Multiple sequence alignment - TraesCS1A01G339700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G339700 chr1A 100.000 2991 0 0 1 2991 530179267 530176277 0.000000e+00 5524.0
1 TraesCS1A01G339700 chr1D 93.809 1373 54 19 735 2101 431711337 431709990 0.000000e+00 2036.0
2 TraesCS1A01G339700 chr1D 93.734 383 19 1 2577 2959 431709593 431709216 1.200000e-158 569.0
3 TraesCS1A01G339700 chr1D 88.779 303 21 3 2118 2407 431709892 431709590 2.830000e-95 359.0
4 TraesCS1A01G339700 chr1D 86.486 259 21 4 1 246 293340095 293340352 3.800000e-69 272.0
5 TraesCS1A01G339700 chr1D 91.329 173 14 1 2406 2577 200883360 200883188 4.980000e-58 235.0
6 TraesCS1A01G339700 chr1D 91.279 172 14 1 2407 2577 2720402 2720231 1.790000e-57 233.0
7 TraesCS1A01G339700 chr1B 92.646 1387 53 28 738 2110 582912817 582911466 0.000000e+00 1951.0
8 TraesCS1A01G339700 chr1B 88.295 393 38 3 2579 2971 582910442 582910058 5.840000e-127 464.0
9 TraesCS1A01G339700 chr1B 85.278 360 47 5 287 643 62678807 62678451 1.690000e-97 366.0
10 TraesCS1A01G339700 chr1B 91.011 178 14 2 2404 2579 581232966 581233143 3.850000e-59 239.0
11 TraesCS1A01G339700 chr1B 79.739 153 24 6 2178 2323 582911066 582910914 1.470000e-18 104.0
12 TraesCS1A01G339700 chr1B 94.643 56 3 0 2118 2173 582911205 582911150 1.480000e-13 87.9
13 TraesCS1A01G339700 chr5B 91.317 357 27 4 287 643 228971230 228970878 4.480000e-133 484.0
14 TraesCS1A01G339700 chr5B 85.874 269 24 3 1 256 228971495 228971228 1.060000e-69 274.0
15 TraesCS1A01G339700 chr4D 88.720 328 33 3 287 611 238304147 238303821 6.010000e-107 398.0
16 TraesCS1A01G339700 chr4D 85.838 346 46 3 297 640 470203995 470204339 6.090000e-97 364.0
17 TraesCS1A01G339700 chr4D 81.250 128 16 4 2283 2404 319269615 319269740 2.450000e-16 97.1
18 TraesCS1A01G339700 chr7B 87.316 339 32 9 297 629 167624039 167624372 7.830000e-101 377.0
19 TraesCS1A01G339700 chrUn 84.857 350 47 5 297 643 235331409 235331755 6.140000e-92 348.0
20 TraesCS1A01G339700 chrUn 85.174 344 45 5 303 643 251282306 251281966 6.140000e-92 348.0
21 TraesCS1A01G339700 chr5D 84.419 353 50 4 295 643 241851506 241851857 2.850000e-90 342.0
22 TraesCS1A01G339700 chr5D 90.449 178 16 1 2403 2579 2786279 2786456 1.790000e-57 233.0
23 TraesCS1A01G339700 chr5D 83.721 129 10 6 2285 2407 78407835 78407712 8.760000e-21 111.0
24 TraesCS1A01G339700 chr3A 84.571 350 49 5 297 643 347580895 347581242 2.850000e-90 342.0
25 TraesCS1A01G339700 chr3A 80.645 434 63 13 1566 1994 502841806 502841389 1.730000e-82 316.0
26 TraesCS1A01G339700 chr3D 80.510 431 66 10 1566 1994 378929592 378929178 6.220000e-82 315.0
27 TraesCS1A01G339700 chr3B 86.477 281 38 0 1566 1846 494076318 494076038 2.900000e-80 309.0
28 TraesCS1A01G339700 chr7D 90.860 186 16 1 2408 2592 152309734 152309549 6.400000e-62 248.0
29 TraesCS1A01G339700 chr7D 92.045 176 13 1 2407 2581 29807294 29807469 2.300000e-61 246.0
30 TraesCS1A01G339700 chr7D 90.710 183 13 4 2404 2583 409488197 409488378 1.070000e-59 241.0
31 TraesCS1A01G339700 chr7D 80.451 133 19 3 2293 2420 536516201 536516071 8.830000e-16 95.3
32 TraesCS1A01G339700 chr7A 91.620 179 12 3 2404 2580 700813208 700813385 8.280000e-61 244.0
33 TraesCS1A01G339700 chr2A 89.560 182 17 2 2404 2583 721644312 721644131 2.320000e-56 230.0
34 TraesCS1A01G339700 chr5A 81.648 267 25 10 11 257 671354149 671353887 1.820000e-47 200.0
35 TraesCS1A01G339700 chr5A 81.061 132 16 5 2283 2407 692767596 692767725 2.450000e-16 97.1
36 TraesCS1A01G339700 chr6D 82.946 129 15 3 2285 2407 157676798 157676925 3.150000e-20 110.0
37 TraesCS1A01G339700 chr4A 87.000 100 7 3 2278 2372 642955433 642955531 1.130000e-19 108.0
38 TraesCS1A01G339700 chr4A 82.645 121 12 5 2283 2396 121480199 121480317 6.820000e-17 99.0
39 TraesCS1A01G339700 chr6A 82.308 130 11 8 2283 2404 37060716 37060591 5.270000e-18 102.0
40 TraesCS1A01G339700 chr4B 81.679 131 16 4 2283 2407 396716034 396716162 5.270000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G339700 chr1A 530176277 530179267 2990 True 5524.000 5524 100.000000 1 2991 1 chr1A.!!$R1 2990
1 TraesCS1A01G339700 chr1D 431709216 431711337 2121 True 988.000 2036 92.107333 735 2959 3 chr1D.!!$R3 2224
2 TraesCS1A01G339700 chr1B 582910058 582912817 2759 True 651.725 1951 88.830750 738 2971 4 chr1B.!!$R2 2233
3 TraesCS1A01G339700 chr5B 228970878 228971495 617 True 379.000 484 88.595500 1 643 2 chr5B.!!$R1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 691 0.037697 TAGCATTGCTCGGTGAACGT 60.038 50.0 15.81 0.0 44.69 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2144 0.106519 AGGGAGCAAGCAAACAGTGT 60.107 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 6.475596 AGCATGGAAGCTTAATTAATTGCT 57.524 33.333 11.05 8.88 43.70 3.91
48 50 6.278363 AGCATGGAAGCTTAATTAATTGCTG 58.722 36.000 11.05 2.48 43.70 4.41
51 53 7.682741 GCATGGAAGCTTAATTAATTGCTGAGA 60.683 37.037 11.05 0.79 35.79 3.27
74 76 9.374838 GAGAAAATTTCTACCTTCGTATGGTAA 57.625 33.333 8.38 0.00 40.87 2.85
89 91 4.728102 TAAGTGGTCGGCCGTGCG 62.728 66.667 27.15 0.00 37.67 5.34
94 96 3.781162 GGTCGGCCGTGCGTTAAC 61.781 66.667 27.15 13.96 0.00 2.01
115 129 4.666512 ACTATTCTGTTGTTTCCCAGCAT 58.333 39.130 0.00 0.00 33.49 3.79
126 140 1.766494 TCCCAGCATATGCACCTTTG 58.234 50.000 28.62 17.18 45.16 2.77
156 170 5.832595 TGTTTTCTTTCATCCATGAAGACCA 59.167 36.000 0.00 0.00 46.34 4.02
161 175 3.565764 TCATCCATGAAGACCACCATC 57.434 47.619 0.00 0.00 33.08 3.51
208 222 1.491670 CCGACTATGAAGCGATGGTG 58.508 55.000 0.00 0.00 0.00 4.17
213 227 2.102588 ACTATGAAGCGATGGTGGTACC 59.897 50.000 4.43 4.43 39.22 3.34
219 233 1.559682 AGCGATGGTGGTACCTTCAAT 59.440 47.619 14.36 5.38 41.14 2.57
246 260 2.154462 CCACCATCTGCTTCGTTTTCT 58.846 47.619 0.00 0.00 0.00 2.52
249 263 3.250762 CACCATCTGCTTCGTTTTCTCAA 59.749 43.478 0.00 0.00 0.00 3.02
258 272 9.817809 TCTGCTTCGTTTTCTCAATTATATACT 57.182 29.630 0.00 0.00 0.00 2.12
260 274 9.042008 TGCTTCGTTTTCTCAATTATATACTCC 57.958 33.333 0.00 0.00 0.00 3.85
261 275 8.215132 GCTTCGTTTTCTCAATTATATACTCCG 58.785 37.037 0.00 0.00 0.00 4.63
