Multiple sequence alignment - TraesCS1A01G350900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G350900 chr1A 100.000 2738 0 0 1 2738 535444236 535446973 0.000000e+00 5057.0
1 TraesCS1A01G350900 chr1B 91.525 885 40 15 686 1557 596038212 596039074 0.000000e+00 1186.0
2 TraesCS1A01G350900 chr1B 92.991 799 31 8 1950 2738 596039456 596040239 0.000000e+00 1142.0
3 TraesCS1A01G350900 chr1B 95.385 65 2 1 558 622 596038135 596038198 4.820000e-18 102.0
4 TraesCS1A01G350900 chr1D 91.563 806 23 12 1950 2735 439306352 439307132 0.000000e+00 1070.0
5 TraesCS1A01G350900 chr1D 89.536 841 44 20 729 1553 439305175 439305987 0.000000e+00 1026.0
6 TraesCS1A01G350900 chr1D 89.032 465 42 6 163 622 439304199 439304659 3.960000e-158 568.0
7 TraesCS1A01G350900 chr3B 77.108 166 23 9 1384 1549 511071410 511071560 6.280000e-12 82.4
8 TraesCS1A01G350900 chr3A 96.000 50 2 0 1500 1549 512308376 512308425 6.280000e-12 82.4
9 TraesCS1A01G350900 chr3D 95.833 48 2 0 1502 1549 392054756 392054803 8.130000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G350900 chr1A 535444236 535446973 2737 False 5057 5057 100.000000 1 2738 1 chr1A.!!$F1 2737
1 TraesCS1A01G350900 chr1B 596038135 596040239 2104 False 810 1186 93.300333 558 2738 3 chr1B.!!$F1 2180
2 TraesCS1A01G350900 chr1D 439304199 439307132 2933 False 888 1070 90.043667 163 2735 3 chr1D.!!$F1 2572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 364 0.036671 GGCCAAGGCTACGTGTTAGT 60.037 55.0 11.4 0.0 41.6 2.24 F
1104 1558 0.100682 CGTCCGATCCTACTGTGGTG 59.899 60.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 2082 0.032403 CCACGTACAGACCGGTTCAA 59.968 55.0 9.42 0.0 0.0 2.69 R
2133 2721 0.109342 AGGTGTGCTGTGGAAGGAAG 59.891 55.0 0.00 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.464069 GAGGAGTTGCAACTAGTGATCT 57.536 45.455 31.20 19.66 39.88 2.75
22 23 4.180057 GAGGAGTTGCAACTAGTGATCTG 58.820 47.826 31.20 0.00 39.88 2.90
23 24 3.834813 AGGAGTTGCAACTAGTGATCTGA 59.165 43.478 31.20 0.00 39.88 3.27
24 25 4.469227 AGGAGTTGCAACTAGTGATCTGAT 59.531 41.667 31.20 5.64 39.88 2.90
25 26 5.046014 AGGAGTTGCAACTAGTGATCTGATT 60.046 40.000 31.20 5.42 39.88 2.57
26 27 5.645497 GGAGTTGCAACTAGTGATCTGATTT 59.355 40.000 31.20 4.94 39.88 2.17
27 28 6.402983 GGAGTTGCAACTAGTGATCTGATTTG 60.403 42.308 31.20 0.00 39.88 2.32
28 29 4.952262 TGCAACTAGTGATCTGATTTGC 57.048 40.909 13.02 13.02 35.99 3.68
29 30 4.582869 TGCAACTAGTGATCTGATTTGCT 58.417 39.130 18.08 8.58 36.20 3.91
30 31 5.733676 TGCAACTAGTGATCTGATTTGCTA 58.266 37.500 18.08 9.11 36.20 3.49
31 32 5.814188 TGCAACTAGTGATCTGATTTGCTAG 59.186 40.000 18.08 16.89 36.20 3.42
32 33 6.045318 GCAACTAGTGATCTGATTTGCTAGA 58.955 40.000 20.52 0.00 34.33 2.43
33 34 6.536582 GCAACTAGTGATCTGATTTGCTAGAA 59.463 38.462 20.52 0.00 34.33 2.10
34 35 7.465245 GCAACTAGTGATCTGATTTGCTAGAAC 60.465 40.741 20.52 11.42 34.33 3.01
35 36 6.578023 ACTAGTGATCTGATTTGCTAGAACC 58.422 40.000 20.52 0.00 32.64 3.62
36 37 4.437239 AGTGATCTGATTTGCTAGAACCG 58.563 43.478 0.00 0.00 0.00 4.44
37 38 3.557595 GTGATCTGATTTGCTAGAACCGG 59.442 47.826 0.00 0.00 0.00 5.28
38 39 2.024176 TCTGATTTGCTAGAACCGGC 57.976 50.000 0.00 0.00 0.00 6.13
39 40 1.277842 TCTGATTTGCTAGAACCGGCA 59.722 47.619 0.00 0.00 36.62 5.69
40 41 2.083774 CTGATTTGCTAGAACCGGCAA 58.916 47.619 0.00 0.00 45.06 4.52
43 44 2.240230 TTGCTAGAACCGGCAAACG 58.760 52.632 0.00 0.00 44.01 3.60
60 61 5.968387 CAAACGGTATTGCTAGAACTAGG 57.032 43.478 10.30 0.00 33.87 3.02
61 62 4.667519 AACGGTATTGCTAGAACTAGGG 57.332 45.455 10.30 0.00 33.87 3.53
62 63 3.907221 ACGGTATTGCTAGAACTAGGGA 58.093 45.455 10.30 0.00 33.87 4.20
63 64 3.890147 ACGGTATTGCTAGAACTAGGGAG 59.110 47.826 10.30 0.00 33.87 4.30
64 65 3.890147 CGGTATTGCTAGAACTAGGGAGT 59.110 47.826 10.30 0.00 37.59 3.85
65 66 4.261656 CGGTATTGCTAGAACTAGGGAGTG 60.262 50.000 10.30 0.00 35.52 3.51
66 67 4.894114 GGTATTGCTAGAACTAGGGAGTGA 59.106 45.833 10.30 0.00 35.52 3.41
67 68 5.010213 GGTATTGCTAGAACTAGGGAGTGAG 59.990 48.000 10.30 0.00 35.52 3.51
68 69 2.379972 TGCTAGAACTAGGGAGTGAGC 58.620 52.381 10.30 0.00 37.29 4.26
69 70 1.684450 GCTAGAACTAGGGAGTGAGCC 59.316 57.143 10.30 0.00 35.52 4.70
70 71 2.950874 GCTAGAACTAGGGAGTGAGCCA 60.951 54.545 10.30 0.00 35.52 4.75
71 72 2.327325 AGAACTAGGGAGTGAGCCAA 57.673 50.000 0.00 0.00 35.52 4.52
72 73 2.839228 AGAACTAGGGAGTGAGCCAAT 58.161 47.619 0.00 0.00 35.52 3.16
73 74 2.503356 AGAACTAGGGAGTGAGCCAATG 59.497 50.000 0.00 0.00 35.52 2.82
74 75 2.254152 ACTAGGGAGTGAGCCAATGA 57.746 50.000 0.00 0.00 33.41 2.57
75 76 2.769209 ACTAGGGAGTGAGCCAATGAT 58.231 47.619 0.00 0.00 33.41 2.45
76 77 2.437281 ACTAGGGAGTGAGCCAATGATG 59.563 50.000 0.00 0.00 33.41 3.07
77 78 1.588239 AGGGAGTGAGCCAATGATGA 58.412 50.000 0.00 0.00 0.00 2.92
78 79 2.133520 AGGGAGTGAGCCAATGATGAT 58.866 47.619 0.00 0.00 0.00 2.45
79 80 2.158652 AGGGAGTGAGCCAATGATGATG 60.159 50.000 0.00 0.00 0.00 3.07
80 81 2.228059 GGAGTGAGCCAATGATGATGG 58.772 52.381 0.00 0.00 41.08 3.51
81 82 2.228059 GAGTGAGCCAATGATGATGGG 58.772 52.381 0.00 0.00 38.44 4.00
82 83 1.133575 AGTGAGCCAATGATGATGGGG 60.134 52.381 0.00 0.00 38.44 4.96
83 84 0.468585 TGAGCCAATGATGATGGGGC 60.469 55.000 0.56 0.56 44.92 5.80
84 85 3.045142 GCCAATGATGATGGGGCG 58.955 61.111 0.00 0.00 38.44 6.13
85 86 3.045142 CCAATGATGATGGGGCGC 58.955 61.111 0.00 0.00 34.15 6.53
86 87 2.640989 CAATGATGATGGGGCGCG 59.359 61.111 0.00 0.00 0.00 6.86
87 88 1.893335 CAATGATGATGGGGCGCGA 60.893 57.895 12.10 0.00 0.00 5.87
88 89 1.598962 AATGATGATGGGGCGCGAG 60.599 57.895 12.10 0.00 0.00 5.03
89 90 2.043604 AATGATGATGGGGCGCGAGA 62.044 55.000 12.10 0.00 0.00 4.04
90 91 2.043604 ATGATGATGGGGCGCGAGAA 62.044 55.000 12.10 0.00 0.00 2.87
91 92 1.302033 GATGATGGGGCGCGAGAAT 60.302 57.895 12.10 0.00 0.00 2.40
92 93 1.572085 GATGATGGGGCGCGAGAATG 61.572 60.000 12.10 0.00 0.00 2.67
93 94 2.203070 GATGGGGCGCGAGAATGT 60.203 61.111 12.10 0.00 0.00 2.71
94 95 1.819632 GATGGGGCGCGAGAATGTT 60.820 57.895 12.10 0.00 0.00 2.71
