Multiple sequence alignment - TraesCS1A01G361700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G361700 chr1A 100.000 2599 0 0 1 2599 542169359 542171957 0.000000e+00 4800
1 TraesCS1A01G361700 chr1A 92.489 892 48 13 735 1617 541381091 541381972 0.000000e+00 1258
2 TraesCS1A01G361700 chr1A 85.598 986 91 30 746 1728 542358225 542359162 0.000000e+00 987
3 TraesCS1A01G361700 chr1D 90.628 971 70 12 735 1704 445387258 445386308 0.000000e+00 1269
4 TraesCS1A01G361700 chr1D 92.849 881 43 10 555 1433 446436656 446437518 0.000000e+00 1260
5 TraesCS1A01G361700 chr1D 90.114 880 56 15 1735 2599 445386309 445385446 0.000000e+00 1114
6 TraesCS1A01G361700 chr1D 84.584 986 110 29 746 1715 446558217 446559176 0.000000e+00 941
7 TraesCS1A01G361700 chr1D 90.608 724 32 15 897 1618 445317469 445318158 0.000000e+00 928
8 TraesCS1A01G361700 chr1D 79.821 223 24 14 259 479 446436351 446436554 2.700000e-30 143
9 TraesCS1A01G361700 chr1B 89.300 972 68 17 735 1705 608463170 608462234 0.000000e+00 1186
10 TraesCS1A01G361700 chr1B 91.274 871 44 14 565 1433 610560333 610561173 0.000000e+00 1158
11 TraesCS1A01G361700 chr1B 85.520 884 67 27 746 1618 606839665 606840498 0.000000e+00 867
12 TraesCS1A01G361700 chr1B 84.580 882 98 30 745 1604 608054108 608053243 0.000000e+00 841
13 TraesCS1A01G361700 chr1B 84.500 200 21 7 1770 1962 556350099 556349903 3.410000e-44 189
14 TraesCS1A01G361700 chr6A 88.811 715 43 22 735 1443 67142348 67141665 0.000000e+00 843
15 TraesCS1A01G361700 chr2B 85.253 217 30 2 1684 1900 736371792 736372006 3.370000e-54 222
16 TraesCS1A01G361700 chr7A 86.473 207 17 8 1770 1967 500547382 500547178 1.570000e-52 217
17 TraesCS1A01G361700 chrUn 85.075 134 14 5 1796 1926 123973617 123973487 5.840000e-27 132
18 TraesCS1A01G361700 chrUn 85.496 131 13 5 1796 1923 131819963 131820090 5.840000e-27 132
19 TraesCS1A01G361700 chr3B 85.496 131 13 5 1796 1923 515161248 515161375 5.840000e-27 132
20 TraesCS1A01G361700 chr3B 84.559 136 15 5 1794 1926 518932983 518932851 2.100000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G361700 chr1A 542169359 542171957 2598 False 4800.0 4800 100.000 1 2599 1 chr1A.!!$F2 2598
1 TraesCS1A01G361700 chr1A 541381091 541381972 881 False 1258.0 1258 92.489 735 1617 1 chr1A.!!$F1 882
2 TraesCS1A01G361700 chr1A 542358225 542359162 937 False 987.0 987 85.598 746 1728 1 chr1A.!!$F3 982
3 TraesCS1A01G361700 chr1D 445385446 445387258 1812 True 1191.5 1269 90.371 735 2599 2 chr1D.!!$R1 1864
4 TraesCS1A01G361700 chr1D 446558217 446559176 959 False 941.0 941 84.584 746 1715 1 chr1D.!!$F2 969
5 TraesCS1A01G361700 chr1D 445317469 445318158 689 False 928.0 928 90.608 897 1618 1 chr1D.!!$F1 721
6 TraesCS1A01G361700 chr1D 446436351 446437518 1167 False 701.5 1260 86.335 259 1433 2 chr1D.!!$F3 1174
7 TraesCS1A01G361700 chr1B 608462234 608463170 936 True 1186.0 1186 89.300 735 1705 1 chr1B.!!$R3 970
8 TraesCS1A01G361700 chr1B 610560333 610561173 840 False 1158.0 1158 91.274 565 1433 1 chr1B.!!$F2 868
9 TraesCS1A01G361700 chr1B 606839665 606840498 833 False 867.0 867 85.520 746 1618 1 chr1B.!!$F1 872
10 TraesCS1A01G361700 chr1B 608053243 608054108 865 True 841.0 841 84.580 745 1604 1 chr1B.!!$R2 859
11 TraesCS1A01G361700 chr6A 67141665 67142348 683 True 843.0 843 88.811 735 1443 1 chr6A.!!$R1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.03213 CAGCGCCACGGTAGTATCAT 59.968 55.0 2.29 0.0 35.27 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1899 0.035458 CTGAAGGACGAGCCAAGGTT 59.965 55.0 0.0 0.0 40.02 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.906660 CGTAGGTTCAGACTTGGCA 57.093 52.632 0.00 0.00 0.00 4.92
43 44 1.714794 CGTAGGTTCAGACTTGGCAG 58.285 55.000 0.00 0.00 0.00 4.85
44 45 1.443802 GTAGGTTCAGACTTGGCAGC 58.556 55.000 0.00 0.00 0.00 5.25
45 46 1.055849 TAGGTTCAGACTTGGCAGCA 58.944 50.000 0.00 0.00 0.00 4.41
46 47 0.403271 AGGTTCAGACTTGGCAGCAT 59.597 50.000 0.00 0.00 0.00 3.79
47 48 0.807496 GGTTCAGACTTGGCAGCATC 59.193 55.000 0.00 0.00 0.00 3.91
48 49 1.612726 GGTTCAGACTTGGCAGCATCT 60.613 52.381 0.00 0.00 0.00 2.90
49 50 1.467734 GTTCAGACTTGGCAGCATCTG 59.532 52.381 14.97 14.97 39.99 2.90
50 51 0.978907 TCAGACTTGGCAGCATCTGA 59.021 50.000 18.13 18.13 44.05 3.27
51 52 1.348696 TCAGACTTGGCAGCATCTGAA 59.651 47.619 19.17 8.10 43.47 3.02
52 53 1.738350 CAGACTTGGCAGCATCTGAAG 59.262 52.381 15.70 0.00 40.92 3.02
53 54 1.627329 AGACTTGGCAGCATCTGAAGA 59.373 47.619 0.00 0.00 32.44 2.87
54 55 2.239150 AGACTTGGCAGCATCTGAAGAT 59.761 45.455 0.00 0.00 32.44 2.40
68 69 7.636150 CATCTGAAGATGGATTGGTAACTTT 57.364 36.000 11.76 0.00 46.09 2.66
69 70 8.059798 CATCTGAAGATGGATTGGTAACTTTT 57.940 34.615 11.76 0.00 46.09 2.27
70 71 8.526147 CATCTGAAGATGGATTGGTAACTTTTT 58.474 33.333 11.76 0.00 46.09 1.94
84 85 3.124686 TTTTTGTGACCGGCCAGC 58.875 55.556 0.00 0.00 0.00 4.85
85 86 2.840066 TTTTTGTGACCGGCCAGCG 61.840 57.895 0.00 0.00 0.00 5.18
96 97 4.137872 GCCAGCGCCACGGTAGTA 62.138 66.667 2.29 0.00 35.27 1.82
97 98 2.812499 CCAGCGCCACGGTAGTAT 59.188 61.111 2.29 0.00 35.27 2.12
98 99 1.299926 CCAGCGCCACGGTAGTATC 60.300 63.158 2.29 0.00 35.27 2.24
99 100 1.435925 CAGCGCCACGGTAGTATCA 59.564 57.895 2.29 0.00 35.27 2.15
100 101 0.032130 CAGCGCCACGGTAGTATCAT 59.968 55.000 2.29 0.00 35.27 2.45
101 102 0.314302 AGCGCCACGGTAGTATCATC 59.686 55.000 2.29 0.00 35.27 2.92
102 103 0.314302 GCGCCACGGTAGTATCATCT 59.686 55.000 0.00 0.00 0.00 2.90
103 104 1.538512 GCGCCACGGTAGTATCATCTA 59.461 52.381 0.00 0.00 0.00 1.98
104 105 2.667724 GCGCCACGGTAGTATCATCTAC 60.668 54.545 0.00 0.00 39.40 2.59
105 106 2.551032 CGCCACGGTAGTATCATCTACA 59.449 50.000 6.27 0.00 41.20 2.74
106 107 3.365064 CGCCACGGTAGTATCATCTACAG 60.365 52.174 6.27 4.79 41.20 2.74
107 108 3.568853 GCCACGGTAGTATCATCTACAGT 59.431 47.826 6.27 5.33 45.08 3.55
108 109 4.037684 GCCACGGTAGTATCATCTACAGTT 59.962 45.833 6.85 0.00 43.02 3.16
109 110 5.759963 CCACGGTAGTATCATCTACAGTTC 58.240 45.833 6.85 0.00 43.02 3.01
110 111 5.441543 CACGGTAGTATCATCTACAGTTCG 58.558 45.833 6.85 3.85 43.02 3.95
111 112 4.514441 ACGGTAGTATCATCTACAGTTCGG 59.486 45.833 6.27 0.00 43.02 4.30
112 113 4.083431 CGGTAGTATCATCTACAGTTCGGG 60.083 50.000 6.27 0.00 41.20 5.14
