>input_sequence_70176
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------ATATATAGCGCCGCGTCTCGAGCACTGCTCCATCGCAGCTCTGGGCACGCCTCCTCCCGGCTCTCGCCAGTGCC
AGCCG-------CCACCCCGTCCGATCCTACTGTGGTGGCG--------GTTAATCAATGGAAGAGCTCGACGAGTTCGA
GGTGCTCTGGCCGGAGTACTACGTGGGCCACGCTCACGCCGACGATGACCAGTACAAGACGCCGGCGCCGGCGTCGGCGA
GCGTGCAGAGCCCGGCCACGTCGTGGCAGCGGCGCGCGGCACGGTCTCGGCCGGTGGACGTTCCTCCCACTCCCAGCAGG
GCCGCCGTGCTGTTGCTACGGTGGAAAGACGGCACTGATCGTCAAGACGACTTGGCGGAGAAGGACGGCGGC---GGCAA
GATCGTCGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTCTCCGACGGGGAGGCCGCCGCGGCGTACACGCTGCTGC
GGTCGGGGGCGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTT
ATCGAAGGATGACACGTCCT-----------ATGTTTGGGGCTACCACTTCAATTTGTAGATCAGAAATGGTCAAATGGA
TTTGAACCGGTCTGTACGTGGCATCAATCTAGTCTATCTATCTAGTAATTTAGTACGCGTAAGCACGTGCATAAATTCCT
CGAAAATAATCTTATGCGTGCGTTCAATGAATATGTTATGAAAGTGCAAAAGA---------------------------
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>chr1A_1_TraesCS1A01G350900
GAGGAGTTGCAACTAGTGATCTGATTTGCTAGAACCGGCAAACGGTATTGCTAGAACTAGGGAGTGAGCCAATGATGATG
GGGCGCGAGAATGTTGCAACCACGATGCTGAATTGCTGGAACCGGCAACGGCAGAAGCTAGCAACCCGCAGCGCCGTCGC
ATTTTTTGCTGCAACCGGCAAACTGAAATGGTACAACCGATGAGTTGTTTTGCTGCGATGGTGACTGTGGGAATGGTGAC
CCAGTAGACGACGGCGGTGCGTGTGGCAAGCGTCGACGACGAGGACGGC-GGAGGGTGGTGCACCATGCTGCAACCATAG
AGACGGCGAGCTGCAACAGCTGTCGGCCAAGGCTACGTGTTAGTGCCATCCACGGCTGGAGTTGCCGGAGCTGCAAGCAG
CCATGGCCGAACCACCGCCCGGCGACAGCGGGGTGCTGCAGGGAGGGCAAACGGGCGAAGAAGATGGATAGCGAGGTGAC
GGGGAGGGGGCAGCGACGCGCGGGGATCCTGGAAGCTGGGCGGCGCTCTGTCCTCTCCTTTTTTTTTCTTCCTG-TGTGC
GCGTCGGGGAAGATGAAGTAAGGGGCGAAAGGAATAAATCAGACGGTCAGCATTTGGTTGATCTTTGCTAAAAAAAAGCA
GTTGGTTGATCTGACGGATCGCGCGCGACCGGCCTGAAATATTCGGCCGGCCAGCCGGCGCCTAGCGCGGGCCTTCTTC-
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-----------------------------------------ATAGCAAAACATGTCACGTCCTAGCCAACGCATGCACAT
ACGCGCGGGTGCTGA-TGACGCCGCGAGCACGGCATGGATGCACGTTGCGTGCCCCAGAGGGAGAAGCGCGTGTGTGATC
CCGGCGCCGCGTCCGGAGCCCGCGGCGGGACGGCGCCAACGGGATCCACACCTCTC-CCCACCGCCTTCATACCACCAGA
CGTGCGGACTCCGTCGAGCGAGCGCCCGGCCGCCGTCGCGATCGACCAGACGCGGTGGGACGGAATGCCATCCGTTTACC
CCGCTGATATATAGCGCCGCGTCTCGAGCACTGCTCCATCGCAGCTCTGGGCACGCCTCCTCCCGGCTCTCGCCAGTGCC
AGCCG-------CCACCCCGTCCGATCCTACTGTGGTGGCG--------GTTAATCAATGGAAGAGCTCGACGAGTTCGA
GGTGCTCTGGCCGGAGTACTACGTGGGCCACGCTCACGCCGACGATGACCAGTACAAGACGCCGGCGCCGGCGTCGGCGA
GCGTGCAGAGCCCGGCCACGTCGTGGCAGCGGCGCGCGGCACGGTCTCGGCCGGTGGACGTTCCTCCCACTCCCAGCAGG
GCCGCCGTGCTGTTGCTACGGTGGAAAGACGGCACTGATCGTCAAGACGACTTGGCGGAGAAGGACGGCGGC---GGCAA
GATCGTCGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTCTCCGACGGGGAGGCCGCCGCGGCGTACACGCTGCTGC
GGTCGGGGGCGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTT
ATCGAAGGATGACACGTCCT-----------ATGTTTGGGGCTACCACTTCAATTTGTAGATCAGAAATGGTCAAATGGA
