Multiple sequence alignment - TraesCS1A01G334200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G334200 chr1A 100.000 2936 0 0 1 2936 521843693 521846628 0.000000e+00 5422.0
1 TraesCS1A01G334200 chr1A 98.106 264 4 1 2673 2936 380319069 380319331 2.670000e-125 459.0
2 TraesCS1A01G334200 chr1D 90.913 2531 163 28 160 2641 426746485 426748997 0.000000e+00 3338.0
3 TraesCS1A01G334200 chr1D 92.353 170 11 2 1 168 426746188 426746357 1.050000e-59 241.0
4 TraesCS1A01G334200 chr1B 91.733 1754 102 12 229 1941 576551724 576553475 0.000000e+00 2396.0
5 TraesCS1A01G334200 chr1B 92.275 233 15 2 2048 2280 576553530 576553759 7.850000e-86 327.0
6 TraesCS1A01G334200 chr1B 93.333 90 6 0 1 90 576551323 576551412 1.840000e-27 134.0
7 TraesCS1A01G334200 chr7A 97.810 274 4 2 2664 2936 708803780 708803508 3.430000e-129 472.0
8 TraesCS1A01G334200 chr7A 97.426 272 5 2 2665 2936 149286482 149286213 2.060000e-126 462.0
9 TraesCS1A01G334200 chr7A 98.106 264 5 0 2673 2936 44741639 44741902 7.410000e-126 460.0
10 TraesCS1A01G334200 chr3B 97.761 268 5 1 2669 2936 41154843 41154577 7.410000e-126 460.0
11 TraesCS1A01G334200 chr6B 98.106 264 4 1 2673 2936 18869617 18869879 2.670000e-125 459.0
12 TraesCS1A01G334200 chr6A 97.727 264 6 0 2673 2936 13967980 13968243 3.450000e-124 455.0
13 TraesCS1A01G334200 chr5A 97.727 264 6 0 2673 2936 43498402 43498139 3.450000e-124 455.0
14 TraesCS1A01G334200 chr5A 97.727 264 6 0 2673 2936 589581023 589581286 3.450000e-124 455.0
15 TraesCS1A01G334200 chr3A 82.432 74 4 5 2328 2401 59822307 59822371 4.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G334200 chr1A 521843693 521846628 2935 False 5422.000000 5422 100.000 1 2936 1 chr1A.!!$F2 2935
1 TraesCS1A01G334200 chr1D 426746188 426748997 2809 False 1789.500000 3338 91.633 1 2641 2 chr1D.!!$F1 2640
2 TraesCS1A01G334200 chr1B 576551323 576553759 2436 False 952.333333 2396 92.447 1 2280 3 chr1B.!!$F1 2279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 445 0.469892 AAAAGGAAGGCACCCACTGG 60.470 55.0 0.00 0.0 37.8 4.0 F
1225 1483 0.394488 TGACGGCGAGGAGAGAAGAT 60.394 55.0 16.62 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1243 1501 0.323629 TCAACCCGGGACTCATTGTC 59.676 55.0 32.02 0.0 44.63 3.18 R
2828 3110 0.107508 GGCATGCCAGCTAGACTTCA 60.108 55.0 32.08 0.0 35.81 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 153 3.528597 ACTCGGTTCCTGAATTCTAGC 57.471 47.619 7.05 0.00 0.00 3.42
102 154 3.100671 ACTCGGTTCCTGAATTCTAGCT 58.899 45.455 7.05 0.00 0.00 3.32
115 170 8.669243 CCTGAATTCTAGCTTCTCGTAATTTTT 58.331 33.333 7.05 0.00 0.00 1.94
147 202 2.814336 GCGGAGAAGACCATCAAAAACT 59.186 45.455 0.00 0.00 0.00 2.66
158 213 8.814038 AGACCATCAAAAACTTAATAGCATCT 57.186 30.769 0.00 0.00 0.00 2.90
161 352 8.253113 ACCATCAAAAACTTAATAGCATCTTGG 58.747 33.333 0.00 0.00 0.00 3.61
165 356 8.296713 TCAAAAACTTAATAGCATCTTGGTGAC 58.703 33.333 0.00 0.00 0.00 3.67
186 377 6.019479 GTGACGATGACAATCTAACTGGATTC 60.019 42.308 0.00 0.00 34.15 2.52
187 378 5.977635 ACGATGACAATCTAACTGGATTCA 58.022 37.500 0.00 0.00 34.15 2.57
188 379 6.406370 ACGATGACAATCTAACTGGATTCAA 58.594 36.000 0.00 0.00 34.15 2.69
190 381 7.390440 ACGATGACAATCTAACTGGATTCAAAA 59.610 33.333 0.00 0.00 34.15 2.44
191 382 7.693951 CGATGACAATCTAACTGGATTCAAAAC 59.306 37.037 0.00 0.00 34.15 2.43
192 383 6.898041 TGACAATCTAACTGGATTCAAAACG 58.102 36.000 0.00 0.00 34.15 3.60
193 384 6.708502 TGACAATCTAACTGGATTCAAAACGA 59.291 34.615 0.00 0.00 34.15 3.85
