTTGCTTCTTGAAACATACTCA 60.017 38.462 0.00 0.00 0.00 3.41
650 3604 6.374578 GTCCTTTGCTTCTTGAAACATACTC 58.625 40.000 0.00 0.00 0.00 2.59
651 3605 5.241728 GGTCCTTTGCTTCTTGAAACATACT 59.758 40.000 0.00 0.00 0.00 2.12
659 3613 3.831323 TCATTGGTCCTTTGCTTCTTGA 58.169 40.909 0.00 0.00 0.00 3.02
689 3643 3.390639 TGGGTTTGTTTCTTGCAATCCAT 59.609 39.130 0.00 0.00 37.41 3.41
843 3798 2.978824 CGGATGGAGTGGACGGTT 59.021 61.111 0.00 0.00 0.00 4.44
1065 4027 2.029288 CTGGATGTTGTCGCGCAGT 61.029 57.895 8.75 0.00 0.00 4.40
1315 4277 2.035321 GTCTAGCTACTGATCTGGTGGC 59.965 54.545 15.63 15.63 40.63 5.01
1332 4294 4.924305 ACTACCAAACAACGACAGTCTA 57.076 40.909 0.00 0.00 0.00 2.59
1333 4295 3.814005 ACTACCAAACAACGACAGTCT 57.186 42.857 0.00 0.00 0.00 3.24
1356 4320 2.740055 GGACCACGAGCACTGCTG 60.740 66.667 8.69 3.68 39.88 4.41
1364 4328 3.254060 CATTACACAAGAGGACCACGAG 58.746 50.000 0.00 0.00 0.00 4.18
1376 4340 2.009051 CGAGATGCTGCCATTACACAA 58.991 47.619 0.00 0.00 0.00 3.33
1377 4341 1.655484 CGAGATGCTGCCATTACACA 58.345 50.000 0.00 0.00 0.00 3.72
1405 4373 3.394606 AGTACATCCAGACAACAAGGGTT 59.605 43.478 0.00 0.00 37.87 4.11
1406 4374 2.979678 AGTACATCCAGACAACAAGGGT 59.020 45.455 0.00 0.00 0.00 4.34
1428 4405 6.064717 GCTACAATTTCCATTCCATCCTAGT 58.935 40.000 0.00 0.00 0.00 2.57
1449 4431 2.487762 CGAATTCAAGGGCAAACTGCTA 59.512 45.455 6.22 0.00 44.28 3.49
1458 4440 5.123936 AGAATAGGTAACGAATTCAAGGGC 58.876 41.667 6.22 0.00 42.71 5.19
1482 4464 1.686355 ACAAACATCAACAGGCCGAA 58.314 45.000 0.00 0.00 0.00 4.30
1484 4466 1.662876 CGAACAAACATCAACAGGCCG 60.663 52.381 0.00 0.00 0.00 6.13
1487 4469 2.384382 GCACGAACAAACATCAACAGG 58.616 47.619 0.00 0.00 0.00 4.00
1522 4505 0.040958 CAACTGAAGAACGCACTGGC 60.041 55.000 0.00 0.00 0.00 4.85
1560 4543 2.978000 CAAACGGATTTGGGGGCC 59.022 61.111 0.00 0.00 41.39 5.80
1572 4555 2.252260 CCGAAGCCAGCACAAACG 59.748 61.111 0.00 0.00 0.00 3.60
1574 4557 1.034838 AACACCGAAGCCAGCACAAA 61.035 50.000 0.00 0.00 0.00 2.83
1580 4563 0.804989 GATCCAAACACCGAAGCCAG 59.195 55.000 0.00 0.00 0.00 4.85
1610 4593 1.152984 CACCACACACTGGAGGCAA 60.153 57.895 0.00 0.00 43.95 4.52
1611 4594 2.510411 CACCACACACTGGAGGCA 59.490 61.111 0.00 0.00 43.95 4.75
1612 4595 2.281761 CCACCACACACTGGAGGC 60.282 66.667 0.00 0.00 43.21 4.70
1614 4597 1.072173 TGAATCCACCACACACTGGAG 59.928 52.381 0.00 0.00 43.95 3.86
1615 4598 1.135960 TGAATCCACCACACACTGGA 58.864 50.000 0.00 0.00 43.95 3.86
1617 4600 2.034558 GGTTTGAATCCACCACACACTG 59.965 50.000 0.00 0.00 32.74 3.66
1618 4601 2.306847 GGTTTGAATCCACCACACACT 58.693 47.619 0.00 0.00 32.74 3.55
1619 4602 2.028130 TGGTTTGAATCCACCACACAC 58.972 47.619 0.00 0.00 38.20 3.82
1620 4603 2.443958 TGGTTTGAATCCACCACACA 57.556 45.000 0.00 0.00 38.20 3.72
1621 4604 3.810310 TTTGGTTTGAATCCACCACAC 57.190 42.857 1.24 0.00 43.02 3.82
1622 4605 4.599047 GATTTGGTTTGAATCCACCACA 57.401 40.909 1.24 0.00 43.02 4.17
1642 4625 0.550914 AGAAGCCAAACACAGTGGGA 59.449 50.000 0.00 0.00 36.58 4.37
1644 4627 1.066002 CACAGAAGCCAAACACAGTGG 59.934 52.381 5.31 0.00 39.33 4.00