TTTGAACCGGTCTGTACGTGGCATCAATCTAGTCTATCTATCTAGTAATTTAGTACGCGTAAGCACGTGCATAAATTCCT
CGAAAATAATCTTATGCGTGCGTTCAATGAATATGTTATGAAAGTGCAAAAGAAAAAAAAAACTTGTTGC---------T
ATCG------------------------ATGGGATTTGCACCAAGTTCCGAACCAAGGTATACTACTTATCTTGCCGTGT
GAGAATTCTGTCAAATATTGGTCAAACGAAGCAAGTTTACAGAGGAGAGAATTCCGTCATTGG-----------------
-------------------------TCAGTAGGACAATACGCGTGCAAATACGTACA--CGTACACGACTTACTCCGAGG
CTCGGAGGGCTAGAGCGAGCTTGCAC-----------------------------GTCCACGTGGCAGCCGAGGATAGGG
TGCACCGCACTCCAACTCAACCCCTTCCTTCG------CAGCCACAGCCACAGCTAGCAAAGTTTGTCCTAACGCGCCAC
TACTCCTCCGATCCAGTTGCCAACTCCCCAAGGAAGTCTGCTTGCTCACCAAGACACGCCAGCTTCTCCCTCTCCTTCCC
CTTCCTTCCACAGCACACCTACCTCCGCTCGCTATATATCCCCCTCGCCATGGCAGCCCTAGCCCTTGCCTTCCCGGACA
CACGGCCGGGGAGGCCATGG---ATCAGGAGCTCCAAGAAGCCGACGTCCTCTGGCCTCAGCACAACTCCGACCACCGCC
G---------CGACGGCGACGACGGCAGCAACGTCGACGGGGACATAACAAAGCTATCCTCGCCGGAGCTGTCTGCCCCG
GTCCCCGTGCCTCACCGGAAGCGGCGGTCTCGCTCCTGGTCGACGTCCGACGGGAGCGGCAGTGGCAACGACGACTGCAG
CGACGGCGACGTCCGATGCACCAACGACGCAAAGAGGAACGTGCCGCCGCACGTCCTGGCCGAGCGGCGGCGGAGGCTCG
CCGGGAGGTCGACGGCGGCCTACTCCATGTGCAGCGGGAAAGGGAGGACGCTCAAAGGGCGGGACCTCCGCAACATCAGG
AACCTCGTCCTCAGGTTGACCGGATTCATCGAGAAATGAAATGGATTCAGCACCGT-GGATGTGGGTATATTGCTGCATT
GCTTGGGAACGTCCATGTCCATGGACGTGTGTGAAAGTTTGTGGCAACCTAATTAGAG
>chr1D_163
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--TTTTTGCAGCGACCGGCAAACGGAAATGGTACAACCGATGAGCTGTTTTGCTGCGATGGTGACCGTGGGAATGGTGAC
CCAGGAGACGACGGCGGTGCGTGTGGCGAGCGTCGACACGACAAGGACATGGAGGGTAGTGCACCATGCTGCAACCTTAG
GGACGACGAGGTGCAACCGCTGTCGGCTGAGGCTACGTGTCAGCGCCATGCACGGCTAGAGTTGCGGGAGCTGCAAGCAG
CCATGGCCGAACCAGCACCCGGCGACAACGGAGTGCTGCAGGGAGGGCGAGCGGGCAAAGAAGATGGATGACAAGGTGAG
GGGGAGGGGGCGGCGAGGCACGGGGATCTGGGAAGCTGGGCAGCGCTCTCTCCTCTCCTCTTTTTTTTCCCTTCCTGTGC
GCGTCGGGGAAGATGAAGTAAGGGGCGAAAGGA-TAAATCAGACGGTCAGCAGTTGGTTGATCTGA--------------
-------------------CGCGCGCGATCGGCCTGAAATATTCGGTCGGCCGACCGGCACCTAGCGCGCGCCTTCTCAT
AACAACTAGCAAGATGCCCGCACGGAACACGAAGATGCATTTTTTTACAAAACACCTGTTGTGATTGACTCATGCGGGAG
TAATCCCATGTGTAAAAACTAATGATATCTTGAGAAAGATGAGAGATAAGGTGAGGAGGAGTGGGACGTGGTGGTGATTG
GTGGTTGGACTGAGCGGAGGCATGGGATGGACGACACCGGCAGCGGCCATCTTGCCAGATTGTTCCAGAGGCTTCCTTTT
TTAATTGCTCAACAATGAGATTGTGTGAGATAAGGATGAACGAAGGAATGCCTTATCTGCAAATGTGGAAAGAGGTGCGG
GTATGTTTTTTATAAAATTAACATAGTTTGCTTTCTATCCGTCAGATATAGATCGGACGGTCTATATTGCAAGCTAGCTG
GCACACCATCATCATCAACTCGCTTTGTTATAAGAGTAGAGACAGAGAAATGTGTCACGTC--AGCCAACGCATGCACAT
ACGCGCGGGTGCTCAGTGACGCCCCGAACACGGCATGGATGCACGTTGCGTACCCGAGAGGGAAAAGCGCGTGTGTGATC
CCGGCGCCGCGTCCGGAGCCCGCGGCGGGACGGCGCCAACGGGATCCACACCTCTCCCCCACCGTCTTCGTTCCACCAGG
CGTGTGGACTTCGTCGAGCGAGCGCCCGGTCGCCGTCGCGATCGATCAGACGCGCGCGGTGGAATGGAA-----------
---CGGATATATAGCGCCGATTCTCGGGCACTGCTCCATCGCAGCTCTGGGCACGCCTCCTCCTGGCTCTCGCCAGTGCC