194 385 7.095229 TGACAATCTAACTGGATTCAAAACGAG 60.095 37.037 0.00 0.00 34.15 4.18
195 386 6.934645 ACAATCTAACTGGATTCAAAACGAGA 59.065 34.615 0.00 0.00 34.15 4.04
196 387 6.969828 ATCTAACTGGATTCAAAACGAGAC 57.030 37.500 0.00 0.00 0.00 3.36
197 388 4.921515 TCTAACTGGATTCAAAACGAGACG 59.078 41.667 0.00 0.00 0.00 4.18
198 389 1.798813 ACTGGATTCAAAACGAGACGC 59.201 47.619 0.00 0.00 0.00 5.19
208 399 4.272504 TCAAAACGAGACGCAAGAAGAAAT 59.727 37.500 0.00 0.00 43.62 2.17
209 400 4.813296 AAACGAGACGCAAGAAGAAATT 57.187 36.364 0.00 0.00 43.62 1.82
210 401 4.813296 AACGAGACGCAAGAAGAAATTT 57.187 36.364 0.00 0.00 43.62 1.82
231 445 0.469892 AAAAGGAAGGCACCCACTGG 60.470 55.000 0.00 0.00 37.80 4.00
254 468 5.046807 GGGCTAGTACAAGTCAAGAACCTTA 60.047 44.000 0.00 0.00 0.00 2.69
257 471 6.368243 GCTAGTACAAGTCAAGAACCTTAACC 59.632 42.308 0.00 0.00 0.00 2.85
292 506 3.587797 AGCATGCAGTTCCAAATTCTG 57.412 42.857 21.98 0.00 0.00 3.02
310 524 4.142609 TCTGAGTCACAGCAATAATCCC 57.857 45.455 0.00 0.00 45.38 3.85
350 564 6.668645 ACCAGCATCAATTAGTACCCAAATA 58.331 36.000 0.00 0.00 0.00 1.40
462 689 2.678324 AGCTAGCTTGTTTCGACAGAC 58.322 47.619 12.68 0.00 0.00 3.51
568 796 1.757118 CATGTCACGACCCAGGTATCT 59.243 52.381 0.00 0.00 0.00 1.98
608 848 7.956420 TTGTCTCGTAGTAATGTCATGTTTT 57.044 32.000 0.00 0.00 0.00 2.43
814 1058 1.503542 CATGAGGCAAGCACGTTCC 59.496 57.895 0.00 0.00 0.00 3.62
859 1117 4.250464 CATTTACACCCTGTACGTGACAT 58.750 43.478 0.00 0.00 37.45 3.06
1163 1421 2.866028 GCCAGAACAGAAGCAGCG 59.134 61.111 0.00 0.00 0.00 5.18
1225 1483 0.394488 TGACGGCGAGGAGAGAAGAT 60.394 55.000 16.62 0.00 0.00 2.40
1311 1569 1.975363 GCGATGAGGTGAGCAACAGC 61.975 60.000 5.24 5.24 46.00 4.40
1328 1586 2.325082 GCATTGCCGTCGTTGGAGT 61.325 57.895 0.00 0.00 0.00 3.85
1337 1595 3.103911 CGTTGGAGTCGACGGTGC 61.104 66.667 10.46 0.00 44.68 5.01
1411 1669 0.323542 AGACAGGGAGGTGTACGAGG 60.324 60.000 0.00 0.00 0.00 4.63
1459 1717 0.456995 GGAGGTCGACGAGCTGAAAG 60.457 60.000 32.19 0.00 40.67 2.62
1832 2090 1.370587 GAGGAGACGGACGAGGACAG 61.371 65.000 0.00 0.00 0.00 3.51
1871 2129 2.747686 GGGCTCCGGTGTGAAGAA 59.252 61.111 0.00 0.00 0.00 2.52
2008 2278 1.678101 GGGTATTTGCTGATGTGCTCC 59.322 52.381 0.00 0.00 0.00 4.70
2151 2427 1.429463 CACTATTATTCCGAGCCGCC 58.571 55.000 0.00 0.00 0.00 6.13
2155 2431 0.034059 ATTATTCCGAGCCGCCAGAG 59.966 55.000 0.00 0.00 0.00 3.35
2167 2443 3.882131 GCCAGAGGCTGATTTACCA 57.118 52.632 0.00 0.00 46.69 3.25
2198 2474 1.136141 CGAACACTGTGCTGCTGAATC 60.136 52.381 7.90 0.00 0.00 2.52
2218 2494 3.930336 TCAGTGATGATGAACACCAGAC 58.070 45.455 0.00 0.00 37.69 3.51
2301 2577 3.746045 ACTTAAGCAAGTCTCGGTCAA 57.254 42.857 1.29 0.00 41.25 3.18
2302 2578 4.067972 ACTTAAGCAAGTCTCGGTCAAA 57.932 40.909 1.29 0.00 41.25 2.69
2307 2583 2.143122 GCAAGTCTCGGTCAAATGACA 58.857 47.619 14.93 0.00 46.47 3.58
2317 2593 7.224753 GTCTCGGTCAAATGACACAACATATAT 59.775 37.037 14.93 0.00 46.47 0.86
2318 2594 7.768582 TCTCGGTCAAATGACACAACATATATT 59.231 33.333 14.93 0.00 46.47 1.28
2319 2595 7.915508 TCGGTCAAATGACACAACATATATTC 58.084 34.615 14.93 0.00 46.47 1.75
2320 2596 6.845782 CGGTCAAATGACACAACATATATTCG 59.154 38.462 14.93 1.65 46.47 3.34
2321 2597 6.632834 GGTCAAATGACACAACATATATTCGC 59.367 38.462 14.93 0.00 46.47 4.70
2423 2705 8.389779 TCACAAATTTAGCATCTACAACTTCA 57.610 30.769 0.00 0.00 0.00 3.02
2431 2713 8.718102 TTAGCATCTACAACTTCATTAAGTCC 57.282 34.615 0.00 0.00 45.37 3.85
2456 2738 2.280628 GGACTGAGATTTAGCAACCCG 58.719 52.381 0.00 0.00 0.00 5.28