95 96 2.051804 GATGGGGCGCGAGAATGTTG 62.052 60.000 12.10 0.00 0.00 3.33
96 97 4.179579 GGGGCGCGAGAATGTTGC 62.180 66.667 12.10 0.00 0.00 4.17
97 98 3.430862 GGGCGCGAGAATGTTGCA 61.431 61.111 12.10 0.00 34.81 4.08
98 99 2.560861 GGCGCGAGAATGTTGCAA 59.439 55.556 12.10 0.00 34.81 4.08
99 100 1.797537 GGCGCGAGAATGTTGCAAC 60.798 57.895 22.83 22.83 34.81 4.17
100 101 1.797537 GCGCGAGAATGTTGCAACC 60.798 57.895 26.14 11.44 34.81 3.77
101 102 1.573932 CGCGAGAATGTTGCAACCA 59.426 52.632 26.14 14.70 34.81 3.67
102 103 0.725784 CGCGAGAATGTTGCAACCAC 60.726 55.000 26.14 16.47 34.81 4.16
103 104 0.725784 GCGAGAATGTTGCAACCACG 60.726 55.000 26.14 20.14 35.31 4.94
104 105 0.865111 CGAGAATGTTGCAACCACGA 59.135 50.000 26.14 8.49 0.00 4.35
105 106 1.464608 CGAGAATGTTGCAACCACGAT 59.535 47.619 26.14 10.57 0.00 3.73
106 107 2.725759 CGAGAATGTTGCAACCACGATG 60.726 50.000 26.14 9.07 0.00 3.84
107 108 1.068333 AGAATGTTGCAACCACGATGC 60.068 47.619 26.14 11.86 44.08 3.91
108 109 0.961019 AATGTTGCAACCACGATGCT 59.039 45.000 26.14 0.00 44.14 3.79
109 110 0.241749 ATGTTGCAACCACGATGCTG 59.758 50.000 26.14 0.00 44.14 4.41
110 111 0.817229 TGTTGCAACCACGATGCTGA 60.817 50.000 26.14 0.76 44.14 4.26
111 112 0.310543 GTTGCAACCACGATGCTGAA 59.689 50.000 19.15 0.00 44.14 3.02
112 113 1.068333 GTTGCAACCACGATGCTGAAT 60.068 47.619 19.15 0.00 44.14 2.57
113 114 1.246649 TGCAACCACGATGCTGAATT 58.753 45.000 0.00 0.00 44.14 2.17
114 115 1.068402 TGCAACCACGATGCTGAATTG 60.068 47.619 0.00 0.00 44.14 2.32
115 116 1.621107 CAACCACGATGCTGAATTGC 58.379 50.000 0.00 0.00 0.00 3.56
116 117 1.200716 CAACCACGATGCTGAATTGCT 59.799 47.619 0.00 0.00 0.00 3.91
117 118 0.806868 ACCACGATGCTGAATTGCTG 59.193 50.000 0.00 0.00 0.00 4.41
118 119 0.099968 CCACGATGCTGAATTGCTGG 59.900 55.000 0.00 0.00 0.00 4.85
119 120 1.089112 CACGATGCTGAATTGCTGGA 58.911 50.000 0.00 0.00 0.00 3.86
120 121 1.469703 CACGATGCTGAATTGCTGGAA 59.530 47.619 0.00 0.00 0.00 3.53
121 122 1.470098 ACGATGCTGAATTGCTGGAAC 59.530 47.619 0.00 0.00 0.00 3.62
122 123 1.202222 CGATGCTGAATTGCTGGAACC 60.202 52.381 0.00 0.00 0.00 3.62
123 124 0.813184 ATGCTGAATTGCTGGAACCG 59.187 50.000 0.00 0.00 0.00 4.44
124 125 1.243342 TGCTGAATTGCTGGAACCGG 61.243 55.000 0.00 0.00 0.00 5.28
140 141 3.490890 GGCAACGGCAGAAGCTAG 58.509 61.111 0.00 0.00 43.71 3.42
141 142 2.754995 GGCAACGGCAGAAGCTAGC 61.755 63.158 6.62 6.62 43.71 3.42
142 143 2.034879 GCAACGGCAGAAGCTAGCA 61.035 57.895 18.83 0.00 41.70 3.49
143 144 1.577328 GCAACGGCAGAAGCTAGCAA 61.577 55.000 18.83 0.00 41.70 3.91
144 145 0.166814 CAACGGCAGAAGCTAGCAAC 59.833 55.000 18.83 10.23 41.70 4.17
145 146 0.955919 AACGGCAGAAGCTAGCAACC 60.956 55.000 18.83 9.28 41.70 3.77
146 147 2.109126 CGGCAGAAGCTAGCAACCC 61.109 63.158 18.83 8.51 41.70 4.11
147 148 2.109126 GGCAGAAGCTAGCAACCCG 61.109 63.158 18.83 2.07 41.70 5.28
148 149 2.754995 GCAGAAGCTAGCAACCCGC 61.755 63.158 18.83 8.88 38.33 6.13
149 150 1.375908 CAGAAGCTAGCAACCCGCA 60.376 57.895 18.83 0.00 46.13 5.69
150 151 1.078848 AGAAGCTAGCAACCCGCAG 60.079 57.895 18.83 0.00 46.13 5.18
151 152 2.747855 AAGCTAGCAACCCGCAGC 60.748 61.111 18.83 0.00 46.13 5.25
225 226 0.593128 GTTTTGCTGCGATGGTGACT 59.407 50.000 0.00 0.00 0.00 3.41
277 278 4.059459 GTGTGGCAAGCGTCGACG 62.059 66.667 32.57 32.57 43.27 5.12
278 279 4.273257 TGTGGCAAGCGTCGACGA 62.273 61.111 39.74 16.52 43.02 4.20
279 280 3.764049 GTGGCAAGCGTCGACGAC 61.764 66.667 39.74 28.78 43.02 4.34
315 317 2.521224 TGCACCATGCTGCAACCA 60.521 55.556 13.28 0.00 44.28 3.67
319 321 1.753930 CACCATGCTGCAACCATAGA 58.246 50.000 6.36 0.00 0.00 1.98
324 326 0.108186 TGCTGCAACCATAGAGACGG 60.108 55.000 0.00 0.00 0.00 4.79
329 331 0.872021 CAACCATAGAGACGGCGAGC 60.872 60.000 16.62 4.95 0.00 5.03
346 348 3.730761 CTGCAACAGCTGTCGGCC 61.731 66.667 29.62 17.73 43.05 6.13
347 349 4.560743 TGCAACAGCTGTCGGCCA 62.561 61.111 29.62 19.46 43.05 5.36
359 361 2.358247 CGGCCAAGGCTACGTGTT 60.358 61.111 11.40 0.00 41.60 3.32
362 364 0.036671 GGCCAAGGCTACGTGTTAGT 60.037 55.000 11.40 0.00 41.60 2.24
368 370 1.134788 AGGCTACGTGTTAGTGCCATC 60.135 52.381 0.00 0.00 45.42 3.51
384 386 4.329545 TCCACGGCTGGAGTTGCC 62.330 66.667 0.00 0.00 42.15 4.52
449 451 3.900862 TGCTGCAGGGAGGGCAAA 61.901 61.111 17.12 0.00 41.39 3.68
468 470 1.410004 ACGGGCGAAGAAGATGGATA 58.590 50.000 0.00 0.00 0.00 2.59
469 471 1.341531 ACGGGCGAAGAAGATGGATAG 59.658 52.381 0.00 0.00 0.00 2.08
471 473 1.423395 GGCGAAGAAGATGGATAGCG 58.577 55.000 0.00 0.00 0.00 4.26
478 480 2.625790 AGAAGATGGATAGCGAGGTGAC 59.374 50.000 0.00 0.00 0.00 3.67
520 522 2.203126 GATCCTGGAAGCTGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
538 540 2.355193 GGCGCTCTGTCCTCTCCTT 61.355 63.158 7.64 0.00 0.00 3.36
591 594 1.700739 TGAAGTAAGGGGCGAAAGGAA 59.299 47.619 0.00 0.00 0.00 3.36
610 613 4.130118 GGAATAAATCAGACGGTCAGCAT 58.870 43.478 11.27 0.00 0.00 3.79
622 625 2.489329 CGGTCAGCATTTGGTTGATCTT 59.511 45.455 0.00 0.00 39.05 2.40
623 626 3.057315 CGGTCAGCATTTGGTTGATCTTT 60.057 43.478 0.00 0.00 39.05 2.52
624 627 4.240096 GGTCAGCATTTGGTTGATCTTTG 58.760 43.478 0.00 0.00 39.05 2.77
625 628 3.676646 GTCAGCATTTGGTTGATCTTTGC 59.323 43.478 0.00 0.00 39.05 3.68
626 629 3.575256 TCAGCATTTGGTTGATCTTTGCT 59.425 39.130 0.00 0.00 39.38 3.91
627 630 4.766373 TCAGCATTTGGTTGATCTTTGCTA 59.234 37.500 0.00 0.00 36.87 3.49
628 631 5.243507 TCAGCATTTGGTTGATCTTTGCTAA 59.756 36.000 0.00 0.00 36.87 3.09
629 632 5.927689 CAGCATTTGGTTGATCTTTGCTAAA 59.072 36.000 0.00 0.00 36.87 1.85
630 633 6.424509 CAGCATTTGGTTGATCTTTGCTAAAA 59.575 34.615 0.00 0.00 36.87 1.52
631 634 6.991531 AGCATTTGGTTGATCTTTGCTAAAAA 59.008 30.769 0.00 0.00 37.21 1.94
652 655 4.574599 AAAAGCAGTTGGTTGATCTGAC 57.425 40.909 0.00 0.00 35.72 3.51
653 656 1.800805 AGCAGTTGGTTGATCTGACG 58.199 50.000 0.00 0.00 0.00 4.35
654 657 0.798776 GCAGTTGGTTGATCTGACGG 59.201 55.000 0.00 0.00 0.00 4.79
655 658 1.608025 GCAGTTGGTTGATCTGACGGA 60.608 52.381 0.00 0.00 0.00 4.69
656 659 2.936993 GCAGTTGGTTGATCTGACGGAT 60.937 50.000 0.00 0.00 37.37 4.18
