>input_sequence_63659
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------------------------------------------------------ATGGTTGTGGCGGAGGCCGGCGACGA
GATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGACCGGGAGCGGCGGCCCGAGGACGAAACCACCGTCG
GCGACGGCGGCTGCAGCGACGACGAGAGGGCCGGCGGCGGCGCCGCCGCCGAGAGCAGCGCGTTCTGGGCGGAGCAGCTC
TCCCATTTGCATGTAAGTTAATGGAGTCGATCGTCGTGAACTGGTTGGCGTGTGT--------GCTTGGCTGTTTGTCAT
CGCATCATCGGGCGGCATGTAAATTAATCTCGCCGTCACGAATGCGTACACGCAGGAGGTGCTGGGCAAGATGAGCTCGG
CGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCGTCAGGCATGCGCGGTCCGGCACCGCCACCGCGGCAGCTGGCGTC
TGCTCCTCCTGCGCGACCCGCGCGACGGCCGGCGGTGGGTGCCGGGGCTGCACGCTCCGGTCCGTCGCGGCGCGGCTGCG
CGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGCTCGGCGGAGTTCCCCGCGGGGGAGCACAGCTACG
TGGACGTGGTGGTGCCGACGAGGAGCGGCAGGGCGGTGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCCGAGTTCGCCATG
GCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCCGCGCTCCCGGAGGCGTTCGTGGGCAGGGCGGAGAAGCTGCGCGC
CGTGGTCGCGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGGGAGAGCAGCCTGCACATGGCGCCCTGGAGGAAGCGCC
GGTACATGGAGGCCAAGTGGCTCGGCACGCCGGACCGCCTCTTGGCAACCACCGGCGCCGGCGCGGGTGCCCCCGTGGCG
GCCGGGTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTTCGGCGGCCGGACCGCCGT
GGAGGTCGCGTGA-------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G339700
TTTTTCTTTG-TTTATTTGCAAGCAAGCATGGAAGCTTAATTAATTGCTGAGAAAATTTCTACCTTCGTATGGTAAGTGG
TCGGCCGTGCGTTAACTATTCTGTTGT------------TTCCCAGCATATGCACCTTTGTTTTTTGTTTTCTTTCATCC
ATGAAGACCACCATCTGTTGGTCCAAGAAAAGATGAGCTCTCCCGACTATGAAGCGATGGTGGTACCTTCAATTGAAGAC
CACCATCTGCTTCGTTTTCTCAATTATATACTCCGCGGTGGTGGTCCCAATGATGGGAGTATATTTTGCGAATCATTATC
TTATGTCGATTCTAGACATTCAGTCATGAGAGAATAAGTCAAATTACATCTAAGAAATTTAAATTATCATCATTTTGATG
GAATAATATTTTTAGTGCTTTTTTTATGTGGTGTTGTGCTTTATCTAGCTGGAATAATAGTCATAGATTTATATTTTTAT
CCTCTCATTTAGCTCGAAACTAGCTCGAGATCAACTCGAAATTGTTACAAGCTAAGCATGAGTCATGTTCTACAGCTCGA
CCTTGAGCTTCACTTAGTTTGAGCTCGCTCGAATTTTAATATGAGTTGAGCTGAGCCATGTGCAACTCGCTCGAACTCGA
CTTGTTTGCAGCCCTAAACATTGCGTATGTGTAGCATTGCTCGGTGAACGTTTAGTAAATTGGAAGGAGTCTGTAAAGCC
CCGTAACTGTTCGTGCATCTAGCATTTTTTGCTCCTCCGCAGAGGATCAAGGCCATGAACCGACGTGTGATCGTGCTGTT
CAATTATCCCTAGCGACCGGGGC-CCCACGCCATCTGGAACTGCCTCATCCACTCCGCGCGGGTCCCGCCGCGAGCACCG
TACCATCCACTGCCGCCTCGCCACGTCCGCCGCGTCTCCGGGTATATAAGCCGGCGGGAAGGAGCCCGCAGCTGACCACA
CGGAGCAACGTGAGCCACGCACACCAGATTTACAACCAAGCACGAGAGAAGGAAATGGTTGTGGCGGAGGCCGGCGACGA
GATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGACCGGGAGCGGCGGCCCGAGGACGAAACCACCGTCG
GCGACGGCGGCTGCAGCGACGACGAGAGGGCCGGCGGCGGCGCCGCCGCCGAGAGCAGCGCGTTCTGGGCGGAGCAGCTC
TCCCATTTGCATGTAAGTTAATGGAGTCGATCGTCGTGAACTGGTTGGCGTGTGT--------GCTTGGCTGTTTGTCAT
CGCATCATCGGGCGGCATGTAAATTAATCTCGCCGTCACGAATGCGTACACGCAGGAGGTGCTGGGCAAGATGAGCTCGG
CGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCGTCAGGCATGCGCGGTCCGGCACCGCCACCGCGGCAGCTGGCGTC
TGCTCCTCCTGCGCGACCCGCGCGACGGCCGGCGGTGGGTGCCGGGGCTGCACGCTCCGGTCCGTCGCGGCGCGGCTGCG
CGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGCTCGGCGGAGTTCCCCGCGGGGGAGCACAGCTACG