2458 2740 1.628846 ACTGAGATTTAGCAACCCGGT 59.371 47.619 0.00 0.00 0.00 5.28
2473 2755 1.600107 CGGTTTGCAGGTAGGCCTA 59.400 57.895 8.91 8.91 44.97 3.93
2543 2825 1.507141 GAGGTTGTTGGGACTGTGCG 61.507 60.000 0.00 0.00 0.00 5.34
2565 2847 3.669557 GCAAACACAGTGTCGTCAAACTT 60.670 43.478 6.67 0.00 0.00 2.66
2569 2851 3.749088 ACACAGTGTCGTCAAACTTCAAA 59.251 39.130 0.00 0.00 0.00 2.69
2574 2856 4.693566 AGTGTCGTCAAACTTCAAACTTCA 59.306 37.500 0.00 0.00 0.00 3.02
2625 2907 8.900511 CATTTACTTGAAATGTATGGTGTCAG 57.099 34.615 2.52 0.00 46.40 3.51
2647 2929 9.575783 GTCAGTTTTGACCACTAAAACAAATAA 57.424 29.630 13.68 0.00 46.47 1.40
2681 2963 9.872757 TCAAACACTAAAAATACGAGTGAATTC 57.127 29.630 8.18 0.00 42.65 2.17
2682 2964 9.113876 CAAACACTAAAAATACGAGTGAATTCC 57.886 33.333 8.18 0.00 42.65 3.01
2683 2965 7.057149 ACACTAAAAATACGAGTGAATTCCG 57.943 36.000 8.18 1.92 42.65 4.30
2684 2966 6.091713 ACACTAAAAATACGAGTGAATTCCGG 59.908 38.462 8.18 0.00 42.65 5.14
2685 2967 6.091713 CACTAAAAATACGAGTGAATTCCGGT 59.908 38.462 0.00 0.00 42.65 5.28
2686 2968 5.952526 AAAAATACGAGTGAATTCCGGTT 57.047 34.783 0.00 0.00 0.00 4.44
2687 2969 5.952526 AAAATACGAGTGAATTCCGGTTT 57.047 34.783 0.00 0.00 0.00 3.27
2688 2970 5.952526 AAATACGAGTGAATTCCGGTTTT 57.047 34.783 0.00 0.00 0.00 2.43
2689 2971 5.952526 AATACGAGTGAATTCCGGTTTTT 57.047 34.783 0.00 0.00 0.00 1.94
2690 2972 7.437793 AAATACGAGTGAATTCCGGTTTTTA 57.562 32.000 0.00 0.00 0.00 1.52
2691 2973 4.737353 ACGAGTGAATTCCGGTTTTTAC 57.263 40.909 0.00 3.67 0.00 2.01
2692 2974 3.499537 ACGAGTGAATTCCGGTTTTTACC 59.500 43.478 0.00 0.00 0.00 2.85
2693 2975 3.120095 CGAGTGAATTCCGGTTTTTACCC 60.120 47.826 0.00 0.00 0.00 3.69
2694 2976 3.159472 AGTGAATTCCGGTTTTTACCCC 58.841 45.455 0.00 0.00 0.00 4.95
2695 2977 2.231964 GTGAATTCCGGTTTTTACCCCC 59.768 50.000 0.00 0.00 0.00 5.40
2696 2978 2.110365 TGAATTCCGGTTTTTACCCCCT 59.890 45.455 0.00 0.00 0.00 4.79
2697 2979 3.333082 TGAATTCCGGTTTTTACCCCCTA 59.667 43.478 0.00 0.00 0.00 3.53
2698 2980 4.017314 TGAATTCCGGTTTTTACCCCCTAT 60.017 41.667 0.00 0.00 0.00 2.57
2699 2981 4.613265 ATTCCGGTTTTTACCCCCTATT 57.387 40.909 0.00 0.00 0.00 1.73
2700 2982 4.401048 TTCCGGTTTTTACCCCCTATTT 57.599 40.909 0.00 0.00 0.00 1.40
2701 2983 4.401048 TCCGGTTTTTACCCCCTATTTT 57.599 40.909 0.00 0.00 0.00 1.82
2702 2984 4.087907 TCCGGTTTTTACCCCCTATTTTG 58.912 43.478 0.00 0.00 0.00 2.44
2703 2985 4.087907 CCGGTTTTTACCCCCTATTTTGA 58.912 43.478 0.00 0.00 0.00 2.69
2704 2986 4.082081 CCGGTTTTTACCCCCTATTTTGAC 60.082 45.833 0.00 0.00 0.00 3.18
2705 2987 4.523558 CGGTTTTTACCCCCTATTTTGACA 59.476 41.667 0.00 0.00 0.00 3.58
2706 2988 5.186215 CGGTTTTTACCCCCTATTTTGACAT 59.814 40.000 0.00 0.00 0.00 3.06
2707 2989 6.295405 CGGTTTTTACCCCCTATTTTGACATT 60.295 38.462 0.00 0.00 0.00 2.71
2708 2990 7.455058 GGTTTTTACCCCCTATTTTGACATTT 58.545 34.615 0.00 0.00 0.00 2.32
2709 2991 7.940137 GGTTTTTACCCCCTATTTTGACATTTT 59.060 33.333 0.00 0.00 0.00 1.82
2710 2992 9.344772 GTTTTTACCCCCTATTTTGACATTTTT 57.655 29.630 0.00 0.00 0.00 1.94
2711 2993 8.910351 TTTTACCCCCTATTTTGACATTTTTG 57.090 30.769 0.00 0.00 0.00 2.44
2712 2994 7.857404 TTACCCCCTATTTTGACATTTTTGA 57.143 32.000 0.00 0.00 0.00 2.69
2713 2995 6.109156 ACCCCCTATTTTGACATTTTTGAC 57.891 37.500 0.00 0.00 0.00 3.18
2714 2996 5.604650 ACCCCCTATTTTGACATTTTTGACA 59.395 36.000 0.00 0.00 0.00 3.58
2715 2997 5.931724 CCCCCTATTTTGACATTTTTGACAC 59.068 40.000 0.00 0.00 0.00 3.67