AGCCGCCACCCACCACCTCGTCCGATCCTACTGTGGACTGTGGTGG-TAGTTAATCAATGGAAGAGCTCGACGAGTTCGA
GGTGCTCTGGCCGGAGTACTGCGCCGGCCTCGCGCACGCCGACGATGACCAGTACAAGACACCGGCGGCGGCAT---CGA
GCGTGCAGAGCACGGCCACGTCGTGGCAGCGGCGCGCGGCACGGTCTCGGCCGGTGGACGTTCCTCCA------AGCAGG
GCCGCCGTGCTGTTGCTACGGTGGAAAGACGGTAATACCG---AAGATGACTCAGTGGAGAAGGACGGCGGG---GGCAA
GATCATCGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTGTCCGACGGGGAGGCCGCCGCGGCGTACACGCTGCTGC
GGTCGGGGGCGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTC
ATCGAAGGATGACACGTTGACACGTAGTACCAGGTCGTCCTATGGTTTGGGGCAC-------------------------
------------------------------------------------------------AAACACGTGCATAAATTTCT
CAAAACTAAATTTCCTTGTGCGCTCAACGAAT--GTTATCAGAGTACCC-------AGAAAACGTGTTGCTACTTGCTAT
AGTACTACCAGTTTGTTAGTATCGGTTAATGAGAATGGCACCAAGTTTCGAAC---------CTACTTGTCTTGCCGTGT
GAAAAATCAGTCATC----GGTCAAACGAAGCAAGTTTACATGGGAGAGTTCCACACTAAAGCTCATC-CCTCTACGCAC
GTTCTTACT-------ACATTCCAATGAGCACAACAA---------------------------------TAGTCCGTGG
CTCGTAGGGCTGGAGCGAGCGTGCACATCTGCATCAGCCGGCCCGGCGGTGCACGGTCCACGTGGCAGCCGAGGATAGGG
TGCACCGCACTCCAACTCAACCCCTTCCTTCACGGCCACAGCCACAGCCACAGCTAGCAAAGTTTGTCCTAACCCGCCAC
TACTCCTCCGATCCAGTTGCCAACTCCCCAAGGAAGTCTGCTTGCTCACCAAGACACGCCAGCTTCTCCCTCT-------
--TCCGTCCACAGCACACCTACCTCCGCTCGCTATATATCCCGCTCGCCATGGCAGCCCCAGCCCTTGCCTTCCCGGACA
CACGGCCGGGGAGGCCATGGATCATCAGGAGCTCCAAGAAGCCGACGTCCTCTGGCCACAACACAACTCCGACCACCGCC
GTGACGGCGCCGACGGCGACGACGGCAGCAACGTCGACGGAGACATGGCAAAGCTATCCTCGCCGGAGCTGTCTGCCCCG
GTCCTCGTGCCTCGCCGGAAGCGGCGGTCTCGCTCCTGGTCGACGTCCGACGGGAGCGGCAGCGGCAACGACGACTGCAG
CGACGGCGATGTCCGATGCACCGACGACGCAAAGAGGAACGTGCCGCCGCACGTCCTGGCTGAACGGCGGCGGAGGCTCG
CCGGAAGGTCGACGGCGGCCTACTCCATGTGCACCGGCAAAGGGAGGACGCTCAAAGGGCGGGACCTTCGCAACATCAGG
AACCTCGTCCTCAGGATGACCGGATTCATCGAGAAATGAAATGGACTCAACACCGTGGGATGTGGATACATTGCTTCGT-
---------C------GTCCATGGACGTGTGTGAAAGTTTGTGGCAACCTAATTA---
>chr1B_558
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-------------------------------------------------------------------------------C
GCGTCGGGGAAGATGAAGTAAGGGGCGAAAGGA-TAAATCCGACGGTCAGCAGTTGGTTGATCTGA--------------
-------------------CGGACCGCGCG-----------------CGACCGGCCGGCGCCTAGCGCGCACCTTCTCAT
AACAA---------------------------------------------------------------------------
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------------------------------------------------AATGTGTCACGTCCTAGCCAACGCATGCACAT
ACGCGCGGGTGCCCAGTGACGCCGCGAACACGGCATGGATGCACGTTGCGTGCCCCAGAGGGAGAAGCGCGTGTGTGATC
CCGGCGCCGCGTCCGGAGCCCGCGGCGGGACGGCGCCAACGGGATCCACACCTCTCCCCCACCGTCTCCATACCACCAGA
CGTGCGGGCTCTGTCGAGCGAGCGCCCGGCCGCCGTCGCGATCGACCAGACGCGGTGGGACGGAATACTATCCGTTCACC
CCGCGGATATATAGCGCCGCGTCTCGAGCACTGCTCCGTCGCAGCTCTGGGCACGCCTCCTCCTGGCTCTCGCCAGTGCC