262 276 7.633361 TCGTTTTCTCAATTATATACTCCGC 57.367 36.000 0.00 0.00 0.00 5.54
263 277 6.361481 TCGTTTTCTCAATTATATACTCCGCG 59.639 38.462 0.00 0.00 0.00 6.46
264 278 6.399669 CGTTTTCTCAATTATATACTCCGCGG 60.400 42.308 22.12 22.12 0.00 6.46
265 279 5.717078 TTCTCAATTATATACTCCGCGGT 57.283 39.130 27.15 9.68 0.00 5.68
266 280 5.055642 TCTCAATTATATACTCCGCGGTG 57.944 43.478 27.15 25.86 0.00 4.94
267 281 4.082408 TCTCAATTATATACTCCGCGGTGG 60.082 45.833 28.94 22.41 40.09 4.61
268 282 3.575256 TCAATTATATACTCCGCGGTGGT 59.425 43.478 28.94 26.23 39.52 4.16
269 283 3.587797 ATTATATACTCCGCGGTGGTG 57.412 47.619 28.94 17.90 39.52 4.17
270 284 1.250328 TATATACTCCGCGGTGGTGG 58.750 55.000 28.94 15.57 45.56 4.61
271 285 0.757935 ATATACTCCGCGGTGGTGGT 60.758 55.000 28.94 19.73 44.47 4.16
272 286 1.386525 TATACTCCGCGGTGGTGGTC 61.387 60.000 28.94 0.00 44.47 4.02
301 315 6.295249 TGATGGGAGTATATTTTGCGAATCA 58.705 36.000 0.00 0.00 0.00 2.57
317 331 7.889589 TGCGAATCATTATCTTATGTCGATT 57.110 32.000 0.00 0.00 30.15 3.34
435 449 3.751175 TGTGGTGTTGTGCTTTATCTAGC 59.249 43.478 0.00 0.00 41.59 3.42
449 463 8.870116 TGCTTTATCTAGCTGGAATAATAGTCA 58.130 33.333 3.02 0.00 41.76 3.41
523 537 5.928153 ACTCGAAATTGTTACAAGCTAAGC 58.072 37.500 3.63 0.00 0.00 3.09
575 589 3.321497 CTTCACTTAGTTTGAGCTCGCT 58.679 45.455 9.64 9.64 0.00 4.93
598 612 7.517417 CGCTCGAATTTTAATATGAGTTGAGCT 60.517 37.037 12.59 0.00 41.18 4.09
622 636 0.179240 CATGTGCAACTCGCTCGAAC 60.179 55.000 0.00 0.00 43.06 3.95
625 639 1.729484 TGCAACTCGCTCGAACTCG 60.729 57.895 0.00 0.00 43.06 4.18
629 643 0.592148 AACTCGCTCGAACTCGACTT 59.408 50.000 0.00 0.00 44.22 3.01
643 657 1.202710 TCGACTTGTTTGCAGCCCTAA 60.203 47.619 0.00 0.00 0.00 2.69
644 658 1.606668 CGACTTGTTTGCAGCCCTAAA 59.393 47.619 0.00 0.00 0.00 1.85
645 659 2.604614 CGACTTGTTTGCAGCCCTAAAC 60.605 50.000 0.81 0.81 37.32 2.01
646 660 2.360801 GACTTGTTTGCAGCCCTAAACA 59.639 45.455 5.61 5.61 42.96 2.83
647 661 2.965147 ACTTGTTTGCAGCCCTAAACAT 59.035 40.909 9.63 0.00 43.76 2.71
648 662 3.387699 ACTTGTTTGCAGCCCTAAACATT 59.612 39.130 9.63 0.00 43.76 2.71
649 663 3.383620 TGTTTGCAGCCCTAAACATTG 57.616 42.857 5.61 0.00 40.65 2.82
650 664 2.068519 GTTTGCAGCCCTAAACATTGC 58.931 47.619 2.67 0.00 36.91 3.56
651 665 0.243365 TTGCAGCCCTAAACATTGCG 59.757 50.000 0.00 0.00 37.58 4.85
652 666 0.893270 TGCAGCCCTAAACATTGCGT 60.893 50.000 0.00 0.00 37.58 5.24
653 667 1.091537 GCAGCCCTAAACATTGCGTA 58.908 50.000 0.00 0.00 0.00 4.42
654 668 1.676006 GCAGCCCTAAACATTGCGTAT 59.324 47.619 0.00 0.00 0.00 3.06
655 669 2.541588 GCAGCCCTAAACATTGCGTATG 60.542 50.000 0.00 0.00 40.26 2.39
657 671 2.682856 AGCCCTAAACATTGCGTATGTG 59.317 45.455 5.18 0.00 46.75 3.21
658 672 2.422127 GCCCTAAACATTGCGTATGTGT 59.578 45.455 5.18 2.88 46.75 3.72
659 673 3.623960 GCCCTAAACATTGCGTATGTGTA 59.376 43.478 5.18 3.83 46.75 2.90
661 675 4.260620 CCCTAAACATTGCGTATGTGTAGC 60.261 45.833 17.49 0.00 46.95 3.58
662 676 4.331443 CCTAAACATTGCGTATGTGTAGCA 59.669 41.667 17.49 0.00 46.95 3.49
663 677 4.963276 AAACATTGCGTATGTGTAGCAT 57.037 36.364 5.18 0.00 46.75 3.79
664 678 4.963276 AACATTGCGTATGTGTAGCATT 57.037 36.364 5.18 0.00 46.75 3.56
665 679 4.277257 ACATTGCGTATGTGTAGCATTG 57.723 40.909 3.70 9.16 45.71 2.82
666 680 2.823196 TTGCGTATGTGTAGCATTGC 57.177 45.000 0.00 0.00 40.83 3.56
667 681 2.022764 TGCGTATGTGTAGCATTGCT 57.977 45.000 16.63 16.63 43.41 3.91
668 682 1.933181 TGCGTATGTGTAGCATTGCTC 59.067 47.619 15.81 7.72 40.44 4.26
669 683 1.071239 GCGTATGTGTAGCATTGCTCG 60.071 52.381 15.81 11.57 40.44 5.03
670 684 1.522676 CGTATGTGTAGCATTGCTCGG 59.477 52.381 15.81 0.00 40.44 4.63
671 685 2.550978 GTATGTGTAGCATTGCTCGGT 58.449 47.619 15.81 1.12 40.44 4.69
672 686 1.372582 ATGTGTAGCATTGCTCGGTG 58.627 50.000 15.81 0.00 40.44 4.94
673 687 0.320050 TGTGTAGCATTGCTCGGTGA 59.680 50.000 15.81 0.00 40.44 4.02
674 688 1.270571 TGTGTAGCATTGCTCGGTGAA 60.271 47.619 15.81 0.00 40.44 3.18
675 689 1.128692 GTGTAGCATTGCTCGGTGAAC 59.871 52.381 15.81 7.23 40.44 3.18
676 690 0.370273 GTAGCATTGCTCGGTGAACG 59.630 55.000 15.81 0.00 40.44 3.95
677 691 0.037697 TAGCATTGCTCGGTGAACGT 60.038 50.000 15.81 0.00 44.69 3.99
678 692 0.884704 AGCATTGCTCGGTGAACGTT 60.885 50.000 5.03 0.00 44.69 3.99
679 693 0.040425 GCATTGCTCGGTGAACGTTT 60.040 50.000 0.46 0.00 44.69 3.60
680 694 1.195900 GCATTGCTCGGTGAACGTTTA 59.804 47.619 0.46 0.00 44.69 2.01
681 695 2.724839 GCATTGCTCGGTGAACGTTTAG 60.725 50.000 0.46 0.00 44.69 1.85
682 696 2.228138 TTGCTCGGTGAACGTTTAGT 57.772 45.000 0.46 0.00 44.69 2.24
683 697 3.367992 TTGCTCGGTGAACGTTTAGTA 57.632 42.857 0.46 0.00 44.69 1.82
684 698 3.367992 TGCTCGGTGAACGTTTAGTAA 57.632 42.857 0.46 0.00 44.69 2.24
685 699 3.715495 TGCTCGGTGAACGTTTAGTAAA 58.285 40.909 0.46 0.00 44.69 2.01
686 700 4.309099 TGCTCGGTGAACGTTTAGTAAAT 58.691 39.130 0.46 0.00 44.69 1.40
687 701 4.751098 TGCTCGGTGAACGTTTAGTAAATT 59.249 37.500 0.46 0.00 44.69 1.82
688 702 5.077424 GCTCGGTGAACGTTTAGTAAATTG 58.923 41.667 0.46 0.00 44.69 2.32
689 703 5.594724 TCGGTGAACGTTTAGTAAATTGG 57.405 39.130 0.46 0.00 44.69 3.16
690 704 5.295950 TCGGTGAACGTTTAGTAAATTGGA 58.704 37.500 0.46 0.00 44.69 3.53
691 705 5.757320 TCGGTGAACGTTTAGTAAATTGGAA 59.243 36.000 0.46 0.00 44.69 3.53
692 706 6.073657 TCGGTGAACGTTTAGTAAATTGGAAG 60.074 38.462 0.46 0.00 44.69 3.46
693 707 6.376177 GGTGAACGTTTAGTAAATTGGAAGG 58.624 40.000 0.46 0.00 0.00 3.46
694 708 6.205270 GGTGAACGTTTAGTAAATTGGAAGGA 59.795 38.462 0.46 0.00 0.00 3.36
695 709 7.295930 GTGAACGTTTAGTAAATTGGAAGGAG 58.704 38.462 0.46 0.00 0.00 3.69
696 710 6.993902 TGAACGTTTAGTAAATTGGAAGGAGT 59.006 34.615 0.46 0.00 0.00 3.85
697 711 7.172019 TGAACGTTTAGTAAATTGGAAGGAGTC 59.828 37.037 0.46 0.00 0.00 3.36
698 712 6.766429 ACGTTTAGTAAATTGGAAGGAGTCT 58.234 36.000 0.00 0.00 0.00 3.24
699 713 6.649557 ACGTTTAGTAAATTGGAAGGAGTCTG 59.350 38.462 0.00 0.00 0.00 3.51
700 714 6.649557 CGTTTAGTAAATTGGAAGGAGTCTGT 59.350 38.462 0.00 0.00 0.00 3.41
701 715 7.816031 CGTTTAGTAAATTGGAAGGAGTCTGTA 59.184 37.037 0.00 0.00 0.00 2.74
