Multiple sequence alignment - TraesCS1A01G354900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G354900 chr1A 100.000 2408 0 0 1 2408 537820302 537822709 0.000000e+00 4447.0
1 TraesCS1A01G354900 chr1A 81.606 772 80 34 643 1396 539279879 539279152 1.240000e-162 582.0
2 TraesCS1A01G354900 chr1D 87.765 2125 119 59 322 2408 440050011 440047990 0.000000e+00 2353.0
3 TraesCS1A01G354900 chr1D 81.169 770 74 37 643 1396 439510915 439511629 9.730000e-154 553.0
4 TraesCS1A01G354900 chr1D 83.360 619 55 26 740 1351 439557137 439557714 1.640000e-146 529.0
5 TraesCS1A01G354900 chr1B 87.537 1027 66 35 577 1585 597558593 597557611 0.000000e+00 1131.0
6 TraesCS1A01G354900 chr1B 81.267 726 71 38 643 1351 596316213 596316890 5.900000e-146 527.0
7 TraesCS1A01G354900 chr4D 100.000 34 0 0 1069 1102 380295539 380295572 2.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G354900 chr1A 537820302 537822709 2407 False 4447 4447 100.000 1 2408 1 chr1A.!!$F1 2407
1 TraesCS1A01G354900 chr1A 539279152 539279879 727 True 582 582 81.606 643 1396 1 chr1A.!!$R1 753
2 TraesCS1A01G354900 chr1D 440047990 440050011 2021 True 2353 2353 87.765 322 2408 1 chr1D.!!$R1 2086
3 TraesCS1A01G354900 chr1D 439510915 439511629 714 False 553 553 81.169 643 1396 1 chr1D.!!$F1 753
4 TraesCS1A01G354900 chr1D 439557137 439557714 577 False 529 529 83.360 740 1351 1 chr1D.!!$F2 611
5 TraesCS1A01G354900 chr1B 597557611 597558593 982 True 1131 1131 87.537 577 1585 1 chr1B.!!$R1 1008
6 TraesCS1A01G354900 chr1B 596316213 596316890 677 False 527 527 81.267 643 1351 1 chr1B.!!$F1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.033504 GCTAGCTACTATGGCGCCAA 59.966 55.0 36.33 21.23 34.52 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 1655 0.033504 AGTTCCAGTGTAGTGTGCGG 59.966 55.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.943909 ATTTTATCCGTCTAGTTCGAGAAAAT 57.056 30.769 10.52 11.15 0.00 1.82
28 29 8.767478 TTTTATCCGTCTAGTTCGAGAAAATT 57.233 30.769 10.52 0.00 0.00 1.82
29 30 7.751047 TTATCCGTCTAGTTCGAGAAAATTG 57.249 36.000 10.52 0.00 0.00 2.32
30 31 3.924686 TCCGTCTAGTTCGAGAAAATTGC 59.075 43.478 10.52 0.00 0.00 3.56
31 32 3.927142 CCGTCTAGTTCGAGAAAATTGCT 59.073 43.478 10.52 0.00 0.00 3.91
32 33 4.031878 CCGTCTAGTTCGAGAAAATTGCTC 59.968 45.833 10.52 0.00 0.00 4.26
33 34 4.621460 CGTCTAGTTCGAGAAAATTGCTCA 59.379 41.667 1.42 0.00 32.67 4.26
34 35 5.289675 CGTCTAGTTCGAGAAAATTGCTCAT 59.710 40.000 1.42 0.00 32.67 2.90
35 36 6.473521 GTCTAGTTCGAGAAAATTGCTCATG 58.526 40.000 1.42 0.00 32.67 3.07
36 37 6.091441 GTCTAGTTCGAGAAAATTGCTCATGT 59.909 38.462 1.42 0.00 32.67 3.21
37 38 7.275779 GTCTAGTTCGAGAAAATTGCTCATGTA 59.724 37.037 1.42 0.00 32.67 2.29
38 39 6.992063 AGTTCGAGAAAATTGCTCATGTAT 57.008 33.333 1.42 0.00 32.67 2.29
39 40 7.009568 AGTTCGAGAAAATTGCTCATGTATC 57.990 36.000 1.42 0.00 32.67 2.24
40 41 5.991328 TCGAGAAAATTGCTCATGTATCC 57.009 39.130 1.42 0.00 32.67 2.59
41 42 5.427378 TCGAGAAAATTGCTCATGTATCCA 58.573 37.500 1.42 0.00 32.67 3.41
42 43 5.879777 TCGAGAAAATTGCTCATGTATCCAA 59.120 36.000 1.42 0.00 32.67 3.53
43 44 6.037500 TCGAGAAAATTGCTCATGTATCCAAG 59.962 38.462 1.42 0.00 32.67 3.61
44 45 6.183360 CGAGAAAATTGCTCATGTATCCAAGT 60.183 38.462 1.42 0.00 32.67 3.16
45 46 7.472334 AGAAAATTGCTCATGTATCCAAGTT 57.528 32.000 0.00 0.00 0.00 2.66
46 47 8.579850 AGAAAATTGCTCATGTATCCAAGTTA 57.420 30.769 0.00 0.00 0.00 2.24
47 48 9.023962 AGAAAATTGCTCATGTATCCAAGTTAA 57.976 29.630 0.00 0.00 0.00 2.01
48 49 9.638239 GAAAATTGCTCATGTATCCAAGTTAAA 57.362 29.630 0.00 0.00 0.00 1.52
49 50 9.643693 AAAATTGCTCATGTATCCAAGTTAAAG 57.356 29.630 0.00 0.00 0.00 1.85
50 51 6.757897 TTGCTCATGTATCCAAGTTAAAGG 57.242 37.500 0.00 0.00 0.00 3.11
51 52 5.815581 TGCTCATGTATCCAAGTTAAAGGT 58.184 37.500 0.00 0.00 0.00 3.50
52 53 6.953101 TGCTCATGTATCCAAGTTAAAGGTA 58.047 36.000 0.00 0.00 0.00 3.08
53 54 6.821665 TGCTCATGTATCCAAGTTAAAGGTAC 59.178 38.462 0.00 0.00 0.00 3.34
54 55 6.018994 GCTCATGTATCCAAGTTAAAGGTACG 60.019 42.308 0.00 0.00 0.00 3.67
55 56 5.813672 TCATGTATCCAAGTTAAAGGTACGC 59.186 40.000 0.00 0.00 0.00 4.42
56 57 5.149973 TGTATCCAAGTTAAAGGTACGCA 57.850 39.130 0.00 0.00 0.00 5.24
57 58 4.931002 TGTATCCAAGTTAAAGGTACGCAC 59.069 41.667 0.00 0.00 0.00 5.34
58 59 3.472283 TCCAAGTTAAAGGTACGCACA 57.528 42.857 0.00 0.00 0.00 4.57
59 60 4.010667 TCCAAGTTAAAGGTACGCACAT 57.989 40.909 0.00 0.00 0.00 3.21
60 61 3.998341 TCCAAGTTAAAGGTACGCACATC 59.002 43.478 0.00 0.00 0.00 3.06
61 62 4.000988 CCAAGTTAAAGGTACGCACATCT 58.999 43.478 0.00 0.00 0.00 2.90
62 63 4.092968 CCAAGTTAAAGGTACGCACATCTC 59.907 45.833 0.00 0.00 0.00 2.75
63 64 3.508762 AGTTAAAGGTACGCACATCTCG 58.491 45.455 0.00 0.00 0.00 4.04
64 65 3.057033 AGTTAAAGGTACGCACATCTCGT 60.057 43.478 0.00 0.00 43.20 4.18
65 66 2.450609 AAAGGTACGCACATCTCGTT 57.549 45.000 0.00 0.00 40.89 3.85
66 67 2.450609 AAGGTACGCACATCTCGTTT 57.549 45.000 0.00 0.00 40.89 3.60
67 68 2.450609 AGGTACGCACATCTCGTTTT 57.549 45.000 0.00 0.00 40.89 2.43
68 69 2.066262 AGGTACGCACATCTCGTTTTG 58.934 47.619 0.00 0.00 40.89 2.44
69 70 1.796459 GGTACGCACATCTCGTTTTGT 59.204 47.619 0.00 0.00 40.89 2.83
70 71 2.988493 GGTACGCACATCTCGTTTTGTA 59.012 45.455 0.00 0.00 40.89 2.41
71 72 3.181537 GGTACGCACATCTCGTTTTGTAC 60.182 47.826 0.00 0.00 40.89 2.90
72 73 2.750948 ACGCACATCTCGTTTTGTACT 58.249 42.857 0.00 0.00 36.72 2.73
73 74 2.729882 ACGCACATCTCGTTTTGTACTC 59.270 45.455 0.00 0.00 36.72 2.59
74 75 2.987149 CGCACATCTCGTTTTGTACTCT 59.013 45.455 0.00 0.00 0.00 3.24
75 76 3.059570 CGCACATCTCGTTTTGTACTCTC 59.940 47.826 0.00 0.00 0.00 3.20
76 77 3.987868 GCACATCTCGTTTTGTACTCTCA 59.012 43.478 0.00 0.00 0.00 3.27
77 78 4.447724 GCACATCTCGTTTTGTACTCTCAA 59.552 41.667 0.00 0.00 0.00 3.02
78 79 5.050363 GCACATCTCGTTTTGTACTCTCAAA 60.050 40.000 0.00 0.00 35.83 2.69
79 80 6.511121 GCACATCTCGTTTTGTACTCTCAAAA 60.511 38.462 0.00 0.00 42.50 2.44
87 88 5.888691 TTTGTACTCTCAAAACAAGTGCA 57.111 34.783 0.00 0.00 34.80 4.57
88 89 5.484173 TTGTACTCTCAAAACAAGTGCAG 57.516 39.130 0.00 0.00 37.04 4.41
89 90 4.765273 TGTACTCTCAAAACAAGTGCAGA 58.235 39.130 0.00 0.00 31.90 4.26
90 91 5.182487 TGTACTCTCAAAACAAGTGCAGAA 58.818 37.500 0.00 0.00 31.90 3.02
91 92 5.822519 TGTACTCTCAAAACAAGTGCAGAAT 59.177 36.000 0.00 0.00 31.90 2.40
92 93 5.429957 ACTCTCAAAACAAGTGCAGAATC 57.570 39.130 0.00 0.00 0.00 2.52
93 94 4.024556 ACTCTCAAAACAAGTGCAGAATCG 60.025 41.667 0.00 0.00 0.00 3.34
94 95 2.975851 CTCAAAACAAGTGCAGAATCGC 59.024 45.455 0.00 0.00 0.00 4.58
95 96 2.618241 TCAAAACAAGTGCAGAATCGCT 59.382 40.909 0.00 0.00 0.00 4.93
96 97 3.812609 TCAAAACAAGTGCAGAATCGCTA 59.187 39.130 0.00 0.00 0.00 4.26
97 98 4.083855 TCAAAACAAGTGCAGAATCGCTAG 60.084 41.667 0.00 0.00 0.00 3.42
98 99 1.363744 ACAAGTGCAGAATCGCTAGC 58.636 50.000 4.06 4.06 0.00 3.42
99 100 1.066573 ACAAGTGCAGAATCGCTAGCT 60.067 47.619 13.93 0.00 0.00 3.32