AGCCG-------CCACCTCGTCCGATCCTACTTTGGTCACAGTTAAATAGTTAATCAATGGAAGAGCTCGACGAGTTCGA
GGTGCTCTGGCCGGAGTACTACGCCGGCCACGCCCACGCCGACGATGACCACAAGCCACTGC---------------CGA
GCGTGCAGAGCCCGGCCACGTCGTGGCAGCGGCGCGCGGCAGGGTCTCGGCCGGTGGACGTTCCC------CCCAGCAGG
GCCGCCGTGCTGTTGCTACGGTGGAAAGACGGTACTGATCATCAAGACGACTTGATGGAGAAGGACGGCGGCGGCGGCAA
GATCATGGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTGTCCGACGGGGAGGCCGCCGCGGCGTACACGCTGCTGC
GGTCGGGGGTGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTC
ATCGAAGGATGACACGTACT-----------AGGTCGTCCTATGGTTTGGGGCAC-------------------------
------------------------------------------------------------AAACACGTGCATAAATTTCT
CAAAATTAAATTTCCTTGTGCGCTCAACGAAT--GTTATCAGAGTGCCC-------AAAAAACTTGTTGC---------T
AGTACTACCAGTTTGTCAGTATCGGTTAATGAGATTAGCACCAAGTTTTGAAC---------CTACTTTTCTTGCCGTGT
GAAAATCCAGTCATC----GGTCAAACGAAGCAAGTTTACATGGGAGAGTTCCACACTAAAGCTCATCTCCTCCACGCAC
GTTCTTACTGTACTATACATCCAAATCCGCACAACAATATACGTACCAATACGTGCATACGTACACGATTTTCTCCGTGG
CTCGGAGGGCTAGAGCGAGCGTGCACATCTGCATCAGCCGGCCCGGCGGTGCACGGTCCACGTGGCAGCCGAGGATAGGG
TGCACCGCACTCCAACTCAACCCCTTCCTTCACGGCCACAGCCACAGC------TAGCAAAGTTTGTCCTAACCCGCCAC
TACTCCTCCGATCCAGTTGCCAACTCCCCAAGGAAGTCTGCTTGCTCACCAACACACGCCAGCTTCTCCTTCT-------
--TCCTTCCACAGCACACCTACCTCCGCTCGCTATATATCCCCCTCGCCATGGCAGCCCCAGCCCTTGCCTTCCCGGACA
CACGGCCGGGGAGGCCATGG---ATCAGGAACTCCAAGAAGCCGACGTCCTCTGGCCACAGAACAACTCCGACCACCGCC
GCGACGGCGGCCACGACGACAGCGTCATCAACGTCGACGGAGACATGGCAAAGCTATCCTCGCCGGAGCTGTCTGCCCCG
GTCCTCGTGCCTCACCGGAAGCGGCGGTCACGCTCCTGGACCACGTCGGACGGGAGCGGCAGCGGCAACGACGACTGCAG
CGATGGCGACGTTCGATGCACCAACGACGCAAAGAGGAACGTGCCGCCGCACGTCCTGGCTGAGCGACGCCGGAGGCTCG
CCGGAAGGTCGACGGCGGCCTACTCCATGTGCAGCGGGAAAGGGAGGACGCTCAAAGGGCGGGACCTCCGCAACATCAGG
AACCTCGTCCTCAGGATGACCGGATTCATCGAGAAATGAGATGGGTTCAACACCGTGG-ATGTGGACATATTGCTTCATT
GCTTGGGAAC------GTCCATGGACGTGTGTGAAAGTTTGTGGCAACCTAATTAGAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-------S--S----------S--------------------S--------------------S--------------
----S----------------------S---------SSSSSSSSSSSS--------S------------------S---
S----S----S------S---------SS-----------S--S-----S-------S-------S--------------
--------------S-S----------S---S----------------S-S-----S------------SS-S------S
-----------S----S--S--------SS-----------S-------S---------S-------SSS-S-S------
---------------------------------S------------------S-----------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------------------------S-----S----------------S-------SS-
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------------------------------------------S--SS---SS----------------------------
-------------S-------------S----------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------S-------S---