702 716 9.498176 GTTTAGTAAATTGGAAGGAGTCTGTAA 57.502 33.333 0.00 0.00 0.00 2.41
704 718 9.720769 TTAGTAAATTGGAAGGAGTCTGTAAAG 57.279 33.333 0.00 0.00 0.00 1.85
705 719 5.966742 AAATTGGAAGGAGTCTGTAAAGC 57.033 39.130 0.00 0.00 0.00 3.51
706 720 3.418684 TTGGAAGGAGTCTGTAAAGCC 57.581 47.619 0.00 0.00 0.00 4.35
707 721 1.628846 TGGAAGGAGTCTGTAAAGCCC 59.371 52.381 0.00 0.00 0.00 5.19
708 722 1.065345 GGAAGGAGTCTGTAAAGCCCC 60.065 57.143 0.00 0.00 0.00 5.80
709 723 0.613777 AAGGAGTCTGTAAAGCCCCG 59.386 55.000 0.00 0.00 0.00 5.73
710 724 0.544595 AGGAGTCTGTAAAGCCCCGT 60.545 55.000 0.00 0.00 0.00 5.28
711 725 1.188863 GGAGTCTGTAAAGCCCCGTA 58.811 55.000 0.00 0.00 0.00 4.02
712 726 1.551883 GGAGTCTGTAAAGCCCCGTAA 59.448 52.381 0.00 0.00 0.00 3.18
713 727 2.614779 GAGTCTGTAAAGCCCCGTAAC 58.385 52.381 0.00 0.00 0.00 2.50
714 728 2.233186 GAGTCTGTAAAGCCCCGTAACT 59.767 50.000 0.00 0.00 0.00 2.24
715 729 2.028385 AGTCTGTAAAGCCCCGTAACTG 60.028 50.000 0.00 0.00 0.00 3.16
716 730 1.972795 TCTGTAAAGCCCCGTAACTGT 59.027 47.619 0.00 0.00 0.00 3.55
717 731 2.369532 TCTGTAAAGCCCCGTAACTGTT 59.630 45.455 0.00 0.00 0.00 3.16
718 732 2.740447 CTGTAAAGCCCCGTAACTGTTC 59.260 50.000 0.00 0.00 0.00 3.18
719 733 1.728425 GTAAAGCCCCGTAACTGTTCG 59.272 52.381 0.00 0.96 0.00 3.95
720 734 0.107268 AAAGCCCCGTAACTGTTCGT 59.893 50.000 0.00 0.00 0.00 3.85
721 735 0.601841 AAGCCCCGTAACTGTTCGTG 60.602 55.000 0.00 0.00 0.00 4.35
722 736 2.674084 GCCCCGTAACTGTTCGTGC 61.674 63.158 0.00 3.02 0.00 5.34
723 737 1.301087 CCCCGTAACTGTTCGTGCA 60.301 57.895 0.00 0.00 0.00 4.57
724 738 0.672401 CCCCGTAACTGTTCGTGCAT 60.672 55.000 0.00 0.00 0.00 3.96
725 739 0.719465 CCCGTAACTGTTCGTGCATC 59.281 55.000 0.00 0.00 0.00 3.91
726 740 1.671850 CCCGTAACTGTTCGTGCATCT 60.672 52.381 0.00 0.00 0.00 2.90
727 741 2.416296 CCCGTAACTGTTCGTGCATCTA 60.416 50.000 0.00 0.00 0.00 1.98
728 742 2.852413 CCGTAACTGTTCGTGCATCTAG 59.148 50.000 0.00 0.00 0.00 2.43
729 743 2.279136 CGTAACTGTTCGTGCATCTAGC 59.721 50.000 0.00 0.00 45.96 3.42
763 777 1.164662 CGCAGAGGATCAAGGCCATG 61.165 60.000 5.01 2.45 37.82 3.66
799 813 4.693283 TCGTGCTGTTCAATTATCCCTAG 58.307 43.478 0.00 0.00 0.00 3.02
875 890 1.518572 CGAGCACCGTACCATCCAC 60.519 63.158 0.00 0.00 0.00 4.02
1215 1230 5.079689 TGCATGTAAGTTAATGGAGTCGA 57.920 39.130 0.00 0.00 0.00 4.20
1216 1231 5.670485 TGCATGTAAGTTAATGGAGTCGAT 58.330 37.500 0.00 0.00 0.00 3.59
1217 1232 5.753438 TGCATGTAAGTTAATGGAGTCGATC 59.247 40.000 0.00 0.00 0.00 3.69
1218 1233 5.107837 GCATGTAAGTTAATGGAGTCGATCG 60.108 44.000 9.36 9.36 0.00 3.69
1219 1234 5.571784 TGTAAGTTAATGGAGTCGATCGT 57.428 39.130 15.94 0.00 0.00 3.73
1243 1266 2.901840 CTGGTTGGCGTGTGTGCT 60.902 61.111 0.00 0.00 34.52 4.40
1249 1272 4.332637 GGCGTGTGTGCTTGGCTG 62.333 66.667 0.00 0.00 34.52 4.85
1255 1278 0.455410 TGTGTGCTTGGCTGTTTGTC 59.545 50.000 0.00 0.00 0.00 3.18
1258 1281 1.337703 TGTGCTTGGCTGTTTGTCATC 59.662 47.619 0.00 0.00 0.00 2.92
1294 1317 4.455124 GCATGTAAATTAATCTCGCCGTC 58.545 43.478 0.00 0.00 0.00 4.79
1329 1352 1.927527 AGGAGGTGCTGGGCAAGAT 60.928 57.895 0.00 0.00 41.47 2.40
1334 1357 1.378250 GTGCTGGGCAAGATGAGCT 60.378 57.895 0.00 0.00 41.47 4.09
2045 2069 3.052082 CTGTGAACTGCCGGCCTG 61.052 66.667 26.77 19.48 0.00 4.85
2059 2087 1.022451 GGCCTGCGAAATTACCACGA 61.022 55.000 0.00 0.00 0.00 4.35
2060 2088 0.800012 GCCTGCGAAATTACCACGAA 59.200 50.000 0.00 0.00 0.00 3.85
2061 2089 1.400494 GCCTGCGAAATTACCACGAAT 59.600 47.619 0.00 0.00 0.00 3.34
2062 2090 2.610374 GCCTGCGAAATTACCACGAATA 59.390 45.455 0.00 0.00 0.00 1.75
2063 2091 3.545426 GCCTGCGAAATTACCACGAATAC 60.545 47.826 0.00 0.00 0.00 1.89
2064 2092 3.619483 CCTGCGAAATTACCACGAATACA 59.381 43.478 0.00 0.00 0.00 2.29
2065 2093 4.272504 CCTGCGAAATTACCACGAATACAT 59.727 41.667 0.00 0.00 0.00 2.29
2067 2095 6.276611 TGCGAAATTACCACGAATACATAC 57.723 37.500 0.00 0.00 0.00 2.39
2079 2107 9.850628 ACCACGAATACATACATACATACATAC 57.149 33.333 0.00 0.00 0.00 2.39
2105 2138 6.668541 ACCTATGAATTGAATTCTCGTGTG 57.331 37.500 17.76 5.61 39.96 3.82
2110 2143 5.009631 TGAATTGAATTCTCGTGTGGGAAT 58.990 37.500 17.76 0.00 39.96 3.01
2111 2144 6.176896 TGAATTGAATTCTCGTGTGGGAATA 58.823 36.000 17.76 0.00 39.96 1.75
2112 2145 6.093495 TGAATTGAATTCTCGTGTGGGAATAC 59.907 38.462 17.76 0.00 39.96 1.89
2113 2146 4.545208 TGAATTCTCGTGTGGGAATACA 57.455 40.909 7.05 0.00 32.65 2.29
2114 2147 4.250464 TGAATTCTCGTGTGGGAATACAC 58.750 43.478 7.05 0.00 45.71 2.90
2115 2148 4.020573 TGAATTCTCGTGTGGGAATACACT 60.021 41.667 7.05 0.00 46.70 3.55
2116 2149 3.313012 TTCTCGTGTGGGAATACACTG 57.687 47.619 7.35 2.17 46.70 3.66
2158 2460 2.158561 AAAACCGCCAAGGATGCAGC 62.159 55.000 0.00 0.00 45.00 5.25
2163 2465 2.772691 GCCAAGGATGCAGCTGCTC 61.773 63.158 36.61 28.58 42.66 4.26
2225 2606 1.087501 GATCTTTGCTCCGGTGAACC 58.912 55.000 7.92 0.00 0.00 3.62
2239 2620 1.063070 TGAACCAACCCACCCAGCTA 61.063 55.000 0.00 0.00 0.00 3.32
2263 2656 2.202703 TTACGCAGCGATCGACCACA 62.203 55.000 24.65 0.00 0.00 4.17
2323 2717 2.412870 CACGAACACATGGCAACTCTA 58.587 47.619 0.00 0.00 37.61 2.43
2324 2718 2.413112 CACGAACACATGGCAACTCTAG 59.587 50.000 0.00 0.00 37.61 2.43
2337 3125 7.377766 TGGCAACTCTAGATGTTTTTATGAC 57.622 36.000 0.00 0.00 37.61 3.06
2374 3162 5.163982 GCGAGGATGTTTAGTTGTCAAGTAC 60.164 44.000 0.00 0.00 0.00 2.73
2381 3169 8.821147 ATGTTTAGTTGTCAAGTACGATAACA 57.179 30.769 13.80 13.80 38.91 2.41
2400 3188 4.270245 ACATTTTTGTTCGGATGCCAAT 57.730 36.364 0.00 0.00 0.00 3.16
2403 3191 5.530543 ACATTTTTGTTCGGATGCCAATTTT 59.469 32.000 0.00 0.00 0.00 1.82
2404 3192 6.039159 ACATTTTTGTTCGGATGCCAATTTTT 59.961 30.769 0.00 0.00 0.00 1.94
2405 3193 7.227512 ACATTTTTGTTCGGATGCCAATTTTTA 59.772 29.630 0.00 0.00 0.00 1.52
2406 3194 6.777526 TTTTGTTCGGATGCCAATTTTTAG 57.222 33.333 0.00 0.00 0.00 1.85
2407 3195 4.448537 TGTTCGGATGCCAATTTTTAGG 57.551 40.909 0.00 0.00 0.00 2.69
2408 3196 3.194542 TGTTCGGATGCCAATTTTTAGGG 59.805 43.478 0.00 0.00 0.00 3.53