TGGACGTGGTGGTGCCGACGAGGAGCGGCAGGGCGGTGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCCGAGTTCGCCATG
GCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCCGCGCTCCCGGAGGCGTTCGTGGGCAGGGCGGAGAAGCTGCGCGC
CGTGGTCGCGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGGGAGAGCAGCCTGCACATGGCGCCCTGGAGGAAGCGCC
GGTACATGGAGGCCAAGTGGCTCGGCACGCCGGACCGCCTCTTGGCAACCACCGGCGCCGGCGCGGGTGCCCCCGTGGCG
GCCGGGTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTTCGGCGGCCGGACCGCCGT
GGAGGTCGCGTGAGCGATCGATCACACTCGCACCTGGAGATGGCTGCAACCTGTG-AACTGCCGGCCTGCGAAATTAC--
--CACGAATACATACATACATACATACA-----TACCTATGAATTGAATTCTCGTGTGGGAATACACTG-----------
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------------------TTTGCTTGCTCCCTCGGTGATCAAAACCGCCAAGGATGCAGCTGCTCCTTCATTTACCGA--
-----------------------------------------------------------------------------GCG
CTTCGGGTAGGGGCGTTGGCCTCAATGATCTTTGCTCCGGTGAACCAACCCACCCAGCTA------------TCTCTTAC
GCAGCGATCGACCACAGCCGAGGTGATCAATCGATGATAAATGCCACACG-TGTGGCACGAACACATGGCAACTCTAGAT
G-------------------------------------------------------------------------------
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---------------------------------------------------------------------------TTTTT
ATGACAAATTTAGTGACGCGAGGATGTTTAGTTGTCAAGTACGATAACATTTTTGTTCGGATGCCAATTTTTAGGGGTGT
TTGGTTCCAGGGACCTTTTTATGTTGGGAATAGAAAAAGTCCCTAGCAAATCAAATAGGGTGAGACTTTTTGCTAAAAGT
ACTTAGAAGCACCTCCTTGAGAGTCTTTTTTAAAAAGTCTCAGGGACTAGAAAGAGTCCTATGACTAAGAACCAAACACC
ACCTTAGTTTCTTTTGTTGTTTTTTCTTTTCGAATGGCAACATTGATTGTAAAAACCGTCAGGGTCAAAGTGCTTCGTGC
AACACGTGTGACCGTAATCATTTGAAAACAGTATTTGGTTTGATCTCTAGCGACCTACCCCTGCACTGCGATTTGAGTAT
CTTAATACAGCGAATCAGAGGAGTGGTCGGTAGTTATATGGAGCATCTCTAGCTAGCTAGTAGGTATGCATGAGTCTAAT
TTTAGTAGGGAGATTTGTGTCCCGGGACAACTTCTCTACTAGCTTAACAGGTCTGCCCTTGCGTTGCGTTGCGTTGCGGA
CTCATTCCACCATGTATGGTTTGATCTGCTGCCAAAAGCGAGGACGACGGGGCAACATGCAGCGTGTGATGGTGTTGTCT
CATCACTGATGCTACTCG
>chr5B_1
TTTTTCTTTGTTTTATTTCCAAGCAAGCATGGAAGCTTAATTAATTGCAAAGGAAATTTAGACCTTAGTATGGTATGTGG
TCGGCCGTGCATTAAATATTCTGTTGTTTCTAGCAAAAGTTCCCAGCAAATGCACCTTTCTTTTTC-TTTTCTTTCATCC
ACGAAGACCGCCATATGTTGGTCCAAGCGAAGATGAGCTCTCCCGACTATGAAGCGATGGTCGTACTTTCAACTGAAGAC
CACCAGCTGCTTCGTTTTCCCAGTTATATC---------------------------------TTTTGTGAATCGTTATC
TTATATCGATACTAGACATTCGGTTGTGAGAGAATAAGTCAAATTACATCGAAGAAATTTAAAGTATCATCATTTTGATG
GAATAATATTTTTAGTGCTTTTTTATGTT-GTGTTGTGCCTTATCTAGTTGGAATAATAGTCGTAGATTT---TTTTAAT
CGTCTCATTTAGCTCGAAACTAGCTCGAGATCGACTCAAGATCATTACAAGCTAAGTATGAGTCATGTTCTACAGCTCGA
CCTTGAGCTTCACTTAGTTTGAGCTCGCCCGAATTTTAATATGAGTTGAGCCGAGCCATGTGCAACTCGCTCGAATTCAA
CTCGTTTGCAGCCCTA----------------------------------------------------------------
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>chr1D_735
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---------------------------TTTGTTCGTCCGCAGAGGATCAAGGCCATCAACCGACGTGTGATCGTGCTGTT
CAATTATCCCTACCGACCGGGGC-CCTACGCCATCTGGAACTGCCTCATCCACTCCGCGCGGGTCCC---GCGAGCACCG
TACCATCCATTGCCGCCTCGCCACGTCCCCCGCGCCTCCGGGTATATAAACCGGCGGGAAGGAGCCTGCAGCTGAC--CA
CGGAGCAACGTGAGCCACGCACACCAGATTTACAACTAATCAGAAGAGACGGAAATGGTTGTGGCGGAGGCCGGCGACGA
GATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGAGCGGGAGCGGTGGCCCGAGGACGAAGCCACCGTCG
GCGACGGCGACTGCAGCGACGACGAGAGGGCCAGCGGTGGCGCCGCCACCGAGAGCAGCGCGTTCTGGGCGGAGCAGCTC
TCGCATTTGCATGTAAGTTAATGGAGCCGC----CGTGAACTGGTTGGCGTGTTGTTGTTCCGTTGTTGGGCGCG-----
-------------GGCATGTAAATTGATCTCGCCGTGACAAATGCGTACGTGCAGGAGGTGCTGGGCAAGACGAGCGCGG
CGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCCTCGGGCAGGCGCGCTCCG---CCGCCACCGCGGCAGCCGGCGTC
TGCTCCTCCTGCGCGACCCGCGCGACGGCCGGCGGCGGGTGCCGGGGCTGCACGCTCCGGTCCGTCGCGGGGCGGCTGCG
CGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGATCGGCGGAGTTCCCCGCGGGGGAGCACAGCTACG
TGGACGTGGTGGTGCCGACGAGGAGCGGCAGGGCGGTGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCCGAGTTCGCCATG
GCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCCGCGCTCCCGGAGGCGTTCGTGGGCAGGGCGGAGAAGCTGCGGGC
CGTGGTCGGGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGGGAGAGCAGCCTGCACATGGCGCCCTGGAGGAAGCGCC
GGTACATGGAGGCCAAGTGGCTCGGCACGCCAGACCGCCTCTTGGCAACCACCGGCGCCGGCGCGGGTGCCCCCGTGGCG
GCCGGGTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTTCGGCGGCCGGACCGCCGT
GGAGGTCGCGTGAGCGATCGATCACACTCACACCTGGAGATGGCTGCAACCTGTG-AACTGCCGGCCGACGAAATTACTT
ACCACGGTCCACAA-ATACAAACATATA-----TACCTATGAATTGAATTCTCAG--------------TATTTGGCTCC
AAGCGCGTACGTCATGAGCTGCCCCGGCAGCGACATCGATCGATTAGATTAGCTG-------------------------
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---------------------------------------------------------------------GTAAGCAAATC
ACTAGGAGGCTAGGAGCCTTTGCTTGCTCCCTCGGTGATCAAAACCGCCAAGGATGCAGGTGCTGCTTCATTTACCGA--
-----------------------------------------------------------------------------GCG
CTTCGGGTAGGGGCGTTGGCCTCGATGATCTTTGCTCCGGTGAACGAACCCACCCAGCTGCGTCCTTGGCAGTCTCTTAC
GCAGCGATCGACCACGGCCGAGGTGATCAATCGATGATAAATGGCTCACG-TGTGGCACCAACACATGGCAAAGCTGAAT
GGC-----------------------------------------------------------------------------
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----------------------------------------------------------------------------TTTT
ATGATAAATTTAATGGTGCGAGGATGTTTGGTTGTCAAGTATGATAACTTTTTTGTTCGGATGCCAAATT----------
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---TTAGTTTCTTTTGTTGTTTTTTCTTTTCGAATGGCAACATTAATTGTAAAAACCGTCAGGATCGGAGTGCTTCGTGC
AACATGTGTGACACTAATCATTTGAAAACTGTATTTGGTTTGATCTCTAGCGACCTACCCCTGCACTGCGATTTGGGTAT
CTCAATACAGCGAATTAGAGGAGTGGTCGGTACTTATATAGAGCATCTCTAGCTAGCTAGTGGGTATGCATGAGTCTAAT
TTTAGTAGGGAGATTTGTGGCCCGGGACAACTTCTCTACTAGCTTAACAGGTCTGCCCTT-----GCGTTGCGTTGCGGA
CTCATTCCATCATGTATGGTCTGATCTGCTGCCAAAAGCGAGGACGACGGGGCAACAGGCAGCATG--------------
------------------
>chr1B_738
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------------------------------GCTCCTCCGCAGAGGATCAAGGCCATCAACCGACGTGTGATCGTGCTGTT
CAATTATCCCTACCGACCGGGGGGCCCACGCCATCTGGAACTGCCTCATCCACTCCGCGCGGGTCCC---GCGAGCACCG
TACCATCCATTGCCGCCTCGCCACGTCCGCCGCGTCTCCGGGTATACAAGCCGGCGGGAAGGACCCTGCAGCTGAC--CA
CGGAGCAACGTGAGCCACGCACACCAGATTTACAACCAAGCACG-----AGGAAATGGTTGTGGCGGAGGCCGGCGACGA
GATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGACCGGGAGCGGTGGCCCGAGGACGAAACCTCCGTCG
GCGACGGCGACTGCAGCGACGACGAGAGGGCCGGTGGTGGCGCCGCCGCCGAGAGCAGCGCGTTCTGGGCGGAGCAGCTC
TCGCATTTGCATGTAAGTTAATGGAGTCGC----CGCGAACTGGTTGGCGTGTGTCGGTGTGTGCATGGCTTTTTGTTAT
TGCATCATCGGGCGGCATGTAAATTAATCTCGCCGTGACGAATGCGTACGTGCAGGAGGTACTGGGCAAGACGAGCGCGG
CGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCGTGAGGCAGGCGCGCT------CCGCCACCGCGGCAGCAGGCGTC
TGCTCT---TGCGCGACCCGCGCGACGGCCGGCGGCGGGTGCCGGGGCTGCACGCTCCGGTCGGTCGCGGGGCGGCTGCG
CGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGCTCGCCGGAGTTCCCCGCGGGGGAGCACAGCTACG
TGGACGTAGTGGTGCCGACGAGGAGCGGCAGGGCGATGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCCGAGTTCGCCATG
GCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCGGCGCTGCCGGAGGCGTTCGTGGGCAGGGCGGAGAAGCCGCGGGC
CGTGGTCGGGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGCGAGAGCAGCCTGCACATGGCGCCCTGGAGGAAGCGCC
GGTACATGGAGGCCAAGTGGCTCGGCACGCCGGACCGCCTCTCGCCGGC------CGCGGGCGCCGGTTCCCCCGTGGCG
GCCGGCTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTACGGCGGCCGGACCGCCGT
GGAGGTCGCGTGAGCGATCGAT------CGCACCTGGAGATGGCTGCAACCTGTGGAACTGCCGGCCTACGAAATTAC--
--CACGGTCCACGG-ATACAAACATATATACTGTACCTATGAATTGAATTCTCGTGTAGGAACGACTATTATTTGGCTCC
AAGC--------CATGAGCTACCTCAGCAGCGACATTGATCGTTTAGATTAGGTACTACTCCCTCCGTTCCTAAATACTA
AGTCTTTTTTAAAATTCCGAATATAAACTACATATGAAGCAAAACGAGTGAATCTACACTCTAAAATATATCTATATACA
TTCATATGTAGTACTAGTTTATATTAAAATCTTTAGAAGCATTTATATTAAGAAACGGATGGAGTACTAGTAAGCAAATC
ACTAGGAG--------CCTTTGCTTGCTCCCTCGGTGATCAAAACCGCCAAGGATGCAGGTGCTTGTTCATTTAGACGGG
TCTGATCACCGCGTCGAGCTTCTCAATTCCCTTCGCTGATCTTCCGATCGATGCTGCTGGCGGGCGCGGTTCATGACGCG
CTTGGGGCAGGGCCGTTGGCCTCAATGATCTTTGCTCCGGTGAACGAACCCACCCAGCTGCGTCCATGGCAGTCTCTTAC
GCAGCGAT------CGGCCGAGGTGATCAATCAACGATAAATGGCATAAAATATGACACGAACACATGACAACTCTGAGG
CTGTGTTTGATAGCAAAGTATTATATAAATCAAAGTATCAAAAACTACAGTAATTTTGCCTGTAGGTGTAAGATACCATA
GTTTTATCAAAACAGAGTATTTTGAAGTATTCACAATACATAGAACCTGTTTGGCTGTTGCCGCATAACACTGTAAATTT
TGCTGTTTAGCCGTTGCCTTTAAGCACTTAGCAGCTCTGTTTTTCAAAAAGAGGTTTGGGGTTCTTTTTTTTATGCATTG
AAAAAACTGCAGCTTGCCCAATACTACAGTATTAAAAGTACAGTTGTTAGGGGCAACCAAACAGCTCATTGTAAATAAAA
CTATGGTAATATAAAAAACTGTAGTATTGTCAAAATACTTAGAAAATACTTTGCTATCAAACGGGGCCTGAATATTTTTT
ATGATAAATTTAGTGACGAGAGGATGTTCAGATGTCAAGTATGATAGCTTTTTTTATGTCAAGTTTC-------------
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-----AGTTTTTTTTGTTGTTTTTTATTTTCGGATGGCAACATTATTTGTAAAAAATGTCGGAGCCGGAGCGCTTCATGC
AACACATGTGCTT---ATCATTTGGAAACAGTATTTGATGTGATCTCTAGTGACCTACCCCTGCACTGCGATTTGAGTAT
CTTAATACAGCGAATTAGAGGAGTGGTCGGTACTTATATGGAGCATCTCTAGCTAGCTAGTGGGTATGCATGAGTCTAAT
TTTAGTAGGGAGATATGTGGCCCGGGACAACTTCTCTACTAGCTTAACAGGTCTGACCTT-----GCGTTGCGTTGCGGA
CTCATTCCACCATGTATGGCCTGATCTGCTCTCACAAGAGAGAACGGCGGGGCAACGGCCAGGGTGTGATGGTGTTGT--
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>SNPs
------------------S-----------------------------SS--S------SS-----S--------S----
----------S----S--------------------------------S----------S-----SS-------------
-S-------S----S------------SS--------------------------------S----S-----S-------