2716 2998 6.239572 CCCCCTATTTTGACATTTTTGACACT 60.240 38.462 0.00 0.00 0.00 3.55
2717 2999 7.039363 CCCCCTATTTTGACATTTTTGACACTA 60.039 37.037 0.00 0.00 0.00 2.74
2718 3000 7.812669 CCCCTATTTTGACATTTTTGACACTAC 59.187 37.037 0.00 0.00 0.00 2.73
2719 3001 8.576442 CCCTATTTTGACATTTTTGACACTACT 58.424 33.333 0.00 0.00 0.00 2.57
2720 3002 9.965824 CCTATTTTGACATTTTTGACACTACTT 57.034 29.630 0.00 0.00 0.00 2.24
2723 3005 9.744468 ATTTTGACATTTTTGACACTACTTACC 57.256 29.630 0.00 0.00 0.00 2.85
2724 3006 6.870971 TGACATTTTTGACACTACTTACCC 57.129 37.500 0.00 0.00 0.00 3.69
2725 3007 5.766174 TGACATTTTTGACACTACTTACCCC 59.234 40.000 0.00 0.00 0.00 4.95
2726 3008 5.697067 ACATTTTTGACACTACTTACCCCA 58.303 37.500 0.00 0.00 0.00 4.96
2727 3009 6.311735 ACATTTTTGACACTACTTACCCCAT 58.688 36.000 0.00 0.00 0.00 4.00
2728 3010 6.780522 ACATTTTTGACACTACTTACCCCATT 59.219 34.615 0.00 0.00 0.00 3.16
2729 3011 7.289084 ACATTTTTGACACTACTTACCCCATTT 59.711 33.333 0.00 0.00 0.00 2.32
2730 3012 8.798402 CATTTTTGACACTACTTACCCCATTTA 58.202 33.333 0.00 0.00 0.00 1.40
2731 3013 7.989416 TTTTGACACTACTTACCCCATTTAG 57.011 36.000 0.00 0.00 0.00 1.85
2732 3014 5.093849 TGACACTACTTACCCCATTTAGC 57.906 43.478 0.00 0.00 0.00 3.09
2733 3015 4.117685 GACACTACTTACCCCATTTAGCG 58.882 47.826 0.00 0.00 0.00 4.26
2734 3016 3.770933 ACACTACTTACCCCATTTAGCGA 59.229 43.478 0.00 0.00 0.00 4.93
2735 3017 4.223477 ACACTACTTACCCCATTTAGCGAA 59.777 41.667 0.00 0.00 0.00 4.70
2736 3018 5.180271 CACTACTTACCCCATTTAGCGAAA 58.820 41.667 0.00 0.00 0.00 3.46
2737 3019 5.820947 CACTACTTACCCCATTTAGCGAAAT 59.179 40.000 0.00 0.00 35.56 2.17
2738 3020 6.317893 CACTACTTACCCCATTTAGCGAAATT 59.682 38.462 1.62 0.00 32.73 1.82
2739 3021 6.888088 ACTACTTACCCCATTTAGCGAAATTT 59.112 34.615 1.62 0.00 32.73 1.82
2740 3022 6.203808 ACTTACCCCATTTAGCGAAATTTC 57.796 37.500 8.20 8.20 32.73 2.17
2741 3023 5.712917 ACTTACCCCATTTAGCGAAATTTCA 59.287 36.000 17.99 0.00 32.73 2.69
2742 3024 6.379988 ACTTACCCCATTTAGCGAAATTTCAT 59.620 34.615 17.99 8.35 32.73 2.57
2743 3025 5.262588 ACCCCATTTAGCGAAATTTCATC 57.737 39.130 17.99 8.84 32.73 2.92
2744 3026 4.099419 ACCCCATTTAGCGAAATTTCATCC 59.901 41.667 17.99 5.80 32.73 3.51
2745 3027 4.099266 CCCCATTTAGCGAAATTTCATCCA 59.901 41.667 17.99 0.00 32.73 3.41
2746 3028 5.221501 CCCCATTTAGCGAAATTTCATCCAT 60.222 40.000 17.99 0.79 32.73 3.41
2747 3029 6.282930 CCCATTTAGCGAAATTTCATCCATT 58.717 36.000 17.99 0.00 32.73 3.16
2748 3030 6.762661 CCCATTTAGCGAAATTTCATCCATTT 59.237 34.615 17.99 0.00 32.73 2.32
2749 3031 7.280652 CCCATTTAGCGAAATTTCATCCATTTT 59.719 33.333 17.99 0.00 32.73 1.82
2750 3032 9.311916 CCATTTAGCGAAATTTCATCCATTTTA 57.688 29.630 17.99 0.00 32.73 1.52
2752 3034 8.696410 TTTAGCGAAATTTCATCCATTTTACC 57.304 30.769 17.99 0.00 0.00 2.85
2753 3035 5.660460 AGCGAAATTTCATCCATTTTACCC 58.340 37.500 17.99 0.00 0.00 3.69
2754 3036 4.808895 GCGAAATTTCATCCATTTTACCCC 59.191 41.667 17.99 0.00 0.00 4.95
2755 3037 5.625656 GCGAAATTTCATCCATTTTACCCCA 60.626 40.000 17.99 0.00 0.00 4.96
2756 3038 6.581712 CGAAATTTCATCCATTTTACCCCAT 58.418 36.000 17.99 0.00 0.00 4.00
2757 3039 7.047271 CGAAATTTCATCCATTTTACCCCATT 58.953 34.615 17.99 0.00 0.00 3.16
2758 3040 7.552330 CGAAATTTCATCCATTTTACCCCATTT 59.448 33.333 17.99 0.00 0.00 2.32
2759 3041 9.898152 GAAATTTCATCCATTTTACCCCATTTA 57.102 29.630 13.40 0.00 0.00 1.40
2761 3043 9.679661 AATTTCATCCATTTTACCCCATTTAAC 57.320 29.630 0.00 0.00 0.00 2.01