2409 3197 2.383855 TCGGATGCCAATTTTTAGGGG 58.616 47.619 0.00 0.00 0.00 4.79
2410 3198 2.107366 CGGATGCCAATTTTTAGGGGT 58.893 47.619 0.00 0.00 0.00 4.95
2411 3199 2.159114 CGGATGCCAATTTTTAGGGGTG 60.159 50.000 0.00 0.00 0.00 4.61
2412 3200 2.837591 GGATGCCAATTTTTAGGGGTGT 59.162 45.455 0.00 0.00 0.00 4.16
2413 3201 3.263170 GGATGCCAATTTTTAGGGGTGTT 59.737 43.478 0.00 0.00 0.00 3.32
2414 3202 4.263287 GGATGCCAATTTTTAGGGGTGTTT 60.263 41.667 0.00 0.00 0.00 2.83
2415 3203 4.078639 TGCCAATTTTTAGGGGTGTTTG 57.921 40.909 0.00 0.00 0.00 2.93
2416 3204 3.181450 TGCCAATTTTTAGGGGTGTTTGG 60.181 43.478 0.00 0.00 36.16 3.28
2417 3205 3.181449 GCCAATTTTTAGGGGTGTTTGGT 60.181 43.478 0.00 0.00 35.64 3.67
2418 3206 4.687494 GCCAATTTTTAGGGGTGTTTGGTT 60.687 41.667 0.00 0.00 35.64 3.67
2419 3207 5.060506 CCAATTTTTAGGGGTGTTTGGTTC 58.939 41.667 0.00 0.00 0.00 3.62
2420 3208 4.967084 ATTTTTAGGGGTGTTTGGTTCC 57.033 40.909 0.00 0.00 0.00 3.62
2421 3209 3.399952 TTTTAGGGGTGTTTGGTTCCA 57.600 42.857 0.00 0.00 0.00 3.53
2422 3210 2.668144 TTAGGGGTGTTTGGTTCCAG 57.332 50.000 0.00 0.00 0.00 3.86
2423 3211 0.774908 TAGGGGTGTTTGGTTCCAGG 59.225 55.000 0.00 0.00 0.00 4.45
2424 3212 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
2425 3213 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
2426 3214 0.826256 GGGTGTTTGGTTCCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
2427 3215 0.826256 GGTGTTTGGTTCCAGGGACC 60.826 60.000 10.61 10.61 0.00 4.46
2428 3216 0.185175 GTGTTTGGTTCCAGGGACCT 59.815 55.000 18.89 0.00 0.00 3.85
2429 3217 0.930726 TGTTTGGTTCCAGGGACCTT 59.069 50.000 18.89 0.00 0.00 3.50
2430 3218 1.289530 TGTTTGGTTCCAGGGACCTTT 59.710 47.619 18.89 0.00 0.00 3.11
2431 3219 2.292587 TGTTTGGTTCCAGGGACCTTTT 60.293 45.455 18.89 0.00 0.00 2.27
2432 3220 2.769663 GTTTGGTTCCAGGGACCTTTTT 59.230 45.455 18.89 0.00 0.00 1.94
2433 3221 3.962063 GTTTGGTTCCAGGGACCTTTTTA 59.038 43.478 18.89 0.00 0.00 1.52
2434 3222 4.479156 TTGGTTCCAGGGACCTTTTTAT 57.521 40.909 18.89 0.00 0.00 1.40
2435 3223 3.773560 TGGTTCCAGGGACCTTTTTATG 58.226 45.455 18.89 0.00 0.00 1.90
2436 3224 3.141272 TGGTTCCAGGGACCTTTTTATGT 59.859 43.478 18.89 0.00 0.00 2.29
2437 3225 4.157246 GGTTCCAGGGACCTTTTTATGTT 58.843 43.478 10.21 0.00 0.00 2.71
2438 3226 4.021456 GGTTCCAGGGACCTTTTTATGTTG 60.021 45.833 10.21 0.00 0.00 3.33
2439 3227 3.773560 TCCAGGGACCTTTTTATGTTGG 58.226 45.455 0.00 0.00 0.00 3.77
2440 3228 2.831526 CCAGGGACCTTTTTATGTTGGG 59.168 50.000 0.00 0.00 0.00 4.12
2441 3229 3.501385 CCAGGGACCTTTTTATGTTGGGA 60.501 47.826 0.00 0.00 0.00 4.37
2442 3230 4.156477 CAGGGACCTTTTTATGTTGGGAA 58.844 43.478 0.00 0.00 0.00 3.97
2443 3231 4.777366 CAGGGACCTTTTTATGTTGGGAAT 59.223 41.667 0.00 0.00 0.00 3.01
2444 3232 5.955355 CAGGGACCTTTTTATGTTGGGAATA 59.045 40.000 0.00 0.00 0.00 1.75
2445 3233 6.096846 CAGGGACCTTTTTATGTTGGGAATAG 59.903 42.308 0.00 0.00 0.00 1.73
2446 3234 6.011096 AGGGACCTTTTTATGTTGGGAATAGA 60.011 38.462 0.00 0.00 0.00 1.98
2447 3235 6.666113 GGGACCTTTTTATGTTGGGAATAGAA 59.334 38.462 0.00 0.00 0.00 2.10
2448 3236 7.179516 GGGACCTTTTTATGTTGGGAATAGAAA 59.820 37.037 0.00 0.00 0.00 2.52
2449 3237 8.590204 GGACCTTTTTATGTTGGGAATAGAAAA 58.410 33.333 0.00 0.00 0.00 2.29
2450 3238 9.990360 GACCTTTTTATGTTGGGAATAGAAAAA 57.010 29.630 0.00 0.00 33.64 1.94
2451 3239 9.996554 ACCTTTTTATGTTGGGAATAGAAAAAG 57.003 29.630 14.00 14.00 43.87 2.27
2452 3240 9.996554 CCTTTTTATGTTGGGAATAGAAAAAGT 57.003 29.630 17.11 0.00 43.31 2.66
2454 3242 9.990360 TTTTTATGTTGGGAATAGAAAAAGTCC 57.010 29.630 0.00 0.00 31.04 3.85
2460 3248 5.112129 GGGAATAGAAAAAGTCCCTAGCA 57.888 43.478 2.21 0.00 45.50 3.49
2461 3249 5.506708 GGGAATAGAAAAAGTCCCTAGCAA 58.493 41.667 2.21 0.00 45.50 3.91
2462 3250 5.949952 GGGAATAGAAAAAGTCCCTAGCAAA 59.050 40.000 2.21 0.00 45.50 3.68
2463 3251 6.607600 GGGAATAGAAAAAGTCCCTAGCAAAT 59.392 38.462 2.21 0.00 45.50 2.32
2464 3252 7.201830 GGGAATAGAAAAAGTCCCTAGCAAATC 60.202 40.741 2.21 0.00 45.50 2.17
2465 3253 7.339466 GGAATAGAAAAAGTCCCTAGCAAATCA 59.661 37.037 0.00 0.00 0.00 2.57
2466 3254 8.650143 AATAGAAAAAGTCCCTAGCAAATCAA 57.350 30.769 0.00 0.00 0.00 2.57
2467 3255 6.976934 AGAAAAAGTCCCTAGCAAATCAAA 57.023 33.333 0.00 0.00 0.00 2.69
2468 3256 7.544804 AGAAAAAGTCCCTAGCAAATCAAAT 57.455 32.000 0.00 0.00 0.00 2.32
2469 3257 8.650143 AGAAAAAGTCCCTAGCAAATCAAATA 57.350 30.769 0.00 0.00 0.00 1.40
2470 3258 8.743714 AGAAAAAGTCCCTAGCAAATCAAATAG 58.256 33.333 0.00 0.00 0.00 1.73
2471 3259 7.410120 AAAAGTCCCTAGCAAATCAAATAGG 57.590 36.000 0.00 0.00 35.54 2.57
2475 3263 4.792068 CCCTAGCAAATCAAATAGGGTGA 58.208 43.478 7.81 0.00 46.43 4.02
2476 3264 4.823989 CCCTAGCAAATCAAATAGGGTGAG 59.176 45.833 7.81 0.00 46.43 3.51
2477 3265 5.397899 CCCTAGCAAATCAAATAGGGTGAGA 60.398 44.000 7.81 0.00 46.43 3.27
2478 3266 5.529060 CCTAGCAAATCAAATAGGGTGAGAC 59.471 44.000 0.00 0.00 32.70 3.36
2479 3267 5.184892 AGCAAATCAAATAGGGTGAGACT 57.815 39.130 0.00 0.00 0.00 3.24
2480 3268 5.574188 AGCAAATCAAATAGGGTGAGACTT 58.426 37.500 0.00 0.00 0.00 3.01
2481 3269 6.012745 AGCAAATCAAATAGGGTGAGACTTT 58.987 36.000 0.00 0.00 0.00 2.66
2482 3270 6.494835 AGCAAATCAAATAGGGTGAGACTTTT 59.505 34.615 0.00 0.00 0.00 2.27
2483 3271 7.015584 AGCAAATCAAATAGGGTGAGACTTTTT 59.984 33.333 0.00 0.00 0.00 1.94
2484 3272 7.116805 GCAAATCAAATAGGGTGAGACTTTTTG 59.883 37.037 0.00 0.00 37.86 2.44
2485 3273 5.705609 TCAAATAGGGTGAGACTTTTTGC 57.294 39.130 0.00 0.00 37.05 3.68
2486 3274 5.385198 TCAAATAGGGTGAGACTTTTTGCT 58.615 37.500 0.00 0.00 37.05 3.91
2487 3275 6.539173 TCAAATAGGGTGAGACTTTTTGCTA 58.461 36.000 0.00 0.00 37.05 3.49
2488 3276 7.001674 TCAAATAGGGTGAGACTTTTTGCTAA 58.998 34.615 0.00 0.00 37.05 3.09
2489 3277 7.504238 TCAAATAGGGTGAGACTTTTTGCTAAA 59.496 33.333 0.00 0.00 37.05 1.85
2490 3278 7.833285 AATAGGGTGAGACTTTTTGCTAAAA 57.167 32.000 5.93 5.93 0.00 1.52
2504 3292 9.170584 CTTTTTGCTAAAAGTACTTAGAAGCAC 57.829 33.333 26.54 9.63 43.34 4.40
2505 3293 6.796705 TTGCTAAAAGTACTTAGAAGCACC 57.203 37.500 26.54 8.77 31.59 5.01
2506 3294 6.110411 TGCTAAAAGTACTTAGAAGCACCT 57.890 37.500 24.48 1.17 31.59 4.00