113 114 4.217983 GGTAGTATCATCTACAGTTCGGGG 59.782 50.000 6.27 0.00 41.20 5.73
114 115 3.912248 AGTATCATCTACAGTTCGGGGT 58.088 45.455 0.00 0.00 0.00 4.95
115 116 4.287552 AGTATCATCTACAGTTCGGGGTT 58.712 43.478 0.00 0.00 0.00 4.11
116 117 3.543680 ATCATCTACAGTTCGGGGTTG 57.456 47.619 0.00 0.00 0.00 3.77
117 118 2.253610 TCATCTACAGTTCGGGGTTGT 58.746 47.619 0.00 0.00 0.00 3.32
118 119 2.028476 TCATCTACAGTTCGGGGTTGTG 60.028 50.000 0.00 0.00 0.00 3.33
119 120 1.707106 TCTACAGTTCGGGGTTGTGA 58.293 50.000 0.00 0.00 0.00 3.58
120 121 2.253610 TCTACAGTTCGGGGTTGTGAT 58.746 47.619 0.00 0.00 0.00 3.06
121 122 3.433343 TCTACAGTTCGGGGTTGTGATA 58.567 45.455 0.00 0.00 0.00 2.15
122 123 4.028131 TCTACAGTTCGGGGTTGTGATAT 58.972 43.478 0.00 0.00 0.00 1.63
123 124 3.261981 ACAGTTCGGGGTTGTGATATC 57.738 47.619 0.00 0.00 0.00 1.63
124 125 2.838202 ACAGTTCGGGGTTGTGATATCT 59.162 45.455 3.98 0.00 0.00 1.98
125 126 3.263425 ACAGTTCGGGGTTGTGATATCTT 59.737 43.478 3.98 0.00 0.00 2.40
126 127 4.261801 CAGTTCGGGGTTGTGATATCTTT 58.738 43.478 3.98 0.00 0.00 2.52
127 128 4.094887 CAGTTCGGGGTTGTGATATCTTTG 59.905 45.833 3.98 0.00 0.00 2.77
128 129 3.275617 TCGGGGTTGTGATATCTTTGG 57.724 47.619 3.98 0.00 0.00 3.28
129 130 1.676006 CGGGGTTGTGATATCTTTGGC 59.324 52.381 3.98 0.00 0.00 4.52
130 131 2.733956 GGGGTTGTGATATCTTTGGCA 58.266 47.619 3.98 0.00 0.00 4.92
131 132 2.427095 GGGGTTGTGATATCTTTGGCAC 59.573 50.000 3.98 0.00 0.00 5.01
132 133 3.088532 GGGTTGTGATATCTTTGGCACA 58.911 45.455 3.98 0.00 39.27 4.57
133 134 3.701040 GGGTTGTGATATCTTTGGCACAT 59.299 43.478 3.98 0.00 40.51 3.21
134 135 4.160252 GGGTTGTGATATCTTTGGCACATT 59.840 41.667 3.98 0.00 40.51 2.71
135 136 5.337491 GGGTTGTGATATCTTTGGCACATTT 60.337 40.000 3.98 0.00 40.51 2.32
136 137 5.577945 GGTTGTGATATCTTTGGCACATTTG 59.422 40.000 3.98 0.00 40.51 2.32
137 138 5.981088 TGTGATATCTTTGGCACATTTGT 57.019 34.783 3.98 0.00 39.30 2.83
138 139 6.343716 TGTGATATCTTTGGCACATTTGTT 57.656 33.333 3.98 0.00 39.30 2.83
139 140 6.757237 TGTGATATCTTTGGCACATTTGTTT 58.243 32.000 3.98 0.00 39.30 2.83
140 141 6.867816 TGTGATATCTTTGGCACATTTGTTTC 59.132 34.615 3.98 0.00 39.30 2.78
141 142 7.092716 GTGATATCTTTGGCACATTTGTTTCT 58.907 34.615 3.98 0.00 39.30 2.52
142 143 7.599998 GTGATATCTTTGGCACATTTGTTTCTT 59.400 33.333 3.98 0.00 39.30 2.52
143 144 7.814107 TGATATCTTTGGCACATTTGTTTCTTC 59.186 33.333 3.98 0.00 39.30 2.87
144 145 5.336150 TCTTTGGCACATTTGTTTCTTCA 57.664 34.783 0.00 0.00 39.30 3.02
145 146 5.916318 TCTTTGGCACATTTGTTTCTTCAT 58.084 33.333 0.00 0.00 39.30 2.57
146 147 6.347696 TCTTTGGCACATTTGTTTCTTCATT 58.652 32.000 0.00 0.00 39.30 2.57
147 148 6.479660 TCTTTGGCACATTTGTTTCTTCATTC 59.520 34.615 0.00 0.00 39.30 2.67
148 149 5.273674 TGGCACATTTGTTTCTTCATTCA 57.726 34.783 0.00 0.00 0.00 2.57
149 150 5.291178 TGGCACATTTGTTTCTTCATTCAG 58.709 37.500 0.00 0.00 0.00 3.02
150 151 4.687483 GGCACATTTGTTTCTTCATTCAGG 59.313 41.667 0.00 0.00 0.00 3.86
151 152 5.509501 GGCACATTTGTTTCTTCATTCAGGA 60.510 40.000 0.00 0.00 0.00 3.86
152 153 5.403466 GCACATTTGTTTCTTCATTCAGGAC 59.597 40.000 0.00 0.00 0.00 3.85
153 154 5.922544 CACATTTGTTTCTTCATTCAGGACC 59.077 40.000 0.00 0.00 0.00 4.46
154 155 4.829064 TTTGTTTCTTCATTCAGGACCG 57.171 40.909 0.00 0.00 0.00 4.79
155 156 3.762407 TGTTTCTTCATTCAGGACCGA 57.238 42.857 0.00 0.00 0.00 4.69
156 157 3.664107 TGTTTCTTCATTCAGGACCGAG 58.336 45.455 0.00 0.00 0.00 4.63
157 158 3.003480 GTTTCTTCATTCAGGACCGAGG 58.997 50.000 0.00 0.00 0.00 4.63
158 159 2.231716 TCTTCATTCAGGACCGAGGA 57.768 50.000 0.00 0.00 0.00 3.71
159 160 2.103373 TCTTCATTCAGGACCGAGGAG 58.897 52.381 0.00 0.00 0.00 3.69
160 161 2.103373 CTTCATTCAGGACCGAGGAGA 58.897 52.381 0.00 0.00 0.00 3.71
161 162 1.769026 TCATTCAGGACCGAGGAGAG 58.231 55.000 0.00 0.00 0.00 3.20
162 163 0.749649 CATTCAGGACCGAGGAGAGG 59.250 60.000 0.00 0.00 0.00 3.69
163 164 0.631753 ATTCAGGACCGAGGAGAGGA 59.368 55.000 0.00 0.00 0.00 3.71
164 165 0.033991 TTCAGGACCGAGGAGAGGAG 60.034 60.000 0.00 0.00 0.00 3.69
165 166 1.208844 TCAGGACCGAGGAGAGGAGT 61.209 60.000 0.00 0.00 0.00 3.85
166 167 0.750182 CAGGACCGAGGAGAGGAGTC 60.750 65.000 0.00 0.00 0.00 3.36
167 168 1.208844 AGGACCGAGGAGAGGAGTCA 61.209 60.000 0.00 0.00 0.00 3.41
168 169 0.323542 GGACCGAGGAGAGGAGTCAA 60.324 60.000 0.00 0.00 0.00 3.18
169 170 1.099689 GACCGAGGAGAGGAGTCAAG 58.900 60.000 0.00 0.00 0.00 3.02
170 171 0.406361 ACCGAGGAGAGGAGTCAAGT 59.594 55.000 0.00 0.00 0.00 3.16
171 172 0.814457 CCGAGGAGAGGAGTCAAGTG 59.186 60.000 0.00 0.00 0.00 3.16
172 173 1.614583 CCGAGGAGAGGAGTCAAGTGA 60.615 57.143 0.00 0.00 0.00 3.41
173 174 1.742831 CGAGGAGAGGAGTCAAGTGAG 59.257 57.143 0.00 0.00 0.00 3.51
174 175 2.802719 GAGGAGAGGAGTCAAGTGAGT 58.197 52.381 0.00 0.00 0.00 3.41
175 176 2.491693 GAGGAGAGGAGTCAAGTGAGTG 59.508 54.545 0.00 0.00 0.00 3.51
176 177 2.109128 AGGAGAGGAGTCAAGTGAGTGA 59.891 50.000 0.00 0.00 0.00 3.41
177 178 2.230266 GGAGAGGAGTCAAGTGAGTGAC 59.770 54.545 0.00 0.00 46.90 3.67
185 186 4.448537 GTCAAGTGAGTGACTCATAGCT 57.551 45.455 19.31 8.46 42.73 3.32
186 187 4.172505 GTCAAGTGAGTGACTCATAGCTG 58.827 47.826 19.31 12.92 42.73 4.24
187 188 4.082125 TCAAGTGAGTGACTCATAGCTGA 58.918 43.478 19.31 14.82 42.73 4.26
188 189 4.524328 TCAAGTGAGTGACTCATAGCTGAA 59.476 41.667 19.31 1.02 42.73 3.02
189 190 4.717233 AGTGAGTGACTCATAGCTGAAG 57.283 45.455 19.31 0.00 42.73 3.02
190 191 3.119173 AGTGAGTGACTCATAGCTGAAGC 60.119 47.826 19.31 2.27 42.73 3.86
191 192 2.159324 TGAGTGACTCATAGCTGAAGCG 60.159 50.000 11.93 0.00 39.86 4.68
192 193 4.429673 TGAGTGACTCATAGCTGAAGCGA 61.430 47.826 11.93 0.00 39.86 4.93
193 194 6.447457 TGAGTGACTCATAGCTGAAGCGAC 62.447 50.000 11.93 0.00 39.86 5.19
200 201 2.666190 GCTGAAGCGACAGTGGCA 60.666 61.111 10.50 0.00 39.73 4.92
201 202 2.037136 GCTGAAGCGACAGTGGCAT 61.037 57.895 10.50 0.00 39.73 4.40
202 203 1.792301 CTGAAGCGACAGTGGCATG 59.208 57.895 10.50 0.00 33.73 4.06
203 204 1.642037 CTGAAGCGACAGTGGCATGG 61.642 60.000 10.50 0.00 33.73 3.66
204 205 3.044059 GAAGCGACAGTGGCATGGC 62.044 63.158 13.29 13.29 0.00 4.40
214 215 2.510906 GGCATGGCCTCGGTGTAT 59.489 61.111 8.35 0.00 46.69 2.29
215 216 1.598130 GGCATGGCCTCGGTGTATC 60.598 63.158 8.35 0.00 46.69 2.24