684 687 0.818040 ACCGGCCTGAAATATTCGGC 60.818 55.000 0.00 11.37 43.64 5.54
690 693 0.817634 CTGAAATATTCGGCCGGCCA 60.818 55.000 42.78 27.27 35.37 5.36
715 718 4.162690 CCTAGCGCGGGCCTTCTT 62.163 66.667 22.01 4.45 41.24 2.52
716 719 2.586357 CTAGCGCGGGCCTTCTTC 60.586 66.667 22.01 0.00 41.24 2.87
718 1163 2.650813 CTAGCGCGGGCCTTCTTCAT 62.651 60.000 22.01 2.02 41.24 2.57
721 1166 2.247437 CGCGGGCCTTCTTCATAGC 61.247 63.158 0.84 0.00 0.00 2.97
722 1167 1.153168 GCGGGCCTTCTTCATAGCA 60.153 57.895 0.84 0.00 0.00 3.49
726 1171 2.159379 CGGGCCTTCTTCATAGCAAAAC 60.159 50.000 0.84 0.00 0.00 2.43
727 1172 2.825532 GGGCCTTCTTCATAGCAAAACA 59.174 45.455 0.84 0.00 0.00 2.83
898 1345 4.394712 CACACCTCTCCCCACCGC 62.395 72.222 0.00 0.00 0.00 5.68
998 1445 2.587889 CCATCCGTTTACCCCGCT 59.412 61.111 0.00 0.00 0.00 5.52
1104 1558 0.100682 CGTCCGATCCTACTGTGGTG 59.899 60.000 0.00 0.00 0.00 4.17
1105 1559 0.460311 GTCCGATCCTACTGTGGTGG 59.540 60.000 0.00 0.00 0.00 4.61
1107 1561 1.226974 CGATCCTACTGTGGTGGCG 60.227 63.158 0.00 0.00 0.00 5.69
1162 1624 0.747283 CTCTGGCCGGAGTACTACGT 60.747 60.000 30.58 0.00 34.48 3.57
1163 1625 1.028330 TCTGGCCGGAGTACTACGTG 61.028 60.000 25.33 17.37 34.48 4.49
1286 1748 4.078516 CCGGTGGACGTTCCTCCC 62.079 72.222 15.15 9.73 45.12 4.30
1287 1749 3.307906 CGGTGGACGTTCCTCCCA 61.308 66.667 15.15 4.56 45.12 4.37
1288 1750 2.346365 GGTGGACGTTCCTCCCAC 59.654 66.667 13.52 13.52 42.82 4.61
1289 1751 3.468063 GTGGACGTTCCTCCCACT 58.532 61.111 14.38 0.00 45.08 4.00
1331 1793 2.098831 GCTACGGTGGAAAGACGGC 61.099 63.158 0.00 0.00 0.00 5.68
1339 1801 0.389817 TGGAAAGACGGCACTGATCG 60.390 55.000 0.00 0.00 0.00 3.69
1553 2018 3.243177 GCTTTATCGAAGGATGACACGTC 59.757 47.826 0.00 0.00 35.82 4.34
1557 2033 2.651455 TCGAAGGATGACACGTCCTAT 58.349 47.619 12.11 4.33 45.23 2.57
1560 2036 3.428999 CGAAGGATGACACGTCCTATGTT 60.429 47.826 12.11 0.00 45.23 2.71
1561 2037 4.504858 GAAGGATGACACGTCCTATGTTT 58.495 43.478 12.11 0.00 45.23 2.83
1562 2038 3.861840 AGGATGACACGTCCTATGTTTG 58.138 45.455 10.34 0.00 44.17 2.93
1563 2039 2.936498 GGATGACACGTCCTATGTTTGG 59.064 50.000 0.00 0.00 32.85 3.28
1564 2040 2.465860 TGACACGTCCTATGTTTGGG 57.534 50.000 0.00 0.00 0.00 4.12
1565 2041 1.002659 TGACACGTCCTATGTTTGGGG 59.997 52.381 0.00 0.00 0.00 4.96
1566 2042 0.322187 ACACGTCCTATGTTTGGGGC 60.322 55.000 0.00 0.00 0.00 5.80
1568 2044 1.208535 CACGTCCTATGTTTGGGGCTA 59.791 52.381 0.00 0.00 0.00 3.93
1569 2045 1.208776 ACGTCCTATGTTTGGGGCTAC 59.791 52.381 0.00 0.00 0.00 3.58
1570 2046 1.474498 CGTCCTATGTTTGGGGCTACC 60.474 57.143 0.00 0.00 40.81 3.18
1580 2056 2.990740 TGGGGCTACCACTTCAATTT 57.009 45.000 0.00 0.00 46.80 1.82
1581 2057 2.524306 TGGGGCTACCACTTCAATTTG 58.476 47.619 0.00 0.00 46.80 2.32
1582 2058 2.158385 TGGGGCTACCACTTCAATTTGT 60.158 45.455 0.00 0.00 46.80 2.83
1583 2059 3.074687 TGGGGCTACCACTTCAATTTGTA 59.925 43.478 0.00 0.00 46.80 2.41
1584 2060 3.694566 GGGGCTACCACTTCAATTTGTAG 59.305 47.826 1.87 1.87 39.85 2.74
1585 2061 4.566907 GGGGCTACCACTTCAATTTGTAGA 60.567 45.833 9.68 0.00 39.85 2.59
1586 2062 5.193679 GGGCTACCACTTCAATTTGTAGAT 58.806 41.667 9.68 0.00 36.50 1.98
1587 2063 5.297029 GGGCTACCACTTCAATTTGTAGATC 59.703 44.000 9.68 0.00 36.50 2.75
1588 2064 5.880332 GGCTACCACTTCAATTTGTAGATCA 59.120 40.000 9.68 0.00 32.54 2.92
1589 2065 6.037610 GGCTACCACTTCAATTTGTAGATCAG 59.962 42.308 9.68 3.37 32.54 2.90
1590 2066 6.818644 GCTACCACTTCAATTTGTAGATCAGA 59.181 38.462 9.68 0.00 32.54 3.27
1591 2067 7.334421 GCTACCACTTCAATTTGTAGATCAGAA 59.666 37.037 9.68 0.00 32.54 3.02
1592 2068 9.219603 CTACCACTTCAATTTGTAGATCAGAAA 57.780 33.333 9.68 0.00 32.54 2.52
1593 2069 8.641498 ACCACTTCAATTTGTAGATCAGAAAT 57.359 30.769 9.68 0.00 31.71 2.17
1594 2070 8.517878 ACCACTTCAATTTGTAGATCAGAAATG 58.482 33.333 9.68 0.00 30.90 2.32
1595 2071 7.972277 CCACTTCAATTTGTAGATCAGAAATGG 59.028 37.037 9.68 0.00 30.90 3.16
1596 2072 8.517878 CACTTCAATTTGTAGATCAGAAATGGT 58.482 33.333 9.68 0.00 30.90 3.55
1597 2073 8.734386 ACTTCAATTTGTAGATCAGAAATGGTC 58.266 33.333 9.68 0.00 30.90 4.02
1598 2074 8.634335 TTCAATTTGTAGATCAGAAATGGTCA 57.366 30.769 0.00 0.00 30.90 4.02
1599 2075 8.634335 TCAATTTGTAGATCAGAAATGGTCAA 57.366 30.769 0.00 0.00 30.90 3.18
1600 2076 9.076781 TCAATTTGTAGATCAGAAATGGTCAAA 57.923 29.630 0.00 0.00 30.90 2.69
1601 2077 9.865321 CAATTTGTAGATCAGAAATGGTCAAAT 57.135 29.630 0.00 0.00 35.47 2.32
1602 2078 9.865321 AATTTGTAGATCAGAAATGGTCAAATG 57.135 29.630 0.00 0.00 34.64 2.32
1603 2079 7.395190 TTGTAGATCAGAAATGGTCAAATGG 57.605 36.000 0.00 0.00 0.00 3.16
1604 2080 6.720309 TGTAGATCAGAAATGGTCAAATGGA 58.280 36.000 0.00 0.00 0.00 3.41
1605 2081 7.348815 TGTAGATCAGAAATGGTCAAATGGAT 58.651 34.615 0.00 0.00 0.00 3.41
1606 2082 7.835682 TGTAGATCAGAAATGGTCAAATGGATT 59.164 33.333 0.00 0.00 0.00 3.01
1607 2083 7.729124 AGATCAGAAATGGTCAAATGGATTT 57.271 32.000 0.00 0.00 0.00 2.17
1608 2084 7.553334 AGATCAGAAATGGTCAAATGGATTTG 58.447 34.615 5.85 5.85 46.39 2.32
1619 2095 2.879103 ATGGATTTGAACCGGTCTGT 57.121 45.000 8.04 0.00 0.00 3.41
1620 2096 3.992943 ATGGATTTGAACCGGTCTGTA 57.007 42.857 8.04 0.00 0.00 2.74
1621 2097 3.048337 TGGATTTGAACCGGTCTGTAC 57.952 47.619 8.04 0.00 0.00 2.90
1622 2098 1.997606 GGATTTGAACCGGTCTGTACG 59.002 52.381 8.04 0.00 0.00 3.67
1623 2099 2.611224 GGATTTGAACCGGTCTGTACGT 60.611 50.000 8.04 0.00 0.00 3.57
1624 2100 1.855513 TTTGAACCGGTCTGTACGTG 58.144 50.000 8.04 0.00 0.00 4.49
1625 2101 0.032403 TTGAACCGGTCTGTACGTGG 59.968 55.000 8.04 0.00 0.00 4.94
1626 2102 1.735559 GAACCGGTCTGTACGTGGC 60.736 63.158 8.04 0.00 0.00 5.01
1627 2103 2.424705 GAACCGGTCTGTACGTGGCA 62.425 60.000 8.04 0.00 0.00 4.92
1628 2104 1.823169 AACCGGTCTGTACGTGGCAT 61.823 55.000 8.04 0.00 0.00 4.40
1629 2105 1.518572 CCGGTCTGTACGTGGCATC 60.519 63.158 0.00 0.00 0.00 3.91
1630 2106 1.214325 CGGTCTGTACGTGGCATCA 59.786 57.895 0.00 0.00 0.00 3.07
1631 2107 0.389296 CGGTCTGTACGTGGCATCAA 60.389 55.000 0.00 0.00 0.00 2.57
1632 2108 1.739035 CGGTCTGTACGTGGCATCAAT 60.739 52.381 0.00 0.00 0.00 2.57