-----S-------------S--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----S-----
----S-----S----------S--SS------------------------S------------S----------------
------------------------SSSS-S---------S--------S-------------S-------SSS----S--
-S------------------------------S----S-S--SS------------S-----------------------
----------------------------S----------------------S-----------------------S--S-
--S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-----------------------
------------S------------------------------------------------------SSS----------
---------S--------------------------------------------------------S---------SS--
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-------------------------------------------------------S------------------------
---------S---------------------------S------------------------------------------
--S--------------------------SSSSS-------------------------------S-----S-----S--
S-----------------------------------S------------SS--------------------S----S---
-------------------------------------------S-----S----SSS----------------S------
-----------------------------------S----------------------------------S---------
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-----------------------------------------------------------------------------S--
--------S-----------------------------------------------------------------------
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--------------------------------------------------------------------S-----------
------SSSSSSS-S-----S-----S------------------------------S----SSSSSSS-----------
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-----------------------------------------------------------S----S---------------
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---------------------------------------------S-------------S--------------------
---------------S---------------------------S--------------------------------SS--
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----S------------------------------------S------S------------------S--SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------S---------------------SS------------
------------SS------------------------------------------------------------------
---------------S----------------S----------------------------S------------------
-------------------S----------------------------------------SSSSS---------------
--------------------S------------------------------------S--------------------SS
SSSSSSSSSSSSSSSSSS
>forward_691
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-------------------------------TAGCATTGCTCGGTGAACGT-----------------------------
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>reverse_2144
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---------------------------------------------------------------ACACTGTTTGCTTGCTC
CCT-----------------------------------------------------------------------------
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