100 101 1.592081 CAAGTGCAGAATCGCTAGCTC 59.408 52.381 13.93 3.56 0.00 4.09
101 102 0.103937 AGTGCAGAATCGCTAGCTCC 59.896 55.000 13.93 0.00 0.00 4.70
102 103 0.878086 GTGCAGAATCGCTAGCTCCC 60.878 60.000 13.93 0.00 0.00 4.30
103 104 1.301322 GCAGAATCGCTAGCTCCCC 60.301 63.158 13.93 0.00 0.00 4.81
104 105 2.032860 GCAGAATCGCTAGCTCCCCA 62.033 60.000 13.93 0.00 0.00 4.96
105 106 0.465705 CAGAATCGCTAGCTCCCCAA 59.534 55.000 13.93 0.00 0.00 4.12
106 107 1.134401 CAGAATCGCTAGCTCCCCAAA 60.134 52.381 13.93 0.00 0.00 3.28
107 108 1.771255 AGAATCGCTAGCTCCCCAAAT 59.229 47.619 13.93 0.00 0.00 2.32
108 109 2.173569 AGAATCGCTAGCTCCCCAAATT 59.826 45.455 13.93 1.28 0.00 1.82
109 110 2.736670 ATCGCTAGCTCCCCAAATTT 57.263 45.000 13.93 0.00 0.00 1.82
110 111 2.507407 TCGCTAGCTCCCCAAATTTT 57.493 45.000 13.93 0.00 0.00 1.82
111 112 3.637911 TCGCTAGCTCCCCAAATTTTA 57.362 42.857 13.93 0.00 0.00 1.52
112 113 3.275999 TCGCTAGCTCCCCAAATTTTAC 58.724 45.455 13.93 0.00 0.00 2.01
113 114 3.013921 CGCTAGCTCCCCAAATTTTACA 58.986 45.455 13.93 0.00 0.00 2.41
114 115 3.442273 CGCTAGCTCCCCAAATTTTACAA 59.558 43.478 13.93 0.00 0.00 2.41
115 116 4.082463 CGCTAGCTCCCCAAATTTTACAAA 60.082 41.667 13.93 0.00 0.00 2.83
116 117 5.168569 GCTAGCTCCCCAAATTTTACAAAC 58.831 41.667 7.70 0.00 0.00 2.93
117 118 5.047306 GCTAGCTCCCCAAATTTTACAAACT 60.047 40.000 7.70 0.00 0.00 2.66
118 119 6.152154 GCTAGCTCCCCAAATTTTACAAACTA 59.848 38.462 7.70 0.00 0.00 2.24
119 120 6.590234 AGCTCCCCAAATTTTACAAACTAG 57.410 37.500 0.00 0.00 0.00 2.57
120 121 5.047306 AGCTCCCCAAATTTTACAAACTAGC 60.047 40.000 0.00 0.00 0.00 3.42
121 122 5.279256 GCTCCCCAAATTTTACAAACTAGCA 60.279 40.000 0.00 0.00 0.00 3.49
122 123 6.339587 TCCCCAAATTTTACAAACTAGCAG 57.660 37.500 0.00 0.00 0.00 4.24
123 124 6.071984 TCCCCAAATTTTACAAACTAGCAGA 58.928 36.000 0.00 0.00 0.00 4.26
124 125 6.551601 TCCCCAAATTTTACAAACTAGCAGAA 59.448 34.615 0.00 0.00 0.00 3.02
125 126 7.070074 TCCCCAAATTTTACAAACTAGCAGAAA 59.930 33.333 0.00 0.00 0.00 2.52
126 127 7.877612 CCCCAAATTTTACAAACTAGCAGAAAT 59.122 33.333 0.00 0.00 0.00 2.17
127 128 9.271828 CCCAAATTTTACAAACTAGCAGAAATT 57.728 29.630 0.00 0.00 0.00 1.82
142 143 6.843069 GCAGAAATTTGCTTCACCTAAAAA 57.157 33.333 0.00 0.00 40.89 1.94
178 179 9.786105 AAAATTGCTTCACCTAAACAAAATTTG 57.214 25.926 3.89 3.89 0.00 2.32
179 180 5.982465 TGCTTCACCTAAACAAAATTTGC 57.018 34.783 5.52 0.00 0.00 3.68
180 181 5.669477 TGCTTCACCTAAACAAAATTTGCT 58.331 33.333 5.52 0.00 0.00 3.91
181 182 6.112058 TGCTTCACCTAAACAAAATTTGCTT 58.888 32.000 5.52 2.51 0.00 3.91
182 183 7.268586 TGCTTCACCTAAACAAAATTTGCTTA 58.731 30.769 5.52 3.63 0.00 3.09
183 184 7.437862 TGCTTCACCTAAACAAAATTTGCTTAG 59.562 33.333 17.38 17.38 38.45 2.18
184 185 7.651704 GCTTCACCTAAACAAAATTTGCTTAGA 59.348 33.333 23.02 7.50 40.18 2.10
185 186 9.528018 CTTCACCTAAACAAAATTTGCTTAGAA 57.472 29.630 23.02 12.87 40.18 2.10
186 187 9.877178 TTCACCTAAACAAAATTTGCTTAGAAA 57.123 25.926 23.02 14.26 40.18 2.52
187 188 9.877178 TCACCTAAACAAAATTTGCTTAGAAAA 57.123 25.926 23.02 10.00 40.18 2.29
195 196 8.829612 ACAAAATTTGCTTAGAAAATGTTCTGG 58.170 29.630 8.51 2.65 44.12 3.86
196 197 9.044150 CAAAATTTGCTTAGAAAATGTTCTGGA 57.956 29.630 8.51 0.00 44.12 3.86
197 198 9.612066 AAAATTTGCTTAGAAAATGTTCTGGAA 57.388 25.926 8.51 0.00 44.12 3.53
198 199 9.612066 AAATTTGCTTAGAAAATGTTCTGGAAA 57.388 25.926 8.51 6.74 44.12 3.13
199 200 8.822652 ATTTGCTTAGAAAATGTTCTGGAAAG 57.177 30.769 8.51 5.46 44.12 2.62
200 201 6.959639 TGCTTAGAAAATGTTCTGGAAAGT 57.040 33.333 8.51 0.00 44.12 2.66
201 202 8.458573 TTGCTTAGAAAATGTTCTGGAAAGTA 57.541 30.769 8.51 1.28 44.12 2.24
202 203 8.099364 TGCTTAGAAAATGTTCTGGAAAGTAG 57.901 34.615 8.51 0.00 44.12 2.57
203 204 7.936847 TGCTTAGAAAATGTTCTGGAAAGTAGA 59.063 33.333 8.51 0.00 44.12 2.59
204 205 8.784043 GCTTAGAAAATGTTCTGGAAAGTAGAA 58.216 33.333 8.51 0.00 44.12 2.10
211 212 4.868067 GTTCTGGAAAGTAGAACTGTCGA 58.132 43.478 9.86 0.00 46.53 4.20
212 213 5.287226 GTTCTGGAAAGTAGAACTGTCGAA 58.713 41.667 9.86 0.00 46.53 3.71
213 214 5.524971 TCTGGAAAGTAGAACTGTCGAAA 57.475 39.130 0.00 0.00 33.17 3.46
214 215 5.909477 TCTGGAAAGTAGAACTGTCGAAAA 58.091 37.500 0.00 0.00 33.17 2.29
215 216 6.342906 TCTGGAAAGTAGAACTGTCGAAAAA 58.657 36.000 0.00 0.00 33.17 1.94
216 217 6.990349 TCTGGAAAGTAGAACTGTCGAAAAAT 59.010 34.615 0.00 0.00 33.17 1.82
217 218 6.954944 TGGAAAGTAGAACTGTCGAAAAATG 58.045 36.000 0.00 0.00 33.17 2.32
218 219 6.764085 TGGAAAGTAGAACTGTCGAAAAATGA 59.236 34.615 0.00 0.00 33.17 2.57
219 220 7.444183 TGGAAAGTAGAACTGTCGAAAAATGAT 59.556 33.333 0.00 0.00 33.17 2.45
220 221 8.932791 GGAAAGTAGAACTGTCGAAAAATGATA 58.067 33.333 0.00 0.00 33.17 2.15
224 225 9.268268 AGTAGAACTGTCGAAAAATGATAAACA 57.732 29.630 0.00 0.00 0.00 2.83
225 226 9.872757 GTAGAACTGTCGAAAAATGATAAACAA 57.127 29.630 0.00 0.00 0.00 2.83
227 228 8.621286 AGAACTGTCGAAAAATGATAAACAAGT 58.379 29.630 0.00 0.00 0.00 3.16
228 229 9.872757 GAACTGTCGAAAAATGATAAACAAGTA 57.127 29.630 0.00 0.00 0.00 2.24
229 230 9.878599 AACTGTCGAAAAATGATAAACAAGTAG 57.121 29.630 0.00 0.00 0.00 2.57
230 231 9.268268 ACTGTCGAAAAATGATAAACAAGTAGA 57.732 29.630 0.00 0.00 0.00 2.59
240 241 9.574516 AATGATAAACAAGTAGAAAGTCAACCT 57.425 29.630 0.00 0.00 0.00 3.50
245 246 8.608844 AAACAAGTAGAAAGTCAACCTATGAG 57.391 34.615 0.00 0.00 39.19 2.90
246 247 6.166982 ACAAGTAGAAAGTCAACCTATGAGC 58.833 40.000 0.00 0.00 39.19 4.26
247 248 5.346181 AGTAGAAAGTCAACCTATGAGCC 57.654 43.478 0.00 0.00 39.19 4.70
248 249 3.636153 AGAAAGTCAACCTATGAGCCC 57.364 47.619 0.00 0.00 39.19 5.19
249 250 3.185455 AGAAAGTCAACCTATGAGCCCT 58.815 45.455 0.00 0.00 39.19 5.19
250 251 3.054802 AGAAAGTCAACCTATGAGCCCTG 60.055 47.826 0.00 0.00 39.19 4.45
251 252 2.254152 AGTCAACCTATGAGCCCTGA 57.746 50.000 0.00 0.00 39.19 3.86
252 253 2.769209 AGTCAACCTATGAGCCCTGAT 58.231 47.619 0.00 0.00 39.19 2.90
253 254 2.703007 AGTCAACCTATGAGCCCTGATC 59.297 50.000 0.00 0.00 39.19 2.92
254 255 2.703007 GTCAACCTATGAGCCCTGATCT 59.297 50.000 0.00 0.00 39.19 2.75
255 256 2.702478 TCAACCTATGAGCCCTGATCTG 59.298 50.000 0.00 0.00 33.04 2.90
256 257 1.727062 ACCTATGAGCCCTGATCTGG 58.273 55.000 11.58 11.58 0.00 3.86
257 258 1.061812 ACCTATGAGCCCTGATCTGGT 60.062 52.381 16.63 0.00 0.00 4.00
258 259 1.347050 CCTATGAGCCCTGATCTGGTG 59.653 57.143 16.63 9.65 0.00 4.17
259 260 2.045524 CTATGAGCCCTGATCTGGTGT 58.954 52.381 16.63 4.01 0.00 4.16
260 261 0.545171 ATGAGCCCTGATCTGGTGTG 59.455 55.000 16.63 3.79 0.00 3.82
261 262 0.837691 TGAGCCCTGATCTGGTGTGT 60.838 55.000 16.63 0.00 0.00 3.72
262 263 0.392193 GAGCCCTGATCTGGTGTGTG 60.392 60.000 16.63 3.11 0.00 3.82
263 264 1.130054 AGCCCTGATCTGGTGTGTGT 61.130 55.000 16.63 0.00 0.00 3.72
264 265 0.250901 GCCCTGATCTGGTGTGTGTT 60.251 55.000 16.63 0.00 0.00 3.32
265 266 1.527034 CCCTGATCTGGTGTGTGTTG 58.473 55.000 16.63 0.00 0.00 3.33
266 267 0.877071 CCTGATCTGGTGTGTGTTGC 59.123 55.000 10.40 0.00 0.00 4.17