1633 2109 1.933853 GGTCTGTACGTGGCATCAATC 59.066 52.381 0.00 0.00 0.00 2.67
1634 2110 2.418746 GGTCTGTACGTGGCATCAATCT 60.419 50.000 0.00 0.00 0.00 2.40
1635 2111 3.181479 GGTCTGTACGTGGCATCAATCTA 60.181 47.826 0.00 0.00 0.00 1.98
1636 2112 4.045104 GTCTGTACGTGGCATCAATCTAG 58.955 47.826 0.00 0.00 0.00 2.43
1637 2113 3.699538 TCTGTACGTGGCATCAATCTAGT 59.300 43.478 0.00 0.00 0.00 2.57
1638 2114 4.041740 TGTACGTGGCATCAATCTAGTC 57.958 45.455 0.00 0.00 0.00 2.59
1639 2115 3.699538 TGTACGTGGCATCAATCTAGTCT 59.300 43.478 0.00 0.00 0.00 3.24
1640 2116 4.885325 TGTACGTGGCATCAATCTAGTCTA 59.115 41.667 0.00 0.00 0.00 2.59
1641 2117 5.535030 TGTACGTGGCATCAATCTAGTCTAT 59.465 40.000 0.00 0.00 0.00 1.98
1642 2118 5.127693 ACGTGGCATCAATCTAGTCTATC 57.872 43.478 0.00 0.00 0.00 2.08
1643 2119 4.830046 ACGTGGCATCAATCTAGTCTATCT 59.170 41.667 0.00 0.00 0.00 1.98
1644 2120 6.004574 ACGTGGCATCAATCTAGTCTATCTA 58.995 40.000 0.00 0.00 0.00 1.98
1645 2121 6.661377 ACGTGGCATCAATCTAGTCTATCTAT 59.339 38.462 0.00 0.00 0.00 1.98
1646 2122 7.148154 ACGTGGCATCAATCTAGTCTATCTATC 60.148 40.741 0.00 0.00 0.00 2.08
1647 2123 7.066887 CGTGGCATCAATCTAGTCTATCTATCT 59.933 40.741 0.00 0.00 0.00 1.98
1648 2124 9.402320 GTGGCATCAATCTAGTCTATCTATCTA 57.598 37.037 0.00 0.00 0.00 1.98
1649 2125 9.625747 TGGCATCAATCTAGTCTATCTATCTAG 57.374 37.037 0.00 0.00 34.32 2.43
1650 2126 9.627123 GGCATCAATCTAGTCTATCTATCTAGT 57.373 37.037 0.00 0.00 34.55 2.57
1686 2162 1.665679 AGCACGTGCATAAATTCCTCG 59.334 47.619 39.21 0.00 45.16 4.63
1690 2166 4.717991 CACGTGCATAAATTCCTCGAAAA 58.282 39.130 0.82 0.00 0.00 2.29
1694 2170 7.643764 CACGTGCATAAATTCCTCGAAAATAAT 59.356 33.333 0.82 0.00 0.00 1.28
1695 2171 7.855904 ACGTGCATAAATTCCTCGAAAATAATC 59.144 33.333 0.00 0.00 0.00 1.75
1707 2183 4.269123 TCGAAAATAATCTTATGCGTGCGT 59.731 37.500 0.00 0.00 0.00 5.24
1712 2188 5.673337 ATAATCTTATGCGTGCGTTCAAT 57.327 34.783 0.00 0.00 0.00 2.57
1717 2193 4.568760 TCTTATGCGTGCGTTCAATGAATA 59.431 37.500 0.00 0.00 0.00 1.75
1718 2194 3.969117 ATGCGTGCGTTCAATGAATAT 57.031 38.095 0.00 0.00 0.00 1.28
1724 2200 5.113975 GCGTGCGTTCAATGAATATGTTATG 59.886 40.000 0.00 0.00 0.00 1.90
1726 2202 6.904543 CGTGCGTTCAATGAATATGTTATGAA 59.095 34.615 0.00 0.00 0.00 2.57
1732 2208 9.571810 GTTCAATGAATATGTTATGAAAGTGCA 57.428 29.630 0.00 0.00 0.00 4.57
1768 2277 4.526970 ACTTGTTGCTATCGATGGGATTT 58.473 39.130 8.54 0.00 36.55 2.17
1779 2288 2.415893 CGATGGGATTTGCACCAAGTTC 60.416 50.000 0.00 0.00 40.73 3.01
1785 2294 0.741915 TTTGCACCAAGTTCCGAACC 59.258 50.000 7.68 0.00 0.00 3.62
1786 2295 0.394488 TTGCACCAAGTTCCGAACCA 60.394 50.000 7.68 0.00 0.00 3.67
1787 2296 0.394488 TGCACCAAGTTCCGAACCAA 60.394 50.000 7.68 0.00 0.00 3.67
1788 2297 0.310854 GCACCAAGTTCCGAACCAAG 59.689 55.000 7.68 0.00 0.00 3.61
1789 2298 0.951558 CACCAAGTTCCGAACCAAGG 59.048 55.000 7.68 9.60 0.00 3.61
1790 2299 0.549469 ACCAAGTTCCGAACCAAGGT 59.451 50.000 7.68 10.19 0.00 3.50
1791 2300 1.770061 ACCAAGTTCCGAACCAAGGTA 59.230 47.619 14.78 0.00 31.27 3.08
1792 2301 2.374170 ACCAAGTTCCGAACCAAGGTAT 59.626 45.455 14.78 0.00 31.27 2.73
1793 2302 3.583966 ACCAAGTTCCGAACCAAGGTATA 59.416 43.478 14.78 0.00 31.27 1.47
1800 2309 6.891908 AGTTCCGAACCAAGGTATACTACTTA 59.108 38.462 7.68 0.00 0.00 2.24
1814 2323 4.111375 ACTACTTATCTTGCCGTGTGAG 57.889 45.455 0.00 0.00 0.00 3.51
1820 2329 2.839486 TCTTGCCGTGTGAGAATTCT 57.161 45.000 7.95 7.95 0.00 2.40
1825 2334 2.143122 GCCGTGTGAGAATTCTGTCAA 58.857 47.619 14.00 0.00 0.00 3.18
1826 2335 2.548057 GCCGTGTGAGAATTCTGTCAAA 59.452 45.455 14.00 0.00 0.00 2.69
1827 2336 3.189287 GCCGTGTGAGAATTCTGTCAAAT 59.811 43.478 14.00 0.00 0.00 2.32
1828 2337 4.391830 GCCGTGTGAGAATTCTGTCAAATA 59.608 41.667 14.00 0.00 0.00 1.40
1829 2338 5.065218 GCCGTGTGAGAATTCTGTCAAATAT 59.935 40.000 14.00 0.00 0.00 1.28
1830 2339 6.403636 GCCGTGTGAGAATTCTGTCAAATATT 60.404 38.462 14.00 0.00 0.00 1.28
1853 2362 4.201871 TGGTCAAACGAAGCAAGTTTACAG 60.202 41.667 0.00 0.00 39.50 2.74
1854 2363 4.034742 GGTCAAACGAAGCAAGTTTACAGA 59.965 41.667 0.00 0.00 39.50 3.41
1861 2370 4.321304 CGAAGCAAGTTTACAGAGGAGAGA 60.321 45.833 0.00 0.00 0.00 3.10
1862 2371 5.542779 GAAGCAAGTTTACAGAGGAGAGAA 58.457 41.667 0.00 0.00 0.00 2.87
1863 2372 5.753721 AGCAAGTTTACAGAGGAGAGAAT 57.246 39.130 0.00 0.00 0.00 2.40
1864 2373 6.120507 AGCAAGTTTACAGAGGAGAGAATT 57.879 37.500 0.00 0.00 0.00 2.17
1865 2374 6.169800 AGCAAGTTTACAGAGGAGAGAATTC 58.830 40.000 0.00 0.00 0.00 2.17
1867 2376 5.331876 AGTTTACAGAGGAGAGAATTCCG 57.668 43.478 0.65 0.00 42.29 4.30
1868 2377 4.773149 AGTTTACAGAGGAGAGAATTCCGT 59.227 41.667 0.65 0.00 42.29 4.69
1869 2378 4.985538 TTACAGAGGAGAGAATTCCGTC 57.014 45.455 0.65 0.00 42.29 4.79
1871 2380 3.370104 ACAGAGGAGAGAATTCCGTCAT 58.630 45.455 0.65 0.00 42.29 3.06
1872 2381 3.772025 ACAGAGGAGAGAATTCCGTCATT 59.228 43.478 0.65 0.00 42.29 2.57
1874 2383 3.133721 AGAGGAGAGAATTCCGTCATTGG 59.866 47.826 0.65 0.00 42.29 3.16
1879 2430 3.261897 AGAGAATTCCGTCATTGGTCAGT 59.738 43.478 0.65 0.00 0.00 3.41
1881 2432 4.759782 AGAATTCCGTCATTGGTCAGTAG 58.240 43.478 0.65 0.00 0.00 2.57
1882 2433 3.543680 ATTCCGTCATTGGTCAGTAGG 57.456 47.619 0.00 0.00 0.00 3.18
1894 2445 2.182825 GTCAGTAGGACAATACGCGTG 58.817 52.381 24.59 8.01 46.19 5.34
1896 2447 0.528924 AGTAGGACAATACGCGTGCA 59.471 50.000 24.59 2.06 0.00 4.57
1904 2455 2.922387 ACAATACGCGTGCAAATACGTA 59.078 40.909 24.59 12.28 45.36 3.57
1925 2478 1.460743 CACGTACACGACTTACTCCGA 59.539 52.381 9.04 0.00 43.02 4.55
1948 2501 2.520741 GGAGGGCTAGAGCGAGCT 60.521 66.667 0.00 0.00 42.43 4.09
2010 2592 1.523758 CAACTCAACCCCTTCCTTCG 58.476 55.000 0.00 0.00 0.00 3.79
2046 2634 3.746492 AGCTAGCAAAGTTTGTCCTAACG 59.254 43.478 18.83 2.40 33.26 3.18
2126 2714 2.355193 ACGCCAGCTTCTCCCTCTC 61.355 63.158 0.00 0.00 0.00 3.20
2127 2715 2.907236 GCCAGCTTCTCCCTCTCC 59.093 66.667 0.00 0.00 0.00 3.71
2128 2716 1.688884 GCCAGCTTCTCCCTCTCCT 60.689 63.158 0.00 0.00 0.00 3.69
