>input_sequence_81265
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--------ATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCGCACGCGCTG
CCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGGGGGACGGCAGCGGGGGCTACGGCGCCGGGGCCAGGATGAT
CTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAGGCCGCCTGGGCCGCCA
CGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTCGACTTCCTC
GTCGACGTCGTCAAGCCCAGGCCAGGTGACGACGGCGTCGGCGA---------CGGAGTCGGCCTCGCGCCGGCCGCCGG
TGTCCACGGCGGCGCGCTCGACTAG-------------------------------------------------------
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>chr1A_1_TraesCS1A01G354900
ATATTTTATCCGTCTAGTTCGAGAAAATTGCTCATGTATCCAAGTTAAAGGTACGCACATCTCGTTTTGTACTCTCAAAA
CAAGTGCAGAATCGCTAGCTCCCCAAATTTTACAAACTAGCAGAAATTTGCTTCACCTAAAAAAAGGCAAAAAAAATTGC
TTCACCTAAACAAAATTTGCTTAGAAAATGTTCTGGAAAGTAGAACTGTCGAAAAATGATAAACAAGTAGAAAGTCAACC
TATGAGCCCTGATCTGGTGTGTGTTGCCGGTTCTATGCCCGCAGACACGCTAGCTACTATGGCGCCAACTGGCATAGGGT
ACCGTGTTCATTTGTCCATATTTTGTCAAACTTGCATATGTACTGCATTTGT-TTTGTATGCCTTGTAATGCCAATACCG
TAACATGCGATACATAATACGTATATACAAGAATACATACGCTACTAGCTAAAACTGCGCTTTACACC-GGCGCTTACGC
ACCGCGAAAAGGACGCCTTCAAAATACGGCCGGGATGCTCCTCGGTGCCATCGCCTCCTTGACCGTGGATACGGAGAGAG
ACTCTCGCTGTCCGAGCGACAGGTGCGCTCACGCAGCGCAAGCACAAGGCTGCAAGCAACAGCG-TCCAACGAGAGCTAC
GCCCCTCATTTATCTACCCGCGTTCGTACACCATCGCGATCCCAACCACCGTCTCCCA----------TGATTTGTTTAC
GCGAATCTCTACATGCGCGAAAGATCAATCATACCGGTCTCTGTCGAAACTGCCGGCCCCGGCCACCTC---CGGTTGCG
GGCC------GGCCATGGACAGCAGCCGCCACGACCACGCGCTCCCTTCCTTGT--TCGCGGGTCAAACGGCGTGCGTAT
-----ATAAGATCCCGTCCATGGCCGCGCTCGATTGGAGGTTGCAC----CGTTCGTTTGTTTGCTATAGAACTCATAGC
TATAGATAGCT--CCTTGCACGGCGGCGAGAAGATTAGGTAGCTAGCTAGCACCGGGTCGGCGGCGAT------------
-CTAGAGGATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCGCACGCGCTG
CCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGGGGGACGGCAGCGGGGGCTACGGCGCCGGGGCCAGGATGAT
CTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAGGCCGCCTGGGCCGCCA
CGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTCGACTTCCTC
GTCGACGTCGTCAAGCCCAGGCCAGGTGACGACGGCGTCGGCGA---------CGGAGTCGGCCTCGCGCCGGCCGCCGG
TGTCCACGGCGGCGCGCTCGACTAGAAACTTGTCGGTGCAATGCATGC------ATGCATGCATGCGCGCTCGTCGTGGC
TTG--TGGAATCAAACTGTGCCGCGATTAATTGCACTAATTCCGTTCATGTTGATTTTACCTGCT-CTACTGCTGCCAAT
ACAAG-CAGAATGACGCAGCGGTGCAACTAGCACGATTTGATTAACTTGTACTACCGCACACTACACTGGAACTGTATTT
CTACATTTGTCGTTCCATTTCTACTGTTGTTAAGGAATATTTGAAGATTTTTCATTGCTACGAAATCAATAGAGAATCTG
T-------------------CTTTTATACAAAAGGTTTTCGTTGATTACAAGCTATTGGAGAGGTTCATGACATTTTTCT
ATGATGTAACCAAACGACTTTTTGGTGACAATT--TGTGTAATGTCCAAACCCTTACAAACGAAAAGGCAAAGCTATTCT
GTCCTTGCATCTCTAGGATCTGGCAAGTCAAACAAGCTGCAACATCAACTAAATAAACATGCTGCAATATGACAAAATTA
CTAGAATGAGTGCACCCATTTTCTAGAATATAGTAAACATATATTTGTAAAATTTGAATAATCCCGGAAAAACTCACACA
CACAAGAAGAAATGGAACAAATACACGACTTTGGGGGCTAAGGTATCACGAAACCACAACTCA---AGATTTTAACAAAA
ACCACAACTCTAAGACTAACCGGTAACAAAAACCCAAAATCTCCGGTTGAACACAACTCTAATGACCAAGCCCCACCAGT
CATAGACACAAAGTAGTGAAA---TGATTTTTAGCCTGAGCTCACATTAGAGTCGGCTTGAGCTAAGTCGACTAGACATG
AGCCGAACCGAGCCGAACTCAAAATGGACTTGCATAGATGTTTTATTAATCGGCTGAAGATTTTCCAAATTGATCGTTTA
AGATGTTTCGAGTTACTGTATTTTTTAAAGTTTATTGAAATCTTCAAATTTTTGAAGAAAATTTGGCTAAATCCTACATT
TTTGCAAATTTAAACTGGCTGA
>chr1D_322