267 268 0.877071 CTGATCTGGTGTGTGTTGCC 59.123 55.000 0.00 0.00 0.00 4.52
268 269 0.884259 TGATCTGGTGTGTGTTGCCG 60.884 55.000 0.00 0.00 0.00 5.69
269 270 1.577328 GATCTGGTGTGTGTTGCCGG 61.577 60.000 0.00 0.00 0.00 6.13
270 271 2.337879 ATCTGGTGTGTGTTGCCGGT 62.338 55.000 1.90 0.00 0.00 5.28
271 272 2.044848 TGGTGTGTGTTGCCGGTT 60.045 55.556 1.90 0.00 0.00 4.44
272 273 2.058829 CTGGTGTGTGTTGCCGGTTC 62.059 60.000 1.90 0.00 0.00 3.62
273 274 1.822186 GGTGTGTGTTGCCGGTTCT 60.822 57.895 1.90 0.00 0.00 3.01
274 275 0.533308 GGTGTGTGTTGCCGGTTCTA 60.533 55.000 1.90 0.00 0.00 2.10
275 276 1.519408 GTGTGTGTTGCCGGTTCTAT 58.481 50.000 1.90 0.00 0.00 1.98
276 277 1.196808 GTGTGTGTTGCCGGTTCTATG 59.803 52.381 1.90 0.00 0.00 2.23
277 278 0.168128 GTGTGTTGCCGGTTCTATGC 59.832 55.000 1.90 0.00 0.00 3.14
278 279 0.958382 TGTGTTGCCGGTTCTATGCC 60.958 55.000 1.90 0.00 0.00 4.40
279 280 1.377987 TGTTGCCGGTTCTATGCCC 60.378 57.895 1.90 0.00 0.00 5.36
280 281 2.124901 TTGCCGGTTCTATGCCCG 60.125 61.111 1.90 0.00 43.82 6.13
281 282 4.849310 TGCCGGTTCTATGCCCGC 62.849 66.667 1.90 0.00 42.87 6.13
282 283 4.849310 GCCGGTTCTATGCCCGCA 62.849 66.667 1.90 0.00 42.87 5.69
283 284 2.588877 CCGGTTCTATGCCCGCAG 60.589 66.667 0.00 0.00 42.87 5.18
284 285 2.499205 CGGTTCTATGCCCGCAGA 59.501 61.111 0.00 0.00 37.43 4.26
285 286 1.883084 CGGTTCTATGCCCGCAGAC 60.883 63.158 0.00 0.00 37.43 3.51
286 287 1.220749 GGTTCTATGCCCGCAGACA 59.779 57.895 0.00 0.00 0.00 3.41
287 288 1.090052 GGTTCTATGCCCGCAGACAC 61.090 60.000 0.00 0.00 0.00 3.67
288 289 1.153647 TTCTATGCCCGCAGACACG 60.154 57.895 0.00 0.00 0.00 4.49
289 290 3.264897 CTATGCCCGCAGACACGC 61.265 66.667 0.00 0.00 0.00 5.34
290 291 3.723235 CTATGCCCGCAGACACGCT 62.723 63.158 0.00 0.00 0.00 5.07
291 292 2.349969 CTATGCCCGCAGACACGCTA 62.350 60.000 0.00 0.00 0.00 4.26
292 293 2.349969 TATGCCCGCAGACACGCTAG 62.350 60.000 0.00 0.00 0.00 3.42
294 295 4.135153 CCCGCAGACACGCTAGCT 62.135 66.667 13.93 0.00 0.00 3.32
295 296 2.771639 CCCGCAGACACGCTAGCTA 61.772 63.158 13.93 0.00 0.00 3.32
296 297 1.586564 CCGCAGACACGCTAGCTAC 60.587 63.158 13.93 1.36 0.00 3.58
297 298 1.429825 CGCAGACACGCTAGCTACT 59.570 57.895 13.93 3.74 0.00 2.57
298 299 0.656259 CGCAGACACGCTAGCTACTA 59.344 55.000 13.93 0.00 0.00 1.82
299 300 1.264557 CGCAGACACGCTAGCTACTAT 59.735 52.381 13.93 0.00 0.00 2.12
300 301 2.656085 GCAGACACGCTAGCTACTATG 58.344 52.381 13.93 7.39 0.00 2.23
301 302 2.605823 GCAGACACGCTAGCTACTATGG 60.606 54.545 13.93 0.00 0.00 2.74
302 303 1.609555 AGACACGCTAGCTACTATGGC 59.390 52.381 13.93 5.41 0.00 4.40
304 305 4.154613 CGCTAGCTACTATGGCGC 57.845 61.111 13.93 0.00 39.42 6.53
305 306 1.444553 CGCTAGCTACTATGGCGCC 60.445 63.158 22.73 22.73 39.42 6.53
306 307 1.666011 GCTAGCTACTATGGCGCCA 59.334 57.895 34.80 34.80 34.52 5.69
307 308 0.033504 GCTAGCTACTATGGCGCCAA 59.966 55.000 36.33 21.23 34.52 4.52
308 309 1.784525 CTAGCTACTATGGCGCCAAC 58.215 55.000 36.33 18.11 34.52 3.77
309 310 1.341531 CTAGCTACTATGGCGCCAACT 59.658 52.381 36.33 21.59 34.52 3.16
310 311 0.179073 AGCTACTATGGCGCCAACTG 60.179 55.000 36.33 26.65 34.52 3.16
311 312 1.160329 GCTACTATGGCGCCAACTGG 61.160 60.000 36.33 22.73 38.53 4.00
343 344 6.339587 ACCGTGTTCATTTGTCCATATTTT 57.660 33.333 0.00 0.00 0.00 1.82
349 350 9.039870 GTGTTCATTTGTCCATATTTTGTCAAA 57.960 29.630 0.00 0.00 34.33 2.69
350 351 9.039870 TGTTCATTTGTCCATATTTTGTCAAAC 57.960 29.630 0.00 0.00 33.40 2.93
359 360 8.810427 GTCCATATTTTGTCAAACTTGCATATG 58.190 33.333 14.63 14.63 0.00 1.78
364 365 8.746922 ATTTTGTCAAACTTGCATATGTACTG 57.253 30.769 4.29 0.00 0.00 2.74
365 366 5.295431 TGTCAAACTTGCATATGTACTGC 57.705 39.130 4.29 0.00 40.10 4.40
379 381 8.533965 GCATATGTACTGCATTTGTTTTGTATG 58.466 33.333 4.29 0.00 38.33 2.39
387 389 6.283694 TGCATTTGTTTTGTATGCCTTGTAA 58.716 32.000 0.00 0.00 43.01 2.41
396 398 5.766150 TGTATGCCTTGTAATGCCAATAC 57.234 39.130 0.00 0.00 0.00 1.89
398 400 2.020720 TGCCTTGTAATGCCAATACCG 58.979 47.619 0.00 0.00 0.00 4.02
399 401 2.021457 GCCTTGTAATGCCAATACCGT 58.979 47.619 0.00 0.00 0.00 4.83
402 404 4.496840 GCCTTGTAATGCCAATACCGTAAC 60.497 45.833 0.00 0.00 0.00 2.50
407 409 1.010580 TGCCAATACCGTAACATGCG 58.989 50.000 0.00 0.00 0.00 4.73
410 412 3.061322 GCCAATACCGTAACATGCGATA 58.939 45.455 0.00 0.00 0.00 2.92
411 413 3.120786 GCCAATACCGTAACATGCGATAC 60.121 47.826 0.00 0.00 0.00 2.24
412 414 4.052608 CCAATACCGTAACATGCGATACA 58.947 43.478 0.00 0.00 0.00 2.29
413 415 4.688879 CCAATACCGTAACATGCGATACAT 59.311 41.667 0.00 0.00 40.66 2.29
414 416 5.865013 CCAATACCGTAACATGCGATACATA 59.135 40.000 0.00 0.00 36.64 2.29
416 418 7.064134 CCAATACCGTAACATGCGATACATAAT 59.936 37.037 0.00 0.00 36.64 1.28
418 420 6.939551 ACCGTAACATGCGATACATAATAC 57.060 37.500 0.00 0.00 36.64 1.89
419 421 5.570206 ACCGTAACATGCGATACATAATACG 59.430 40.000 12.04 12.04 44.25 3.06
420 422 5.570206 CCGTAACATGCGATACATAATACGT 59.430 40.000 15.27 0.00 43.73 3.57
421 423 6.742264 CCGTAACATGCGATACATAATACGTA 59.258 38.462 0.00 0.00 43.73 3.57
448 450 6.636562 ACAAGAATACATACGCTACTAGCT 57.363 37.500 6.50 0.00 39.60 3.32
455 457 8.798748 AATACATACGCTACTAGCTAAAACTG 57.201 34.615 6.50 0.00 39.60 3.16
498 501 3.650369 GCGAAAAGGACGCCTTCA 58.350 55.556 10.87 0.00 43.92 3.02
503 506 3.365565 GCGAAAAGGACGCCTTCAAAATA 60.366 43.478 10.87 0.00 43.92 1.40
504 507 4.156182 CGAAAAGGACGCCTTCAAAATAC 58.844 43.478 10.87 0.31 43.92 1.89
505 508 3.824414 AAAGGACGCCTTCAAAATACG 57.176 42.857 10.87 0.00 43.92 3.06
506 509 1.734163 AGGACGCCTTCAAAATACGG 58.266 50.000 0.00 0.00 0.00 4.02
507 510 0.098200 GGACGCCTTCAAAATACGGC 59.902 55.000 0.00 0.00 39.14 5.68
508 511 0.098200 GACGCCTTCAAAATACGGCC 59.902 55.000 0.00 0.00 39.34 6.13
509 512 1.061887 CGCCTTCAAAATACGGCCG 59.938 57.895 26.86 26.86 39.34 6.13
510 513 1.431845 GCCTTCAAAATACGGCCGG 59.568 57.895 31.76 10.66 36.56 6.13
511 514 2.000215 GCCTTCAAAATACGGCCGGG 62.000 60.000 31.76 18.29 36.56 5.73
512 515 0.393267 CCTTCAAAATACGGCCGGGA 60.393 55.000 31.76 18.02 0.00 5.14
513 516 1.675552 CTTCAAAATACGGCCGGGAT 58.324 50.000 31.76 19.64 0.00 3.85
514 517 1.333619 CTTCAAAATACGGCCGGGATG 59.666 52.381 31.76 19.69 0.00 3.51
515 518 1.098712 TCAAAATACGGCCGGGATGC 61.099 55.000 31.76 0.00 0.00 3.91
516 519 1.101049 CAAAATACGGCCGGGATGCT 61.101 55.000 31.76 9.87 0.00 3.79
517 520 0.818040 AAAATACGGCCGGGATGCTC 60.818 55.000 31.76 0.00 0.00 4.26
518 521 2.676163 AAATACGGCCGGGATGCTCC 62.676 60.000 31.76 0.00 35.23 4.70
519 522 4.853142 TACGGCCGGGATGCTCCT 62.853 66.667 31.76 7.29 36.57 3.69
524 527 4.227134 CCGGGATGCTCCTCGGTG 62.227 72.222 16.53 0.00 41.98 4.94
525 528 4.899239 CGGGATGCTCCTCGGTGC 62.899 72.222 3.17 3.17 36.57 5.01
526 529 4.554036 GGGATGCTCCTCGGTGCC 62.554 72.222 7.46 0.00 36.57 5.01
534 537 4.899239 CCTCGGTGCCATCGCCTC 62.899 72.222 0.00 0.00 40.70 4.70
537 540 4.473520 CGGTGCCATCGCCTCCTT 62.474 66.667 0.00 0.00 40.70 3.36