2507 3295 6.164176 TGCTAAAAGTACTTAGAAGCACCTC 58.836 40.000 24.48 7.11 31.59 3.85
2508 3296 5.581479 GCTAAAAGTACTTAGAAGCACCTCC 59.419 44.000 22.32 2.48 31.59 4.30
2509 3297 5.827326 AAAAGTACTTAGAAGCACCTCCT 57.173 39.130 8.92 0.00 0.00 3.69
2510 3298 5.827326 AAAGTACTTAGAAGCACCTCCTT 57.173 39.130 8.92 0.00 0.00 3.36
2511 3299 4.810191 AGTACTTAGAAGCACCTCCTTG 57.190 45.455 0.00 0.00 0.00 3.61
2512 3300 4.417437 AGTACTTAGAAGCACCTCCTTGA 58.583 43.478 0.00 0.00 0.00 3.02
2513 3301 3.971245 ACTTAGAAGCACCTCCTTGAG 57.029 47.619 0.00 0.00 0.00 3.02
2514 3302 3.511477 ACTTAGAAGCACCTCCTTGAGA 58.489 45.455 0.00 0.00 0.00 3.27
2515 3303 3.513515 ACTTAGAAGCACCTCCTTGAGAG 59.486 47.826 0.00 0.00 42.83 3.20
2516 3304 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
2517 3305 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
2518 3306 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
2519 3307 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
2520 3308 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
2521 3309 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
2522 3310 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
2550 3338 4.976224 GTCTCAGGGACTAGAAAGAGTC 57.024 50.000 0.00 0.00 44.39 3.36
2571 3359 6.723131 GTCCTATGACTAAGAACCAAACAC 57.277 41.667 0.00 0.00 38.53 3.32
2572 3360 5.642491 GTCCTATGACTAAGAACCAAACACC 59.358 44.000 0.00 0.00 38.53 4.16
2573 3361 5.308497 TCCTATGACTAAGAACCAAACACCA 59.692 40.000 0.00 0.00 0.00 4.17
2574 3362 5.411669 CCTATGACTAAGAACCAAACACCAC 59.588 44.000 0.00 0.00 0.00 4.16
2575 3363 3.547746 TGACTAAGAACCAAACACCACC 58.452 45.455 0.00 0.00 0.00 4.61
2666 3454 2.323105 GTGCAACACGTGTGACCG 59.677 61.111 24.16 12.30 36.32 4.79
2765 3553 2.060050 ATCAGAGGAGTGGTCGGTAG 57.940 55.000 0.00 0.00 0.00 3.18
2794 3582 4.287326 TGGAGCATCTCTAGCTAGCTAGTA 59.713 45.833 38.27 30.24 43.58 1.82
2832 3620 9.668497 GTCTAATTTTAGTAGGGAGATTTGTGT 57.332 33.333 0.00 0.00 32.61 3.72
2873 3661 1.168714 GCTTAACAGGTCTGCCCTTG 58.831 55.000 0.00 0.00 42.73 3.61
2874 3662 1.168714 CTTAACAGGTCTGCCCTTGC 58.831 55.000 0.00 0.00 42.73 4.01
2875 3663 0.605319 TTAACAGGTCTGCCCTTGCG 60.605 55.000 0.00 0.00 42.73 4.85
2876 3664 1.764571 TAACAGGTCTGCCCTTGCGT 61.765 55.000 0.00 0.00 42.73 5.24
2877 3665 2.281761 CAGGTCTGCCCTTGCGTT 60.282 61.111 0.00 0.00 42.73 4.84
2950 3738 3.310860 GAGGACGACGGGGCAACAT 62.311 63.158 0.00 0.00 39.74 2.71
2971 3759 0.235665 CAGCGTGTGATGGTGTTGTC 59.764 55.000 0.00 0.00 0.00 3.18
2972 3760 0.106708 AGCGTGTGATGGTGTTGTCT 59.893 50.000 0.00 0.00 0.00 3.41
2973 3761 0.512952 GCGTGTGATGGTGTTGTCTC 59.487 55.000 0.00 0.00 0.00 3.36
2974 3762 1.864565 CGTGTGATGGTGTTGTCTCA 58.135 50.000 0.00 0.00 0.00 3.27
2975 3763 2.416747 CGTGTGATGGTGTTGTCTCAT 58.583 47.619 0.00 0.00 0.00 2.90
2976 3764 2.413112 CGTGTGATGGTGTTGTCTCATC 59.587 50.000 0.00 0.00 38.13 2.92
2977 3765 3.402110 GTGTGATGGTGTTGTCTCATCA 58.598 45.455 0.00 0.00 43.16 3.07
2980 3768 3.667360 TGATGGTGTTGTCTCATCACTG 58.333 45.455 0.00 0.00 41.31 3.66
2981 3769 3.324556 TGATGGTGTTGTCTCATCACTGA 59.675 43.478 0.00 0.00 41.31 3.41
2982 3770 4.019950 TGATGGTGTTGTCTCATCACTGAT 60.020 41.667 0.00 0.00 41.31 2.90
2983 3771 3.667360 TGGTGTTGTCTCATCACTGATG 58.333 45.455 12.25 12.25 41.00 3.07
2984 3772 2.417933 GGTGTTGTCTCATCACTGATGC 59.582 50.000 13.46 1.86 39.63 3.91
2985 3773 3.332919 GTGTTGTCTCATCACTGATGCT 58.667 45.455 13.46 0.00 39.63 3.79
2986 3774 4.498241 GTGTTGTCTCATCACTGATGCTA 58.502 43.478 13.46 2.25 39.63 3.49
2987 3775 4.328440 GTGTTGTCTCATCACTGATGCTAC 59.672 45.833 13.46 13.19 39.63 3.58
2988 3776 4.221482 TGTTGTCTCATCACTGATGCTACT 59.779 41.667 13.46 0.00 39.63 2.57
2989 3777 4.645762 TGTCTCATCACTGATGCTACTC 57.354 45.455 13.46 4.16 39.63 2.59
2990 3778 3.065925 TGTCTCATCACTGATGCTACTCG 59.934 47.826 13.46 0.00 39.63 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 19 1.590147 AGCTTCCATGCTTGCTTGC 59.410 52.632 3.37 0.00 40.93 4.01
47 49 7.391620 ACCATACGAAGGTAGAAATTTTCTCA 58.608 34.615 14.75 0.47 41.14 3.27
48 50 7.845066 ACCATACGAAGGTAGAAATTTTCTC 57.155 36.000 14.75 7.33 41.14 2.87
51 53 8.943002 CACTTACCATACGAAGGTAGAAATTTT 58.057 33.333 0.00 0.00 42.22 1.82
58 60 4.497006 CGACCACTTACCATACGAAGGTAG 60.497 50.000 0.00 0.00 42.22 3.18
59 61 3.378112 CGACCACTTACCATACGAAGGTA 59.622 47.826 0.00 0.00 40.54 3.08
65 67 0.529119 GGCCGACCACTTACCATACG 60.529 60.000 0.00 0.00 35.26 3.06
89 91 6.016610 TGCTGGGAAACAACAGAATAGTTAAC 60.017 38.462 0.00 0.00 36.86 2.01
94 96 6.732154 CATATGCTGGGAAACAACAGAATAG 58.268 40.000 0.00 0.00 38.33 1.73
132 146 5.832595 TGGTCTTCATGGATGAAAGAAAACA 59.167 36.000 3.74 0.00 45.26 2.83
133 147 6.152379 GTGGTCTTCATGGATGAAAGAAAAC 58.848 40.000 3.74 0.00 45.26 2.43
161 175 4.320788 GCTCATCTTTTCTTGGACCAACAG 60.321 45.833 1.69 0.00 0.00 3.16
174 188 2.183679 AGTCGGGAGAGCTCATCTTTT 58.816 47.619 17.77 0.00 38.84 2.27
175 189 1.859302 AGTCGGGAGAGCTCATCTTT 58.141 50.000 17.77 0.00 38.84 2.52
219 233 2.783135 GAAGCAGATGGTGGTCTTCAA 58.217 47.619 0.00 0.00 35.15 2.69
232 246 9.817809 AGTATATAATTGAGAAAACGAAGCAGA 57.182 29.630 0.00 0.00 0.00 4.26
246 260 3.575256 ACCACCGCGGAGTATATAATTGA 59.425 43.478 35.90 0.00 38.63 2.57
249 263 2.232941 CCACCACCGCGGAGTATATAAT 59.767 50.000 35.90 1.64 38.63 1.28
273 287 5.473162 TCGCAAAATATACTCCCATCATTGG 59.527 40.000 0.00 0.00 43.23 3.16
274 288 6.558771 TCGCAAAATATACTCCCATCATTG 57.441 37.500 0.00 0.00 0.00 2.82
275 289 7.448161 TGATTCGCAAAATATACTCCCATCATT 59.552 33.333 0.00 0.00 0.00 2.57
276 290 6.942005 TGATTCGCAAAATATACTCCCATCAT 59.058 34.615 0.00 0.00 0.00 2.45
277 291 6.295249 TGATTCGCAAAATATACTCCCATCA 58.705 36.000 0.00 0.00 0.00 3.07
278 292 6.801539 TGATTCGCAAAATATACTCCCATC 57.198 37.500 0.00 0.00 0.00 3.51
279 293 7.765695 AATGATTCGCAAAATATACTCCCAT 57.234 32.000 0.00 0.00 0.00 4.00
280 294 8.862325 ATAATGATTCGCAAAATATACTCCCA 57.138 30.769 0.00 0.00 0.00 4.37
281 295 9.167311 AGATAATGATTCGCAAAATATACTCCC 57.833 33.333 0.00 0.00 0.00 4.30