2129 2717 1.271127 GCCAGCTTCTCCCTCTCCTT 61.271 60.000 0.00 0.00 0.00 3.36
2130 2718 0.829990 CCAGCTTCTCCCTCTCCTTC 59.170 60.000 0.00 0.00 0.00 3.46
2131 2719 0.829990 CAGCTTCTCCCTCTCCTTCC 59.170 60.000 0.00 0.00 0.00 3.46
2132 2720 0.326143 AGCTTCTCCCTCTCCTTCCC 60.326 60.000 0.00 0.00 0.00 3.97
2133 2721 1.341913 GCTTCTCCCTCTCCTTCCCC 61.342 65.000 0.00 0.00 0.00 4.81
2134 2722 0.341609 CTTCTCCCTCTCCTTCCCCT 59.658 60.000 0.00 0.00 0.00 4.79
2327 2927 1.507630 CAACGTCGACGGGGACATA 59.492 57.895 37.89 0.00 44.95 2.29
2328 2928 0.109179 CAACGTCGACGGGGACATAA 60.109 55.000 37.89 0.00 44.95 1.90
2616 3216 0.900647 CAGGAACCTCGTCCTCAGGT 60.901 60.000 0.00 0.00 45.40 4.00
2650 3250 8.350722 ATTCATCGAGAAATGAAATGGATTCAG 58.649 33.333 3.47 0.00 45.91 3.02
2665 3266 2.746412 TTCAGCACCGTGGATGTGGG 62.746 60.000 0.00 0.00 34.27 4.61
2675 3276 2.807967 CGTGGATGTGGGTATATTGCTG 59.192 50.000 0.00 0.00 0.00 4.41
2690 3291 1.444895 GCTGCATTGCTTGGGAACG 60.445 57.895 10.49 0.00 0.00 3.95
2691 3292 1.959085 CTGCATTGCTTGGGAACGT 59.041 52.632 10.49 0.00 0.00 3.99
2692 3293 0.109597 CTGCATTGCTTGGGAACGTC 60.110 55.000 10.49 0.00 0.00 4.34
2693 3294 1.212751 GCATTGCTTGGGAACGTCC 59.787 57.895 0.16 0.00 35.23 4.79
2694 3295 1.523154 GCATTGCTTGGGAACGTCCA 61.523 55.000 0.16 0.00 38.64 4.02
2695 3296 1.176527 CATTGCTTGGGAACGTCCAT 58.823 50.000 0.00 0.00 38.64 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.081972 TCAGATCACTAGTTGCAACTCCTC 60.082 45.833 34.29 22.11 40.37 3.71
1 2 3.834813 TCAGATCACTAGTTGCAACTCCT 59.165 43.478 34.29 18.11 40.37 3.69
2 3 4.193826 TCAGATCACTAGTTGCAACTCC 57.806 45.455 34.29 16.95 40.37 3.85
3 4 6.541086 CAAATCAGATCACTAGTTGCAACTC 58.459 40.000 34.29 19.29 40.37 3.01
4 5 5.106396 GCAAATCAGATCACTAGTTGCAACT 60.106 40.000 32.97 32.97 42.91 3.16
5 6 5.091431 GCAAATCAGATCACTAGTTGCAAC 58.909 41.667 22.17 22.17 36.85 4.17
6 7 5.005740 AGCAAATCAGATCACTAGTTGCAA 58.994 37.500 21.16 0.00 38.07 4.08
7 8 4.582869 AGCAAATCAGATCACTAGTTGCA 58.417 39.130 21.16 0.00 38.07 4.08
8 9 6.045318 TCTAGCAAATCAGATCACTAGTTGC 58.955 40.000 15.11 15.11 36.98 4.17
9 10 7.010923 GGTTCTAGCAAATCAGATCACTAGTTG 59.989 40.741 0.00 0.00 0.00 3.16
10 11 7.044798 GGTTCTAGCAAATCAGATCACTAGTT 58.955 38.462 0.00 0.00 0.00 2.24
11 12 6.578023 GGTTCTAGCAAATCAGATCACTAGT 58.422 40.000 11.40 0.00 0.00 2.57
12 13 5.689514 CGGTTCTAGCAAATCAGATCACTAG 59.310 44.000 0.00 7.54 0.00 2.57
13 14 5.451937 CCGGTTCTAGCAAATCAGATCACTA 60.452 44.000 0.00 0.00 0.00 2.74
14 15 4.437239 CGGTTCTAGCAAATCAGATCACT 58.563 43.478 0.00 0.00 0.00 3.41
15 16 3.557595 CCGGTTCTAGCAAATCAGATCAC 59.442 47.826 0.00 0.00 0.00 3.06
16 17 3.797039 CCGGTTCTAGCAAATCAGATCA 58.203 45.455 0.00 0.00 0.00 2.92
17 18 2.545946 GCCGGTTCTAGCAAATCAGATC 59.454 50.000 1.90 0.00 0.00 2.75
18 19 2.092968 TGCCGGTTCTAGCAAATCAGAT 60.093 45.455 1.90 0.00 35.69 2.90
19 20 1.277842 TGCCGGTTCTAGCAAATCAGA 59.722 47.619 1.90 0.00 35.69 3.27
20 21 1.737838 TGCCGGTTCTAGCAAATCAG 58.262 50.000 1.90 0.00 35.69 2.90
21 22 2.192664 TTGCCGGTTCTAGCAAATCA 57.807 45.000 1.90 0.00 45.51 2.57
25 26 2.240230 CGTTTGCCGGTTCTAGCAA 58.760 52.632 1.90 0.00 46.74 3.91
26 27 3.960237 CGTTTGCCGGTTCTAGCA 58.040 55.556 1.90 0.00 37.18 3.49
38 39 4.809426 CCCTAGTTCTAGCAATACCGTTTG 59.191 45.833 1.68 0.00 0.00 2.93
39 40 4.713321 TCCCTAGTTCTAGCAATACCGTTT 59.287 41.667 1.68 0.00 0.00 3.60
40 41 4.284178 TCCCTAGTTCTAGCAATACCGTT 58.716 43.478 1.68 0.00 0.00 4.44
41 42 3.890147 CTCCCTAGTTCTAGCAATACCGT 59.110 47.826 1.68 0.00 0.00 4.83
42 43 3.890147 ACTCCCTAGTTCTAGCAATACCG 59.110 47.826 1.68 0.00 29.00 4.02
43 44 4.894114 TCACTCCCTAGTTCTAGCAATACC 59.106 45.833 1.68 0.00 31.97 2.73
44 45 5.508320 GCTCACTCCCTAGTTCTAGCAATAC 60.508 48.000 1.68 0.00 35.18 1.89
45 46 4.585162 GCTCACTCCCTAGTTCTAGCAATA 59.415 45.833 1.68 0.00 35.18 1.90
46 47 3.386402 GCTCACTCCCTAGTTCTAGCAAT 59.614 47.826 1.68 0.00 35.18 3.56
47 48 2.761208 GCTCACTCCCTAGTTCTAGCAA 59.239 50.000 1.68 0.00 35.18 3.91
48 49 2.379972 GCTCACTCCCTAGTTCTAGCA 58.620 52.381 1.68 0.00 35.18 3.49
49 50 1.684450 GGCTCACTCCCTAGTTCTAGC 59.316 57.143 1.68 0.00 34.70 3.42
50 51 3.019799 TGGCTCACTCCCTAGTTCTAG 57.980 52.381 0.31 0.31 31.97 2.43
51 52 3.468071 TTGGCTCACTCCCTAGTTCTA 57.532 47.619 0.00 0.00 31.97 2.10
52 53 2.327325 TTGGCTCACTCCCTAGTTCT 57.673 50.000 0.00 0.00 31.97 3.01
53 54 2.501723 TCATTGGCTCACTCCCTAGTTC 59.498 50.000 0.00 0.00 31.97 3.01
54 55 2.551270 TCATTGGCTCACTCCCTAGTT 58.449 47.619 0.00 0.00 31.97 2.24
55 56 2.254152 TCATTGGCTCACTCCCTAGT 57.746 50.000 0.00 0.00 35.91 2.57
56 57 2.702478 TCATCATTGGCTCACTCCCTAG 59.298 50.000 0.00 0.00 0.00 3.02
57 58 2.763039 TCATCATTGGCTCACTCCCTA 58.237 47.619 0.00 0.00 0.00 3.53
58 59 1.588239 TCATCATTGGCTCACTCCCT 58.412 50.000 0.00 0.00 0.00 4.20
59 60 2.228059 CATCATCATTGGCTCACTCCC 58.772 52.381 0.00 0.00 0.00 4.30
60 61 2.228059 CCATCATCATTGGCTCACTCC 58.772 52.381 0.00 0.00 0.00 3.85
61 62 2.228059 CCCATCATCATTGGCTCACTC 58.772 52.381 0.00 0.00 32.60 3.51
62 63 1.133575 CCCCATCATCATTGGCTCACT 60.134 52.381 0.00 0.00 32.60 3.41
63 64 1.325355 CCCCATCATCATTGGCTCAC 58.675 55.000 0.00 0.00 32.60 3.51
64 65 0.468585 GCCCCATCATCATTGGCTCA 60.469 55.000 0.00 0.00 39.05 4.26
65 66 1.521450 CGCCCCATCATCATTGGCTC 61.521 60.000 0.00 0.00 39.97 4.70
66 67 1.529948 CGCCCCATCATCATTGGCT 60.530 57.895 0.00 0.00 39.97 4.75
67 68 3.045142 CGCCCCATCATCATTGGC 58.955 61.111 0.00 0.00 38.74 4.52
68 69 2.911484 CGCGCCCCATCATCATTGG 61.911 63.158 0.00 0.00 0.00 3.16
69 70 1.848932 CTCGCGCCCCATCATCATTG 61.849 60.000 0.00 0.00 0.00 2.82
70 71 1.598962 CTCGCGCCCCATCATCATT 60.599 57.895 0.00 0.00 0.00 2.57
71 72 2.031616 CTCGCGCCCCATCATCAT 59.968 61.111 0.00 0.00 0.00 2.45
72 73 2.043604 ATTCTCGCGCCCCATCATCA 62.044 55.000 0.00 0.00 0.00 3.07
73 74 1.302033 ATTCTCGCGCCCCATCATC 60.302 57.895 0.00 0.00 0.00 2.92
74 75 1.598962 CATTCTCGCGCCCCATCAT 60.599 57.895 0.00 0.00 0.00 2.45
75 76 2.203056 CATTCTCGCGCCCCATCA 60.203 61.111 0.00 0.00 0.00 3.07