538 541 2.825836 GGTGCCATCGCCTCCTTG 60.826 66.667 0.00 0.00 39.75 3.61
630 634 1.498865 AAGCAACAGCGTCCAACGAG 61.499 55.000 3.28 0.00 46.05 4.18
637 641 1.868251 GCGTCCAACGAGAGCTACG 60.868 63.158 10.54 10.54 46.05 3.51
638 642 1.868251 CGTCCAACGAGAGCTACGC 60.868 63.158 11.77 0.00 46.05 4.42
639 643 1.516603 GTCCAACGAGAGCTACGCC 60.517 63.158 11.77 0.00 0.00 5.68
654 658 3.616802 GCTACGCCCCTCATTTATCTACC 60.617 52.174 0.00 0.00 0.00 3.18
658 662 1.337823 CCCCTCATTTATCTACCCGCG 60.338 57.143 0.00 0.00 0.00 6.46
678 682 0.248743 TTCGTACACCATCGCGATCC 60.249 55.000 20.85 2.18 33.27 3.36
695 709 2.602676 CCCAACCACCGTCTCCCAT 61.603 63.158 0.00 0.00 0.00 4.00
711 725 3.075148 TCCCATGATTTGTTTACGCGAA 58.925 40.909 15.93 0.00 0.00 4.70
712 726 3.692101 TCCCATGATTTGTTTACGCGAAT 59.308 39.130 15.93 0.00 0.00 3.34
713 727 4.035017 CCCATGATTTGTTTACGCGAATC 58.965 43.478 15.93 11.19 38.89 2.52
714 728 4.201910 CCCATGATTTGTTTACGCGAATCT 60.202 41.667 15.93 0.00 39.08 2.40
715 729 4.963953 CCATGATTTGTTTACGCGAATCTC 59.036 41.667 15.93 0.00 39.08 2.75
716 730 5.220662 CCATGATTTGTTTACGCGAATCTCT 60.221 40.000 15.93 0.00 39.08 3.10
717 731 6.019075 CCATGATTTGTTTACGCGAATCTCTA 60.019 38.462 15.93 0.00 39.08 2.43
718 732 6.327177 TGATTTGTTTACGCGAATCTCTAC 57.673 37.500 15.93 1.12 39.08 2.59
719 733 5.865013 TGATTTGTTTACGCGAATCTCTACA 59.135 36.000 15.93 3.97 39.08 2.74
720 734 6.533723 TGATTTGTTTACGCGAATCTCTACAT 59.466 34.615 15.93 0.00 39.08 2.29
721 735 5.696260 TTGTTTACGCGAATCTCTACATG 57.304 39.130 15.93 0.00 0.00 3.21
722 736 3.550275 TGTTTACGCGAATCTCTACATGC 59.450 43.478 15.93 0.00 0.00 4.06
725 739 1.484659 GCGAATCTCTACATGCGCG 59.515 57.895 0.00 0.00 35.02 6.86
726 740 0.934901 GCGAATCTCTACATGCGCGA 60.935 55.000 12.10 0.00 35.02 5.87
727 741 1.477105 CGAATCTCTACATGCGCGAA 58.523 50.000 12.10 0.00 0.00 4.70
728 742 1.852280 CGAATCTCTACATGCGCGAAA 59.148 47.619 12.10 0.00 0.00 3.46
729 743 2.097685 CGAATCTCTACATGCGCGAAAG 60.098 50.000 12.10 0.00 0.00 2.62
730 744 2.871182 ATCTCTACATGCGCGAAAGA 57.129 45.000 12.10 0.00 0.00 2.52
731 745 2.871182 TCTCTACATGCGCGAAAGAT 57.129 45.000 12.10 0.00 0.00 2.40
732 746 2.732366 TCTCTACATGCGCGAAAGATC 58.268 47.619 12.10 0.00 0.00 2.75
733 747 2.099098 TCTCTACATGCGCGAAAGATCA 59.901 45.455 12.10 0.00 0.00 2.92
734 748 2.860136 CTCTACATGCGCGAAAGATCAA 59.140 45.455 12.10 0.00 0.00 2.57
735 749 3.457234 TCTACATGCGCGAAAGATCAAT 58.543 40.909 12.10 0.00 0.00 2.57
736 750 2.744787 ACATGCGCGAAAGATCAATC 57.255 45.000 12.10 0.00 0.00 2.67
737 751 2.009051 ACATGCGCGAAAGATCAATCA 58.991 42.857 12.10 0.00 0.00 2.57
738 752 2.615447 ACATGCGCGAAAGATCAATCAT 59.385 40.909 12.10 0.00 0.00 2.45
743 757 2.155732 CGCGAAAGATCAATCATACCGG 59.844 50.000 0.00 0.00 0.00 5.28
746 760 4.621991 CGAAAGATCAATCATACCGGTCT 58.378 43.478 12.40 0.00 0.00 3.85
909 943 1.619983 GTTGCACCGTTCGTTTGTTT 58.380 45.000 0.00 0.00 0.00 2.83
910 944 1.319079 GTTGCACCGTTCGTTTGTTTG 59.681 47.619 0.00 0.00 0.00 2.93
911 945 0.798771 TGCACCGTTCGTTTGTTTGC 60.799 50.000 0.00 0.00 0.00 3.68
912 946 0.524604 GCACCGTTCGTTTGTTTGCT 60.525 50.000 0.00 0.00 0.00 3.91
913 947 1.268133 GCACCGTTCGTTTGTTTGCTA 60.268 47.619 0.00 0.00 0.00 3.49
914 948 2.603652 GCACCGTTCGTTTGTTTGCTAT 60.604 45.455 0.00 0.00 0.00 2.97
918 952 4.751098 ACCGTTCGTTTGTTTGCTATAGAA 59.249 37.500 3.21 0.00 0.00 2.10
963 999 1.661821 CGGCGGCGAGAAGATTAGG 60.662 63.158 29.19 0.00 0.00 2.69
967 1003 1.931263 GCGGCGAGAAGATTAGGTAGC 60.931 57.143 12.98 0.00 0.00 3.58
968 1004 1.609555 CGGCGAGAAGATTAGGTAGCT 59.390 52.381 0.00 0.00 0.00 3.32
1344 1393 4.394712 CCCAGGCCAGGTGACGAC 62.395 72.222 13.97 0.00 0.00 4.34
1508 1574 4.068599 TGCACTAATTCCGTTCATGTTGA 58.931 39.130 0.00 0.00 0.00 3.18
1522 1589 6.092122 CGTTCATGTTGATTTTACCTGCTCTA 59.908 38.462 0.00 0.00 0.00 2.43
1538 1605 2.611292 GCTCTACTGCTGCCAATACAAG 59.389 50.000 0.00 0.00 0.00 3.16
1540 1608 2.027285 TCTACTGCTGCCAATACAAGCA 60.027 45.455 0.00 0.00 37.46 3.91
1585 1653 7.817962 ACTAGCACGATTTGATTAACTTGTACT 59.182 33.333 0.00 0.00 0.00 2.73
1586 1654 9.297586 CTAGCACGATTTGATTAACTTGTACTA 57.702 33.333 0.00 0.00 0.00 1.82
1587 1655 7.960793 AGCACGATTTGATTAACTTGTACTAC 58.039 34.615 0.00 0.00 0.00 2.73
1589 1657 7.388712 CACGATTTGATTAACTTGTACTACCG 58.611 38.462 0.00 0.00 0.00 4.02
1590 1658 6.035327 ACGATTTGATTAACTTGTACTACCGC 59.965 38.462 0.00 0.00 0.00 5.68
1591 1659 6.035220 CGATTTGATTAACTTGTACTACCGCA 59.965 38.462 0.00 0.00 0.00 5.69
1592 1660 6.470557 TTTGATTAACTTGTACTACCGCAC 57.529 37.500 0.00 0.00 0.00 5.34
1596 1664 5.703978 TTAACTTGTACTACCGCACACTA 57.296 39.130 0.00 0.00 0.00 2.74
1597 1665 3.565905 ACTTGTACTACCGCACACTAC 57.434 47.619 0.00 0.00 0.00 2.73
1598 1666 2.886523 ACTTGTACTACCGCACACTACA 59.113 45.455 0.00 0.00 0.00 2.74
1599 1667 2.995466 TGTACTACCGCACACTACAC 57.005 50.000 0.00 0.00 0.00 2.90
1600 1668 2.507484 TGTACTACCGCACACTACACT 58.493 47.619 0.00 0.00 0.00 3.55
1601 1669 2.227149 TGTACTACCGCACACTACACTG 59.773 50.000 0.00 0.00 0.00 3.66
1602 1670 0.601558 ACTACCGCACACTACACTGG 59.398 55.000 0.00 0.00 0.00 4.00
1603 1671 0.885879 CTACCGCACACTACACTGGA 59.114 55.000 0.00 0.00 0.00 3.86
1604 1672 1.271379 CTACCGCACACTACACTGGAA 59.729 52.381 0.00 0.00 0.00 3.53
1605 1673 0.249741 ACCGCACACTACACTGGAAC 60.250 55.000 0.00 0.00 0.00 3.62
1639 1707 5.763204 ACATTTGTCGTTCCATTTCTACTGT 59.237 36.000 0.00 0.00 0.00 3.55
1647 1715 6.425721 TCGTTCCATTTCTACTGTTGTTAAGG 59.574 38.462 0.00 0.00 0.00 2.69
1679 1747 8.673626 TGAAGATTTTTCATTGCTACGAAATC 57.326 30.769 0.00 0.00 35.05 2.17
1680 1748 8.296000 TGAAGATTTTTCATTGCTACGAAATCA 58.704 29.630 8.70 0.00 36.47 2.57
1681 1749 9.128107 GAAGATTTTTCATTGCTACGAAATCAA 57.872 29.630 8.70 0.00 36.47 2.57
1682 1750 9.643693 AAGATTTTTCATTGCTACGAAATCAAT 57.356 25.926 8.70 0.00 36.47 2.57
1686 1754 9.773328 TTTTTCATTGCTACGAAATCAATAGAG 57.227 29.630 0.00 0.00 31.54 2.43
1688 1756 8.716646 TTCATTGCTACGAAATCAATAGAGAA 57.283 30.769 0.00 0.00 0.00 2.87
1690 1758 8.982685 TCATTGCTACGAAATCAATAGAGAATC 58.017 33.333 0.00 0.00 0.00 2.52
1737 1824 5.235186 CGTTGATTACAAGCTATTGGAGAGG 59.765 44.000 0.00 0.00 40.97 3.69
1768 1855 9.906660 TGACATTTTTCTATGATGTAACCAAAC 57.093 29.630 0.00 0.00 34.38 2.93
1771 1858 9.061610 CATTTTTCTATGATGTAACCAAACGAC 57.938 33.333 0.00 0.00 0.00 4.34
1776 1863 8.385898 TCTATGATGTAACCAAACGACTTTTT 57.614 30.769 0.00 0.00 0.00 1.94
1777 1864 8.286800 TCTATGATGTAACCAAACGACTTTTTG 58.713 33.333 0.00 0.00 36.40 2.44
1801 1890 6.127338 TGGTGACAATTTGTGTAATGTCCAAA 60.127 34.615 6.80 0.00 41.96 3.28
1804 1893 5.606505 ACAATTTGTGTAATGTCCAAACCC 58.393 37.500 0.15 0.00 39.29 4.11
1809 1898 5.050126 TGTGTAATGTCCAAACCCTTACA 57.950 39.130 0.00 0.00 33.55 2.41
1820 1909 3.720949 AACCCTTACAAACGAAAAGGC 57.279 42.857 0.00 0.00 38.78 4.35
1840 1929 2.489329 GCAAAGCTATTCTGTCCTTGCA 59.511 45.455 8.66 0.00 0.00 4.08