216 217 1.146041 GCATGGCCTCGGTGTATCA 59.854 57.895 3.32 0.00 0.00 2.15
217 218 0.463654 GCATGGCCTCGGTGTATCAA 60.464 55.000 3.32 0.00 0.00 2.57
218 219 1.299541 CATGGCCTCGGTGTATCAAC 58.700 55.000 3.32 0.00 0.00 3.18
219 220 1.134401 CATGGCCTCGGTGTATCAACT 60.134 52.381 3.32 0.00 0.00 3.16
220 221 0.249120 TGGCCTCGGTGTATCAACTG 59.751 55.000 3.32 0.00 0.00 3.16
221 222 0.535335 GGCCTCGGTGTATCAACTGA 59.465 55.000 0.00 0.00 34.30 3.41
222 223 1.139058 GGCCTCGGTGTATCAACTGAT 59.861 52.381 0.00 0.00 34.95 2.90
223 224 2.420129 GGCCTCGGTGTATCAACTGATT 60.420 50.000 0.00 0.00 34.95 2.57
224 225 2.866762 GCCTCGGTGTATCAACTGATTC 59.133 50.000 0.00 0.00 34.95 2.52
225 226 3.430929 GCCTCGGTGTATCAACTGATTCT 60.431 47.826 0.00 0.00 34.95 2.40
226 227 4.202121 GCCTCGGTGTATCAACTGATTCTA 60.202 45.833 0.00 0.00 34.95 2.10
227 228 5.524284 CCTCGGTGTATCAACTGATTCTAG 58.476 45.833 0.00 0.00 34.95 2.43
228 229 5.067936 CCTCGGTGTATCAACTGATTCTAGT 59.932 44.000 0.00 0.00 34.95 2.57
229 230 6.405953 CCTCGGTGTATCAACTGATTCTAGTT 60.406 42.308 0.00 0.00 41.37 2.24
230 231 6.931838 TCGGTGTATCAACTGATTCTAGTTT 58.068 36.000 0.00 0.00 38.78 2.66
231 232 7.033791 TCGGTGTATCAACTGATTCTAGTTTC 58.966 38.462 0.00 0.00 38.78 2.78
232 233 7.036220 CGGTGTATCAACTGATTCTAGTTTCT 58.964 38.462 0.00 0.00 38.78 2.52
233 234 7.545965 CGGTGTATCAACTGATTCTAGTTTCTT 59.454 37.037 0.00 0.00 38.78 2.52
234 235 9.220767 GGTGTATCAACTGATTCTAGTTTCTTT 57.779 33.333 0.00 0.00 38.78 2.52
280 281 3.266510 TGCATTCAGCTAATTCCTCGT 57.733 42.857 0.00 0.00 45.94 4.18
289 291 2.670229 GCTAATTCCTCGTGTCGTGTGA 60.670 50.000 0.00 0.00 0.00 3.58
293 295 1.080501 CCTCGTGTCGTGTGATGCT 60.081 57.895 0.00 0.00 0.00 3.79
298 300 2.058798 CGTGTCGTGTGATGCTAGTTT 58.941 47.619 0.00 0.00 0.00 2.66
299 301 2.159973 CGTGTCGTGTGATGCTAGTTTG 60.160 50.000 0.00 0.00 0.00 2.93
305 307 2.973224 GTGTGATGCTAGTTTGCAAACG 59.027 45.455 30.90 21.10 46.61 3.60
307 309 2.031157 GTGATGCTAGTTTGCAAACGGT 60.031 45.455 30.90 20.04 46.61 4.83
308 310 2.031245 TGATGCTAGTTTGCAAACGGTG 60.031 45.455 30.90 24.83 46.61 4.94
321 323 1.355971 AACGGTGCTGCAATACGTAG 58.644 50.000 22.34 5.91 36.69 3.51
333 335 3.244345 GCAATACGTAGAAGCAATGCGTA 59.756 43.478 0.08 8.17 43.56 4.42
353 355 6.130298 CGTAGCACAATTAAAATGGGATGA 57.870 37.500 0.00 0.00 0.00 2.92
354 356 6.738114 CGTAGCACAATTAAAATGGGATGAT 58.262 36.000 0.00 0.00 0.00 2.45
355 357 7.870826 CGTAGCACAATTAAAATGGGATGATA 58.129 34.615 0.00 0.00 0.00 2.15
356 358 8.349245 CGTAGCACAATTAAAATGGGATGATAA 58.651 33.333 0.00 0.00 0.00 1.75
381 383 8.789881 ATATATTCTGAACGAGAAGAAAGACG 57.210 34.615 0.00 0.00 44.14 4.18
385 387 2.124903 GAACGAGAAGAAAGACGCACA 58.875 47.619 0.00 0.00 0.00 4.57
390 392 4.748102 ACGAGAAGAAAGACGCACAATTTA 59.252 37.500 0.00 0.00 0.00 1.40
392 394 6.073222 ACGAGAAGAAAGACGCACAATTTATT 60.073 34.615 0.00 0.00 0.00 1.40
393 395 6.462949 CGAGAAGAAAGACGCACAATTTATTC 59.537 38.462 0.00 0.00 35.45 1.75
394 396 6.612306 AGAAGAAAGACGCACAATTTATTCC 58.388 36.000 0.00 0.00 35.69 3.01
395 397 6.431234 AGAAGAAAGACGCACAATTTATTCCT 59.569 34.615 0.00 0.00 35.69 3.36
396 398 6.575162 AGAAAGACGCACAATTTATTCCTT 57.425 33.333 0.00 0.00 0.00 3.36
397 399 6.612306 AGAAAGACGCACAATTTATTCCTTC 58.388 36.000 0.00 0.00 0.00 3.46
398 400 6.431234 AGAAAGACGCACAATTTATTCCTTCT 59.569 34.615 0.00 0.00 0.00 2.85
401 403 6.612306 AGACGCACAATTTATTCCTTCTTTC 58.388 36.000 0.00 0.00 0.00 2.62
407 409 9.481340 GCACAATTTATTCCTTCTTTCTCTTTT 57.519 29.630 0.00 0.00 0.00 2.27
414 416 7.986085 ATTCCTTCTTTCTCTTTTGATTCGA 57.014 32.000 0.00 0.00 0.00 3.71
422 424 5.215252 TCTCTTTTGATTCGAGGAACACT 57.785 39.130 0.00 0.00 0.00 3.55
423 425 5.230942 TCTCTTTTGATTCGAGGAACACTC 58.769 41.667 0.00 0.00 43.02 3.51
439 442 0.250124 ACTCGCCCACAAATCGTTCA 60.250 50.000 0.00 0.00 0.00 3.18
445 448 2.661195 GCCCACAAATCGTTCAAATTCG 59.339 45.455 0.00 0.00 0.00 3.34
449 452 5.060816 CCCACAAATCGTTCAAATTCGAATG 59.939 40.000 12.25 1.38 39.45 2.67
465 468 5.401033 TCGAATGCCAAAACAATTGTTTG 57.599 34.783 31.54 24.14 46.47 2.93
466 469 4.872691 TCGAATGCCAAAACAATTGTTTGT 59.127 33.333 31.54 20.23 46.47 2.83
467 470 6.042777 TCGAATGCCAAAACAATTGTTTGTA 58.957 32.000 31.54 21.34 46.47 2.41
468 471 6.019479 TCGAATGCCAAAACAATTGTTTGTAC 60.019 34.615 31.54 23.46 46.47 2.90
470 473 6.601741 ATGCCAAAACAATTGTTTGTACTG 57.398 33.333 31.54 24.98 46.47 2.74
471 474 5.482908 TGCCAAAACAATTGTTTGTACTGT 58.517 33.333 31.54 15.76 46.47 3.55
472 475 6.631016 TGCCAAAACAATTGTTTGTACTGTA 58.369 32.000 31.54 17.04 46.47 2.74
473 476 7.097192 TGCCAAAACAATTGTTTGTACTGTAA 58.903 30.769 31.54 15.63 46.47 2.41
474 477 7.766278 TGCCAAAACAATTGTTTGTACTGTAAT 59.234 29.630 31.54 13.81 46.47 1.89
475 478 9.250624 GCCAAAACAATTGTTTGTACTGTAATA 57.749 29.630 31.54 0.00 46.47 0.98
507 510 2.588027 TTTTGCCGGGAAACTGTTTC 57.412 45.000 21.81 21.92 38.94 2.78
508 511 1.770294 TTTGCCGGGAAACTGTTTCT 58.230 45.000 26.93 0.00 39.59 2.52
509 512 2.642154 TTGCCGGGAAACTGTTTCTA 57.358 45.000 26.93 10.48 39.59 2.10
510 513 2.178912 TGCCGGGAAACTGTTTCTAG 57.821 50.000 26.93 20.93 39.59 2.43
513 516 3.071312 TGCCGGGAAACTGTTTCTAGTTA 59.929 43.478 26.93 12.47 39.86 2.24
514 517 4.259356 GCCGGGAAACTGTTTCTAGTTAT 58.741 43.478 26.93 0.00 39.86 1.89
516 519 5.484715 CCGGGAAACTGTTTCTAGTTATCA 58.515 41.667 26.93 0.00 39.86 2.15
518 521 6.164176 CGGGAAACTGTTTCTAGTTATCAGT 58.836 40.000 26.93 0.00 39.86 3.41
521 524 7.764901 GGGAAACTGTTTCTAGTTATCAGTAGG 59.235 40.741 26.93 0.00 39.86 3.18
523 526 9.708092 GAAACTGTTTCTAGTTATCAGTAGGTT 57.292 33.333 22.55 0.00 39.86 3.50
594 630 3.569957 GCAAAGAGCGAACACGATC 57.430 52.632 0.00 0.00 41.74 3.69
627 677 1.128692 CAGGCCATTTCGTTTCGTCTC 59.871 52.381 5.01 0.00 0.00 3.36
628 678 0.446616 GGCCATTTCGTTTCGTCTCC 59.553 55.000 0.00 0.00 0.00 3.71
629 679 0.094730 GCCATTTCGTTTCGTCTCCG 59.905 55.000 0.00 0.00 0.00 4.63
630 680 0.719465 CCATTTCGTTTCGTCTCCGG 59.281 55.000 0.00 0.00 33.95 5.14
631 681 0.094730 CATTTCGTTTCGTCTCCGGC 59.905 55.000 0.00 0.00 33.95 6.13
632 682 1.017701 ATTTCGTTTCGTCTCCGGCC 61.018 55.000 0.00 0.00 33.95 6.13
633 683 2.091102 TTTCGTTTCGTCTCCGGCCT 62.091 55.000 0.00 0.00 33.95 5.19
634 684 2.048503 CGTTTCGTCTCCGGCCTT 60.049 61.111 0.00 0.00 33.95 4.35