76 77 1.819632 AACATTCTCGCGCCCCATC 60.820 57.895 0.00 0.00 0.00 3.51
77 78 2.114670 CAACATTCTCGCGCCCCAT 61.115 57.895 0.00 0.00 0.00 4.00
78 79 2.745884 CAACATTCTCGCGCCCCA 60.746 61.111 0.00 0.00 0.00 4.96
79 80 4.179579 GCAACATTCTCGCGCCCC 62.180 66.667 0.00 0.00 0.00 5.80
80 81 2.976840 TTGCAACATTCTCGCGCCC 61.977 57.895 0.00 0.00 0.00 6.13
81 82 1.797537 GTTGCAACATTCTCGCGCC 60.798 57.895 24.52 0.00 0.00 6.53
82 83 1.797537 GGTTGCAACATTCTCGCGC 60.798 57.895 29.55 6.43 0.00 6.86
83 84 0.725784 GTGGTTGCAACATTCTCGCG 60.726 55.000 29.55 0.00 0.00 5.87
84 85 0.725784 CGTGGTTGCAACATTCTCGC 60.726 55.000 29.55 17.10 0.00 5.03
85 86 0.865111 TCGTGGTTGCAACATTCTCG 59.135 50.000 29.55 22.41 0.00 4.04
86 87 2.855180 CATCGTGGTTGCAACATTCTC 58.145 47.619 29.55 13.25 0.00 2.87
87 88 1.068333 GCATCGTGGTTGCAACATTCT 60.068 47.619 29.55 8.33 39.90 2.40
88 89 1.068333 AGCATCGTGGTTGCAACATTC 60.068 47.619 29.55 17.39 42.62 2.67
89 90 0.961019 AGCATCGTGGTTGCAACATT 59.039 45.000 29.55 7.44 42.62 2.71
90 91 0.241749 CAGCATCGTGGTTGCAACAT 59.758 50.000 29.55 12.72 42.62 2.71
91 92 0.817229 TCAGCATCGTGGTTGCAACA 60.817 50.000 29.55 13.95 42.62 3.33
92 93 0.310543 TTCAGCATCGTGGTTGCAAC 59.689 50.000 21.59 21.59 42.62 4.17
93 94 1.246649 ATTCAGCATCGTGGTTGCAA 58.753 45.000 0.00 0.00 42.62 4.08
94 95 1.068402 CAATTCAGCATCGTGGTTGCA 60.068 47.619 0.00 0.00 42.62 4.08
95 96 1.621107 CAATTCAGCATCGTGGTTGC 58.379 50.000 0.00 0.00 40.45 4.17
96 97 1.200716 AGCAATTCAGCATCGTGGTTG 59.799 47.619 0.00 0.00 36.85 3.77
97 98 1.200716 CAGCAATTCAGCATCGTGGTT 59.799 47.619 0.00 0.00 36.85 3.67
98 99 0.806868 CAGCAATTCAGCATCGTGGT 59.193 50.000 0.00 0.00 36.85 4.16
99 100 0.099968 CCAGCAATTCAGCATCGTGG 59.900 55.000 0.00 0.00 36.85 4.94
100 101 1.089112 TCCAGCAATTCAGCATCGTG 58.911 50.000 0.00 0.00 36.85 4.35
101 102 1.470098 GTTCCAGCAATTCAGCATCGT 59.530 47.619 0.00 0.00 36.85 3.73
102 103 1.202222 GGTTCCAGCAATTCAGCATCG 60.202 52.381 0.00 0.00 36.85 3.84
103 104 1.202222 CGGTTCCAGCAATTCAGCATC 60.202 52.381 0.00 0.00 36.85 3.91
104 105 0.813184 CGGTTCCAGCAATTCAGCAT 59.187 50.000 0.00 0.00 36.85 3.79
105 106 1.243342 CCGGTTCCAGCAATTCAGCA 61.243 55.000 0.00 0.00 36.85 4.41
106 107 1.508088 CCGGTTCCAGCAATTCAGC 59.492 57.895 0.00 0.00 0.00 4.26
107 108 1.243342 TGCCGGTTCCAGCAATTCAG 61.243 55.000 1.90 0.00 35.69 3.02
108 109 0.825425 TTGCCGGTTCCAGCAATTCA 60.825 50.000 1.90 0.00 43.74 2.57
109 110 1.963679 TTGCCGGTTCCAGCAATTC 59.036 52.632 1.90 0.00 43.74 2.17
110 111 4.189539 TTGCCGGTTCCAGCAATT 57.810 50.000 1.90 0.00 43.74 2.32
112 113 3.283684 CGTTGCCGGTTCCAGCAA 61.284 61.111 1.90 8.21 46.26 3.91
122 123 2.434185 TAGCTTCTGCCGTTGCCG 60.434 61.111 0.00 0.00 40.80 5.69
123 124 2.754995 GCTAGCTTCTGCCGTTGCC 61.755 63.158 7.70 0.00 40.80 4.52
124 125 1.577328 TTGCTAGCTTCTGCCGTTGC 61.577 55.000 17.23 0.00 40.80 4.17
125 126 0.166814 GTTGCTAGCTTCTGCCGTTG 59.833 55.000 17.23 0.00 40.80 4.10
126 127 0.955919 GGTTGCTAGCTTCTGCCGTT 60.956 55.000 17.23 0.00 40.80 4.44
127 128 1.376037 GGTTGCTAGCTTCTGCCGT 60.376 57.895 17.23 0.00 40.80 5.68
128 129 2.109126 GGGTTGCTAGCTTCTGCCG 61.109 63.158 17.23 0.00 40.80 5.69
129 130 2.109126 CGGGTTGCTAGCTTCTGCC 61.109 63.158 17.23 10.17 40.80 4.85
130 131 2.754995 GCGGGTTGCTAGCTTCTGC 61.755 63.158 17.23 16.62 41.73 4.26
131 132 1.364626 CTGCGGGTTGCTAGCTTCTG 61.365 60.000 17.23 11.04 46.63 3.02
132 133 1.078848 CTGCGGGTTGCTAGCTTCT 60.079 57.895 17.23 0.00 46.63 2.85
133 134 2.754995 GCTGCGGGTTGCTAGCTTC 61.755 63.158 17.23 8.63 46.63 3.86
134 135 2.747855 GCTGCGGGTTGCTAGCTT 60.748 61.111 17.23 0.00 46.63 3.74
172 173 1.408969 ACCATTTCAGTTTGCCGGTT 58.591 45.000 1.90 0.00 0.00 4.44
183 184 4.280436 ACTCATCGGTTGTACCATTTCA 57.720 40.909 0.00 0.00 38.47 2.69
204 205 1.028130 TCACCATCGCAGCAAAACAA 58.972 45.000 0.00 0.00 0.00 2.83
315 317 1.667154 TTGCAGCTCGCCGTCTCTAT 61.667 55.000 5.82 0.00 41.33 1.98
319 321 4.299547 TGTTGCAGCTCGCCGTCT 62.300 61.111 1.17 0.00 41.33 4.18
329 331 3.730761 GGCCGACAGCTGTTGCAG 61.731 66.667 31.04 20.11 43.05 4.41
336 338 3.003173 TAGCCTTGGCCGACAGCT 61.003 61.111 15.58 15.58 43.05 4.24
346 348 1.076332 GGCACTAACACGTAGCCTTG 58.924 55.000 0.00 0.00 42.01 3.61
347 349 0.682852 TGGCACTAACACGTAGCCTT 59.317 50.000 0.00 0.00 45.42 4.35
376 378 4.704833 TGCAGCTCCGGCAACTCC 62.705 66.667 0.00 0.00 38.54 3.85
447 449 0.323629 TCCATCTTCTTCGCCCGTTT 59.676 50.000 0.00 0.00 0.00 3.60
449 451 1.341531 CTATCCATCTTCTTCGCCCGT 59.658 52.381 0.00 0.00 0.00 5.28
455 457 3.319405 TCACCTCGCTATCCATCTTCTTC 59.681 47.826 0.00 0.00 0.00 2.87
498 500 3.483869 AGCTTCCAGGATCCCCGC 61.484 66.667 8.55 4.19 37.58 6.13
520 522 1.893919 AAAGGAGAGGACAGAGCGCC 61.894 60.000 2.29 0.00 0.00 6.53
546 548 3.767230 CGACGCGCACACAGGAAG 61.767 66.667 5.73 0.00 0.00 3.46
591 594 4.336433 CCAAATGCTGACCGTCTGATTTAT 59.664 41.667 9.44 0.00 0.00 1.40
630 633 4.498009 CGTCAGATCAACCAACTGCTTTTT 60.498 41.667 0.00 0.00 0.00 1.94
631 634 3.003689 CGTCAGATCAACCAACTGCTTTT 59.996 43.478 0.00 0.00 0.00 2.27
632 635 2.549754 CGTCAGATCAACCAACTGCTTT 59.450 45.455 0.00 0.00 0.00 3.51
633 636 2.146342 CGTCAGATCAACCAACTGCTT 58.854 47.619 0.00 0.00 0.00 3.91
634 637 1.609061 CCGTCAGATCAACCAACTGCT 60.609 52.381 0.00 0.00 0.00 4.24
635 638 0.798776 CCGTCAGATCAACCAACTGC 59.201 55.000 0.00 0.00 0.00 4.40
636 639 2.455674 TCCGTCAGATCAACCAACTG 57.544 50.000 0.00 0.00 0.00 3.16
645 648 3.094058 CGCGCGATCCGTCAGATC 61.094 66.667 28.94 0.00 46.90 2.75
707 710 4.082026 ACATGTTTTGCTATGAAGAAGGCC 60.082 41.667 0.00 0.00 0.00 5.19
715 718 3.435327 GGACGTGACATGTTTTGCTATGA 59.565 43.478 0.00 0.00 0.00 2.15
716 719 3.436704 AGGACGTGACATGTTTTGCTATG 59.563 43.478 0.00 0.00 0.00 2.23
718 1163 3.120321 AGGACGTGACATGTTTTGCTA 57.880 42.857 0.00 0.00 0.00 3.49
721 1166 2.159627 GGCTAGGACGTGACATGTTTTG 59.840 50.000 0.00 0.00 0.00 2.44
722 1167 2.224426 TGGCTAGGACGTGACATGTTTT 60.224 45.455 0.00 0.00 0.00 2.43
726 1171 1.359848 GTTGGCTAGGACGTGACATG 58.640 55.000 0.00 0.00 0.00 3.21