289 303 8.773645 TCGACATAAGATAATGATTCGCAAAAT 58.226 29.630 0.00 0.00 29.98 1.82
311 325 6.499172 TCATGACTGAATGTCTAGAATCGAC 58.501 40.000 0.00 0.00 45.54 4.20
317 331 7.894753 ATTCTCTCATGACTGAATGTCTAGA 57.105 36.000 14.22 0.00 45.54 2.43
411 425 5.584649 GCTAGATAAAGCACAACACCACATA 59.415 40.000 0.00 0.00 42.30 2.29
412 426 4.396166 GCTAGATAAAGCACAACACCACAT 59.604 41.667 0.00 0.00 42.30 3.21
413 427 3.751175 GCTAGATAAAGCACAACACCACA 59.249 43.478 0.00 0.00 42.30 4.17
414 428 4.003648 AGCTAGATAAAGCACAACACCAC 58.996 43.478 0.00 0.00 45.30 4.16
416 430 3.375299 CCAGCTAGATAAAGCACAACACC 59.625 47.826 0.00 0.00 45.30 4.16
459 473 8.964476 TTCGAGCTAAATGAGAGGATAAAAAT 57.036 30.769 0.00 0.00 0.00 1.82
464 478 6.716934 AGTTTCGAGCTAAATGAGAGGATA 57.283 37.500 0.00 0.00 0.00 2.59
468 482 5.881637 GCTAGTTTCGAGCTAAATGAGAG 57.118 43.478 0.00 0.00 36.96 3.20
499 513 6.017440 TGCTTAGCTTGTAACAATTTCGAGTT 60.017 34.615 5.60 0.00 0.00 3.01
504 518 7.308435 ACTCATGCTTAGCTTGTAACAATTTC 58.692 34.615 17.57 0.00 35.60 2.17
506 520 6.430925 TGACTCATGCTTAGCTTGTAACAATT 59.569 34.615 17.57 0.00 35.60 2.32
509 523 4.893608 TGACTCATGCTTAGCTTGTAACA 58.106 39.130 17.57 13.06 35.60 2.41
510 524 5.352569 ACATGACTCATGCTTAGCTTGTAAC 59.647 40.000 17.50 11.16 44.80 2.50
523 537 3.795639 CGAGCTGTAGAACATGACTCATG 59.204 47.826 16.22 16.22 46.18 3.07
575 589 8.716646 TCAGCTCAACTCATATTAAAATTCGA 57.283 30.769 0.00 0.00 0.00 3.71
598 612 2.327343 GCGAGTTGCACATGGCTCA 61.327 57.895 0.00 0.00 45.45 4.26
622 636 0.886490 AGGGCTGCAAACAAGTCGAG 60.886 55.000 0.50 0.00 0.00 4.04
625 639 2.360801 TGTTTAGGGCTGCAAACAAGTC 59.639 45.455 12.57 0.00 40.64 3.01
629 643 2.547642 GCAATGTTTAGGGCTGCAAACA 60.548 45.455 15.99 15.99 45.72 2.83
643 657 7.109232 AGCAATGCTACACATACGCAATGTT 62.109 40.000 5.69 0.00 40.93 2.71
644 658 5.690990 AGCAATGCTACACATACGCAATGT 61.691 41.667 5.69 0.00 43.14 2.71
645 659 3.038017 GCAATGCTACACATACGCAATG 58.962 45.455 0.00 0.00 38.34 2.82
646 660 2.945008 AGCAATGCTACACATACGCAAT 59.055 40.909 5.69 0.00 38.34 3.56
647 661 2.351418 GAGCAATGCTACACATACGCAA 59.649 45.455 8.12 0.00 39.88 4.85
648 662 1.933181 GAGCAATGCTACACATACGCA 59.067 47.619 8.12 0.00 39.88 5.24
649 663 1.071239 CGAGCAATGCTACACATACGC 60.071 52.381 8.12 0.00 39.88 4.42
650 664 1.522676 CCGAGCAATGCTACACATACG 59.477 52.381 8.12 5.43 39.88 3.06
651 665 2.285220 CACCGAGCAATGCTACACATAC 59.715 50.000 8.12 0.00 39.88 2.39
652 666 2.167487 TCACCGAGCAATGCTACACATA 59.833 45.455 8.12 0.00 39.88 2.29
653 667 1.066215 TCACCGAGCAATGCTACACAT 60.066 47.619 8.12 0.00 39.88 3.21
654 668 0.320050 TCACCGAGCAATGCTACACA 59.680 50.000 8.12 0.00 39.88 3.72
655 669 1.128692 GTTCACCGAGCAATGCTACAC 59.871 52.381 8.12 0.00 39.88 2.90
656 670 1.438651 GTTCACCGAGCAATGCTACA 58.561 50.000 8.12 0.00 39.88 2.74
657 671 0.370273 CGTTCACCGAGCAATGCTAC 59.630 55.000 8.12 0.00 39.88 3.58
658 672 0.037697 ACGTTCACCGAGCAATGCTA 60.038 50.000 8.12 0.00 39.88 3.49
659 673 0.884704 AACGTTCACCGAGCAATGCT 60.885 50.000 7.79 7.79 43.88 3.79
660 674 0.040425 AAACGTTCACCGAGCAATGC 60.040 50.000 0.00 0.00 40.70 3.56
661 675 2.478894 ACTAAACGTTCACCGAGCAATG 59.521 45.455 0.00 0.00 40.70 2.82
662 676 2.762745 ACTAAACGTTCACCGAGCAAT 58.237 42.857 0.00 0.00 40.70 3.56
663 677 2.228138 ACTAAACGTTCACCGAGCAA 57.772 45.000 0.00 0.00 40.70 3.91
664 678 3.367992 TTACTAAACGTTCACCGAGCA 57.632 42.857 0.00 0.00 40.70 4.26
665 679 4.916099 ATTTACTAAACGTTCACCGAGC 57.084 40.909 0.00 0.00 40.70 5.03
666 680 5.406175 TCCAATTTACTAAACGTTCACCGAG 59.594 40.000 0.00 0.00 40.70 4.63
667 681 5.295950 TCCAATTTACTAAACGTTCACCGA 58.704 37.500 0.00 0.00 40.70 4.69
668 682 5.594724 TCCAATTTACTAAACGTTCACCG 57.405 39.130 0.00 0.00 44.03 4.94
669 683 6.205270 TCCTTCCAATTTACTAAACGTTCACC 59.795 38.462 0.00 0.00 0.00 4.02
670 684 7.041576 ACTCCTTCCAATTTACTAAACGTTCAC 60.042 37.037 0.00 0.00 0.00 3.18
671 685 6.993902 ACTCCTTCCAATTTACTAAACGTTCA 59.006 34.615 0.00 0.00 0.00 3.18
672 686 7.387122 AGACTCCTTCCAATTTACTAAACGTTC 59.613 37.037 0.00 0.00 0.00 3.95
673 687 7.172703 CAGACTCCTTCCAATTTACTAAACGTT 59.827 37.037 0.00 0.00 0.00 3.99
674 688 6.649557 CAGACTCCTTCCAATTTACTAAACGT 59.350 38.462 0.00 0.00 0.00 3.99
675 689 6.649557 ACAGACTCCTTCCAATTTACTAAACG 59.350 38.462 0.00 0.00 0.00 3.60
676 690 7.981102 ACAGACTCCTTCCAATTTACTAAAC 57.019 36.000 0.00 0.00 0.00 2.01
678 692 9.720769 CTTTACAGACTCCTTCCAATTTACTAA 57.279 33.333 0.00 0.00 0.00 2.24
679 693 7.822822 GCTTTACAGACTCCTTCCAATTTACTA 59.177 37.037 0.00 0.00 0.00 1.82
680 694 6.655425 GCTTTACAGACTCCTTCCAATTTACT 59.345 38.462 0.00 0.00 0.00 2.24
681 695 6.127980 GGCTTTACAGACTCCTTCCAATTTAC 60.128 42.308 0.00 0.00 0.00 2.01
682 696 5.944007 GGCTTTACAGACTCCTTCCAATTTA 59.056 40.000 0.00 0.00 0.00 1.40
683 697 4.767409 GGCTTTACAGACTCCTTCCAATTT 59.233 41.667 0.00 0.00 0.00 1.82
684 698 4.336280 GGCTTTACAGACTCCTTCCAATT 58.664 43.478 0.00 0.00 0.00 2.32
685 699 3.308473 GGGCTTTACAGACTCCTTCCAAT 60.308 47.826 0.00 0.00 0.00 3.16
686 700 2.039879 GGGCTTTACAGACTCCTTCCAA 59.960 50.000 0.00 0.00 0.00 3.53
687 701 1.628846 GGGCTTTACAGACTCCTTCCA 59.371 52.381 0.00 0.00 0.00 3.53
688 702 1.065345 GGGGCTTTACAGACTCCTTCC 60.065 57.143 0.00 0.00 0.00 3.46
689 703 1.405661 CGGGGCTTTACAGACTCCTTC 60.406 57.143 0.00 0.00 0.00 3.46
690 704 0.613777 CGGGGCTTTACAGACTCCTT 59.386 55.000 0.00 0.00 0.00 3.36
691 705 0.544595 ACGGGGCTTTACAGACTCCT 60.545 55.000 0.00 0.00 0.00 3.69
692 706 1.188863 TACGGGGCTTTACAGACTCC 58.811 55.000 0.00 0.00 0.00 3.85
693 707 2.233186 AGTTACGGGGCTTTACAGACTC 59.767 50.000 0.00 0.00 0.00 3.36
694 708 2.028385 CAGTTACGGGGCTTTACAGACT 60.028 50.000 0.00 0.00 0.00 3.24
695 709 2.289257 ACAGTTACGGGGCTTTACAGAC 60.289 50.000 0.00 0.00 0.00 3.51
696 710 1.972795 ACAGTTACGGGGCTTTACAGA 59.027 47.619 0.00 0.00 0.00 3.41
697 711 2.467566 ACAGTTACGGGGCTTTACAG 57.532 50.000 0.00 0.00 0.00 2.74
698 712 2.769893 GAACAGTTACGGGGCTTTACA 58.230 47.619 0.00 0.00 0.00 2.41
699 713 1.728425 CGAACAGTTACGGGGCTTTAC 59.272 52.381 0.00 0.00 0.00 2.01