2762 3044 7.798710 TTCATCCATTTTACCCCATTTAACA 57.201 32.000 0.00 0.00 0.00 2.41
2763 3045 7.798710 TCATCCATTTTACCCCATTTAACAA 57.201 32.000 0.00 0.00 0.00 2.83
2764 3046 8.207350 TCATCCATTTTACCCCATTTAACAAA 57.793 30.769 0.00 0.00 0.00 2.83
2765 3047 8.660435 TCATCCATTTTACCCCATTTAACAAAA 58.340 29.630 0.00 0.00 0.00 2.44
2766 3048 8.945057 CATCCATTTTACCCCATTTAACAAAAG 58.055 33.333 0.00 0.00 0.00 2.27
2767 3049 8.035448 TCCATTTTACCCCATTTAACAAAAGT 57.965 30.769 0.00 0.00 0.00 2.66
2768 3050 8.495260 TCCATTTTACCCCATTTAACAAAAGTT 58.505 29.630 0.00 0.00 0.00 2.66
2769 3051 8.779303 CCATTTTACCCCATTTAACAAAAGTTC 58.221 33.333 0.00 0.00 0.00 3.01
2770 3052 9.554395 CATTTTACCCCATTTAACAAAAGTTCT 57.446 29.630 0.00 0.00 0.00 3.01
2771 3053 8.950208 TTTTACCCCATTTAACAAAAGTTCTG 57.050 30.769 0.00 0.00 0.00 3.02
2772 3054 4.956085 ACCCCATTTAACAAAAGTTCTGC 58.044 39.130 0.00 0.00 0.00 4.26
2773 3055 4.202315 ACCCCATTTAACAAAAGTTCTGCC 60.202 41.667 0.00 0.00 0.00 4.85
2774 3056 4.202305 CCCCATTTAACAAAAGTTCTGCCA 60.202 41.667 0.00 0.00 0.00 4.92
2775 3057 4.749598 CCCATTTAACAAAAGTTCTGCCAC 59.250 41.667 0.00 0.00 0.00 5.01
2776 3058 4.444056 CCATTTAACAAAAGTTCTGCCACG 59.556 41.667 0.00 0.00 0.00 4.94
2777 3059 4.966965 TTTAACAAAAGTTCTGCCACGA 57.033 36.364 0.00 0.00 0.00 4.35
2778 3060 5.508200 TTTAACAAAAGTTCTGCCACGAT 57.492 34.783 0.00 0.00 0.00 3.73
2779 3061 5.508200 TTAACAAAAGTTCTGCCACGATT 57.492 34.783 0.00 0.00 0.00 3.34
2780 3062 4.385358 AACAAAAGTTCTGCCACGATTT 57.615 36.364 0.00 0.00 0.00 2.17
2781 3063 5.508200 AACAAAAGTTCTGCCACGATTTA 57.492 34.783 0.00 0.00 0.00 1.40
2782 3064 4.855531 ACAAAAGTTCTGCCACGATTTAC 58.144 39.130 0.00 0.00 0.00 2.01
2783 3065 4.226761 CAAAAGTTCTGCCACGATTTACC 58.773 43.478 0.00 0.00 0.00 2.85
2784 3066 2.109425 AGTTCTGCCACGATTTACCC 57.891 50.000 0.00 0.00 0.00 3.69
2785 3067 1.628846 AGTTCTGCCACGATTTACCCT 59.371 47.619 0.00 0.00 0.00 4.34
2786 3068 1.737793 GTTCTGCCACGATTTACCCTG 59.262 52.381 0.00 0.00 0.00 4.45
2787 3069 0.981183 TCTGCCACGATTTACCCTGT 59.019 50.000 0.00 0.00 0.00 4.00
2788 3070 1.349688 TCTGCCACGATTTACCCTGTT 59.650 47.619 0.00 0.00 0.00 3.16
2789 3071 2.159382 CTGCCACGATTTACCCTGTTT 58.841 47.619 0.00 0.00 0.00 2.83
2790 3072 3.008157 TCTGCCACGATTTACCCTGTTTA 59.992 43.478 0.00 0.00 0.00 2.01
2791 3073 3.752665 TGCCACGATTTACCCTGTTTAA 58.247 40.909 0.00 0.00 0.00 1.52
2792 3074 4.142790 TGCCACGATTTACCCTGTTTAAA 58.857 39.130 0.00 0.00 0.00 1.52
2793 3075 4.583489 TGCCACGATTTACCCTGTTTAAAA 59.417 37.500 0.00 0.00 0.00 1.52
2794 3076 5.244178 TGCCACGATTTACCCTGTTTAAAAT 59.756 36.000 0.00 0.00 0.00 1.82
2795 3077 6.160684 GCCACGATTTACCCTGTTTAAAATT 58.839 36.000 0.00 0.00 0.00 1.82
2796 3078 6.647481 GCCACGATTTACCCTGTTTAAAATTT 59.353 34.615 0.00 0.00 0.00 1.82
2797 3079 7.171848 GCCACGATTTACCCTGTTTAAAATTTT 59.828 33.333 8.75 8.75 0.00 1.82
2798 3080 9.694137 CCACGATTTACCCTGTTTAAAATTTTA 57.306 29.630 6.54 6.54 0.00 1.52
2807 3089 9.758651 ACCCTGTTTAAAATTTTATGAGTGTTC 57.241 29.630 11.33 0.00 0.00 3.18
2808 3090 9.981114 CCCTGTTTAAAATTTTATGAGTGTTCT 57.019 29.630 11.33 0.00 0.00 3.01
2816 3098 8.450578 AAATTTTATGAGTGTTCTGACAGACA 57.549 30.769 4.15 4.24 36.20 3.41
2817 3099 7.664082 ATTTTATGAGTGTTCTGACAGACAG 57.336 36.000 4.15 0.00 46.97 3.51
2818 3100 3.674528 ATGAGTGTTCTGACAGACAGG 57.325 47.619 4.15 0.00 45.76 4.00
2819 3101 2.388735 TGAGTGTTCTGACAGACAGGT 58.611 47.619 4.15 0.00 45.76 4.00
2820 3102 2.362397 TGAGTGTTCTGACAGACAGGTC 59.638 50.000 4.15 7.31 45.76 3.85