1645 4628 1.745087 ACACAGAAGCCAAACACAGTG 59.255 47.619 0.00 0.00 0.00 3.66
1647 4630 3.181397 CAAACACAGAAGCCAAACACAG 58.819 45.455 0.00 0.00 0.00 3.66
1652 4635 1.480137 CCACCAAACACAGAAGCCAAA 59.520 47.619 0.00 0.00 0.00 3.28
1694 4677 3.859411 TCCAAACACTGAAACCAACAC 57.141 42.857 0.00 0.00 0.00 3.32
1731 4715 4.082679 ACCAAACACTGAAGCAACGTAAAA 60.083 37.500 0.00 0.00 0.00 1.52
1735 4719 1.132262 CACCAAACACTGAAGCAACGT 59.868 47.619 0.00 0.00 0.00 3.99
1736 4720 1.533756 CCACCAAACACTGAAGCAACG 60.534 52.381 0.00 0.00 0.00 4.10
1759 4744 6.520272 CCAACACAAATAGGATTTGGTTTGA 58.480 36.000 19.31 0.00 35.93 2.69
1811 4796 0.739112 AGCAGCAGAAGAGCGCTTAC 60.739 55.000 13.26 6.33 39.87 2.34
1834 4819 4.451096 AGCACTACAAGTTTAACATCACGG 59.549 41.667 0.00 0.00 0.00 4.94
1865 4851 6.537301 AGTTTGACGTCACAGATAGTTCAAAA 59.463 34.615 19.90 1.74 0.00 2.44
1869 4855 5.462398 ACAAGTTTGACGTCACAGATAGTTC 59.538 40.000 19.90 0.00 0.00 3.01
1895 4881 0.250901 ACCCACAGAGGCACACATTC 60.251 55.000 0.00 0.00 35.39 2.67
1946 4932 2.033299 TGCACTTGTTCAGTAAAGCAGC 59.967 45.455 0.00 0.00 32.76 5.25
1947 4933 3.969117 TGCACTTGTTCAGTAAAGCAG 57.031 42.857 0.00 0.00 32.76 4.24
1948 4934 4.916983 AATGCACTTGTTCAGTAAAGCA 57.083 36.364 0.00 0.00 36.61 3.91
1949 4935 4.445385 CCAAATGCACTTGTTCAGTAAAGC 59.555 41.667 7.18 0.00 32.76 3.51
1950 4936 5.830912 TCCAAATGCACTTGTTCAGTAAAG 58.169 37.500 7.18 0.00 32.76 1.85
1951 4937 5.592282 TCTCCAAATGCACTTGTTCAGTAAA 59.408 36.000 7.18 0.00 32.76 2.01
1952 4938 5.129634 TCTCCAAATGCACTTGTTCAGTAA 58.870 37.500 7.18 0.00 32.76 2.24
1953 4939 4.713553 TCTCCAAATGCACTTGTTCAGTA 58.286 39.130 7.18 0.00 32.76 2.74
1954 4940 3.554934 TCTCCAAATGCACTTGTTCAGT 58.445 40.909 7.18 0.00 35.35 3.41
1990 4976 6.631238 ACAAGTAACAACGAAACAAATGATCG 59.369 34.615 10.27 10.27 42.05 3.69
1993 4979 6.900828 CGTACAAGTAACAACGAAACAAATGA 59.099 34.615 0.00 0.00 37.53 2.57
2048 5034 9.838339 CACCAATCACTATAGAAATTAGGTCTT 57.162 33.333 6.78 0.00 0.00 3.01
2052 5038 9.277783 CCTTCACCAATCACTATAGAAATTAGG 57.722 37.037 6.78 11.00 0.00 2.69
2062 5048 4.657814 ACAACCCTTCACCAATCACTAT 57.342 40.909 0.00 0.00 0.00 2.12
2064 5050 3.222603 GAACAACCCTTCACCAATCACT 58.777 45.455 0.00 0.00 0.00 3.41
2078 5064 0.616891 ACGGGGTAGGATGAACAACC 59.383 55.000 0.00 0.00 0.00 3.77
2085 5071 4.558095 CGACAGTAATTACGGGGTAGGATG 60.558 50.000 18.17 7.28 0.00 3.51
2086 5072 3.571401 CGACAGTAATTACGGGGTAGGAT 59.429 47.826 18.17 0.00 0.00 3.24
2089 5075 3.629398 AGTCGACAGTAATTACGGGGTAG 59.371 47.826 19.50 13.54 0.00 3.18
2102 5105 1.007271 CGCCAGTGAAGTCGACAGT 60.007 57.895 19.50 4.69 0.00 3.55
2114 5117 1.608590 CAAAATTCACCACTCGCCAGT 59.391 47.619 0.00 0.00 0.00 4.00
2149 5152 1.271934 CCCTCTGCTGTATCGATCAGG 59.728 57.143 19.63 8.79 33.98 3.86
2239 5243 7.589395 TCTGAAATTGCTGCGAATTTTTAGTA 58.411 30.769 17.51 10.33 36.00 1.82
2245 5249 5.807011 GGTATTCTGAAATTGCTGCGAATTT 59.193 36.000 16.87 16.87 38.07 1.82
2247 5251 4.398988 TGGTATTCTGAAATTGCTGCGAAT 59.601 37.500 0.00 0.00 0.00 3.34
2249 5253 3.342719 TGGTATTCTGAAATTGCTGCGA 58.657 40.909 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.