----S----------------------------------------------------------S----------------
-----------------S-------------------SS-S---------------------------------------
-----------------------SS--------S---------------------------------S----S-SSS---
-------------------------------------------------------------------SSSS---------
--------------------------------S-------S--------------S------------------------
----S-------------------------------------S-------------------------------------
-------------------------------------------------------------------------------S
-----------------S--------------S--SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------S--
-S---S---SS--SSSS-----S----S----SS-----S-S-----SSSSSSSSS------------------------
-SSS---------------------------S----S----------S-----SSSSSSSSS------S-----------
--S-----S----SSSSSS----------------------SS------SSSSS-SSS-SS-S-----------------
-----------------------------S-SS------SS---S-S-------S-------------S--------S--
--------------------S-----------------------------------------------------------
-------------------------------S-----------------------------------------S------
-------------------------------------------------------------------------SSSSSSS
SS---------------------------------------------------------S--------------------
---------------------------------------------------------S----------------------
----------------------------------------S-----SS--------------------------------
----S---------------------------------------------------------S-----------------
------------------------------------------------------------S-------------------
----S---------------------------------------------------------------------------
---------------S---------------------------------S---------------S---------S----
----------SSSSSS------------------------------------------
>forward_364
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------------------------GGCCAAGGCTACGTGTTAGT------------------------------------
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>reverse_2082
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-TTGAACCGGTCTGTACGTGG-----------------------------------------------------------
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>forward_1558
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------------------CGTCCGATCCTACTGTGGTG------------------------------------------
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>reverse_2721
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CTTCCTTCCACAGCACACCT------------------------------------------------------------
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