2821 3103 1.689273 AGTGTTCTGACAGACAGGTCC 59.311 52.381 4.15 0.00 45.76 4.46
2822 3104 1.048601 TGTTCTGACAGACAGGTCCC 58.951 55.000 4.15 0.00 45.76 4.46
2823 3105 1.048601 GTTCTGACAGACAGGTCCCA 58.951 55.000 4.15 0.00 45.76 4.37
2824 3106 1.416401 GTTCTGACAGACAGGTCCCAA 59.584 52.381 4.15 0.00 45.76 4.12
2825 3107 2.030027 TCTGACAGACAGGTCCCAAT 57.970 50.000 0.00 0.00 45.76 3.16
2826 3108 2.338809 TCTGACAGACAGGTCCCAATT 58.661 47.619 0.00 0.00 45.76 2.32
2827 3109 2.038952 TCTGACAGACAGGTCCCAATTG 59.961 50.000 0.00 0.00 45.76 2.32
2828 3110 1.774254 TGACAGACAGGTCCCAATTGT 59.226 47.619 4.43 0.00 36.97 2.71
2829 3111 2.154462 GACAGACAGGTCCCAATTGTG 58.846 52.381 4.43 0.00 0.00 3.33
2830 3112 1.774254 ACAGACAGGTCCCAATTGTGA 59.226 47.619 4.43 0.00 0.00 3.58
2831 3113 2.174639 ACAGACAGGTCCCAATTGTGAA 59.825 45.455 4.43 0.00 0.00 3.18
2832 3114 2.816087 CAGACAGGTCCCAATTGTGAAG 59.184 50.000 4.43 0.00 0.00 3.02
2833 3115 2.443255 AGACAGGTCCCAATTGTGAAGT 59.557 45.455 4.43 0.00 0.00 3.01
2834 3116 2.814336 GACAGGTCCCAATTGTGAAGTC 59.186 50.000 4.43 4.49 0.00 3.01
2835 3117 2.443255 ACAGGTCCCAATTGTGAAGTCT 59.557 45.455 4.43 0.00 0.00 3.24
2836 3118 3.650942 ACAGGTCCCAATTGTGAAGTCTA 59.349 43.478 4.43 0.00 0.00 2.59
2837 3119 4.256920 CAGGTCCCAATTGTGAAGTCTAG 58.743 47.826 4.43 0.00 0.00 2.43
2838 3120 3.010420 GGTCCCAATTGTGAAGTCTAGC 58.990 50.000 4.43 0.00 0.00 3.42
2839 3121 3.307762 GGTCCCAATTGTGAAGTCTAGCT 60.308 47.826 4.43 0.00 0.00 3.32
2840 3122 3.686726 GTCCCAATTGTGAAGTCTAGCTG 59.313 47.826 4.43 0.00 0.00 4.24
2841 3123 3.012518 CCCAATTGTGAAGTCTAGCTGG 58.987 50.000 4.43 0.00 0.00 4.85
2842 3124 2.421424 CCAATTGTGAAGTCTAGCTGGC 59.579 50.000 4.43 0.00 0.00 4.85
2843 3125 3.076621 CAATTGTGAAGTCTAGCTGGCA 58.923 45.455 0.00 0.00 0.00 4.92
2844 3126 3.641434 ATTGTGAAGTCTAGCTGGCAT 57.359 42.857 0.00 0.00 0.00 4.40
2845 3127 2.391616 TGTGAAGTCTAGCTGGCATG 57.608 50.000 0.00 0.00 0.00 4.06
2846 3128 1.012841 GTGAAGTCTAGCTGGCATGC 58.987 55.000 9.90 9.90 0.00 4.06
2847 3129 0.107508 TGAAGTCTAGCTGGCATGCC 60.108 55.000 30.54 30.54 0.00 4.40
2848 3130 0.107508 GAAGTCTAGCTGGCATGCCA 60.108 55.000 36.26 36.26 45.02 4.92
2849 3131 0.393537 AAGTCTAGCTGGCATGCCAC 60.394 55.000 35.59 28.55 41.89 5.01
2850 3132 1.078214 GTCTAGCTGGCATGCCACA 60.078 57.895 35.59 21.11 41.89 4.17
2851 3133 0.465097 GTCTAGCTGGCATGCCACAT 60.465 55.000 35.59 26.65 41.89 3.21
2852 3134 0.179037 TCTAGCTGGCATGCCACATC 60.179 55.000 35.59 24.75 41.89 3.06
2853 3135 1.504647 CTAGCTGGCATGCCACATCG 61.505 60.000 35.59 25.50 41.89 3.84
2854 3136 1.970352 TAGCTGGCATGCCACATCGA 61.970 55.000 35.59 19.34 41.89 3.59
2855 3137 2.191513 GCTGGCATGCCACATCGAT 61.192 57.895 35.59 0.00 41.89 3.59
2856 3138 1.652563 CTGGCATGCCACATCGATG 59.347 57.895 35.59 23.68 41.89 3.84
2857 3139 1.792118 CTGGCATGCCACATCGATGG 61.792 60.000 35.59 19.05 41.89 3.51
2858 3140 1.825191 GGCATGCCACATCGATGGT 60.825 57.895 32.08 11.93 42.28 3.55
2859 3141 1.386525 GGCATGCCACATCGATGGTT 61.387 55.000 32.08 6.52 42.28 3.67
2860 3142 0.457035 GCATGCCACATCGATGGTTT 59.543 50.000 28.09 5.74 42.28 3.27
2861 3143 1.135024 GCATGCCACATCGATGGTTTT 60.135 47.619 28.09 5.36 42.28 2.43
2862 3144 2.674747 GCATGCCACATCGATGGTTTTT 60.675 45.455 28.09 4.96 42.28 1.94
2885 3167 7.730364 TTTCTTGCTTATTTTTCTCTCTCGT 57.270 32.000 0.00 0.00 0.00 4.18
2886 3168 6.712241 TCTTGCTTATTTTTCTCTCTCGTG 57.288 37.500 0.00 0.00 0.00 4.35
2887 3169 6.455647 TCTTGCTTATTTTTCTCTCTCGTGA 58.544 36.000 0.00 0.00 0.00 4.35