1851 1940 3.894427 TCTGTCCTTGCATCTCTAGGATC 59.106 47.826 7.33 3.02 45.89 3.36
1853 1942 3.640498 TGTCCTTGCATCTCTAGGATCTG 59.360 47.826 7.33 0.00 45.89 2.90
1866 1955 3.228188 AGGATCTGGCAAGTCAAACAA 57.772 42.857 0.00 0.00 0.00 2.83
1872 1961 0.102844 GGCAAGTCAAACAAGCTGCA 59.897 50.000 1.02 0.00 0.00 4.41
1889 1978 7.382218 ACAAGCTGCAACATCAACTAAATAAAC 59.618 33.333 1.02 0.00 0.00 2.01
1891 1980 7.605449 AGCTGCAACATCAACTAAATAAACAT 58.395 30.769 1.02 0.00 0.00 2.71
1909 1998 8.951787 ATAAACATGCTGCAATATGACAAAAT 57.048 26.923 6.36 0.00 0.00 1.82
1934 2023 4.702131 ACTAGAATGAGTGCACCCATTTTC 59.298 41.667 25.05 15.65 33.57 2.29
1935 2024 3.771216 AGAATGAGTGCACCCATTTTCT 58.229 40.909 25.05 17.49 33.57 2.52
1936 2025 4.922206 AGAATGAGTGCACCCATTTTCTA 58.078 39.130 25.05 2.81 33.57 2.10
1937 2026 4.946157 AGAATGAGTGCACCCATTTTCTAG 59.054 41.667 25.05 0.00 33.57 2.43
1938 2027 4.574674 ATGAGTGCACCCATTTTCTAGA 57.425 40.909 14.63 0.00 0.00 2.43
1939 2028 4.365514 TGAGTGCACCCATTTTCTAGAA 57.634 40.909 14.63 0.00 0.00 2.10
1940 2029 4.922206 TGAGTGCACCCATTTTCTAGAAT 58.078 39.130 14.63 0.00 0.00 2.40
1941 2030 6.061022 TGAGTGCACCCATTTTCTAGAATA 57.939 37.500 14.63 1.52 0.00 1.75
1942 2031 6.662755 TGAGTGCACCCATTTTCTAGAATAT 58.337 36.000 14.63 4.19 0.00 1.28
1943 2032 7.801104 TGAGTGCACCCATTTTCTAGAATATA 58.199 34.615 14.63 0.00 0.00 0.86
1944 2033 7.933577 TGAGTGCACCCATTTTCTAGAATATAG 59.066 37.037 14.63 5.04 0.00 1.31
1945 2034 7.806180 AGTGCACCCATTTTCTAGAATATAGT 58.194 34.615 14.63 5.63 0.00 2.12
2001 2090 5.106317 GGAAAAACTCACACACACAAGAAGA 60.106 40.000 0.00 0.00 0.00 2.87
2054 2143 3.070446 AGGTATCACGAAACCACAACTCA 59.930 43.478 0.00 0.00 38.30 3.41
2067 2159 9.145865 GAAACCACAACTCAAGATTTTAACAAA 57.854 29.630 0.00 0.00 0.00 2.83
2072 2164 8.930760 CACAACTCAAGATTTTAACAAAAACCA 58.069 29.630 0.00 0.00 33.47 3.67
2113 2205 4.986034 GGTAACAAAAACCCAAAATCTCCG 59.014 41.667 0.00 0.00 0.00 4.63
2125 2217 3.982576 AAATCTCCGGTTGAACACAAC 57.017 42.857 0.00 0.00 41.91 3.32
2129 2221 2.960384 TCTCCGGTTGAACACAACTCTA 59.040 45.455 0.00 0.00 42.18 2.43
2131 2223 4.039973 TCTCCGGTTGAACACAACTCTAAT 59.960 41.667 0.00 0.00 42.18 1.73
2169 2261 6.929049 CCAGTCATAGACACAAAGTAGTGAAA 59.071 38.462 0.57 0.00 42.05 2.69
2231 2326 3.471354 TCGACTAGACATGAGCCGA 57.529 52.632 0.00 0.00 0.00 5.54
2301 2396 5.517770 GGCTGAAGATTTTCCAAATTGATCG 59.482 40.000 0.00 0.00 32.09 3.69
2314 2409 8.964420 TCCAAATTGATCGTTTAAGATGTTTC 57.036 30.769 0.00 0.00 0.00 2.78
2317 2412 8.779561 CAAATTGATCGTTTAAGATGTTTCGAG 58.220 33.333 0.00 0.00 0.00 4.04
2323 2418 7.329438 TCGTTTAAGATGTTTCGAGTTACTG 57.671 36.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.943909 ATTTTCTCGAACTAGACGGATAAAAT 57.056 30.769 0.00 11.10 0.00 1.82
3 4 8.653338 CAATTTTCTCGAACTAGACGGATAAAA 58.347 33.333 0.00 9.62 0.00 1.52
4 5 7.201496 GCAATTTTCTCGAACTAGACGGATAAA 60.201 37.037 0.00 4.40 0.00 1.40
5 6 6.255020 GCAATTTTCTCGAACTAGACGGATAA 59.745 38.462 0.00 4.46 0.00 1.75
6 7 5.747197 GCAATTTTCTCGAACTAGACGGATA 59.253 40.000 0.00 0.00 0.00 2.59
7 8 4.567159 GCAATTTTCTCGAACTAGACGGAT 59.433 41.667 0.00 0.00 0.00 4.18
8 9 3.924686 GCAATTTTCTCGAACTAGACGGA 59.075 43.478 0.00 0.00 0.00 4.69
9 10 3.927142 AGCAATTTTCTCGAACTAGACGG 59.073 43.478 0.00 0.00 0.00 4.79
10 11 4.621460 TGAGCAATTTTCTCGAACTAGACG 59.379 41.667 0.00 2.01 33.41 4.18
11 12 6.091441 ACATGAGCAATTTTCTCGAACTAGAC 59.909 38.462 0.00 0.00 33.41 2.59
12 13 6.166279 ACATGAGCAATTTTCTCGAACTAGA 58.834 36.000 0.00 0.00 33.41 2.43
13 14 6.414408 ACATGAGCAATTTTCTCGAACTAG 57.586 37.500 0.00 0.00 33.41 2.57
14 15 7.224753 GGATACATGAGCAATTTTCTCGAACTA 59.775 37.037 0.00 0.00 33.41 2.24
15 16 6.037610 GGATACATGAGCAATTTTCTCGAACT 59.962 38.462 0.00 0.00 33.41 3.01
16 17 6.183360 TGGATACATGAGCAATTTTCTCGAAC 60.183 38.462 0.00 0.00 46.17 3.95
17 18 5.879777 TGGATACATGAGCAATTTTCTCGAA 59.120 36.000 0.00 0.00 46.17 3.71
18 19 5.427378 TGGATACATGAGCAATTTTCTCGA 58.573 37.500 0.00 0.00 46.17 4.04
19 20 5.739752 TGGATACATGAGCAATTTTCTCG 57.260 39.130 0.00 0.00 46.17 4.04
35 36 4.931002 TGTGCGTACCTTTAACTTGGATAC 59.069 41.667 0.00 0.00 0.00 2.24
36 37 5.149973 TGTGCGTACCTTTAACTTGGATA 57.850 39.130 0.00 0.00 0.00 2.59
37 38 4.010667 TGTGCGTACCTTTAACTTGGAT 57.989 40.909 0.00 0.00 0.00 3.41
38 39 3.472283 TGTGCGTACCTTTAACTTGGA 57.528 42.857 0.00 0.00 0.00 3.53
39 40 4.000988 AGATGTGCGTACCTTTAACTTGG 58.999 43.478 0.00 0.00 0.00 3.61
40 41 4.201589 CGAGATGTGCGTACCTTTAACTTG 60.202 45.833 0.00 0.00 0.00 3.16
41 42 3.924686 CGAGATGTGCGTACCTTTAACTT 59.075 43.478 0.00 0.00 0.00 2.66
42 43 3.057033 ACGAGATGTGCGTACCTTTAACT 60.057 43.478 0.00 0.00 40.65 2.24
43 44 3.248266 ACGAGATGTGCGTACCTTTAAC 58.752 45.455 0.00 0.00 40.65 2.01
44 45 3.581024 ACGAGATGTGCGTACCTTTAA 57.419 42.857 0.00 0.00 40.65 1.52
45 46 3.581024 AACGAGATGTGCGTACCTTTA 57.419 42.857 0.00 0.00 41.75 1.85
46 47 2.450609 AACGAGATGTGCGTACCTTT 57.549 45.000 0.00 0.00 41.75 3.11
47 48 2.450609 AAACGAGATGTGCGTACCTT 57.549 45.000 0.00 0.00 41.75 3.50
48 49 2.066262 CAAAACGAGATGTGCGTACCT 58.934 47.619 0.00 0.00 41.75 3.08
49 50 1.796459 ACAAAACGAGATGTGCGTACC 59.204 47.619 0.00 0.00 41.75 3.34
50 51 3.671928 AGTACAAAACGAGATGTGCGTAC 59.328 43.478 0.00 0.00 41.75 3.67
51 52 3.904571 AGTACAAAACGAGATGTGCGTA 58.095 40.909 0.00 0.00 41.75 4.42
52 53 2.729882 GAGTACAAAACGAGATGTGCGT 59.270 45.455 0.00 0.00 44.94 5.24
53 54 2.987149 AGAGTACAAAACGAGATGTGCG 59.013 45.455 0.00 0.00 37.26 5.34
54 55 3.987868 TGAGAGTACAAAACGAGATGTGC 59.012 43.478 0.00 0.00 33.07 4.57
55 56 6.525121 TTTGAGAGTACAAAACGAGATGTG 57.475 37.500 0.00 0.00 36.92 3.21
64 65 6.150307 TCTGCACTTGTTTTGAGAGTACAAAA 59.850 34.615 0.00 0.00 44.08 2.44
65 66 5.645929 TCTGCACTTGTTTTGAGAGTACAAA 59.354 36.000 0.00 0.00 37.87 2.83
66 67 5.182487 TCTGCACTTGTTTTGAGAGTACAA 58.818 37.500 0.00 0.00 0.00 2.41
67 68 4.765273 TCTGCACTTGTTTTGAGAGTACA 58.235 39.130 0.00 0.00 0.00 2.90
68 69 5.734855 TTCTGCACTTGTTTTGAGAGTAC 57.265 39.130 0.00 0.00 0.00 2.73
69 70 5.177511 CGATTCTGCACTTGTTTTGAGAGTA 59.822 40.000 0.00 0.00 0.00 2.59
70 71 4.024556 CGATTCTGCACTTGTTTTGAGAGT 60.025 41.667 0.00 0.00 0.00 3.24
71 72 4.461405 CGATTCTGCACTTGTTTTGAGAG 58.539 43.478 0.00 0.00 0.00 3.20
72 73 3.303990 GCGATTCTGCACTTGTTTTGAGA 60.304 43.478 0.00 0.00 34.15 3.27
73 74 2.975851 GCGATTCTGCACTTGTTTTGAG 59.024 45.455 0.00 0.00 34.15 3.02
74 75 2.618241 AGCGATTCTGCACTTGTTTTGA 59.382 40.909 0.00 0.00 37.31 2.69
75 76 3.004024 AGCGATTCTGCACTTGTTTTG 57.996 42.857 0.00 0.00 37.31 2.44
76 77 3.365364 GCTAGCGATTCTGCACTTGTTTT 60.365 43.478 0.00 0.00 37.31 2.43
77 78 2.160417 GCTAGCGATTCTGCACTTGTTT 59.840 45.455 0.00 0.00 37.31 2.83
78 79 1.734465 GCTAGCGATTCTGCACTTGTT 59.266 47.619 0.00 0.00 37.31 2.83
79 80 1.066573 AGCTAGCGATTCTGCACTTGT 60.067 47.619 9.55 0.00 37.31 3.16
80 81 1.592081 GAGCTAGCGATTCTGCACTTG 59.408 52.381 9.55 0.00 37.31 3.16