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-CCGTGTTTGTTTGCCCATATTTGGTCAATGTTGCATATATATATTGTATTTGTTTGTATACCTTGTACTGCCAATAACA
GAATATGCCATCATACAAAATACTACGACCAGAATATAACACTACCAGCCAAAACTACGCTTTACACCAGGCGCTTACGT
ACCACGAAAAGGACGCCTTCCAAAT------------------------ATCGCCTGCGGCACCGTGGATACGG----AG
ACTCTCGGTGTCCGAGTGACAGGTGCGCTCACGCAACGGAAGCACAAGGCTGCAAGCAACAAACCTCCAACGAAAGCTAC
A--CCTCATTTCTCTACTCGCATTCGTACACCGTCGCGATCTCAACCACCGTCTCCAC----------GGATTTGTTTAC
GCGATCTCTA------------------------CGATCGCTGTCGAAACTGCCGGCCCCGGCCACCTC---CGTC-GCG
GGCC------GGCCATGGACAGCAGCCGCCACGACCACGCGCTCCCTTCCTTGTTCTCGCGGGTCAAACGGCATGCGTAT
-----ATAAGATCCTGTCCATGGCCGCGGTCGATTGGAGGTTGCAC----CGTTCGTTTGTT------AGAGCTCATAGC
TATAGATAGTT--CCTTGCACGGCGGCGAGAGGATTAGCTAGGACC-------------------------------GCG
GCGAGAGGATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCGCACGCACTG
CCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGGGGGACGGCAGCGGCGGCGACGGCGCCGGGGCCAGGATGAT
CTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAAGCCGCCTGGGCCGCCA
CGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTCGACTTCCTC
GTCGACGTCGTCAAGCCCAGGCCAGGTGACGATAGCGTCGGTGA---------CGGAGTCGGCCTCGCGCCGGCCGCCGG
TGCCCACGGCGGCGCGCTCGACTAGAAACTTGTCGGTGCAATGCATGC------ATGCATGCGTGCGCGCTCGTCGTGGC
TTG--TGGAATCAAACTGTGCCGCCATTAATTGCACTAATTCCGTTCATGTTGCTTTTACCTGCT-CTGCTGCTGCCAAT
ACAAAGCCGAATGACGCAGCGGTGCAACTAGCACGATTTGATTAACTTGTACACACTGGTACT----------TGTATTT
CTACATTTGTCGTTCCATTTCTACTGCTGTTAAGAAATATTTGAAGATCTTTTTTTAGCATCATATTTGAACTTATTTGT
GTACAAGGATGTTTCTATACCTTTTATGCGAAAGGTTTTCGTTGATTACAAGCTATTGGAGAGCTTCATGACATTTTTCT
ATGATGTAACCAAATGAGTTTTCTGTGACAATTTGTGTGTAATGTCCAACCCATTACCAACGAAAAGGTAAAGCTATTCT
GTCCTTGCCTCTCTAGGATAT-GCAAGTCAAACAGGCTGCGACATCAACTAAATAAATAGGCTGCAATATGACAAAAATA
CTAGAATGAGTGCACCCATTTTTCCA--------AAACATATATTTGTAAAATTTGAATAATCCCGGAAAAACTCACACA
CACAAGAAGCAATGGAACAAATACACGACTTTGGGGGCTAAGGTATCACGAAACCACAACTCTAGGAGATTTTAACAAGA
ACCGCAACTCTAAGACTAACCGGTAACAAAAACCCAAAATCTCCAGTTGAACACAAATCTGACGACCAAGCCCCACCAGT
CATAGACACAAAGTAGTGAAGAGTTGATTTTTAGCCTGAGCTCACATTAGAGTCGGCTTGAGCTAAGTCGACTAGACATG
AGCCGTACCGAGCCGAACTCAAAATGGACTTGCATAGATGTTTTATTAATCGGCTGAAGATTTTCCAAATTGATCATTTA
AGATGTTTTGAATTACTTTATATTTTAAAGTTTCTGGAAATCTTTGAATTTTTGAAGAAAAATTGGCTAAATCTTACATT
TTTTCAAATTTAAACTGGCTGA
>chr1B_577
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------------------ACAGGTGCACTCACGCAACGCAAGCACAAGGCTGCAAGCAACAAACCTCCAACGAAAGCTAC
A--CCTCATTTCTCTACTCGCATTCGTACACCATCTCGATCTCAACCACCGTCTCCCACGTCTTCCATGGATTTGTTTAC
GCGATCTCTA------------------------CGATCGCTGTCGAAGCTGCCGGCCCCGGCCACCTC---CGGTTGCG
GGCC------GGCCATGGACAGCAGCCGCCACGACCACGCGCTCCCTTCCTTGT--TCGCGGGTCAAACGGCATGCGTAT
-----ATAAGATCCCGTCCATGGCCGCGGTCGATTGGAGGTTGCAC----CGTTCATTTGTT------AGAGCTTAGC--
TAGCTAGCAGCAGCCTTGCACGGCGGCGAGAGGATTAGAC------------------CGGCGGCGAT------------
-CGAGCGGATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCGCACGCGCTG
CCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCCGCGGGGGACGGCAGCGGCGGCGACGGCGCCGGGGCGAGGATGAT
CTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAGGCCGCCTGGGCCGCCA
CGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTCGACTTCCTC
GTCGACGTCGTCAAGCCCAGGCTAGGTGACGATGGCGTCGATGCCGCGGACGGCGAAGGCCGGGTCGCGCCGGGCGCCGG
TGTCCACGGGGGCGCGCTCGACTAGAAACTTGTC-----AATGCATGCATCCGGATCCATGCATGCACGGTCGTTGTGGT