2888 3170 6.929049 TCTTGCTTATTTTTCTCTCTCGTGAA 59.071 34.615 0.00 0.00 0.00 3.18
2889 3171 6.467723 TGCTTATTTTTCTCTCTCGTGAAC 57.532 37.500 0.00 0.00 0.00 3.18
2890 3172 5.408604 TGCTTATTTTTCTCTCTCGTGAACC 59.591 40.000 0.00 0.00 0.00 3.62
2891 3173 5.408604 GCTTATTTTTCTCTCTCGTGAACCA 59.591 40.000 0.00 0.00 0.00 3.67
2892 3174 6.401581 GCTTATTTTTCTCTCTCGTGAACCAG 60.402 42.308 0.00 0.00 0.00 4.00
2893 3175 4.402056 TTTTTCTCTCTCGTGAACCAGT 57.598 40.909 0.00 0.00 0.00 4.00
2894 3176 3.644884 TTTCTCTCTCGTGAACCAGTC 57.355 47.619 0.00 0.00 0.00 3.51
2895 3177 1.535833 TCTCTCTCGTGAACCAGTCC 58.464 55.000 0.00 0.00 0.00 3.85
2896 3178 1.074084 TCTCTCTCGTGAACCAGTCCT 59.926 52.381 0.00 0.00 0.00 3.85
2897 3179 1.470890 CTCTCTCGTGAACCAGTCCTC 59.529 57.143 0.00 0.00 0.00 3.71
2898 3180 1.202891 TCTCTCGTGAACCAGTCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
2899 3181 0.959553 TCTCGTGAACCAGTCCTCAC 59.040 55.000 0.00 0.00 38.87 3.51
2901 3183 4.675404 GTGAACCAGTCCTCACGG 57.325 61.111 0.00 0.00 33.19 4.94
2902 3184 1.668151 GTGAACCAGTCCTCACGGC 60.668 63.158 0.00 0.00 33.19 5.68
2903 3185 1.837051 TGAACCAGTCCTCACGGCT 60.837 57.895 0.00 0.00 0.00 5.52
2904 3186 1.371558 GAACCAGTCCTCACGGCTT 59.628 57.895 0.00 0.00 0.00 4.35
2905 3187 0.670854 GAACCAGTCCTCACGGCTTC 60.671 60.000 0.00 0.00 0.00 3.86
2906 3188 1.122019 AACCAGTCCTCACGGCTTCT 61.122 55.000 0.00 0.00 0.00 2.85
2907 3189 1.216710 CCAGTCCTCACGGCTTCTC 59.783 63.158 0.00 0.00 0.00 2.87
2908 3190 1.216710 CAGTCCTCACGGCTTCTCC 59.783 63.158 0.00 0.00 0.00 3.71
2909 3191 1.985116 AGTCCTCACGGCTTCTCCC 60.985 63.158 0.00 0.00 0.00 4.30
2917 3199 4.144703 GGCTTCTCCCGACCGGAC 62.145 72.222 9.46 0.00 34.86 4.79
2918 3200 4.144703 GCTTCTCCCGACCGGACC 62.145 72.222 9.46 0.00 34.86 4.46
2919 3201 3.823330 CTTCTCCCGACCGGACCG 61.823 72.222 9.46 6.99 34.86 4.79
2935 3217 4.530857 CGGCCCGATGGAGGTCAC 62.531 72.222 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 154 8.897809 CGCAGAAAAATGTAAAAATTACGAGAA 58.102 29.630 0.00 0.00 0.00 2.87
115 170 4.000988 GGTCTTCTCCGCAGAAAAATGTA 58.999 43.478 0.00 0.00 38.23 2.29
117 172 2.813754 TGGTCTTCTCCGCAGAAAAATG 59.186 45.455 0.00 0.00 38.23 2.32
147 202 5.753438 GTCATCGTCACCAAGATGCTATTAA 59.247 40.000 0.97 0.00 42.76 1.40
158 213 4.929211 CAGTTAGATTGTCATCGTCACCAA 59.071 41.667 0.00 0.00 34.17 3.67
161 352 4.744570 TCCAGTTAGATTGTCATCGTCAC 58.255 43.478 0.00 0.00 34.17 3.67
165 356 6.908870 TTGAATCCAGTTAGATTGTCATCG 57.091 37.500 0.00 0.00 36.60 3.84
186 377 3.585748 TTCTTCTTGCGTCTCGTTTTG 57.414 42.857 0.00 0.00 0.00 2.44
187 378 4.813296 ATTTCTTCTTGCGTCTCGTTTT 57.187 36.364 0.00 0.00 0.00 2.43
188 379 4.813296 AATTTCTTCTTGCGTCTCGTTT 57.187 36.364 0.00 0.00 0.00 3.60
190 381 3.807622 TCAAATTTCTTCTTGCGTCTCGT 59.192 39.130 0.00 0.00 0.00 4.18
191 382 4.389664 TCAAATTTCTTCTTGCGTCTCG 57.610 40.909 0.00 0.00 0.00 4.04
192 383 6.142958 CCTTTTCAAATTTCTTCTTGCGTCTC 59.857 38.462 0.00 0.00 0.00 3.36
193 384 5.979517 CCTTTTCAAATTTCTTCTTGCGTCT 59.020 36.000 0.00 0.00 0.00 4.18
194 385 5.977129 TCCTTTTCAAATTTCTTCTTGCGTC 59.023 36.000 0.00 0.00 0.00 5.19
195 386 5.901552 TCCTTTTCAAATTTCTTCTTGCGT 58.098 33.333 0.00 0.00 0.00 5.24
196 387 6.074142 CCTTCCTTTTCAAATTTCTTCTTGCG 60.074 38.462 0.00 0.00 0.00 4.85
197 388 6.293081 GCCTTCCTTTTCAAATTTCTTCTTGC 60.293 38.462 0.00 0.00 0.00 4.01
198 389 6.762661 TGCCTTCCTTTTCAAATTTCTTCTTG 59.237 34.615 0.00 0.00 0.00 3.02