700 714 1.344114 ACGAACAGTTACGGGGCTTTA 59.656 47.619 0.00 0.00 0.00 1.85
701 715 0.107268 ACGAACAGTTACGGGGCTTT 59.893 50.000 0.00 0.00 0.00 3.51
702 716 0.601841 CACGAACAGTTACGGGGCTT 60.602 55.000 0.00 0.00 0.00 4.35
703 717 1.005394 CACGAACAGTTACGGGGCT 60.005 57.895 0.00 0.00 0.00 5.19
704 718 2.674084 GCACGAACAGTTACGGGGC 61.674 63.158 8.76 8.15 33.29 5.80
705 719 0.672401 ATGCACGAACAGTTACGGGG 60.672 55.000 8.76 3.51 33.29 5.73
706 720 0.719465 GATGCACGAACAGTTACGGG 59.281 55.000 0.00 6.57 35.93 5.28
707 721 1.710013 AGATGCACGAACAGTTACGG 58.290 50.000 0.00 0.00 0.00 4.02
708 722 2.279136 GCTAGATGCACGAACAGTTACG 59.721 50.000 0.00 0.00 42.31 3.18
709 723 3.909019 GCTAGATGCACGAACAGTTAC 57.091 47.619 0.00 0.00 42.31 2.50
763 777 1.941476 GCACGATCACACGTCGGTTC 61.941 60.000 0.00 0.00 44.76 3.62
854 869 4.508128 ATGGTACGGTGCTCGCGG 62.508 66.667 6.13 0.00 43.89 6.46
855 870 2.954868 GATGGTACGGTGCTCGCG 60.955 66.667 0.00 0.00 43.89 5.87
932 947 4.662961 TCCGTGTGGTCAGCTGCG 62.663 66.667 9.47 5.45 36.30 5.18
1115 1130 4.760840 TCTCGTCGTCGCTGCAGC 62.761 66.667 29.12 29.12 36.96 5.25
1188 1203 6.866480 ACTCCATTAACTTACATGCAAATGG 58.134 36.000 13.90 13.90 42.99 3.16
1215 1230 0.949105 GCCAACCAGTTCACGACGAT 60.949 55.000 0.00 0.00 0.00 3.73
1216 1231 1.593209 GCCAACCAGTTCACGACGA 60.593 57.895 0.00 0.00 0.00 4.20
1217 1232 2.935955 GCCAACCAGTTCACGACG 59.064 61.111 0.00 0.00 0.00 5.12
1218 1233 1.885850 ACGCCAACCAGTTCACGAC 60.886 57.895 8.28 0.00 0.00 4.34
1219 1234 1.885388 CACGCCAACCAGTTCACGA 60.885 57.895 8.28 0.00 0.00 4.35
1243 1266 1.199789 GATGCGATGACAAACAGCCAA 59.800 47.619 0.00 0.00 0.00 4.52
1249 1272 1.003545 CCCGATGATGCGATGACAAAC 60.004 52.381 0.00 0.00 0.00 2.93
1411 1434 3.385384 CAGGAGGAGCAGACGCCA 61.385 66.667 0.00 0.00 38.42 5.69
2045 2069 6.276611 TGTATGTATTCGTGGTAATTTCGC 57.723 37.500 0.00 0.00 0.00 4.70
2079 2107 8.278408 CACACGAGAATTCAATTCATAGGTATG 58.722 37.037 12.74 0.83 41.71 2.39
2105 2138 2.558359 AGCAAGCAAACAGTGTATTCCC 59.442 45.455 0.00 0.00 0.00 3.97
2110 2143 1.142870 AGGGAGCAAGCAAACAGTGTA 59.857 47.619 0.00 0.00 0.00 2.90
2111 2144 0.106519 AGGGAGCAAGCAAACAGTGT 60.107 50.000 0.00 0.00 0.00 3.55
2112 2145 0.595095 GAGGGAGCAAGCAAACAGTG 59.405 55.000 0.00 0.00 0.00 3.66
2113 2146 0.886490 CGAGGGAGCAAGCAAACAGT 60.886 55.000 0.00 0.00 0.00 3.55
2114 2147 1.580845 CCGAGGGAGCAAGCAAACAG 61.581 60.000 0.00 0.00 0.00 3.16
2115 2148 1.600636 CCGAGGGAGCAAGCAAACA 60.601 57.895 0.00 0.00 0.00 2.83
2116 2149 1.600916 ACCGAGGGAGCAAGCAAAC 60.601 57.895 0.00 0.00 0.00 2.93
2158 2460 1.936547 GCTCGGTAAATGAAGGAGCAG 59.063 52.381 6.47 0.00 47.00 4.24
2163 2465 1.327764 GAAGCGCTCGGTAAATGAAGG 59.672 52.381 12.06 0.00 0.00 3.46
2225 2606 1.207791 AGAGATAGCTGGGTGGGTTG 58.792 55.000 0.00 0.00 0.00 3.77
2239 2620 0.945099 TCGATCGCTGCGTAAGAGAT 59.055 50.000 22.48 6.65 46.85 2.75
2263 2656 1.043816 ATCGATTGATCACCTCGGCT 58.956 50.000 20.74 10.31 33.38 5.52
2337 3125 3.370978 ACATCCTCGCGTCACTAAATTTG 59.629 43.478 5.77 0.00 0.00 2.32
2374 3162 4.499040 GGCATCCGAACAAAAATGTTATCG 59.501 41.667 0.00 0.00 31.35 2.92
2381 3169 6.631971 AAAAATTGGCATCCGAACAAAAAT 57.368 29.167 0.00 0.00 0.00 1.82
2400 3188 3.707102 CTGGAACCAAACACCCCTAAAAA 59.293 43.478 0.00 0.00 0.00 1.94
2403 3191 1.146152 CCTGGAACCAAACACCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
2404 3192 0.774908 CCTGGAACCAAACACCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
2405 3193 1.541672 CCTGGAACCAAACACCCCT 59.458 57.895 0.00 0.00 0.00 4.79
2406 3194 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
2407 3195 0.826256 GTCCCTGGAACCAAACACCC 60.826 60.000 0.00 0.00 0.00 4.61
2408 3196 0.826256 GGTCCCTGGAACCAAACACC 60.826 60.000 0.00 0.00 0.00 4.16
2409 3197 0.185175 AGGTCCCTGGAACCAAACAC 59.815 55.000 4.43 0.00 30.85 3.32
2410 3198 0.930726 AAGGTCCCTGGAACCAAACA 59.069 50.000 4.43 0.00 30.85 2.83
2411 3199 2.082140 AAAGGTCCCTGGAACCAAAC 57.918 50.000 4.43 0.00 30.85 2.93
2412 3200 2.858787 AAAAGGTCCCTGGAACCAAA 57.141 45.000 4.43 0.00 30.85 3.28
2413 3201 2.858787 AAAAAGGTCCCTGGAACCAA 57.141 45.000 4.43 0.00 30.85 3.67
2414 3202 3.141272 ACATAAAAAGGTCCCTGGAACCA 59.859 43.478 4.43 0.00 30.85 3.67
2415 3203 3.774734 ACATAAAAAGGTCCCTGGAACC 58.225 45.455 0.00 0.00 30.85 3.62
2416 3204 4.021456 CCAACATAAAAAGGTCCCTGGAAC 60.021 45.833 0.00 0.00 0.00 3.62
2417 3205 4.156477 CCAACATAAAAAGGTCCCTGGAA 58.844 43.478 0.00 0.00 0.00 3.53
2418 3206 3.501385 CCCAACATAAAAAGGTCCCTGGA 60.501 47.826 0.00 0.00 0.00 3.86
2419 3207 2.831526 CCCAACATAAAAAGGTCCCTGG 59.168 50.000 0.00 0.00 0.00 4.45
2420 3208 3.773560 TCCCAACATAAAAAGGTCCCTG 58.226 45.455 0.00 0.00 0.00 4.45
2421 3209 4.479156 TTCCCAACATAAAAAGGTCCCT 57.521 40.909 0.00 0.00 0.00 4.20
2422 3210 6.192044 TCTATTCCCAACATAAAAAGGTCCC 58.808 40.000 0.00 0.00 0.00 4.46
2423 3211 7.712204 TTCTATTCCCAACATAAAAAGGTCC 57.288 36.000 0.00 0.00 0.00 4.46
2424 3212 9.990360 TTTTTCTATTCCCAACATAAAAAGGTC 57.010 29.630 0.00 0.00 0.00 3.85
2425 3213 9.996554 CTTTTTCTATTCCCAACATAAAAAGGT 57.003 29.630 0.00 0.00 38.14 3.50
2426 3214 9.996554 ACTTTTTCTATTCCCAACATAAAAAGG 57.003 29.630 16.96 3.45 42.47 3.11
2428 3216 9.990360 GGACTTTTTCTATTCCCAACATAAAAA 57.010 29.630 0.00 0.00 0.00 1.94
2429 3217 8.590204 GGGACTTTTTCTATTCCCAACATAAAA 58.410 33.333 0.37 0.00 46.35 1.52
2430 3218 8.129496 GGGACTTTTTCTATTCCCAACATAAA 57.871 34.615 0.37 0.00 46.35 1.40
2431 3219 7.712204 GGGACTTTTTCTATTCCCAACATAA 57.288 36.000 0.37 0.00 46.35 1.90
2439 3227 7.339466 TGATTTGCTAGGGACTTTTTCTATTCC 59.661 37.037 0.00 0.00 41.75 3.01
2440 3228 8.281212 TGATTTGCTAGGGACTTTTTCTATTC 57.719 34.615 0.00 0.00 41.75 1.75
2441 3229 8.650143 TTGATTTGCTAGGGACTTTTTCTATT 57.350 30.769 0.00 0.00 41.75 1.73
2442 3230 8.650143 TTTGATTTGCTAGGGACTTTTTCTAT 57.350 30.769 0.00 0.00 41.75 1.98
2443 3231 8.650143 ATTTGATTTGCTAGGGACTTTTTCTA 57.350 30.769 0.00 0.00 41.75 2.10
2444 3232 6.976934 TTTGATTTGCTAGGGACTTTTTCT 57.023 33.333 0.00 0.00 41.75 2.52