635 685 2.092882 CGTTTCGTCTCCGGCCTTC 61.093 63.158 0.00 0.00 33.95 3.46
636 686 1.005394 GTTTCGTCTCCGGCCTTCA 60.005 57.895 0.00 0.00 33.95 3.02
637 687 1.014564 GTTTCGTCTCCGGCCTTCAG 61.015 60.000 0.00 0.00 33.95 3.02
638 688 1.469335 TTTCGTCTCCGGCCTTCAGT 61.469 55.000 0.00 0.00 33.95 3.41
639 689 2.125912 CGTCTCCGGCCTTCAGTG 60.126 66.667 0.00 0.00 0.00 3.66
640 690 2.932234 CGTCTCCGGCCTTCAGTGT 61.932 63.158 0.00 0.00 0.00 3.55
698 748 1.827969 ACTCCTCTTCGACCAATCAGG 59.172 52.381 0.00 0.00 45.67 3.86
867 925 1.757699 CCTCCCGAAAAACCAAAACCA 59.242 47.619 0.00 0.00 0.00 3.67
1220 1304 1.522355 GCTGCTCATCCGCAAGCTA 60.522 57.895 0.00 0.00 39.80 3.32
1463 1554 0.436150 TCGTCGTCTGTTAGTCGTCG 59.564 55.000 8.19 8.19 38.80 5.12
1492 1583 2.485426 CAGATGTGTTCAGCGGTGAAAT 59.515 45.455 29.77 20.21 44.44 2.17
1501 1594 1.008995 GCGGTGAAATTGTGCGTGT 60.009 52.632 0.00 0.00 0.00 4.49
1503 1596 1.833860 CGGTGAAATTGTGCGTGTTT 58.166 45.000 0.00 0.00 0.00 2.83
1538 1652 1.354031 TGCCATGGTGGATGTAGTGTT 59.646 47.619 14.67 0.00 40.96 3.32
1557 1671 3.196469 TGTTCCTGATCTGATGTCACCTC 59.804 47.826 0.38 0.00 0.00 3.85
1618 1733 3.006967 TCTGTTCTAAGACCTGTGCCTTC 59.993 47.826 0.00 0.00 0.00 3.46
1641 1756 8.939201 TTCTGATGCTTGTTTTTCATTGTTTA 57.061 26.923 0.00 0.00 0.00 2.01
1647 1762 6.985645 TGCTTGTTTTTCATTGTTTATGAGCT 59.014 30.769 0.00 0.00 43.87 4.09
1662 1777 3.713858 TGAGCTTGTTGTTGAATGTGG 57.286 42.857 0.00 0.00 0.00 4.17
1687 1802 5.076182 TCCTCAACTGGTGCATTTGATTAA 58.924 37.500 0.00 0.00 33.75 1.40
1695 1810 4.346418 TGGTGCATTTGATTAACCCAACTT 59.654 37.500 0.00 0.00 0.00 2.66
1707 1822 8.145122 TGATTAACCCAACTTGTGAAATTTACC 58.855 33.333 0.00 0.00 0.00 2.85
1709 1824 3.955551 ACCCAACTTGTGAAATTTACCGT 59.044 39.130 0.00 0.00 0.00 4.83
1715 1830 7.411274 CAACTTGTGAAATTTACCGTCAGTTA 58.589 34.615 0.00 0.00 0.00 2.24
1716 1831 7.739498 ACTTGTGAAATTTACCGTCAGTTAT 57.261 32.000 0.00 0.00 0.00 1.89
1718 1833 8.932791 ACTTGTGAAATTTACCGTCAGTTATAG 58.067 33.333 0.00 0.00 0.00 1.31
1723 1838 7.707893 TGAAATTTACCGTCAGTTATAGCTACC 59.292 37.037 0.00 0.00 0.00 3.18
1728 1843 2.033049 CGTCAGTTATAGCTACCGTGCT 59.967 50.000 0.00 0.00 46.11 4.40
1729 1844 3.372954 GTCAGTTATAGCTACCGTGCTG 58.627 50.000 0.00 1.14 43.87 4.41
1730 1845 3.021695 TCAGTTATAGCTACCGTGCTGT 58.978 45.455 0.00 1.85 43.87 4.40
1731 1846 4.036027 GTCAGTTATAGCTACCGTGCTGTA 59.964 45.833 0.00 1.00 43.87 2.74
1732 1847 4.641541 TCAGTTATAGCTACCGTGCTGTAA 59.358 41.667 0.00 6.33 43.87 2.41
1733 1848 5.301045 TCAGTTATAGCTACCGTGCTGTAAT 59.699 40.000 0.00 0.48 44.28 1.89
1734 1849 5.983720 CAGTTATAGCTACCGTGCTGTAATT 59.016 40.000 0.00 7.46 44.28 1.40
1735 1850 6.479001 CAGTTATAGCTACCGTGCTGTAATTT 59.521 38.462 0.00 4.90 44.28 1.82
1777 1892 5.787953 TTTTTGGTTGCATCTGAATCTGA 57.212 34.783 0.00 0.00 0.00 3.27
1778 1893 5.787953 TTTTGGTTGCATCTGAATCTGAA 57.212 34.783 0.00 0.00 0.00 3.02
1779 1894 4.771590 TTGGTTGCATCTGAATCTGAAC 57.228 40.909 0.00 0.00 0.00 3.18
1780 1895 2.743664 TGGTTGCATCTGAATCTGAACG 59.256 45.455 0.00 0.00 0.00 3.95
1781 1896 3.002791 GGTTGCATCTGAATCTGAACGA 58.997 45.455 0.00 0.00 0.00 3.85
1782 1897 3.436704 GGTTGCATCTGAATCTGAACGAA 59.563 43.478 0.00 0.00 0.00 3.85
1783 1898 4.095483 GGTTGCATCTGAATCTGAACGAAT 59.905 41.667 0.00 0.00 0.00 3.34
1784 1899 5.294306 GGTTGCATCTGAATCTGAACGAATA 59.706 40.000 0.00 0.00 0.00 1.75
1785 1900 6.183360 GGTTGCATCTGAATCTGAACGAATAA 60.183 38.462 0.00 0.00 0.00 1.40
1786 1901 6.349973 TGCATCTGAATCTGAACGAATAAC 57.650 37.500 0.00 0.00 0.00 1.89
1787 1902 5.294306 TGCATCTGAATCTGAACGAATAACC 59.706 40.000 0.00 0.00 0.00 2.85
1826 1941 7.178451 TCAGTTCTGTGTATCCATCTGTTCTAA 59.822 37.037 0.00 0.00 0.00 2.10
1828 1943 8.543774 AGTTCTGTGTATCCATCTGTTCTAATT 58.456 33.333 0.00 0.00 0.00 1.40
1832 1947 8.267620 TGTGTATCCATCTGTTCTAATTTGTG 57.732 34.615 0.00 0.00 0.00 3.33
1834 1949 8.391106 GTGTATCCATCTGTTCTAATTTGTGTC 58.609 37.037 0.00 0.00 0.00 3.67
1856 1972 6.154363 TGTCTCTGTTTTTCCTGTTTCCAATT 59.846 34.615 0.00 0.00 0.00 2.32
1859 1975 8.100164 TCTCTGTTTTTCCTGTTTCCAATTTTT 58.900 29.630 0.00 0.00 0.00 1.94
1861 1977 9.726438 TCTGTTTTTCCTGTTTCCAATTTTTAA 57.274 25.926 0.00 0.00 0.00 1.52
1871 1987 9.463443 CTGTTTCCAATTTTTAATTTCGACTCT 57.537 29.630 0.00 0.00 0.00 3.24
1880 1996 2.977405 ATTTCGACTCTTGCAACTGC 57.023 45.000 0.00 0.00 42.50 4.40
1884 2000 0.601046 CGACTCTTGCAACTGCTGGA 60.601 55.000 0.00 0.83 42.66 3.86
1888 2004 2.961062 ACTCTTGCAACTGCTGGAAAAT 59.039 40.909 0.00 0.00 42.66 1.82
1889 2005 3.243636 ACTCTTGCAACTGCTGGAAAATG 60.244 43.478 0.00 0.00 42.66 2.32
1914 2032 7.013750 TGACTCTTACTCAGATGTACCATGATC 59.986 40.741 0.00 0.00 0.00 2.92
1925 2043 4.827692 TGTACCATGATCACAACTACACC 58.172 43.478 0.00 0.00 0.00 4.16
1934 2052 9.330063 CATGATCACAACTACACCACTAAATAT 57.670 33.333 0.00 0.00 0.00 1.28
1962 2080 9.624373 ATGCAGATAGACAAAAGATGTTTCTAT 57.376 29.630 0.00 0.00 44.12 1.98
1970 2088 7.869429 AGACAAAAGATGTTTCTATTTTGCAGG 59.131 33.333 8.67 0.00 44.12 4.85
1971 2089 7.500141 ACAAAAGATGTTTCTATTTTGCAGGT 58.500 30.769 8.67 0.00 40.06 4.00
1973 2091 8.490355 CAAAAGATGTTTCTATTTTGCAGGTTC 58.510 33.333 0.00 0.00 28.28 3.62
1974 2092 6.899393 AGATGTTTCTATTTTGCAGGTTCA 57.101 33.333 0.00 0.00 0.00 3.18
1976 2094 8.579850 AGATGTTTCTATTTTGCAGGTTCATA 57.420 30.769 0.00 0.00 0.00 2.15
1977 2095 9.193806 AGATGTTTCTATTTTGCAGGTTCATAT 57.806 29.630 0.00 0.00 0.00 1.78
1978 2096 9.807649 GATGTTTCTATTTTGCAGGTTCATATT 57.192 29.630 0.00 0.00 0.00 1.28
2020 2144 3.766051 GGATTTCCTCACCTGCAAATTCT 59.234 43.478 0.00 0.00 0.00 2.40
2021 2145 4.381292 GGATTTCCTCACCTGCAAATTCTG 60.381 45.833 0.00 0.00 0.00 3.02
2085 2209 5.247110 AGGTGAAACTGCTAGATCAGAAAGA 59.753 40.000 4.57 0.00 37.51 2.52
2089 2213 9.155975 GTGAAACTGCTAGATCAGAAAGAAATA 57.844 33.333 4.57 0.00 37.51 1.40
2123 2247 7.979444 TGAGTAACTTTATGTTGGAAAGAGG 57.021 36.000 2.31 0.00 39.55 3.69
2128 2252 7.839680 AACTTTATGTTGGAAAGAGGTCATT 57.160 32.000 2.31 0.00 37.52 2.57
2130 2254 7.661040 ACTTTATGTTGGAAAGAGGTCATTTG 58.339 34.615 2.31 0.00 37.35 2.32
2193 2317 1.198637 CTTCGCTGCAGAGGAAAAAGG 59.801 52.381 20.43 4.41 0.00 3.11
2230 2354 6.980593 TGGTTTAATGAACTGAAGAACCATG 58.019 36.000 0.00 0.00 39.86 3.66