81 82 1.472376 GGAGCTAGCGATTCTGCACTT 60.472 52.381 9.55 0.00 37.31 3.16
82 83 0.103937 GGAGCTAGCGATTCTGCACT 59.896 55.000 9.55 0.00 37.31 4.40
83 84 0.878086 GGGAGCTAGCGATTCTGCAC 60.878 60.000 9.55 0.00 37.31 4.57
84 85 1.443407 GGGAGCTAGCGATTCTGCA 59.557 57.895 9.55 0.00 37.31 4.41
85 86 1.301322 GGGGAGCTAGCGATTCTGC 60.301 63.158 9.55 0.00 0.00 4.26
86 87 0.465705 TTGGGGAGCTAGCGATTCTG 59.534 55.000 9.55 0.00 0.00 3.02
87 88 1.204146 TTTGGGGAGCTAGCGATTCT 58.796 50.000 9.55 0.00 0.00 2.40
88 89 2.262423 ATTTGGGGAGCTAGCGATTC 57.738 50.000 9.55 1.00 0.00 2.52
89 90 2.736670 AATTTGGGGAGCTAGCGATT 57.263 45.000 9.55 0.00 0.00 3.34
90 91 2.736670 AAATTTGGGGAGCTAGCGAT 57.263 45.000 9.55 0.00 0.00 4.58
91 92 2.507407 AAAATTTGGGGAGCTAGCGA 57.493 45.000 9.55 0.00 0.00 4.93
92 93 3.013921 TGTAAAATTTGGGGAGCTAGCG 58.986 45.455 9.55 0.00 0.00 4.26
93 94 5.047306 AGTTTGTAAAATTTGGGGAGCTAGC 60.047 40.000 6.62 6.62 0.00 3.42
94 95 6.590234 AGTTTGTAAAATTTGGGGAGCTAG 57.410 37.500 0.00 0.00 0.00 3.42
95 96 6.152154 GCTAGTTTGTAAAATTTGGGGAGCTA 59.848 38.462 0.00 0.00 0.00 3.32
96 97 5.047306 GCTAGTTTGTAAAATTTGGGGAGCT 60.047 40.000 0.00 0.00 0.00 4.09
97 98 5.168569 GCTAGTTTGTAAAATTTGGGGAGC 58.831 41.667 0.00 0.00 0.00 4.70
98 99 6.208599 TCTGCTAGTTTGTAAAATTTGGGGAG 59.791 38.462 0.00 0.00 0.00 4.30
99 100 6.071984 TCTGCTAGTTTGTAAAATTTGGGGA 58.928 36.000 0.00 0.00 0.00 4.81
100 101 6.339587 TCTGCTAGTTTGTAAAATTTGGGG 57.660 37.500 0.00 0.00 0.00 4.96
101 102 8.831715 ATTTCTGCTAGTTTGTAAAATTTGGG 57.168 30.769 0.00 0.00 0.00 4.12
119 120 6.843069 TTTTTAGGTGAAGCAAATTTCTGC 57.157 33.333 0.00 0.00 42.97 4.26
152 153 9.786105 CAAATTTTGTTTAGGTGAAGCAATTTT 57.214 25.926 0.78 0.00 37.98 1.82
153 154 7.914871 GCAAATTTTGTTTAGGTGAAGCAATTT 59.085 29.630 10.65 0.00 37.98 1.82
154 155 7.282901 AGCAAATTTTGTTTAGGTGAAGCAATT 59.717 29.630 10.65 0.00 37.98 2.32
155 156 6.767423 AGCAAATTTTGTTTAGGTGAAGCAAT 59.233 30.769 10.65 0.00 37.98 3.56
156 157 6.112058 AGCAAATTTTGTTTAGGTGAAGCAA 58.888 32.000 10.65 0.00 36.57 3.91
157 158 5.669477 AGCAAATTTTGTTTAGGTGAAGCA 58.331 33.333 10.65 0.00 0.00 3.91
158 159 6.603237 AAGCAAATTTTGTTTAGGTGAAGC 57.397 33.333 9.17 0.00 32.08 3.86
169 170 8.829612 CCAGAACATTTTCTAAGCAAATTTTGT 58.170 29.630 10.65 0.00 40.34 2.83
170 171 9.044150 TCCAGAACATTTTCTAAGCAAATTTTG 57.956 29.630 4.72 4.72 40.34 2.44
171 172 9.612066 TTCCAGAACATTTTCTAAGCAAATTTT 57.388 25.926 0.00 0.00 40.34 1.82
172 173 9.612066 TTTCCAGAACATTTTCTAAGCAAATTT 57.388 25.926 0.00 0.00 40.34 1.82
173 174 9.264719 CTTTCCAGAACATTTTCTAAGCAAATT 57.735 29.630 0.00 0.00 40.34 1.82
174 175 8.424133 ACTTTCCAGAACATTTTCTAAGCAAAT 58.576 29.630 0.00 0.00 40.34 2.32
175 176 7.781056 ACTTTCCAGAACATTTTCTAAGCAAA 58.219 30.769 0.00 0.00 40.34 3.68
176 177 7.346751 ACTTTCCAGAACATTTTCTAAGCAA 57.653 32.000 0.00 0.00 40.34 3.91
177 178 6.959639 ACTTTCCAGAACATTTTCTAAGCA 57.040 33.333 0.00 0.00 40.34 3.91
178 179 8.324163 TCTACTTTCCAGAACATTTTCTAAGC 57.676 34.615 0.00 0.00 40.34 3.09
190 191 5.524971 TTCGACAGTTCTACTTTCCAGAA 57.475 39.130 0.00 0.00 0.00 3.02
191 192 5.524971 TTTCGACAGTTCTACTTTCCAGA 57.475 39.130 0.00 0.00 0.00 3.86
192 193 6.598753 TTTTTCGACAGTTCTACTTTCCAG 57.401 37.500 0.00 0.00 0.00 3.86
193 194 6.764085 TCATTTTTCGACAGTTCTACTTTCCA 59.236 34.615 0.00 0.00 0.00 3.53
194 195 7.186021 TCATTTTTCGACAGTTCTACTTTCC 57.814 36.000 0.00 0.00 0.00 3.13
198 199 9.268268 TGTTTATCATTTTTCGACAGTTCTACT 57.732 29.630 0.00 0.00 0.00 2.57
199 200 9.872757 TTGTTTATCATTTTTCGACAGTTCTAC 57.127 29.630 0.00 0.00 0.00 2.59
201 202 8.621286 ACTTGTTTATCATTTTTCGACAGTTCT 58.379 29.630 0.00 0.00 0.00 3.01
202 203 8.782533 ACTTGTTTATCATTTTTCGACAGTTC 57.217 30.769 0.00 0.00 0.00 3.01
203 204 9.878599 CTACTTGTTTATCATTTTTCGACAGTT 57.121 29.630 0.00 0.00 0.00 3.16
204 205 9.268268 TCTACTTGTTTATCATTTTTCGACAGT 57.732 29.630 0.00 0.00 0.00 3.55
214 215 9.574516 AGGTTGACTTTCTACTTGTTTATCATT 57.425 29.630 0.00 0.00 0.00 2.57
219 220 9.706691 CTCATAGGTTGACTTTCTACTTGTTTA 57.293 33.333 0.00 0.00 0.00 2.01
220 221 7.173390 GCTCATAGGTTGACTTTCTACTTGTTT 59.827 37.037 0.00 0.00 0.00 2.83
221 222 6.651225 GCTCATAGGTTGACTTTCTACTTGTT 59.349 38.462 0.00 0.00 0.00 2.83
222 223 6.166982 GCTCATAGGTTGACTTTCTACTTGT 58.833 40.000 0.00 0.00 0.00 3.16
223 224 5.582665 GGCTCATAGGTTGACTTTCTACTTG 59.417 44.000 0.00 0.00 0.00 3.16
224 225 5.338463 GGGCTCATAGGTTGACTTTCTACTT 60.338 44.000 0.00 0.00 0.00 2.24
225 226 4.162509 GGGCTCATAGGTTGACTTTCTACT 59.837 45.833 0.00 0.00 0.00 2.57
226 227 4.162509 AGGGCTCATAGGTTGACTTTCTAC 59.837 45.833 0.00 0.00 0.00 2.59
227 228 4.162320 CAGGGCTCATAGGTTGACTTTCTA 59.838 45.833 0.00 0.00 0.00 2.10
228 229 3.054802 CAGGGCTCATAGGTTGACTTTCT 60.055 47.826 0.00 0.00 0.00 2.52
229 230 3.055094 TCAGGGCTCATAGGTTGACTTTC 60.055 47.826 0.00 0.00 0.00 2.62
230 231 2.912956 TCAGGGCTCATAGGTTGACTTT 59.087 45.455 0.00 0.00 0.00 2.66
231 232 2.551270 TCAGGGCTCATAGGTTGACTT 58.449 47.619 0.00 0.00 0.00 3.01
232 233 2.254152 TCAGGGCTCATAGGTTGACT 57.746 50.000 0.00 0.00 0.00 3.41
233 234 2.703007 AGATCAGGGCTCATAGGTTGAC 59.297 50.000 0.00 0.00 0.00 3.18
234 235 2.702478 CAGATCAGGGCTCATAGGTTGA 59.298 50.000 0.00 0.00 0.00 3.18
235 236 2.224475 CCAGATCAGGGCTCATAGGTTG 60.224 54.545 0.00 0.00 0.00 3.77
236 237 2.053244 CCAGATCAGGGCTCATAGGTT 58.947 52.381 0.00 0.00 0.00 3.50
237 238 1.061812 ACCAGATCAGGGCTCATAGGT 60.062 52.381 9.23 0.00 0.00 3.08
238 239 1.347050 CACCAGATCAGGGCTCATAGG 59.653 57.143 9.23 0.00 0.00 2.57
239 240 2.045524 ACACCAGATCAGGGCTCATAG 58.954 52.381 9.23 0.00 0.00 2.23
240 241 1.764723 CACACCAGATCAGGGCTCATA 59.235 52.381 9.23 0.00 0.00 2.15
241 242 0.545171 CACACCAGATCAGGGCTCAT 59.455 55.000 9.23 0.00 0.00 2.90
242 243 0.837691 ACACACCAGATCAGGGCTCA 60.838 55.000 9.23 0.00 0.00 4.26
243 244 0.392193 CACACACCAGATCAGGGCTC 60.392 60.000 9.23 0.00 0.00 4.70
244 245 1.130054 ACACACACCAGATCAGGGCT 61.130 55.000 9.23 0.00 0.00 5.19
245 246 0.250901 AACACACACCAGATCAGGGC 60.251 55.000 9.23 0.00 0.00 5.19
246 247 1.527034 CAACACACACCAGATCAGGG 58.473 55.000 9.23 5.50 0.00 4.45
247 248 0.877071 GCAACACACACCAGATCAGG 59.123 55.000 1.93 1.93 0.00 3.86
248 249 0.877071 GGCAACACACACCAGATCAG 59.123 55.000 0.00 0.00 0.00 2.90
249 250 0.884259 CGGCAACACACACCAGATCA 60.884 55.000 0.00 0.00 0.00 2.92
250 251 1.577328 CCGGCAACACACACCAGATC 61.577 60.000 0.00 0.00 0.00 2.75
251 252 1.600636 CCGGCAACACACACCAGAT 60.601 57.895 0.00 0.00 0.00 2.90
252 253 2.203139 CCGGCAACACACACCAGA 60.203 61.111 0.00 0.00 0.00 3.86
253 254 2.058829 GAACCGGCAACACACACCAG 62.059 60.000 0.00 0.00 0.00 4.00
254 255 2.044848 AACCGGCAACACACACCA 60.045 55.556 0.00 0.00 0.00 4.17
255 256 0.533308 TAGAACCGGCAACACACACC 60.533 55.000 0.00 0.00 0.00 4.16
256 257 1.196808 CATAGAACCGGCAACACACAC 59.803 52.381 0.00 0.00 0.00 3.82
257 258 1.518325 CATAGAACCGGCAACACACA 58.482 50.000 0.00 0.00 0.00 3.72