2445 3233 7.976175 CCTATTTGATTTGCTAGGGACTTTTTC 59.024 37.037 0.00 0.00 41.75 2.29
2446 3234 7.840931 CCTATTTGATTTGCTAGGGACTTTTT 58.159 34.615 0.00 0.00 41.75 1.94
2447 3235 7.410120 CCTATTTGATTTGCTAGGGACTTTT 57.590 36.000 0.00 0.00 41.75 2.27
2454 3242 5.529060 GTCTCACCCTATTTGATTTGCTAGG 59.471 44.000 0.00 0.00 0.00 3.02
2455 3243 6.352516 AGTCTCACCCTATTTGATTTGCTAG 58.647 40.000 0.00 0.00 0.00 3.42
2456 3244 6.313519 AGTCTCACCCTATTTGATTTGCTA 57.686 37.500 0.00 0.00 0.00 3.49
2457 3245 5.184892 AGTCTCACCCTATTTGATTTGCT 57.815 39.130 0.00 0.00 0.00 3.91
2458 3246 5.904362 AAGTCTCACCCTATTTGATTTGC 57.096 39.130 0.00 0.00 0.00 3.68
2459 3247 7.116805 GCAAAAAGTCTCACCCTATTTGATTTG 59.883 37.037 0.00 0.00 0.00 2.32
2460 3248 7.015584 AGCAAAAAGTCTCACCCTATTTGATTT 59.984 33.333 0.00 0.00 0.00 2.17
2461 3249 6.494835 AGCAAAAAGTCTCACCCTATTTGATT 59.505 34.615 0.00 0.00 0.00 2.57
2462 3250 6.012745 AGCAAAAAGTCTCACCCTATTTGAT 58.987 36.000 0.00 0.00 0.00 2.57
2463 3251 5.385198 AGCAAAAAGTCTCACCCTATTTGA 58.615 37.500 0.00 0.00 0.00 2.69
2464 3252 5.712152 AGCAAAAAGTCTCACCCTATTTG 57.288 39.130 0.00 0.00 0.00 2.32
2465 3253 7.833285 TTTAGCAAAAAGTCTCACCCTATTT 57.167 32.000 0.00 0.00 0.00 1.40
2466 3254 7.833285 TTTTAGCAAAAAGTCTCACCCTATT 57.167 32.000 0.00 0.00 31.04 1.73
2467 3255 7.454260 CTTTTAGCAAAAAGTCTCACCCTAT 57.546 36.000 3.06 0.00 44.36 2.57
2468 3256 6.877611 CTTTTAGCAAAAAGTCTCACCCTA 57.122 37.500 3.06 0.00 44.36 3.53
2469 3257 5.774498 CTTTTAGCAAAAAGTCTCACCCT 57.226 39.130 3.06 0.00 44.36 4.34
2479 3267 8.132995 GGTGCTTCTAAGTACTTTTAGCAAAAA 58.867 33.333 26.70 12.05 40.82 1.94
2480 3268 7.501225 AGGTGCTTCTAAGTACTTTTAGCAAAA 59.499 33.333 26.70 12.30 40.82 2.44
2481 3269 6.996282 AGGTGCTTCTAAGTACTTTTAGCAAA 59.004 34.615 26.70 12.78 40.82 3.68
2482 3270 6.531021 AGGTGCTTCTAAGTACTTTTAGCAA 58.469 36.000 26.70 15.79 40.82 3.91
2483 3271 6.110411 AGGTGCTTCTAAGTACTTTTAGCA 57.890 37.500 23.73 23.73 40.82 3.49
2484 3272 5.581479 GGAGGTGCTTCTAAGTACTTTTAGC 59.419 44.000 14.49 18.46 40.82 3.09
2485 3273 6.937392 AGGAGGTGCTTCTAAGTACTTTTAG 58.063 40.000 14.49 6.24 40.82 1.85
2486 3274 6.930068 AGGAGGTGCTTCTAAGTACTTTTA 57.070 37.500 14.49 0.00 40.82 1.52
2487 3275 5.827326 AGGAGGTGCTTCTAAGTACTTTT 57.173 39.130 14.49 0.00 40.82 2.27
2488 3276 5.307196 TCAAGGAGGTGCTTCTAAGTACTTT 59.693 40.000 14.49 0.00 40.82 2.66
2489 3277 4.838986 TCAAGGAGGTGCTTCTAAGTACTT 59.161 41.667 13.68 13.68 40.82 2.24
2490 3278 4.417437 TCAAGGAGGTGCTTCTAAGTACT 58.583 43.478 10.19 0.00 40.82 2.73
2491 3279 4.463186 TCTCAAGGAGGTGCTTCTAAGTAC 59.537 45.833 2.68 2.68 40.37 2.73
2492 3280 4.673968 TCTCAAGGAGGTGCTTCTAAGTA 58.326 43.478 0.00 0.00 0.00 2.24
2493 3281 3.511477 TCTCAAGGAGGTGCTTCTAAGT 58.489 45.455 0.00 0.00 0.00 2.24
2494 3282 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
2495 3283 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
2496 3284 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
2497 3285 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
2498 3286 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
2499 3287 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
2500 3288 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
2501 3289 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
2529 3317 4.976224 GACTCTTTCTAGTCCCTGAGAC 57.024 50.000 0.00 0.00 46.71 3.36
2548 3336 5.642491 GGTGTTTGGTTCTTAGTCATAGGAC 59.358 44.000 0.00 0.00 44.66 3.85
2549 3337 5.308497 TGGTGTTTGGTTCTTAGTCATAGGA 59.692 40.000 0.00 0.00 0.00 2.94
2550 3338 5.411669 GTGGTGTTTGGTTCTTAGTCATAGG 59.588 44.000 0.00 0.00 0.00 2.57
2551 3339 5.411669 GGTGGTGTTTGGTTCTTAGTCATAG 59.588 44.000 0.00 0.00 0.00 2.23
2552 3340 5.072600 AGGTGGTGTTTGGTTCTTAGTCATA 59.927 40.000 0.00 0.00 0.00 2.15
2553 3341 4.141251 AGGTGGTGTTTGGTTCTTAGTCAT 60.141 41.667 0.00 0.00 0.00 3.06
2554 3342 3.201266 AGGTGGTGTTTGGTTCTTAGTCA 59.799 43.478 0.00 0.00 0.00 3.41
2555 3343 3.816994 AGGTGGTGTTTGGTTCTTAGTC 58.183 45.455 0.00 0.00 0.00 2.59
2556 3344 3.945640 AGGTGGTGTTTGGTTCTTAGT 57.054 42.857 0.00 0.00 0.00 2.24
2557 3345 5.374071 ACTAAGGTGGTGTTTGGTTCTTAG 58.626 41.667 0.00 0.00 38.54 2.18
2558 3346 5.376756 ACTAAGGTGGTGTTTGGTTCTTA 57.623 39.130 0.00 0.00 0.00 2.10
2559 3347 4.245251 ACTAAGGTGGTGTTTGGTTCTT 57.755 40.909 0.00 0.00 0.00 2.52
2560 3348 3.945640 ACTAAGGTGGTGTTTGGTTCT 57.054 42.857 0.00 0.00 0.00 3.01
2561 3349 4.643334 AGAAACTAAGGTGGTGTTTGGTTC 59.357 41.667 0.00 0.00 34.55 3.62
2562 3350 4.606210 AGAAACTAAGGTGGTGTTTGGTT 58.394 39.130 0.00 0.00 34.55 3.67
2563 3351 4.245251 AGAAACTAAGGTGGTGTTTGGT 57.755 40.909 0.00 0.00 34.55 3.67
2564 3352 5.592104 AAAGAAACTAAGGTGGTGTTTGG 57.408 39.130 0.00 0.00 34.55 3.28
2565 3353 6.394809 ACAAAAGAAACTAAGGTGGTGTTTG 58.605 36.000 0.00 0.00 34.55 2.93
2566 3354 6.599356 ACAAAAGAAACTAAGGTGGTGTTT 57.401 33.333 0.00 0.00 36.73 2.83
2567 3355 6.014925 ACAACAAAAGAAACTAAGGTGGTGTT 60.015 34.615 0.00 0.00 31.65 3.32
2568 3356 5.479027 ACAACAAAAGAAACTAAGGTGGTGT 59.521 36.000 0.00 0.00 30.84 4.16
2569 3357 5.961272 ACAACAAAAGAAACTAAGGTGGTG 58.039 37.500 0.00 0.00 0.00 4.17
2570 3358 6.599356 AACAACAAAAGAAACTAAGGTGGT 57.401 33.333 0.00 0.00 0.00 4.16
2571 3359 7.899178 AAAACAACAAAAGAAACTAAGGTGG 57.101 32.000 0.00 0.00 0.00 4.61
2665 3453 9.405587 ACCAAATACTGTTTTCAAATGATTACG 57.594 29.630 0.00 0.00 0.00 3.18
2748 3536 1.546961 AACTACCGACCACTCCTCTG 58.453 55.000 0.00 0.00 0.00 3.35
2765 3553 6.321181 AGCTAGCTAGAGATGCTCCATATAAC 59.679 42.308 25.15 0.11 41.46 1.89
2794 3582 9.988815 CTACTAAAATTAGACTCATGCATACCT 57.011 33.333 0.00 0.00 34.84 3.08
2832 3620 1.076677 AGTAGAGAAGTTGTCCCGGGA 59.923 52.381 22.63 22.63 0.00 5.14
2875 3663 4.599434 TCCGCAACGCAACGCAAC 62.599 61.111 0.00 0.00 0.00 4.17
2876 3664 4.599434 GTCCGCAACGCAACGCAA 62.599 61.111 0.00 0.00 0.00 4.85
2913 3701 0.241749 CGCTTTTGGCAGCAGATCAA 59.758 50.000 0.00 0.00 40.09 2.57
2950 3738 1.525765 AACACCATCACACGCTGCA 60.526 52.632 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.