2255 2379 1.021202 CTAGCTGAGGAGGTGAGACG 58.979 60.000 0.00 0.00 0.00 4.18
2292 2416 6.092670 TGCAATAGAAATTCCTTCTCTGAACG 59.907 38.462 0.00 0.00 43.66 3.95
2312 2436 1.068541 GGTCGGACATGTTTTTGCTCC 60.069 52.381 10.76 0.00 0.00 4.70
2354 2478 7.288317 TCTGCATATAATTTTTGTTTTGGCG 57.712 32.000 0.00 0.00 0.00 5.69
2366 2490 7.555639 TTTTGTTTTGGCGTCTATTTTATCG 57.444 32.000 0.00 0.00 0.00 2.92
2399 2523 0.401395 ACCCAGGTCCAGGAAAGACA 60.401 55.000 0.82 0.00 35.89 3.41
2400 2524 0.326264 CCCAGGTCCAGGAAAGACAG 59.674 60.000 0.82 0.00 35.89 3.51
2403 2527 1.694150 CAGGTCCAGGAAAGACAGACA 59.306 52.381 0.00 0.00 35.89 3.41
2408 2532 3.045634 TCCAGGAAAGACAGACAAGGAA 58.954 45.455 0.00 0.00 0.00 3.36
2409 2533 3.458118 TCCAGGAAAGACAGACAAGGAAA 59.542 43.478 0.00 0.00 0.00 3.13
2410 2534 3.565902 CCAGGAAAGACAGACAAGGAAAC 59.434 47.826 0.00 0.00 0.00 2.78
2411 2535 8.812437 GTCCAGGAAAGACAGACAAGGAAACT 62.812 46.154 0.00 0.00 36.80 2.66
2412 2536 4.513318 CAGGAAAGACAGACAAGGAAACTC 59.487 45.833 0.00 0.00 42.68 3.01
2414 2538 5.104318 AGGAAAGACAGACAAGGAAACTCTT 60.104 40.000 0.00 0.00 42.68 2.85
2417 2541 5.476091 AGACAGACAAGGAAACTCTTAGG 57.524 43.478 0.00 0.00 42.68 2.69
2425 2549 8.166726 AGACAAGGAAACTCTTAGGAATTCAAT 58.833 33.333 7.93 0.00 42.68 2.57
2452 2576 7.665559 TCAAGGTACAGAATTAGCATTGAAACT 59.334 33.333 0.00 0.00 0.00 2.66
2516 2641 0.111310 GTTGCAAAACGAAATGGCGC 60.111 50.000 0.00 0.00 33.86 6.53
2529 2654 4.369182 GAAATGGCGCTGTATGTAGTAGT 58.631 43.478 7.64 0.00 0.00 2.73
2538 2663 4.800993 GCTGTATGTAGTAGTGCAGTTCTG 59.199 45.833 10.68 0.00 0.00 3.02
2543 2668 2.918712 AGTAGTGCAGTTCTGTGCTT 57.081 45.000 0.00 0.00 44.32 3.91
2586 2711 1.317613 TGTACCTTGTTGCTTGCCAG 58.682 50.000 0.00 0.00 0.00 4.85
2588 2713 2.162681 GTACCTTGTTGCTTGCCAGAT 58.837 47.619 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.159382 ACCTACGGCCACAATCTTTTG 58.841 47.619 2.24 0.00 38.86 2.44
11 12 2.579410 ACCTACGGCCACAATCTTTT 57.421 45.000 2.24 0.00 0.00 2.27
12 13 2.224670 TGAACCTACGGCCACAATCTTT 60.225 45.455 2.24 0.00 0.00 2.52
13 14 1.349688 TGAACCTACGGCCACAATCTT 59.650 47.619 2.24 0.00 0.00 2.40
14 15 0.981183 TGAACCTACGGCCACAATCT 59.019 50.000 2.24 0.00 0.00 2.40
15 16 1.066430 TCTGAACCTACGGCCACAATC 60.066 52.381 2.24 0.00 0.00 2.67
16 17 0.981183 TCTGAACCTACGGCCACAAT 59.019 50.000 2.24 0.00 0.00 2.71
17 18 0.034337 GTCTGAACCTACGGCCACAA 59.966 55.000 2.24 0.00 0.00 3.33
18 19 0.830444 AGTCTGAACCTACGGCCACA 60.830 55.000 2.24 0.00 0.00 4.17
19 20 0.320697 AAGTCTGAACCTACGGCCAC 59.679 55.000 2.24 0.00 0.00 5.01
20 21 0.320374 CAAGTCTGAACCTACGGCCA 59.680 55.000 2.24 0.00 0.00 5.36
21 22 0.391263 CCAAGTCTGAACCTACGGCC 60.391 60.000 0.00 0.00 0.00 6.13
22 23 1.019805 GCCAAGTCTGAACCTACGGC 61.020 60.000 0.00 0.00 0.00 5.68
23 24 0.320374 TGCCAAGTCTGAACCTACGG 59.680 55.000 0.00 0.00 0.00 4.02
24 25 1.714794 CTGCCAAGTCTGAACCTACG 58.285 55.000 0.00 0.00 0.00 3.51
25 26 1.270839 TGCTGCCAAGTCTGAACCTAC 60.271 52.381 0.00 0.00 0.00 3.18
26 27 1.055849 TGCTGCCAAGTCTGAACCTA 58.944 50.000 0.00 0.00 0.00 3.08
27 28 0.403271 ATGCTGCCAAGTCTGAACCT 59.597 50.000 0.00 0.00 0.00 3.50
28 29 0.807496 GATGCTGCCAAGTCTGAACC 59.193 55.000 0.00 0.00 0.00 3.62
29 30 1.467734 CAGATGCTGCCAAGTCTGAAC 59.532 52.381 12.93 0.00 40.30 3.18
30 31 1.348696 TCAGATGCTGCCAAGTCTGAA 59.651 47.619 16.43 5.96 42.81 3.02
31 32 0.978907 TCAGATGCTGCCAAGTCTGA 59.021 50.000 15.42 15.42 43.34 3.27
32 33 1.738350 CTTCAGATGCTGCCAAGTCTG 59.262 52.381 12.35 12.35 39.47 3.51
33 34 1.627329 TCTTCAGATGCTGCCAAGTCT 59.373 47.619 0.00 0.00 0.00 3.24
34 35 2.105006 TCTTCAGATGCTGCCAAGTC 57.895 50.000 0.00 0.00 0.00 3.01
35 36 2.366533 CATCTTCAGATGCTGCCAAGT 58.633 47.619 3.85 0.00 44.44 3.16
45 46 8.655935 AAAAAGTTACCAATCCATCTTCAGAT 57.344 30.769 0.00 0.00 34.56 2.90
67 68 2.840066 CGCTGGCCGGTCACAAAAA 61.840 57.895 14.55 0.00 0.00 1.94
68 69 3.283684 CGCTGGCCGGTCACAAAA 61.284 61.111 14.55 0.00 0.00 2.44
79 80 3.441011 ATACTACCGTGGCGCTGGC 62.441 63.158 7.64 0.00 38.90 4.85
80 81 1.299926 GATACTACCGTGGCGCTGG 60.300 63.158 7.64 10.00 0.00 4.85
81 82 0.032130 ATGATACTACCGTGGCGCTG 59.968 55.000 7.64 0.00 0.00 5.18
82 83 0.314302 GATGATACTACCGTGGCGCT 59.686 55.000 7.64 0.00 0.00 5.92
83 84 0.314302 AGATGATACTACCGTGGCGC 59.686 55.000 0.00 0.00 0.00 6.53
84 85 2.551032 TGTAGATGATACTACCGTGGCG 59.449 50.000 0.00 0.00 41.15 5.69
85 86 3.568853 ACTGTAGATGATACTACCGTGGC 59.431 47.826 0.00 0.00 41.15 5.01
86 87 5.560375 CGAACTGTAGATGATACTACCGTGG 60.560 48.000 0.00 0.00 39.45 4.94
87 88 5.441543 CGAACTGTAGATGATACTACCGTG 58.558 45.833 0.00 0.00 39.45 4.94
88 89 4.514441 CCGAACTGTAGATGATACTACCGT 59.486 45.833 0.00 0.00 40.55 4.83
89 90 4.083431 CCCGAACTGTAGATGATACTACCG 60.083 50.000 0.00 0.00 41.15 4.02
90 91 4.217983 CCCCGAACTGTAGATGATACTACC 59.782 50.000 0.00 0.00 41.15 3.18
91 92 4.826183 ACCCCGAACTGTAGATGATACTAC 59.174 45.833 0.00 0.00 41.90 2.73
92 93 5.057843 ACCCCGAACTGTAGATGATACTA 57.942 43.478 0.00 0.00 0.00 1.82
93 94 3.912248 ACCCCGAACTGTAGATGATACT 58.088 45.455 0.00 0.00 0.00 2.12
94 95 4.142004 ACAACCCCGAACTGTAGATGATAC 60.142 45.833 0.00 0.00 0.00 2.24
95 96 4.028131 ACAACCCCGAACTGTAGATGATA 58.972 43.478 0.00 0.00 0.00 2.15
96 97 2.838202 ACAACCCCGAACTGTAGATGAT 59.162 45.455 0.00 0.00 0.00 2.45
97 98 2.028476 CACAACCCCGAACTGTAGATGA 60.028 50.000 0.00 0.00 0.00 2.92
98 99 2.028476 TCACAACCCCGAACTGTAGATG 60.028 50.000 0.00 0.00 0.00 2.90
99 100 2.253610 TCACAACCCCGAACTGTAGAT 58.746 47.619 0.00 0.00 0.00 1.98
100 101 1.707106 TCACAACCCCGAACTGTAGA 58.293 50.000 0.00 0.00 0.00 2.59
101 102 2.762535 ATCACAACCCCGAACTGTAG 57.237 50.000 0.00 0.00 0.00 2.74
102 103 4.028131 AGATATCACAACCCCGAACTGTA 58.972 43.478 5.32 0.00 0.00 2.74
103 104 2.838202 AGATATCACAACCCCGAACTGT 59.162 45.455 5.32 0.00 0.00 3.55
104 105 3.543680 AGATATCACAACCCCGAACTG 57.456 47.619 5.32 0.00 0.00 3.16
105 106 4.261801 CAAAGATATCACAACCCCGAACT 58.738 43.478 5.32 0.00 0.00 3.01
106 107 3.377172 CCAAAGATATCACAACCCCGAAC 59.623 47.826 5.32 0.00 0.00 3.95
107 108 3.616219 CCAAAGATATCACAACCCCGAA 58.384 45.455 5.32 0.00 0.00 4.30
108 109 2.682563 GCCAAAGATATCACAACCCCGA 60.683 50.000 5.32 0.00 0.00 5.14