258 259 0.168128 GCATAGAACCGGCAACACAC 59.832 55.000 0.00 0.00 0.00 3.82
259 260 0.958382 GGCATAGAACCGGCAACACA 60.958 55.000 0.00 0.00 0.00 3.72
260 261 1.654023 GGGCATAGAACCGGCAACAC 61.654 60.000 0.00 0.00 0.00 3.32
261 262 1.377987 GGGCATAGAACCGGCAACA 60.378 57.895 0.00 0.00 0.00 3.33
262 263 2.469516 CGGGCATAGAACCGGCAAC 61.470 63.158 0.00 0.00 46.08 4.17
263 264 2.124901 CGGGCATAGAACCGGCAA 60.125 61.111 0.00 0.00 46.08 4.52
268 269 1.090052 GTGTCTGCGGGCATAGAACC 61.090 60.000 1.59 0.00 0.00 3.62
269 270 1.421410 CGTGTCTGCGGGCATAGAAC 61.421 60.000 1.59 0.00 0.00 3.01
270 271 1.153647 CGTGTCTGCGGGCATAGAA 60.154 57.895 1.59 0.00 0.00 2.10
271 272 2.494445 CGTGTCTGCGGGCATAGA 59.506 61.111 1.59 0.00 0.00 1.98
272 273 2.349969 TAGCGTGTCTGCGGGCATAG 62.350 60.000 1.59 1.67 40.67 2.23
273 274 2.349969 CTAGCGTGTCTGCGGGCATA 62.350 60.000 1.59 0.00 40.67 3.14
274 275 3.723235 CTAGCGTGTCTGCGGGCAT 62.723 63.158 1.59 0.00 40.67 4.40
275 276 4.435436 CTAGCGTGTCTGCGGGCA 62.435 66.667 0.00 0.00 40.67 5.36
277 278 2.771639 TAGCTAGCGTGTCTGCGGG 61.772 63.158 9.55 0.00 40.67 6.13
278 279 1.586564 GTAGCTAGCGTGTCTGCGG 60.587 63.158 9.55 0.00 40.67 5.69
279 280 0.656259 TAGTAGCTAGCGTGTCTGCG 59.344 55.000 9.55 0.00 40.67 5.18
280 281 2.605823 CCATAGTAGCTAGCGTGTCTGC 60.606 54.545 9.55 0.00 0.00 4.26
281 282 2.605823 GCCATAGTAGCTAGCGTGTCTG 60.606 54.545 9.55 5.92 0.00 3.51
282 283 1.609555 GCCATAGTAGCTAGCGTGTCT 59.390 52.381 9.55 8.87 0.00 3.41
283 284 1.663445 CGCCATAGTAGCTAGCGTGTC 60.663 57.143 9.55 1.34 41.78 3.67
284 285 0.311165 CGCCATAGTAGCTAGCGTGT 59.689 55.000 9.55 0.00 41.78 4.49
285 286 3.093566 CGCCATAGTAGCTAGCGTG 57.906 57.895 9.55 4.77 41.78 5.34
288 289 0.033504 TTGGCGCCATAGTAGCTAGC 59.966 55.000 33.25 6.62 0.00 3.42
289 290 1.341531 AGTTGGCGCCATAGTAGCTAG 59.658 52.381 33.25 0.00 0.00 3.42
290 291 1.068588 CAGTTGGCGCCATAGTAGCTA 59.931 52.381 33.25 10.05 0.00 3.32
291 292 0.179073 CAGTTGGCGCCATAGTAGCT 60.179 55.000 33.25 17.77 0.00 3.32
292 293 1.160329 CCAGTTGGCGCCATAGTAGC 61.160 60.000 33.25 15.80 0.00 3.58
293 294 2.992089 CCAGTTGGCGCCATAGTAG 58.008 57.895 33.25 18.00 0.00 2.57
304 305 0.179056 CGGTACCCTATGCCAGTTGG 60.179 60.000 6.25 0.00 38.53 3.77
305 306 0.539986 ACGGTACCCTATGCCAGTTG 59.460 55.000 6.25 0.00 30.96 3.16
306 307 0.539986 CACGGTACCCTATGCCAGTT 59.460 55.000 6.25 0.00 30.96 3.16
307 308 0.616679 ACACGGTACCCTATGCCAGT 60.617 55.000 6.25 0.00 30.96 4.00
308 309 0.539986 AACACGGTACCCTATGCCAG 59.460 55.000 6.25 0.00 30.96 4.85
309 310 0.538118 GAACACGGTACCCTATGCCA 59.462 55.000 6.25 0.00 30.96 4.92
310 311 0.538118 TGAACACGGTACCCTATGCC 59.462 55.000 6.25 0.00 0.00 4.40
311 312 2.614829 ATGAACACGGTACCCTATGC 57.385 50.000 6.25 0.00 0.00 3.14
312 313 4.258543 ACAAATGAACACGGTACCCTATG 58.741 43.478 6.25 5.11 0.00 2.23
313 314 4.510571 GACAAATGAACACGGTACCCTAT 58.489 43.478 6.25 0.00 0.00 2.57
314 315 3.306919 GGACAAATGAACACGGTACCCTA 60.307 47.826 6.25 0.00 0.00 3.53
315 316 2.551504 GGACAAATGAACACGGTACCCT 60.552 50.000 6.25 0.00 0.00 4.34
316 317 1.808343 GGACAAATGAACACGGTACCC 59.192 52.381 6.25 0.00 0.00 3.69
317 318 2.496111 TGGACAAATGAACACGGTACC 58.504 47.619 0.16 0.16 0.00 3.34
318 319 6.431198 AATATGGACAAATGAACACGGTAC 57.569 37.500 0.00 0.00 0.00 3.34
319 320 7.040340 ACAAAATATGGACAAATGAACACGGTA 60.040 33.333 0.00 0.00 0.00 4.02
320 321 5.975693 AAATATGGACAAATGAACACGGT 57.024 34.783 0.00 0.00 0.00 4.83
328 329 8.011106 GCAAGTTTGACAAAATATGGACAAATG 58.989 33.333 1.27 0.00 39.57 2.32
329 330 7.714377 TGCAAGTTTGACAAAATATGGACAAAT 59.286 29.630 1.27 0.00 39.57 2.32
334 335 8.530311 ACATATGCAAGTTTGACAAAATATGGA 58.470 29.630 22.03 14.99 0.00 3.41
343 344 5.295431 GCAGTACATATGCAAGTTTGACA 57.705 39.130 1.58 0.00 43.31 3.58
359 360 5.469479 AGGCATACAAAACAAATGCAGTAC 58.531 37.500 8.59 0.00 46.18 2.73
362 363 4.751098 ACAAGGCATACAAAACAAATGCAG 59.249 37.500 8.59 1.33 46.18 4.41
363 364 4.701765 ACAAGGCATACAAAACAAATGCA 58.298 34.783 8.59 0.00 46.18 3.96
364 365 6.777526 TTACAAGGCATACAAAACAAATGC 57.222 33.333 0.00 0.00 44.16 3.56
365 366 7.235777 GCATTACAAGGCATACAAAACAAATG 58.764 34.615 0.00 0.00 35.46 2.32
366 367 6.371271 GGCATTACAAGGCATACAAAACAAAT 59.629 34.615 0.71 0.00 37.46 2.32
368 369 5.221521 TGGCATTACAAGGCATACAAAACAA 60.222 36.000 0.71 0.00 37.46 2.83
370 371 4.815269 TGGCATTACAAGGCATACAAAAC 58.185 39.130 0.71 0.00 37.46 2.43
379 381 2.021457 ACGGTATTGGCATTACAAGGC 58.979 47.619 18.23 3.57 33.23 4.35
387 389 1.601903 CGCATGTTACGGTATTGGCAT 59.398 47.619 0.00 0.00 0.00 4.40
396 398 5.570206 ACGTATTATGTATCGCATGTTACGG 59.430 40.000 18.47 8.53 44.60 4.02
436 438 8.976197 AAAGCGCAGTTTTAGCTAGTAGCGTA 62.976 42.308 16.35 5.87 39.66 4.42
439 441 2.541556 AGCGCAGTTTTAGCTAGTAGC 58.458 47.619 14.62 14.62 42.84 3.58
444 446 3.434299 GGTGTAAAGCGCAGTTTTAGCTA 59.566 43.478 11.47 0.00 43.40 3.32
448 450 1.532007 CCGGTGTAAAGCGCAGTTTTA 59.468 47.619 11.47 2.79 39.66 1.52
481 484 0.309612 TTTGAAGGCGTCCTTTTCGC 59.690 50.000 11.62 1.63 44.82 4.70
498 501 0.818040 GAGCATCCCGGCCGTATTTT 60.818 55.000 26.12 4.55 0.00 1.82
511 514 1.596477 GATGGCACCGAGGAGCATC 60.596 63.158 13.20 9.96 33.44 3.91
512 515 2.507944 GATGGCACCGAGGAGCAT 59.492 61.111 13.20 5.31 33.44 3.79
513 516 4.147449 CGATGGCACCGAGGAGCA 62.147 66.667 13.20 0.85 33.44 4.26
515 518 4.899239 GGCGATGGCACCGAGGAG 62.899 72.222 4.84 0.00 42.47 3.69
517 520 4.899239 GAGGCGATGGCACCGAGG 62.899 72.222 4.84 0.00 42.47 4.63
518 521 4.899239 GGAGGCGATGGCACCGAG 62.899 72.222 4.84 0.00 42.47 4.63
520 523 4.473520 AAGGAGGCGATGGCACCG 62.474 66.667 0.00 0.00 42.47 4.94
521 524 2.825836 CAAGGAGGCGATGGCACC 60.826 66.667 1.01 4.58 42.47 5.01
522 525 2.109126 GTCAAGGAGGCGATGGCAC 61.109 63.158 1.01 0.00 42.47 5.01
523 526 2.268920 GTCAAGGAGGCGATGGCA 59.731 61.111 1.01 0.00 42.47 4.92
524 527 2.514824 GGTCAAGGAGGCGATGGC 60.515 66.667 0.00 0.00 38.90 4.40
525 528 2.202932 CGGTCAAGGAGGCGATGG 60.203 66.667 0.00 0.00 0.00 3.51
526 529 1.811266 CACGGTCAAGGAGGCGATG 60.811 63.158 0.00 0.00 0.00 3.84
552 555 0.742990 CGGACAGCGAGAGTCTCTCT 60.743 60.000 24.19 12.62 44.28 3.10
553 556 0.741574 TCGGACAGCGAGAGTCTCTC 60.742 60.000 18.52 18.52 40.06 3.20
554 557 0.742990 CTCGGACAGCGAGAGTCTCT 60.743 60.000 17.91 0.70 36.29 3.10
555 558 1.719117 CTCGGACAGCGAGAGTCTC 59.281 63.158 10.33 10.33 36.29 3.36
619 622 1.868251 CGTAGCTCTCGTTGGACGC 60.868 63.158 0.00 0.00 42.21 5.19
620 623 4.361827 CGTAGCTCTCGTTGGACG 57.638 61.111 0.00 0.00 44.19 4.79
637 641 1.610886 GCGGGTAGATAAATGAGGGGC 60.611 57.143 0.00 0.00 0.00 5.80
638 642 1.337823 CGCGGGTAGATAAATGAGGGG 60.338 57.143 0.00 0.00 0.00 4.79
639 643 1.343465 ACGCGGGTAGATAAATGAGGG 59.657 52.381 12.47 0.00 0.00 4.30
654 658 2.502123 CGATGGTGTACGAACGCGG 61.502 63.158 12.47 0.00 43.17 6.46
658 662 0.844503 GATCGCGATGGTGTACGAAC 59.155 55.000 29.09 3.59 38.15 3.95