TAATATGGAATCAAACTGTACGGCGATTAATTGCACTAATTTCGTTCATGTTGTTTTTACTTGCTACTGCTGCCGCCAAT
TCAAA-CCGAATGACTCGCCGGTGCAACTAGCACGATTTAATTACCTTGTAC----------------------------
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>chr1A_643
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-----TCATTTATCTACTCCCATTCGTACACCATCGCGATCTCAACCACCGTCTCCTG----------CGGTTTGTTTAC
GCGATCTCTGTACGATCGATCGAT----------CGATCGCTGTCGAGACTGCCGGCCGCGGCCACGCCGCTGGGTTGCC
GGCCGGCTATGG-----------AGCCGCGACGGTCACGCGCTCCTTTGTTCGCG-----GGGTCAGGCGGCATGGGCAT
-----ATAAGGT-CCGTCCATGGCCGCGGTCGAATGAAGATTGCAC----CGTCCGTTTGTT------AGAGCTTAGCGC
TACCCAGCAGCCTAGC----------------------------AGCTAGCACGTACGGCGAGGCGACTGAACGACGGCG
GCCAGAGGATGAGGCTGCCGAGCCCGTACACGGGGGTGTTCAGGGGCGGGTCGACGGCGAGGACGGGGCCGCACGCTCTG
CCTCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGCGGGACGGCAGCGGCGGCGACGGCGCCGGGGCGAGGATGAT
CTCGTGCGAGGCGCCGGTGTTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCTGGGACGCCA
CGCTTGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCAACGTCTTCGACTTCCTC
GTCGACGTCGTCAAGGCCAGGCCGAGTGACGATGGCGTCAATGCTGGGGACGGTGAAGGCGGCGTCGCGCCGGCCGTAGG
TGTCCACGGCGGC-------------------------------------------------------------------
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>chr1D_643
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-----TCATTTATCTACTCCCATTCGTACACCATCGCGATCTCAACCACCGTCTCCTG----------CGGTTTGTTTAC
GTGATCTATGTA----CGATCGAT----------CGATCGCTGTCGAGACTGCCGGCCCCGGCCACGCCGCTCGGTTGCC
GGCCGGGCATGG-----------AGCCGCGACGGCCACGCGCTCCCTTGTTCGCG-----GGGTCAAGCGGCATGGGCAT
-----ATAAGGT-CCGCCCATGGCCGCGGTCGAATGAGAATTGCAC----CGTCCGTTTGTT------AGAGCTTAGC--
TACCCAGCAGC-----------------------------------CTAGCGCGTACGGCGAGGCGACTGAACGACGGCG
GCGAGAGGATGAGGCTGCCGAGCCCGTACTCGGGGGTGTTCAGGGGCGGGTCGACGGCGAGGACGGGGCCGCACGCGCTG
CCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGCGGGACGGCAGCGGCGGCGACAGCGCCGGGGCGAGGATGAT
CTCGTGCGAGGCGCTGGTGGTGTTCTCCAGTGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCTGGGACTCCA
CGCTTGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCAACGTCTTCGACTTCCTC
GTCGACGTCGTCAAGGCCAGGCCGAGTGACGATGGCGTCAGTGCTGGGGACGGCGAAGGCAGCGTCGCGCCCGCCGTAGG
TGTCCACGGCGGC-------------------------------------------------------------------
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>chr1B_643
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-----TCATTTATCTACTCCCATTCGTACACCATCGCGATCTCAACCACCGTCTCCTG----------CGGTTTGTTTAC
GTGATCTCTGTA----CCATCGAT----------CGATCGCTGTCGAGACTGCCGGCCGCGGCCACGCCGCTCGGTTGCC
GGCCGGCCATGGCCATGGGCAGCGGCCGCCACGGACACGCGCTCCCTTGTTCGCG-----GGGTCAAGCGGCATGGGCAT
ATGATATAAGGT-CCGTCCATGGCCGCGCTCGAATGAGAATTGCACCGCACGTCCGTTTGTT------AGAGCTTAGC--
TACCCAGCAGC-----------------------------------CTAGCACGCACGGCGAGGCGACTGAACGA---CG
GCGAGAGGATGAGGCTGCCGAGCCCGTACTCGGGGGTGTTCAGGGGCGGGTCGACTGCGAGGACGGGGCCGCACGCGCTG
CCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCCGCGCGGGACGGCAGTGGCGGCGACGGCGCCGGGGCCAGGATGAT
CTCGTGCGAGGCGCCGGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCTGGGACGCCA
CGCTTGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCATCAGGGACACCAACGTCTTCGACTTCCTC
GTCGACGTCGTCAAGGCCGGGCCGAGTGACGATGGTGTC-----------------------------------------