109 110 1.676006 GCCAAAGATATCACAACCCCG 59.324 52.381 5.32 0.00 0.00 5.73
110 111 2.427095 GTGCCAAAGATATCACAACCCC 59.573 50.000 5.32 0.00 0.00 4.95
111 112 3.088532 TGTGCCAAAGATATCACAACCC 58.911 45.455 5.32 0.00 36.62 4.11
112 113 4.989279 ATGTGCCAAAGATATCACAACC 57.011 40.909 5.32 0.00 41.92 3.77
113 114 6.158598 ACAAATGTGCCAAAGATATCACAAC 58.841 36.000 5.32 0.00 41.92 3.32
114 115 6.343716 ACAAATGTGCCAAAGATATCACAA 57.656 33.333 5.32 0.00 41.92 3.33
115 116 5.981088 ACAAATGTGCCAAAGATATCACA 57.019 34.783 5.32 0.17 42.66 3.58
116 117 7.092716 AGAAACAAATGTGCCAAAGATATCAC 58.907 34.615 5.32 0.00 0.00 3.06
117 118 7.230849 AGAAACAAATGTGCCAAAGATATCA 57.769 32.000 5.32 0.00 0.00 2.15
118 119 7.814107 TGAAGAAACAAATGTGCCAAAGATATC 59.186 33.333 0.00 0.00 0.00 1.63
119 120 7.669427 TGAAGAAACAAATGTGCCAAAGATAT 58.331 30.769 0.00 0.00 0.00 1.63
120 121 7.048629 TGAAGAAACAAATGTGCCAAAGATA 57.951 32.000 0.00 0.00 0.00 1.98
121 122 5.916318 TGAAGAAACAAATGTGCCAAAGAT 58.084 33.333 0.00 0.00 0.00 2.40
122 123 5.336150 TGAAGAAACAAATGTGCCAAAGA 57.664 34.783 0.00 0.00 0.00 2.52
123 124 6.258287 TGAATGAAGAAACAAATGTGCCAAAG 59.742 34.615 0.00 0.00 0.00 2.77
124 125 6.111382 TGAATGAAGAAACAAATGTGCCAAA 58.889 32.000 0.00 0.00 0.00 3.28
125 126 5.668471 TGAATGAAGAAACAAATGTGCCAA 58.332 33.333 0.00 0.00 0.00 4.52
126 127 5.273674 TGAATGAAGAAACAAATGTGCCA 57.726 34.783 0.00 0.00 0.00 4.92
127 128 4.687483 CCTGAATGAAGAAACAAATGTGCC 59.313 41.667 0.00 0.00 0.00 5.01
128 129 5.403466 GTCCTGAATGAAGAAACAAATGTGC 59.597 40.000 0.00 0.00 0.00 4.57
129 130 5.922544 GGTCCTGAATGAAGAAACAAATGTG 59.077 40.000 0.00 0.00 0.00 3.21
130 131 5.278463 CGGTCCTGAATGAAGAAACAAATGT 60.278 40.000 0.00 0.00 0.00 2.71
131 132 5.048782 TCGGTCCTGAATGAAGAAACAAATG 60.049 40.000 0.00 0.00 0.00 2.32
132 133 5.070001 TCGGTCCTGAATGAAGAAACAAAT 58.930 37.500 0.00 0.00 0.00 2.32
133 134 4.456535 TCGGTCCTGAATGAAGAAACAAA 58.543 39.130 0.00 0.00 0.00 2.83
134 135 4.065088 CTCGGTCCTGAATGAAGAAACAA 58.935 43.478 0.00 0.00 0.00 2.83
135 136 3.557054 CCTCGGTCCTGAATGAAGAAACA 60.557 47.826 0.00 0.00 0.00 2.83
136 137 3.003480 CCTCGGTCCTGAATGAAGAAAC 58.997 50.000 0.00 0.00 0.00 2.78
137 138 2.903784 TCCTCGGTCCTGAATGAAGAAA 59.096 45.455 0.00 0.00 0.00 2.52
138 139 2.497675 CTCCTCGGTCCTGAATGAAGAA 59.502 50.000 0.00 0.00 0.00 2.52
139 140 2.103373 CTCCTCGGTCCTGAATGAAGA 58.897 52.381 0.00 0.00 0.00 2.87
140 141 2.100584 CTCTCCTCGGTCCTGAATGAAG 59.899 54.545 0.00 0.00 0.00 3.02
141 142 2.103373 CTCTCCTCGGTCCTGAATGAA 58.897 52.381 0.00 0.00 0.00 2.57
142 143 1.686428 CCTCTCCTCGGTCCTGAATGA 60.686 57.143 0.00 0.00 0.00 2.57
143 144 0.749649 CCTCTCCTCGGTCCTGAATG 59.250 60.000 0.00 0.00 0.00 2.67
144 145 0.631753 TCCTCTCCTCGGTCCTGAAT 59.368 55.000 0.00 0.00 0.00 2.57
145 146 0.033991 CTCCTCTCCTCGGTCCTGAA 60.034 60.000 0.00 0.00 0.00 3.02
146 147 1.208844 ACTCCTCTCCTCGGTCCTGA 61.209 60.000 0.00 0.00 0.00 3.86
147 148 0.750182 GACTCCTCTCCTCGGTCCTG 60.750 65.000 0.00 0.00 0.00 3.86
148 149 1.208844 TGACTCCTCTCCTCGGTCCT 61.209 60.000 0.00 0.00 0.00 3.85
149 150 0.323542 TTGACTCCTCTCCTCGGTCC 60.324 60.000 0.00 0.00 0.00 4.46
150 151 1.099689 CTTGACTCCTCTCCTCGGTC 58.900 60.000 0.00 0.00 0.00 4.79
151 152 0.406361 ACTTGACTCCTCTCCTCGGT 59.594 55.000 0.00 0.00 0.00 4.69
152 153 0.814457 CACTTGACTCCTCTCCTCGG 59.186 60.000 0.00 0.00 0.00 4.63
153 154 1.742831 CTCACTTGACTCCTCTCCTCG 59.257 57.143 0.00 0.00 0.00 4.63
154 155 2.491693 CACTCACTTGACTCCTCTCCTC 59.508 54.545 0.00 0.00 0.00 3.71
155 156 2.109128 TCACTCACTTGACTCCTCTCCT 59.891 50.000 0.00 0.00 0.00 3.69
156 157 2.230266 GTCACTCACTTGACTCCTCTCC 59.770 54.545 0.00 0.00 42.36 3.71
157 158 3.569250 GTCACTCACTTGACTCCTCTC 57.431 52.381 0.00 0.00 42.36 3.20
164 165 4.082517 TCAGCTATGAGTCACTCACTTGAC 60.083 45.833 10.48 0.00 43.63 3.18
165 166 4.082125 TCAGCTATGAGTCACTCACTTGA 58.918 43.478 10.48 8.77 43.63 3.02
166 167 4.446994 TCAGCTATGAGTCACTCACTTG 57.553 45.455 10.48 6.50 43.63 3.16
167 168 4.620332 GCTTCAGCTATGAGTCACTCACTT 60.620 45.833 10.48 0.00 39.64 3.16
168 169 3.119173 GCTTCAGCTATGAGTCACTCACT 60.119 47.826 10.48 0.00 39.64 3.41
169 170 3.186119 GCTTCAGCTATGAGTCACTCAC 58.814 50.000 10.48 0.00 39.64 3.51
170 171 2.159324 CGCTTCAGCTATGAGTCACTCA 60.159 50.000 10.71 10.71 41.01 3.41
171 172 2.098280 TCGCTTCAGCTATGAGTCACTC 59.902 50.000 0.00 0.00 36.61 3.51
172 173 2.095461 TCGCTTCAGCTATGAGTCACT 58.905 47.619 0.00 0.00 36.61 3.41
173 174 2.189342 GTCGCTTCAGCTATGAGTCAC 58.811 52.381 0.00 0.00 36.61 3.67
174 175 1.818674 TGTCGCTTCAGCTATGAGTCA 59.181 47.619 0.00 0.00 36.61 3.41
175 176 2.159310 ACTGTCGCTTCAGCTATGAGTC 60.159 50.000 0.00 0.00 38.84 3.36
176 177 1.821753 ACTGTCGCTTCAGCTATGAGT 59.178 47.619 0.00 0.00 38.84 3.41
177 178 2.191802 CACTGTCGCTTCAGCTATGAG 58.808 52.381 0.00 0.00 38.84 2.90
178 179 1.134995 CCACTGTCGCTTCAGCTATGA 60.135 52.381 0.00 0.00 38.84 2.15
179 180 1.284657 CCACTGTCGCTTCAGCTATG 58.715 55.000 0.00 0.00 38.84 2.23
180 181 0.460987 GCCACTGTCGCTTCAGCTAT 60.461 55.000 0.00 0.00 38.84 2.97
181 182 1.079819 GCCACTGTCGCTTCAGCTA 60.080 57.895 0.00 0.00 38.84 3.32
182 183 2.358003 GCCACTGTCGCTTCAGCT 60.358 61.111 0.00 0.00 38.84 4.24
183 184 2.037136 ATGCCACTGTCGCTTCAGC 61.037 57.895 0.00 0.00 38.84 4.26
184 185 1.642037 CCATGCCACTGTCGCTTCAG 61.642 60.000 0.00 3.95 40.80 3.02
185 186 1.672030 CCATGCCACTGTCGCTTCA 60.672 57.895 0.00 0.00 0.00 3.02
186 187 3.044059 GCCATGCCACTGTCGCTTC 62.044 63.158 0.00 0.00 0.00 3.86
187 188 3.058160 GCCATGCCACTGTCGCTT 61.058 61.111 0.00 0.00 0.00 4.68
198 199 0.463654 TTGATACACCGAGGCCATGC 60.464 55.000 5.01 0.00 0.00 4.06
199 200 1.134401 AGTTGATACACCGAGGCCATG 60.134 52.381 5.01 0.00 0.00 3.66
200 201 1.134401 CAGTTGATACACCGAGGCCAT 60.134 52.381 5.01 0.00 0.00 4.40
201 202 0.249120 CAGTTGATACACCGAGGCCA 59.751 55.000 5.01 0.00 0.00 5.36
202 203 0.535335 TCAGTTGATACACCGAGGCC 59.465 55.000 0.00 0.00 0.00 5.19
203 204 2.604046 ATCAGTTGATACACCGAGGC 57.396 50.000 0.00 0.00 32.01 4.70
204 205 4.392921 AGAATCAGTTGATACACCGAGG 57.607 45.455 0.00 0.00 33.73 4.63
205 206 6.137794 ACTAGAATCAGTTGATACACCGAG 57.862 41.667 0.00 0.00 33.73 4.63
206 207 6.525578 AACTAGAATCAGTTGATACACCGA 57.474 37.500 0.00 0.00 37.37 4.69