678 682 1.377202 CATGGGAGACGGTGGTTGG 60.377 63.158 0.00 0.00 0.00 3.77
695 709 5.865013 TGTAGAGATTCGCGTAAACAAATCA 59.135 36.000 15.57 2.33 31.90 2.57
711 725 2.871182 TCTTTCGCGCATGTAGAGAT 57.129 45.000 8.75 0.00 0.00 2.75
712 726 2.099098 TGATCTTTCGCGCATGTAGAGA 59.901 45.455 8.75 1.63 0.00 3.10
713 727 2.463876 TGATCTTTCGCGCATGTAGAG 58.536 47.619 8.75 0.00 0.00 2.43
714 728 2.577449 TGATCTTTCGCGCATGTAGA 57.423 45.000 8.75 4.49 0.00 2.59
715 729 3.245990 TGATTGATCTTTCGCGCATGTAG 59.754 43.478 8.75 0.00 0.00 2.74
716 730 3.194062 TGATTGATCTTTCGCGCATGTA 58.806 40.909 8.75 0.00 0.00 2.29
717 731 2.009051 TGATTGATCTTTCGCGCATGT 58.991 42.857 8.75 0.00 0.00 3.21
718 732 2.742954 TGATTGATCTTTCGCGCATG 57.257 45.000 8.75 0.00 0.00 4.06
719 733 3.187227 GGTATGATTGATCTTTCGCGCAT 59.813 43.478 8.75 0.00 0.00 4.73
720 734 2.543848 GGTATGATTGATCTTTCGCGCA 59.456 45.455 8.75 0.00 0.00 6.09
721 735 2.410262 CGGTATGATTGATCTTTCGCGC 60.410 50.000 0.00 0.00 0.00 6.86
722 736 2.155732 CCGGTATGATTGATCTTTCGCG 59.844 50.000 0.00 0.00 0.00 5.87
723 737 3.131396 ACCGGTATGATTGATCTTTCGC 58.869 45.455 4.49 0.00 0.00 4.70
725 739 5.694006 CAGAGACCGGTATGATTGATCTTTC 59.306 44.000 6.38 0.00 0.00 2.62
726 740 5.129485 ACAGAGACCGGTATGATTGATCTTT 59.871 40.000 6.38 0.00 0.00 2.52
727 741 4.651503 ACAGAGACCGGTATGATTGATCTT 59.348 41.667 6.38 0.00 0.00 2.40
728 742 4.219115 ACAGAGACCGGTATGATTGATCT 58.781 43.478 6.38 0.00 0.00 2.75
729 743 4.551388 GACAGAGACCGGTATGATTGATC 58.449 47.826 6.38 0.00 0.00 2.92
730 744 3.004839 CGACAGAGACCGGTATGATTGAT 59.995 47.826 6.38 0.00 0.00 2.57
731 745 2.357952 CGACAGAGACCGGTATGATTGA 59.642 50.000 6.38 0.00 0.00 2.57
732 746 2.357952 TCGACAGAGACCGGTATGATTG 59.642 50.000 6.38 4.86 0.00 2.67
733 747 2.651455 TCGACAGAGACCGGTATGATT 58.349 47.619 6.38 0.00 0.00 2.57
734 748 2.343484 TCGACAGAGACCGGTATGAT 57.657 50.000 6.38 0.00 0.00 2.45
735 749 2.118313 TTCGACAGAGACCGGTATGA 57.882 50.000 6.38 0.00 0.00 2.15
736 750 2.163815 AGTTTCGACAGAGACCGGTATG 59.836 50.000 6.38 9.59 32.42 2.39
737 751 2.163815 CAGTTTCGACAGAGACCGGTAT 59.836 50.000 7.34 2.95 32.42 2.73
738 752 1.538512 CAGTTTCGACAGAGACCGGTA 59.461 52.381 7.34 0.00 32.42 4.02
743 757 1.009389 CCGGCAGTTTCGACAGAGAC 61.009 60.000 0.00 0.00 0.00 3.36
746 760 2.357034 GCCGGCAGTTTCGACAGA 60.357 61.111 24.80 0.00 0.00 3.41
848 873 3.192001 TGGACGGGATCTTATATACGCAC 59.808 47.826 0.00 0.00 0.00 5.34
967 1003 2.722487 CGACCCGGTGCTAGCTAG 59.278 66.667 16.84 16.84 0.00 3.42
968 1004 2.831742 CCGACCCGGTGCTAGCTA 60.832 66.667 17.23 0.00 42.73 3.32
994 1043 2.894126 GCCTCGAAATCCTCATCCTCTA 59.106 50.000 0.00 0.00 0.00 2.43
1508 1574 3.274288 GCAGCAGTAGAGCAGGTAAAAT 58.726 45.455 0.00 0.00 36.85 1.82
1522 1589 3.344703 TGCTTGTATTGGCAGCAGT 57.655 47.368 0.00 0.00 34.22 4.40
1538 1605 3.121030 ACCGCTGCGTCATTCTGC 61.121 61.111 21.59 0.00 0.00 4.26
1540 1608 3.121030 GCACCGCTGCGTCATTCT 61.121 61.111 21.59 0.00 32.44 2.40
1585 1653 1.000060 GTTCCAGTGTAGTGTGCGGTA 60.000 52.381 0.00 0.00 0.00 4.02
1586 1654 0.249741 GTTCCAGTGTAGTGTGCGGT 60.250 55.000 0.00 0.00 0.00 5.68
1587 1655 0.033504 AGTTCCAGTGTAGTGTGCGG 59.966 55.000 0.00 0.00 0.00 5.69
1589 1657 2.240493 ACAGTTCCAGTGTAGTGTGC 57.760 50.000 3.01 0.00 28.20 4.57
1590 1658 6.223852 AGAAATACAGTTCCAGTGTAGTGTG 58.776 40.000 11.32 0.00 37.43 3.82
1591 1659 6.420913 AGAAATACAGTTCCAGTGTAGTGT 57.579 37.500 7.77 7.77 37.43 3.55
1592 1660 7.375834 TGTAGAAATACAGTTCCAGTGTAGTG 58.624 38.462 0.00 0.00 37.43 2.74
1596 1664 7.719633 ACAAATGTAGAAATACAGTTCCAGTGT 59.280 33.333 0.00 0.00 36.30 3.55
1597 1665 8.099364 ACAAATGTAGAAATACAGTTCCAGTG 57.901 34.615 0.00 0.00 36.30 3.66
1598 1666 7.117812 CGACAAATGTAGAAATACAGTTCCAGT 59.882 37.037 0.00 0.00 36.30 4.00
1599 1667 7.117812 ACGACAAATGTAGAAATACAGTTCCAG 59.882 37.037 0.54 0.00 36.30 3.86
1600 1668 6.932400 ACGACAAATGTAGAAATACAGTTCCA 59.068 34.615 0.54 0.00 36.30 3.53
1601 1669 7.360575 ACGACAAATGTAGAAATACAGTTCC 57.639 36.000 0.54 0.00 36.30 3.62
1602 1670 7.955864 GGAACGACAAATGTAGAAATACAGTTC 59.044 37.037 0.54 3.72 36.30 3.01
1603 1671 7.442969 TGGAACGACAAATGTAGAAATACAGTT 59.557 33.333 0.54 0.00 38.57 3.16
1604 1672 6.932400 TGGAACGACAAATGTAGAAATACAGT 59.068 34.615 0.54 0.00 32.97 3.55
1605 1673 7.359262 TGGAACGACAAATGTAGAAATACAG 57.641 36.000 0.54 0.00 32.97 2.74
1661 1729 9.161629 TCTCTATTGATTTCGTAGCAATGAAAA 57.838 29.630 11.92 0.00 42.42 2.29
1665 1733 8.986847 AGATTCTCTATTGATTTCGTAGCAATG 58.013 33.333 11.92 5.03 34.41 2.82
1666 1734 8.986847 CAGATTCTCTATTGATTTCGTAGCAAT 58.013 33.333 8.37 8.37 36.35 3.56
1669 1737 7.865385 AGACAGATTCTCTATTGATTTCGTAGC 59.135 37.037 0.00 0.00 0.00 3.58
1670 1738 9.743057 AAGACAGATTCTCTATTGATTTCGTAG 57.257 33.333 0.00 0.00 31.02 3.51
1701 1788 6.254804 GCTTGTAATCAACGAAAACCTTTTGT 59.745 34.615 0.00 0.00 0.00 2.83
1703 1790 6.569780 AGCTTGTAATCAACGAAAACCTTTT 58.430 32.000 0.00 0.00 0.00 2.27
1768 1855 4.862018 ACACAAATTGTCACCAAAAAGTCG 59.138 37.500 0.00 0.00 29.79 4.18
1771 1858 8.195617 ACATTACACAAATTGTCACCAAAAAG 57.804 30.769 0.00 0.00 39.91 2.27
1776 1863 4.889995 TGGACATTACACAAATTGTCACCA 59.110 37.500 0.00 0.00 39.91 4.17
1777 1864 5.446143 TGGACATTACACAAATTGTCACC 57.554 39.130 0.00 0.00 39.91 4.02
1801 1890 2.657143 TGCCTTTTCGTTTGTAAGGGT 58.343 42.857 0.00 0.00 39.05 4.34
1804 1893 4.359706 AGCTTTGCCTTTTCGTTTGTAAG 58.640 39.130 0.00 0.00 0.00 2.34
1809 1898 5.221244 ACAGAATAGCTTTGCCTTTTCGTTT 60.221 36.000 0.00 0.00 30.99 3.60
1820 1909 4.639310 AGATGCAAGGACAGAATAGCTTTG 59.361 41.667 0.00 0.00 0.00 2.77
1840 1929 3.921104 TGACTTGCCAGATCCTAGAGAT 58.079 45.455 0.00 0.00 38.17 2.75
1851 1940 1.866880 GCAGCTTGTTTGACTTGCCAG 60.867 52.381 0.00 0.00 0.00 4.85
1853 1942 0.102844 TGCAGCTTGTTTGACTTGCC 59.897 50.000 0.00 0.00 0.00 4.52
1866 1955 6.980593 TGTTTATTTAGTTGATGTTGCAGCT 58.019 32.000 1.17 0.00 33.73 4.24
1872 1961 7.377398 TGCAGCATGTTTATTTAGTTGATGTT 58.623 30.769 0.00 0.00 39.31 2.71
1889 1978 7.997107 AGTAATTTTGTCATATTGCAGCATG 57.003 32.000 0.00 3.78 40.87 4.06
1891 1980 8.504812 TCTAGTAATTTTGTCATATTGCAGCA 57.495 30.769 0.00 0.00 0.00 4.41
1909 1998 5.435686 AATGGGTGCACTCATTCTAGTAA 57.564 39.130 34.30 4.49 0.00 2.24
2001 2090 6.212955 CCAAAGTCGTGTATTTGTTCCATTT 58.787 36.000 0.00 0.00 35.16 2.32
2067 2159 5.295152 CGGTTAGTCTTAGAGTTGTGGTTT 58.705 41.667 0.00 0.00 0.00 3.27
2072 2164 5.536161 TGTTACCGGTTAGTCTTAGAGTTGT 59.464 40.000 15.04 0.00 0.00 3.32
2125 2217 1.408822 GGTGGGGCTTGGTCATTAGAG 60.409 57.143 0.00 0.00 0.00 2.43
2129 2221 1.077265 CTGGTGGGGCTTGGTCATT 59.923 57.895 0.00 0.00 0.00 2.57
2131 2223 2.776526 ACTGGTGGGGCTTGGTCA 60.777 61.111 0.00 0.00 0.00 4.02
2367 2462 6.763355 TGCAAAAATGTAGGATTTAGCCAAA 58.237 32.000 0.00 0.00 0.00 3.28
2379 2474 8.558700 AGCCAGTTTAAATTTGCAAAAATGTAG 58.441 29.630 17.19 2.78 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.