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>chr1D_740
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--------------------------------ACCGATCGCTGTCGAGACTGCCGGCCGCGGCCACGCCGCTCGGTTGCC
GGCCGGCCATGG-----------AGCCGCGACGGCCACGCGCTCCCTTGTTCGCG-----GGGTCAAGCGGCATGGG---
--GATATAAGGT-CCGTCAATGGCCGCGGTCGAATGAGAATTGCAC----CGTCCATTTGTT------AGAGCTTAGC--
TACCCAGCAGC-----------------------------------CTAGCACGTACGGCGAGGCGACTGAACGACGGCG
GCGAGAGGATGAGGCTGCCGAGCCCGTACTCGGGGGTGTTCAGGGGCGGGGCGACGGCGAGGACGGGCCCGCACGCGCTG
CCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGCGGGACGGCAGCGGCGGCGACGGCGCCGGGGCGAGGATGAT
CTCGTGCGAGGCGCCGGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCTGGGACGCCA
CGCTTGAGGGCCGGCGCCGGACCATGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCAACGTCTTTGACTTCCTC
GTCGACGTCGTCAAGGCCGGGCCGAGTGACGATGGCGTC-----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------SS----S--------S-----SS--------S--SSSSS-S-S---------S-------S--------S-S
S--S----S--SSSSS-S-SSSS--SSSSSSS-SSSSS--S----S---S------S----------------------S
---S----------------S----SSSSSSSSSSSSSSSSSSSSSSSS-------S-SSS-------------SSSS--
-------S--------S------------------S-------------------------SSS---------S------
SSS--------------S---S-------------------S--------------------------S-----------
----SSSSSSSSSSSSS-SSSSSSSSSSSSSS----S--S----------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------SSSSSS---S--------
---------S---------------------S------S---SS---------SSSSS----------------------
--S-----------------------------------------------------------------------------
-----------------------------------------------------S---S----------------------
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--------------------------------S--------S--------------------------------------
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-----------------------------------------------------S--------------S-----------
----S--S--------------------------------------------SSS-SSSS---SSSSSSSSSS-------
--------------------------S-------S-------------S---SS--SSS-SS-S--SSSS-SSS-S-SSS
S--------------------------S-S---------------------------------S----------------
--------------S--S----SS-------------------------S--S----S----------S-----------
--------S----------S-S------------S-----S----------------S-S-----------------S--
----------------------SSSSSSSSSSSS----------------------------------------------
---------S----------------------------------------------------S---------------S-
---S----------------------------------------S-----------S---S-S-----------------
--------------------S-----------------------------------------------------------
-----S---------------------------------------------------------------------S----
--------S--S-----S---S-----------S-S--------SS---------------S-----------S------
---S------------------
>forward_308
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------------------------------------------------GCTAGCTACTATGGCGCCAA------------
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>reverse_1655
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------------------------------------------------------CCGCACACTACACTGGAACT------
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