207 208 7.036220 AGAAACTAGAATCAGTTGATACACCG 58.964 38.462 0.00 0.00 38.74 4.94
208 209 8.779354 AAGAAACTAGAATCAGTTGATACACC 57.221 34.615 0.00 0.00 38.74 4.16
250 251 9.971922 GGAATTAGCTGAATGCAAAAACTATAT 57.028 29.630 0.00 0.00 45.94 0.86
251 252 9.189156 AGGAATTAGCTGAATGCAAAAACTATA 57.811 29.630 0.00 0.00 45.94 1.31
252 253 8.071177 AGGAATTAGCTGAATGCAAAAACTAT 57.929 30.769 0.00 0.00 45.94 2.12
253 254 7.466746 AGGAATTAGCTGAATGCAAAAACTA 57.533 32.000 0.00 0.00 45.94 2.24
254 255 6.350629 AGGAATTAGCTGAATGCAAAAACT 57.649 33.333 0.00 0.00 45.94 2.66
255 256 5.287035 CGAGGAATTAGCTGAATGCAAAAAC 59.713 40.000 0.00 0.00 45.94 2.43
256 257 5.048083 ACGAGGAATTAGCTGAATGCAAAAA 60.048 36.000 0.00 0.00 45.94 1.94
257 258 4.458989 ACGAGGAATTAGCTGAATGCAAAA 59.541 37.500 0.00 0.00 45.94 2.44
263 264 3.119101 ACGACACGAGGAATTAGCTGAAT 60.119 43.478 0.00 0.00 0.00 2.57
280 281 1.798223 GCAAACTAGCATCACACGACA 59.202 47.619 0.00 0.00 0.00 4.35
289 291 2.704725 CACCGTTTGCAAACTAGCAT 57.295 45.000 33.03 15.29 45.19 3.79
305 307 1.327764 GCTTCTACGTATTGCAGCACC 59.672 52.381 0.00 0.00 0.00 5.01
307 309 2.378445 TGCTTCTACGTATTGCAGCA 57.622 45.000 11.84 11.84 34.92 4.41
308 310 3.611517 CATTGCTTCTACGTATTGCAGC 58.388 45.455 13.97 11.04 35.02 5.25
309 311 3.611517 GCATTGCTTCTACGTATTGCAG 58.388 45.455 13.97 7.82 35.02 4.41
310 312 2.030335 CGCATTGCTTCTACGTATTGCA 59.970 45.455 7.12 11.49 0.00 4.08
311 313 2.030457 ACGCATTGCTTCTACGTATTGC 59.970 45.455 7.12 1.68 34.79 3.56
321 323 2.549633 ATTGTGCTACGCATTGCTTC 57.450 45.000 7.12 0.00 41.91 3.86
346 348 9.255029 TCTCGTTCAGAATATATTATCATCCCA 57.745 33.333 0.00 0.00 0.00 4.37
355 357 9.239002 CGTCTTTCTTCTCGTTCAGAATATATT 57.761 33.333 0.00 0.00 40.55 1.28
356 358 7.380065 GCGTCTTTCTTCTCGTTCAGAATATAT 59.620 37.037 0.00 0.00 40.55 0.86
357 359 6.691818 GCGTCTTTCTTCTCGTTCAGAATATA 59.308 38.462 0.00 0.00 40.55 0.86
358 360 5.517054 GCGTCTTTCTTCTCGTTCAGAATAT 59.483 40.000 0.00 0.00 40.55 1.28
359 361 4.857588 GCGTCTTTCTTCTCGTTCAGAATA 59.142 41.667 0.00 0.00 40.55 1.75
368 370 3.795561 AATTGTGCGTCTTTCTTCTCG 57.204 42.857 0.00 0.00 0.00 4.04
381 383 9.481340 AAAAGAGAAAGAAGGAATAAATTGTGC 57.519 29.630 0.00 0.00 0.00 4.57
390 392 7.120432 CCTCGAATCAAAAGAGAAAGAAGGAAT 59.880 37.037 0.00 0.00 34.13 3.01
392 394 5.934625 CCTCGAATCAAAAGAGAAAGAAGGA 59.065 40.000 0.00 0.00 34.13 3.36
393 395 5.934625 TCCTCGAATCAAAAGAGAAAGAAGG 59.065 40.000 0.00 0.00 34.13 3.46
394 396 7.041780 TGTTCCTCGAATCAAAAGAGAAAGAAG 60.042 37.037 0.00 0.00 34.13 2.85
395 397 6.765989 TGTTCCTCGAATCAAAAGAGAAAGAA 59.234 34.615 0.00 0.00 34.13 2.52
396 398 6.202954 GTGTTCCTCGAATCAAAAGAGAAAGA 59.797 38.462 0.00 0.00 34.13 2.52
397 399 6.203723 AGTGTTCCTCGAATCAAAAGAGAAAG 59.796 38.462 0.00 0.00 34.13 2.62
398 400 6.055588 AGTGTTCCTCGAATCAAAAGAGAAA 58.944 36.000 0.00 0.00 34.13 2.52
401 403 5.523013 GAGTGTTCCTCGAATCAAAAGAG 57.477 43.478 0.00 0.00 0.00 2.85
414 416 0.110486 ATTTGTGGGCGAGTGTTCCT 59.890 50.000 0.00 0.00 0.00 3.36
422 424 1.309950 TTTGAACGATTTGTGGGCGA 58.690 45.000 0.00 0.00 0.00 5.54
423 425 2.346099 ATTTGAACGATTTGTGGGCG 57.654 45.000 0.00 0.00 0.00 6.13
439 442 6.616774 ACAATTGTTTTGGCATTCGAATTT 57.383 29.167 8.21 0.00 0.00 1.82
490 493 2.158726 ACTAGAAACAGTTTCCCGGCAA 60.159 45.455 20.47 0.00 40.54 4.52
523 526 0.321996 GCGGGGTGCCCAAATAAAAA 59.678 50.000 9.76 0.00 45.83 1.94
524 527 0.832135 TGCGGGGTGCCCAAATAAAA 60.832 50.000 9.76 0.00 45.83 1.52
525 528 0.832135 TTGCGGGGTGCCCAAATAAA 60.832 50.000 9.76 0.00 45.83 1.40
526 529 0.832135 TTTGCGGGGTGCCCAAATAA 60.832 50.000 9.76 0.00 45.83 1.40
527 530 0.832135 TTTTGCGGGGTGCCCAAATA 60.832 50.000 9.76 0.00 45.83 1.40
528 531 1.700042 TTTTTGCGGGGTGCCCAAAT 61.700 50.000 9.76 0.00 45.83 2.32
529 532 2.367202 TTTTTGCGGGGTGCCCAAA 61.367 52.632 9.76 0.00 45.83 3.28
530 533 2.764128 TTTTTGCGGGGTGCCCAA 60.764 55.556 9.76 0.00 45.83 4.12
559 595 3.679738 CCGCCAACACGCCCAAAT 61.680 61.111 0.00 0.00 0.00 2.32
587 623 3.701604 GAGAAGGGCGCGATCGTGT 62.702 63.158 27.68 9.82 38.14 4.49
627 677 3.357079 GTGCACACTGAAGGCCGG 61.357 66.667 13.17 0.00 0.00 6.13
628 678 3.716006 CGTGCACACTGAAGGCCG 61.716 66.667 18.64 0.00 0.00 6.13
629 679 4.030452 GCGTGCACACTGAAGGCC 62.030 66.667 18.64 0.00 0.00 5.19
630 680 2.335052 TTTGCGTGCACACTGAAGGC 62.335 55.000 18.64 10.61 0.00 4.35
631 681 0.100325 TTTTGCGTGCACACTGAAGG 59.900 50.000 18.64 0.00 0.00 3.46
632 682 2.046313 GATTTTGCGTGCACACTGAAG 58.954 47.619 18.64 0.00 0.00 3.02
633 683 1.403323 TGATTTTGCGTGCACACTGAA 59.597 42.857 18.64 6.78 0.00 3.02
634 684 1.002576 CTGATTTTGCGTGCACACTGA 60.003 47.619 18.64 0.00 0.00 3.41
635 685 1.268692 ACTGATTTTGCGTGCACACTG 60.269 47.619 18.64 1.23 0.00 3.66
636 686 1.024271 ACTGATTTTGCGTGCACACT 58.976 45.000 18.64 0.00 0.00 3.55
637 687 1.122849 CACTGATTTTGCGTGCACAC 58.877 50.000 18.64 7.98 0.00 3.82
638 688 0.030504 CCACTGATTTTGCGTGCACA 59.969 50.000 18.64 0.00 0.00 4.57
639 689 1.277495 GCCACTGATTTTGCGTGCAC 61.277 55.000 6.82 6.82 0.00 4.57
640 690 1.007502 GCCACTGATTTTGCGTGCA 60.008 52.632 0.00 0.00 0.00 4.57
727 777 0.614979 TTGAAGAGGAGTCCGAGGGG 60.615 60.000 2.76 0.00 0.00 4.79
1031 1115 2.571757 CTCGCCGTCTGCTTGGTA 59.428 61.111 0.00 0.00 38.05 3.25
1463 1554 2.675348 GCTGAACACATCTGGCTAAGAC 59.325 50.000 0.00 0.00 37.88 3.01
1492 1583 2.350192 CAGACACTACAAACACGCACAA 59.650 45.455 0.00 0.00 0.00 3.33
1501 1594 2.206750 GGCACGAACAGACACTACAAA 58.793 47.619 0.00 0.00 0.00 2.83
1503 1596 0.747852 TGGCACGAACAGACACTACA 59.252 50.000 0.00 0.00 0.00 2.74
1538 1652 2.023598 AGGAGGTGACATCAGATCAGGA 60.024 50.000 0.00 0.00 0.00 3.86
1557 1671 3.930336 TCAGTTACTGATGACAGCAAGG 58.070 45.455 11.42 0.00 46.95 3.61
1591 1706 5.479306 GCACAGGTCTTAGAACAGATAACA 58.521 41.667 0.00 0.00 0.00 2.41
1593 1708 4.777896 AGGCACAGGTCTTAGAACAGATAA 59.222 41.667 0.00 0.00 0.00 1.75
1608 1723 0.809385 CAAGCATCAGAAGGCACAGG 59.191 55.000 0.76 0.00 33.71 4.00
1618 1733 8.980610 TCATAAACAATGAAAAACAAGCATCAG 58.019 29.630 0.00 0.00 41.75 2.90
1641 1756 3.638160 ACCACATTCAACAACAAGCTCAT 59.362 39.130 0.00 0.00 0.00 2.90
1647 1762 4.019858 TGAGGAACCACATTCAACAACAA 58.980 39.130 0.00 0.00 39.30 2.83