727 1172 0.108804 CGTTGGCTAGGACGTGACAT 60.109 55.000 0.00 0.00 34.75 3.06
898 1345 2.010145 CACGTCTGGTGGTATGAAGG 57.990 55.000 0.00 0.00 43.16 3.46
982 1429 0.179056 ATCAGCGGGGTAAACGGATG 60.179 55.000 0.00 0.00 0.00 3.51
998 1445 1.063616 GAGACGCGGCGCTATATATCA 59.936 52.381 30.54 0.00 0.00 2.15
1084 1538 1.035932 ACCACAGTAGGATCGGACGG 61.036 60.000 0.00 0.00 0.00 4.79
1104 1558 2.033424 GCTCTTCCATTGATTAACCGCC 59.967 50.000 0.00 0.00 0.00 6.13
1105 1559 2.945668 AGCTCTTCCATTGATTAACCGC 59.054 45.455 0.00 0.00 0.00 5.68
1107 1561 4.271291 GTCGAGCTCTTCCATTGATTAACC 59.729 45.833 12.85 0.00 0.00 2.85
1172 1634 3.336715 CTGGTCATCGTCGGCGTGA 62.337 63.158 10.18 10.04 39.49 4.35
1535 2000 2.651455 AGGACGTGTCATCCTTCGATA 58.349 47.619 0.00 0.00 44.64 2.92
1561 2037 2.158385 ACAAATTGAAGTGGTAGCCCCA 60.158 45.455 0.00 0.00 42.51 4.96
1562 2038 2.525368 ACAAATTGAAGTGGTAGCCCC 58.475 47.619 0.00 0.00 0.00 5.80
1563 2039 4.585879 TCTACAAATTGAAGTGGTAGCCC 58.414 43.478 2.44 0.00 33.26 5.19
1564 2040 5.880332 TGATCTACAAATTGAAGTGGTAGCC 59.120 40.000 2.44 0.00 33.26 3.93
1565 2041 6.818644 TCTGATCTACAAATTGAAGTGGTAGC 59.181 38.462 2.44 0.00 33.26 3.58
1566 2042 8.777865 TTCTGATCTACAAATTGAAGTGGTAG 57.222 34.615 0.00 0.90 34.25 3.18
1568 2044 8.517878 CATTTCTGATCTACAAATTGAAGTGGT 58.482 33.333 0.00 0.00 0.00 4.16
1569 2045 7.972277 CCATTTCTGATCTACAAATTGAAGTGG 59.028 37.037 0.00 0.00 34.98 4.00
1570 2046 8.517878 ACCATTTCTGATCTACAAATTGAAGTG 58.482 33.333 0.00 0.00 0.00 3.16
1571 2047 8.641498 ACCATTTCTGATCTACAAATTGAAGT 57.359 30.769 0.00 0.00 0.00 3.01
1572 2048 8.733458 TGACCATTTCTGATCTACAAATTGAAG 58.267 33.333 0.00 0.00 0.00 3.02
1573 2049 8.634335 TGACCATTTCTGATCTACAAATTGAA 57.366 30.769 0.00 0.00 0.00 2.69
1574 2050 8.634335 TTGACCATTTCTGATCTACAAATTGA 57.366 30.769 0.00 0.00 0.00 2.57
1575 2051 9.865321 ATTTGACCATTTCTGATCTACAAATTG 57.135 29.630 0.00 0.00 33.63 2.32
1576 2052 9.865321 CATTTGACCATTTCTGATCTACAAATT 57.135 29.630 0.00 0.00 34.65 1.82
1577 2053 8.472413 CCATTTGACCATTTCTGATCTACAAAT 58.528 33.333 0.00 0.00 36.38 2.32
1578 2054 7.669304 TCCATTTGACCATTTCTGATCTACAAA 59.331 33.333 0.00 0.00 0.00 2.83
1579 2055 7.174413 TCCATTTGACCATTTCTGATCTACAA 58.826 34.615 0.00 0.00 0.00 2.41
1580 2056 6.720309 TCCATTTGACCATTTCTGATCTACA 58.280 36.000 0.00 0.00 0.00 2.74
1581 2057 7.814264 ATCCATTTGACCATTTCTGATCTAC 57.186 36.000 0.00 0.00 0.00 2.59
1582 2058 8.827832 AAATCCATTTGACCATTTCTGATCTA 57.172 30.769 0.00 0.00 0.00 1.98
1583 2059 7.729124 AAATCCATTTGACCATTTCTGATCT 57.271 32.000 0.00 0.00 0.00 2.75
1597 2073 3.255642 ACAGACCGGTTCAAATCCATTTG 59.744 43.478 9.42 5.77 46.39 2.32
1598 2074 3.496331 ACAGACCGGTTCAAATCCATTT 58.504 40.909 9.42 0.00 0.00 2.32
1599 2075 3.154827 ACAGACCGGTTCAAATCCATT 57.845 42.857 9.42 0.00 0.00 3.16
1600 2076 2.879103 ACAGACCGGTTCAAATCCAT 57.121 45.000 9.42 0.00 0.00 3.41
1601 2077 2.610976 CGTACAGACCGGTTCAAATCCA 60.611 50.000 9.42 0.00 0.00 3.41
1602 2078 1.997606 CGTACAGACCGGTTCAAATCC 59.002 52.381 9.42 0.00 0.00 3.01
1603 2079 2.410730 CACGTACAGACCGGTTCAAATC 59.589 50.000 9.42 0.00 0.00 2.17
1604 2080 2.409975 CACGTACAGACCGGTTCAAAT 58.590 47.619 9.42 0.00 0.00 2.32
1605 2081 1.538634 CCACGTACAGACCGGTTCAAA 60.539 52.381 9.42 0.00 0.00 2.69
1606 2082 0.032403 CCACGTACAGACCGGTTCAA 59.968 55.000 9.42 0.00 0.00 2.69
1607 2083 1.661480 CCACGTACAGACCGGTTCA 59.339 57.895 9.42 0.00 0.00 3.18
1608 2084 1.735559 GCCACGTACAGACCGGTTC 60.736 63.158 9.42 1.59 0.00 3.62
1609 2085 1.823169 ATGCCACGTACAGACCGGTT 61.823 55.000 9.42 0.00 0.00 4.44
1610 2086 2.221906 GATGCCACGTACAGACCGGT 62.222 60.000 6.92 6.92 0.00 5.28
1611 2087 1.518572 GATGCCACGTACAGACCGG 60.519 63.158 0.00 0.00 0.00 5.28
1612 2088 0.389296 TTGATGCCACGTACAGACCG 60.389 55.000 0.00 0.00 0.00 4.79
1613 2089 1.933853 GATTGATGCCACGTACAGACC 59.066 52.381 0.00 0.00 0.00 3.85
1614 2090 2.893637 AGATTGATGCCACGTACAGAC 58.106 47.619 0.00 0.00 0.00 3.51
1615 2091 3.699538 ACTAGATTGATGCCACGTACAGA 59.300 43.478 0.00 0.00 0.00 3.41
1616 2092 4.045104 GACTAGATTGATGCCACGTACAG 58.955 47.826 0.00 0.00 0.00 2.74
1617 2093 3.699538 AGACTAGATTGATGCCACGTACA 59.300 43.478 0.00 0.00 0.00 2.90
1618 2094 4.308899 AGACTAGATTGATGCCACGTAC 57.691 45.455 0.00 0.00 0.00 3.67
1619 2095 6.004574 AGATAGACTAGATTGATGCCACGTA 58.995 40.000 0.00 0.00 0.00 3.57
1620 2096 4.830046 AGATAGACTAGATTGATGCCACGT 59.170 41.667 0.00 0.00 0.00 4.49
1621 2097 5.384063 AGATAGACTAGATTGATGCCACG 57.616 43.478 0.00 0.00 0.00 4.94
1622 2098 8.292444 AGATAGATAGACTAGATTGATGCCAC 57.708 38.462 0.00 0.00 34.35 5.01
1623 2099 9.625747 CTAGATAGATAGACTAGATTGATGCCA 57.374 37.037 0.00 0.00 36.65 4.92
1624 2100 9.627123 ACTAGATAGATAGACTAGATTGATGCC 57.373 37.037 0.00 0.00 37.58 4.40
1642 2118 9.260166 GCTTACGCGTACTAAATTACTAGATAG 57.740 37.037 20.44 8.70 0.00 2.08
1643 2119 8.773645 TGCTTACGCGTACTAAATTACTAGATA 58.226 33.333 20.44 0.00 39.65 1.98
1644 2120 7.589221 GTGCTTACGCGTACTAAATTACTAGAT 59.411 37.037 20.44 0.00 39.65 1.98
1645 2121 6.907212 GTGCTTACGCGTACTAAATTACTAGA 59.093 38.462 20.44 0.00 39.65 2.43
1646 2122 6.129872 CGTGCTTACGCGTACTAAATTACTAG 60.130 42.308 20.44 10.56 44.66 2.57
1647 2123 5.676744 CGTGCTTACGCGTACTAAATTACTA 59.323 40.000 20.44 0.00 44.66 1.82
1648 2124 4.496895 CGTGCTTACGCGTACTAAATTACT 59.503 41.667 20.44 0.00 44.66 2.24
1649 2125 4.730368 CGTGCTTACGCGTACTAAATTAC 58.270 43.478 20.44 10.11 44.66 1.89
1650 2126 4.997171 CGTGCTTACGCGTACTAAATTA 57.003 40.909 20.44 0.85 44.66 1.40
1651 2127 3.894351 CGTGCTTACGCGTACTAAATT 57.106 42.857 20.44 0.00 44.66 1.82
1661 2137 2.452006 ATTTATGCACGTGCTTACGC 57.548 45.000 37.59 14.19 42.66 4.42
1662 2138 3.063452 AGGAATTTATGCACGTGCTTACG 59.937 43.478 37.59 2.62 42.66 3.18
1663 2139 4.588278 GAGGAATTTATGCACGTGCTTAC 58.412 43.478 37.59 24.79 42.66 2.34
1664 2140 3.308595 CGAGGAATTTATGCACGTGCTTA 59.691 43.478 37.59 31.94 42.66 3.09
1667 2143 1.663643 TCGAGGAATTTATGCACGTGC 59.336 47.619 33.11 33.11 42.50 5.34