1662 1777 2.622942 TCAAATGCACCAGTTGAGGAAC 59.377 45.455 4.24 0.00 42.20 3.62
1687 1802 3.955551 ACGGTAAATTTCACAAGTTGGGT 59.044 39.130 4.74 0.00 0.00 4.51
1695 1810 7.101054 AGCTATAACTGACGGTAAATTTCACA 58.899 34.615 0.00 0.00 0.00 3.58
1705 1820 2.357009 CACGGTAGCTATAACTGACGGT 59.643 50.000 0.00 0.00 0.00 4.83
1707 1822 2.033049 AGCACGGTAGCTATAACTGACG 59.967 50.000 0.00 0.00 44.50 4.35
1709 1824 3.021695 ACAGCACGGTAGCTATAACTGA 58.978 45.455 14.98 0.00 44.54 3.41
1715 1830 4.049186 CGAAATTACAGCACGGTAGCTAT 58.951 43.478 0.00 0.00 44.54 2.97
1716 1831 3.441163 CGAAATTACAGCACGGTAGCTA 58.559 45.455 5.07 0.00 44.54 3.32
1718 1833 1.267383 GCGAAATTACAGCACGGTAGC 60.267 52.381 0.00 0.00 0.00 3.58
1723 1838 2.840176 GTGATTGCGAAATTACAGCACG 59.160 45.455 6.17 0.00 40.92 5.34
1728 1843 8.942338 AGATTACTAGTGATTGCGAAATTACA 57.058 30.769 13.13 0.00 0.00 2.41
1759 1874 2.743664 CGTTCAGATTCAGATGCAACCA 59.256 45.455 0.00 0.00 0.00 3.67
1776 1891 2.344025 ACGAGCCAAGGTTATTCGTTC 58.656 47.619 0.00 0.00 41.19 3.95
1777 1892 2.344025 GACGAGCCAAGGTTATTCGTT 58.656 47.619 0.00 0.00 43.65 3.85
1778 1893 1.405121 GGACGAGCCAAGGTTATTCGT 60.405 52.381 8.85 8.85 45.95 3.85
1779 1894 1.134788 AGGACGAGCCAAGGTTATTCG 60.135 52.381 0.00 0.00 40.02 3.34
1780 1895 2.693267 AGGACGAGCCAAGGTTATTC 57.307 50.000 0.00 0.00 40.02 1.75
1781 1896 2.304761 TGAAGGACGAGCCAAGGTTATT 59.695 45.455 0.00 0.00 40.02 1.40
1782 1897 1.906574 TGAAGGACGAGCCAAGGTTAT 59.093 47.619 0.00 0.00 40.02 1.89
1783 1898 1.275291 CTGAAGGACGAGCCAAGGTTA 59.725 52.381 0.00 0.00 40.02 2.85
1784 1899 0.035458 CTGAAGGACGAGCCAAGGTT 59.965 55.000 0.00 0.00 40.02 3.50
1785 1900 1.122019 ACTGAAGGACGAGCCAAGGT 61.122 55.000 0.00 0.00 40.02 3.50
1786 1901 0.035458 AACTGAAGGACGAGCCAAGG 59.965 55.000 0.00 0.00 40.02 3.61
1787 1902 1.001406 AGAACTGAAGGACGAGCCAAG 59.999 52.381 0.00 0.00 40.02 3.61
1826 1941 6.530019 AACAGGAAAAACAGAGACACAAAT 57.470 33.333 0.00 0.00 0.00 2.32
1828 1943 5.105917 GGAAACAGGAAAAACAGAGACACAA 60.106 40.000 0.00 0.00 0.00 3.33
1832 1947 5.576447 TTGGAAACAGGAAAAACAGAGAC 57.424 39.130 0.00 0.00 44.54 3.36
1834 1949 7.848223 AAAATTGGAAACAGGAAAAACAGAG 57.152 32.000 0.00 0.00 44.54 3.35
1856 1972 5.685511 GCAGTTGCAAGAGTCGAAATTAAAA 59.314 36.000 0.00 0.00 41.59 1.52
1859 1975 4.065088 AGCAGTTGCAAGAGTCGAAATTA 58.935 39.130 0.00 0.00 45.16 1.40
1861 1977 2.225019 CAGCAGTTGCAAGAGTCGAAAT 59.775 45.455 0.00 0.00 45.16 2.17
1871 1987 2.694628 AGTCATTTTCCAGCAGTTGCAA 59.305 40.909 6.90 0.00 45.16 4.08
1880 1996 7.102346 ACATCTGAGTAAGAGTCATTTTCCAG 58.898 38.462 0.00 0.00 38.67 3.86
1884 2000 7.907389 TGGTACATCTGAGTAAGAGTCATTTT 58.093 34.615 0.00 0.00 38.67 1.82
1914 2032 7.065683 TGCATCATATTTAGTGGTGTAGTTGTG 59.934 37.037 0.00 0.00 30.39 3.33
1934 2052 7.609146 AGAAACATCTTTTGTCTATCTGCATCA 59.391 33.333 0.00 0.00 37.68 3.07
1962 2080 7.768120 AGAACAAACAAATATGAACCTGCAAAA 59.232 29.630 0.00 0.00 0.00 2.44
1964 2082 6.815089 AGAACAAACAAATATGAACCTGCAA 58.185 32.000 0.00 0.00 0.00 4.08
1966 2084 8.243426 TCATAGAACAAACAAATATGAACCTGC 58.757 33.333 0.00 0.00 31.67 4.85
1973 2091 9.603298 CCATCGATCATAGAACAAACAAATATG 57.397 33.333 0.00 0.00 0.00 1.78
1974 2092 9.559732 TCCATCGATCATAGAACAAACAAATAT 57.440 29.630 0.00 0.00 0.00 1.28
1976 2094 7.864108 TCCATCGATCATAGAACAAACAAAT 57.136 32.000 0.00 0.00 0.00 2.32
1977 2095 7.864108 ATCCATCGATCATAGAACAAACAAA 57.136 32.000 0.00 0.00 0.00 2.83
1978 2096 7.864108 AATCCATCGATCATAGAACAAACAA 57.136 32.000 0.00 0.00 0.00 2.83
2020 2144 4.202357 ACTTTCTACCTCAATCACACTGCA 60.202 41.667 0.00 0.00 0.00 4.41
2021 2145 4.153117 CACTTTCTACCTCAATCACACTGC 59.847 45.833 0.00 0.00 0.00 4.40
2049 2173 3.820467 CAGTTTCACCTGTGCCATCTTTA 59.180 43.478 0.00 0.00 0.00 1.85
2059 2183 3.834813 TCTGATCTAGCAGTTTCACCTGT 59.165 43.478 0.00 0.00 37.20 4.00
2063 2187 7.426929 TTTCTTTCTGATCTAGCAGTTTCAC 57.573 36.000 0.00 0.00 37.20 3.18
2095 2219 8.836413 TCTTTCCAACATAAAGTTACTCAACAG 58.164 33.333 0.00 0.00 38.74 3.16
2123 2247 9.912634 TTCTACATTCCTTTTTCATCAAATGAC 57.087 29.630 0.00 0.00 39.39 3.06
2128 2252 8.463930 ACTGTTCTACATTCCTTTTTCATCAA 57.536 30.769 0.00 0.00 0.00 2.57
2130 2254 8.329203 AGACTGTTCTACATTCCTTTTTCATC 57.671 34.615 0.00 0.00 29.13 2.92
2272 2396 5.621555 CGACCGTTCAGAGAAGGAATTTCTA 60.622 44.000 0.00 0.00 46.12 2.10
2292 2416 1.068541 GGAGCAAAAACATGTCCGACC 60.069 52.381 0.00 0.00 0.00 4.79
2312 2436 6.748333 TGCAGATGGATCTTAAGAAAAGTG 57.252 37.500 9.71 4.21 34.22 3.16
2344 2468 6.243811 ACGATAAAATAGACGCCAAAACAA 57.756 33.333 0.00 0.00 0.00 2.83
2345 2469 5.866335 ACGATAAAATAGACGCCAAAACA 57.134 34.783 0.00 0.00 0.00 2.83
2366 2490 6.181908 TGGACCTGGGTACATGTAAATAAAC 58.818 40.000 7.25 0.00 33.38 2.01
2399 2523 7.079451 TGAATTCCTAAGAGTTTCCTTGTCT 57.921 36.000 2.27 0.00 0.00 3.41
2400 2524 7.745620 TTGAATTCCTAAGAGTTTCCTTGTC 57.254 36.000 2.27 0.00 0.00 3.18
2403 2527 8.940397 TGAATTGAATTCCTAAGAGTTTCCTT 57.060 30.769 14.73 0.00 38.50 3.36
2408 2532 9.232473 GTACCTTGAATTGAATTCCTAAGAGTT 57.768 33.333 14.73 4.51 38.50 3.01
2409 2533 8.383175 TGTACCTTGAATTGAATTCCTAAGAGT 58.617 33.333 14.73 13.15 38.50 3.24
2410 2534 8.792830 TGTACCTTGAATTGAATTCCTAAGAG 57.207 34.615 14.73 9.14 38.50 2.85
2411 2535 8.602424 TCTGTACCTTGAATTGAATTCCTAAGA 58.398 33.333 14.73 6.10 38.50 2.10
2412 2536 8.792830 TCTGTACCTTGAATTGAATTCCTAAG 57.207 34.615 14.73 11.89 38.50 2.18
2414 2538 9.753674 AATTCTGTACCTTGAATTGAATTCCTA 57.246 29.630 14.73 3.07 40.20 2.94
2417 2541 9.508567 GCTAATTCTGTACCTTGAATTGAATTC 57.491 33.333 19.70 10.85 41.31 2.17
2425 2549 7.994425 TTCAATGCTAATTCTGTACCTTGAA 57.006 32.000 0.00 0.00 0.00 2.69
2475 2599 9.534565 GCAACTACAATACTGAAATGAGAGATA 57.465 33.333 0.00 0.00 0.00 1.98
2479 2603 7.977789 TTGCAACTACAATACTGAAATGAGA 57.022 32.000 0.00 0.00 0.00 3.27
2492 2617 3.799420 GCCATTTCGTTTTGCAACTACAA 59.201 39.130 0.00 0.00 0.00 2.41
2495 2620 2.656085 CGCCATTTCGTTTTGCAACTA 58.344 42.857 0.00 0.00 0.00 2.24
2499 2624 0.938637 CAGCGCCATTTCGTTTTGCA 60.939 50.000 2.29 0.00 0.00 4.08
2516 2641 5.802451 CACAGAACTGCACTACTACATACAG 59.198 44.000 1.46 0.00 0.00 2.74
2529 2654 2.930950 ACCTTAAAGCACAGAACTGCA 58.069 42.857 1.46 0.00 39.86 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.