1682 2158 5.140177 GCACGCATAAGATTATTTTCGAGG 58.860 41.667 0.00 0.00 0.00 4.63
1686 2162 5.963004 TGAACGCACGCATAAGATTATTTTC 59.037 36.000 0.00 0.00 0.00 2.29
1690 2166 5.236263 TCATTGAACGCACGCATAAGATTAT 59.764 36.000 0.00 0.00 0.00 1.28
1694 2170 2.342179 TCATTGAACGCACGCATAAGA 58.658 42.857 0.00 0.00 0.00 2.10
1695 2171 2.804421 TCATTGAACGCACGCATAAG 57.196 45.000 0.00 0.00 0.00 1.73
1698 2174 3.065233 ACATATTCATTGAACGCACGCAT 59.935 39.130 0.15 0.00 0.00 4.73
1699 2175 2.418280 ACATATTCATTGAACGCACGCA 59.582 40.909 0.15 0.00 0.00 5.24
1700 2176 3.051606 ACATATTCATTGAACGCACGC 57.948 42.857 0.15 0.00 0.00 5.34
1701 2177 6.418141 TCATAACATATTCATTGAACGCACG 58.582 36.000 0.15 0.00 0.00 5.34
1757 2242 1.271871 ACTTGGTGCAAATCCCATCGA 60.272 47.619 0.00 0.00 0.00 3.59
1758 2243 1.176527 ACTTGGTGCAAATCCCATCG 58.823 50.000 0.00 0.00 0.00 3.84
1759 2244 2.094026 GGAACTTGGTGCAAATCCCATC 60.094 50.000 0.00 0.00 0.00 3.51
1763 2272 1.243902 TCGGAACTTGGTGCAAATCC 58.756 50.000 0.00 0.00 0.00 3.01
1768 2277 0.394488 TTGGTTCGGAACTTGGTGCA 60.394 50.000 19.40 6.06 0.00 4.57
1779 2288 7.521871 AGATAAGTAGTATACCTTGGTTCGG 57.478 40.000 0.00 0.00 44.47 4.30
1785 2294 6.641314 CACGGCAAGATAAGTAGTATACCTTG 59.359 42.308 0.00 5.47 44.47 3.61
1786 2295 6.323225 ACACGGCAAGATAAGTAGTATACCTT 59.677 38.462 0.00 0.00 44.47 3.50
1787 2296 5.832060 ACACGGCAAGATAAGTAGTATACCT 59.168 40.000 0.00 0.00 44.47 3.08
1788 2297 5.919141 CACACGGCAAGATAAGTAGTATACC 59.081 44.000 0.00 0.00 44.47 2.73
1789 2298 6.732154 TCACACGGCAAGATAAGTAGTATAC 58.268 40.000 0.00 0.00 43.47 1.47
1790 2299 6.769341 TCTCACACGGCAAGATAAGTAGTATA 59.231 38.462 0.00 0.00 0.00 1.47
1791 2300 5.593095 TCTCACACGGCAAGATAAGTAGTAT 59.407 40.000 0.00 0.00 0.00 2.12
1792 2301 4.945543 TCTCACACGGCAAGATAAGTAGTA 59.054 41.667 0.00 0.00 0.00 1.82
1793 2302 3.762288 TCTCACACGGCAAGATAAGTAGT 59.238 43.478 0.00 0.00 0.00 2.73
1800 2309 3.005554 CAGAATTCTCACACGGCAAGAT 58.994 45.455 4.57 0.00 0.00 2.40
1814 2323 8.020819 TCGTTTGACCAATATTTGACAGAATTC 58.979 33.333 0.00 0.00 0.00 2.17
1820 2329 5.009110 TGCTTCGTTTGACCAATATTTGACA 59.991 36.000 0.00 0.00 0.00 3.58
1825 2334 5.705609 ACTTGCTTCGTTTGACCAATATT 57.294 34.783 0.00 0.00 0.00 1.28
1826 2335 5.705609 AACTTGCTTCGTTTGACCAATAT 57.294 34.783 0.00 0.00 0.00 1.28
1827 2336 5.508200 AAACTTGCTTCGTTTGACCAATA 57.492 34.783 0.00 0.00 33.64 1.90
1828 2337 4.385358 AAACTTGCTTCGTTTGACCAAT 57.615 36.364 0.00 0.00 33.64 3.16
1829 2338 3.859411 AAACTTGCTTCGTTTGACCAA 57.141 38.095 0.00 0.00 33.64 3.67
1830 2339 3.690139 TGTAAACTTGCTTCGTTTGACCA 59.310 39.130 8.24 2.09 36.18 4.02
1853 2362 3.118592 ACCAATGACGGAATTCTCTCCTC 60.119 47.826 5.23 0.00 32.82 3.71
1854 2363 2.840651 ACCAATGACGGAATTCTCTCCT 59.159 45.455 5.23 0.00 32.82 3.69
1861 2370 3.517901 TCCTACTGACCAATGACGGAATT 59.482 43.478 0.00 0.00 0.00 2.17
1862 2371 3.104512 TCCTACTGACCAATGACGGAAT 58.895 45.455 0.00 0.00 0.00 3.01
1863 2372 2.232941 GTCCTACTGACCAATGACGGAA 59.767 50.000 0.00 0.00 38.09 4.30
1864 2373 1.822990 GTCCTACTGACCAATGACGGA 59.177 52.381 0.00 0.00 38.09 4.69
1865 2374 1.548719 TGTCCTACTGACCAATGACGG 59.451 52.381 0.00 0.00 43.78 4.79
1867 2376 4.804139 CGTATTGTCCTACTGACCAATGAC 59.196 45.833 0.00 0.00 43.78 3.06
1868 2377 4.679639 GCGTATTGTCCTACTGACCAATGA 60.680 45.833 0.00 0.00 43.78 2.57
1869 2378 3.555956 GCGTATTGTCCTACTGACCAATG 59.444 47.826 0.00 0.00 43.78 2.82
1871 2380 2.416296 CGCGTATTGTCCTACTGACCAA 60.416 50.000 0.00 0.00 43.78 3.67
1872 2381 1.133598 CGCGTATTGTCCTACTGACCA 59.866 52.381 0.00 0.00 43.78 4.02
1874 2383 2.182825 CACGCGTATTGTCCTACTGAC 58.817 52.381 13.44 0.00 44.72 3.51
1879 2430 2.081725 TTTGCACGCGTATTGTCCTA 57.918 45.000 13.44 0.00 0.00 2.94
1881 2432 2.700694 GTATTTGCACGCGTATTGTCC 58.299 47.619 13.44 0.00 0.00 4.02
1882 2433 2.222640 ACGTATTTGCACGCGTATTGTC 60.223 45.455 13.44 0.00 45.77 3.18
1889 2440 0.579722 CGTGTACGTATTTGCACGCG 60.580 55.000 19.21 13.02 45.86 6.01
1890 2441 3.177468 CGTGTACGTATTTGCACGC 57.823 52.632 19.21 5.61 45.86 5.34
1904 2455 1.195448 CGGAGTAAGTCGTGTACGTGT 59.805 52.381 0.00 0.00 40.80 4.49
1925 2478 2.197324 CTCTAGCCCTCCGAGCCT 59.803 66.667 0.00 0.00 0.00 4.58
2046 2634 2.409241 GATCGGAGGAGTAGTGGCGC 62.409 65.000 0.00 0.00 0.00 6.53
2126 2714 0.329596 CTGTGGAAGGAAGGGGAAGG 59.670 60.000 0.00 0.00 0.00 3.46
2127 2715 0.322906 GCTGTGGAAGGAAGGGGAAG 60.323 60.000 0.00 0.00 0.00 3.46
2128 2716 1.065410 TGCTGTGGAAGGAAGGGGAA 61.065 55.000 0.00 0.00 0.00 3.97
2129 2717 1.463214 TGCTGTGGAAGGAAGGGGA 60.463 57.895 0.00 0.00 0.00 4.81
2130 2718 1.303643 GTGCTGTGGAAGGAAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
2131 2719 0.890996 GTGTGCTGTGGAAGGAAGGG 60.891 60.000 0.00 0.00 0.00 3.95
2132 2720 0.890996 GGTGTGCTGTGGAAGGAAGG 60.891 60.000 0.00 0.00 0.00 3.46
2133 2721 0.109342 AGGTGTGCTGTGGAAGGAAG 59.891 55.000 0.00 0.00 0.00 3.46
2134 2722 1.071699 GTAGGTGTGCTGTGGAAGGAA 59.928 52.381 0.00 0.00 0.00 3.36
2192 2780 3.407967 CCGGGAAGGCAAGGGCTA 61.408 66.667 0.00 0.00 37.50 3.93
2267 2858 1.069090 GTGGTCGGAGTTGTGCTGA 59.931 57.895 0.00 0.00 0.00 4.26
2321 2921 3.495001 GCGAGGATAGCTTTGTTATGTCC 59.505 47.826 0.00 0.00 32.35 4.02
2327 2927 0.462047 CCGGCGAGGATAGCTTTGTT 60.462 55.000 9.30 0.00 45.00 2.83
2328 2928 1.144057 CCGGCGAGGATAGCTTTGT 59.856 57.895 9.30 0.00 45.00 2.83
2423 3023 2.661537 CTGCAGTCGTCGTTGCCA 60.662 61.111 17.38 8.34 39.54 4.92
2616 3216 3.603158 TTTCTCGATGAATCCGGTCAA 57.397 42.857 0.00 0.00 34.24 3.18
2650 3250 0.466543 TATACCCACATCCACGGTGC 59.533 55.000 1.68 0.00 34.94 5.01
2665 3266 3.318839 TCCCAAGCAATGCAGCAATATAC 59.681 43.478 8.35 0.00 36.85 1.47
2675 3276 1.212751 GGACGTTCCCAAGCAATGC 59.787 57.895 0.00 0.00 0.00 3.56
2693 3294 0.798159 CACACACGTCCATGGACATG 59.202 55.000 37.42 35.47 44.77 3.21
2694 3295 0.684535 TCACACACGTCCATGGACAT 59.315 50.000 37.42 25.81 44.77 3.06
2695 3296 0.466124 TTCACACACGTCCATGGACA 59.534 50.000 37.42 18.51 44.77 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.