208 399 1.760029 GTGGGTGCCTTCCTTTTCAAA 59.240 47.619 0.00 0.00 0.00 2.69
209 400 1.063266 AGTGGGTGCCTTCCTTTTCAA 60.063 47.619 0.00 0.00 0.00 2.69
210 401 0.555769 AGTGGGTGCCTTCCTTTTCA 59.444 50.000 0.00 0.00 0.00 2.69
231 445 4.538746 AGGTTCTTGACTTGTACTAGCC 57.461 45.455 4.10 0.00 0.00 3.93
254 468 5.567423 GCATGCTTAATCTTGTTTCAGGGTT 60.567 40.000 11.37 0.00 0.00 4.11
257 471 5.063180 TGCATGCTTAATCTTGTTTCAGG 57.937 39.130 20.33 0.00 0.00 3.86
292 506 3.126831 CTCGGGATTATTGCTGTGACTC 58.873 50.000 0.00 0.00 0.00 3.36
310 524 2.259618 CTGGTAACGTGGACATTCTCG 58.740 52.381 0.00 0.00 42.51 4.04
350 564 4.441792 GTTTTGGTTGGATTGCAAGTCTT 58.558 39.130 4.94 0.00 0.00 3.01
462 689 1.796459 CGGAACCAACCGTAGTTTCTG 59.204 52.381 0.00 0.00 46.70 3.02
568 796 6.464222 ACGAGACAATTTCAGATCAGGTTTA 58.536 36.000 0.00 0.00 0.00 2.01
583 823 8.547967 AAAACATGACATTACTACGAGACAAT 57.452 30.769 0.00 0.00 0.00 2.71
584 824 7.956420 AAAACATGACATTACTACGAGACAA 57.044 32.000 0.00 0.00 0.00 3.18
608 848 1.953686 GGGCACAAACTTGAAGCAGTA 59.046 47.619 11.58 0.00 35.55 2.74
798 1042 2.281484 GGGAACGTGCTTGCCTCA 60.281 61.111 0.00 0.00 37.39 3.86
824 1068 4.379813 GGGTGTAAATGCAGTGATCAGTTG 60.380 45.833 0.00 1.40 0.00 3.16
859 1117 5.181811 CCATGCAAAGTTACATCAAGTCAGA 59.818 40.000 0.00 0.00 0.00 3.27
871 1129 1.133325 ACCCACCACCATGCAAAGTTA 60.133 47.619 0.00 0.00 0.00 2.24
1116 1374 0.612732 TGGTATCCTGTTCGACCGGT 60.613 55.000 6.92 6.92 34.49 5.28
1163 1421 0.912006 AACTTCTGCCTCCTCCTCCC 60.912 60.000 0.00 0.00 0.00 4.30
1225 1483 4.794439 CTCGCGGTCGACCATGCA 62.794 66.667 32.80 17.56 40.21 3.96
1243 1501 0.323629 TCAACCCGGGACTCATTGTC 59.676 55.000 32.02 0.00 44.63 3.18
1311 1569 1.787847 GACTCCAACGACGGCAATG 59.212 57.895 0.00 0.00 0.00 2.82
1337 1595 2.359975 GGTTCCCCTCGTTGCCAG 60.360 66.667 0.00 0.00 0.00 4.85
1411 1669 2.467826 GCATCAGCTTCGCCCTCAC 61.468 63.158 0.00 0.00 37.91 3.51
1459 1717 3.184683 CTTCGCCGTCAGCTCAGC 61.185 66.667 0.00 0.00 40.39 4.26
1460 1718 2.507992 CCTTCGCCGTCAGCTCAG 60.508 66.667 0.00 0.00 40.39 3.35
1461 1719 2.989253 TCCTTCGCCGTCAGCTCA 60.989 61.111 0.00 0.00 40.39 4.26
1678 1936 3.532155 GCGCTCCGACTCCCTCAT 61.532 66.667 0.00 0.00 0.00 2.90
2008 2278 1.006805 GAGAGGCACCCGATCGATG 60.007 63.158 18.66 15.39 0.00 3.84
2151 2427 3.198635 TCCTCTTGGTAAATCAGCCTCTG 59.801 47.826 0.00 0.00 34.23 3.35
2155 2431 2.505819 TCCTCCTCTTGGTAAATCAGCC 59.494 50.000 0.00 0.00 34.23 4.85
2167 2443 2.040178 ACAGTGTTCGTTCCTCCTCTT 58.960 47.619 0.00 0.00 0.00 2.85
2198 2474 3.005554 GGTCTGGTGTTCATCATCACTG 58.994 50.000 0.00 0.00 33.20 3.66
2218 2494 5.590259 AGTGCAGTAATTTAGCAGGTAATGG 59.410 40.000 0.00 0.00 39.21 3.16
2253 2529 1.152631 TCGGGGCATCGGAGACATA 60.153 57.895 0.00 0.00 42.51 2.29
2287 2563 2.096218 GTGTCATTTGACCGAGACTTGC 60.096 50.000 8.16 0.00 44.15 4.01
2294 2570 7.254286 CGAATATATGTTGTGTCATTTGACCGA 60.254 37.037 8.16 0.00 44.15 4.69
2301 2577 8.978564 TTTTTGCGAATATATGTTGTGTCATT 57.021 26.923 0.00 0.00 0.00 2.57
2360 2639 9.810545 AAGATCCGTGTAAAATTTTCTTTTGAA 57.189 25.926 6.72 0.00 36.52 2.69
2399 2678 9.630098 AATGAAGTTGTAGATGCTAAATTTGTG 57.370 29.630 0.00 0.00 0.00 3.33
2431 2713 4.096984 GGTTGCTAAATCTCAGTCCATTGG 59.903 45.833 0.00 0.00 0.00 3.16
2439 2721 2.403252 ACCGGGTTGCTAAATCTCAG 57.597 50.000 6.32 0.00 0.00 3.35
2486 2768 0.388659 GTCCAGCATGTTTGTGCCAA 59.611 50.000 0.00 0.00 46.19 4.52
2517 2799 4.204012 CAGTCCCAACAACCTCTACAAAA 58.796 43.478 0.00 0.00 0.00 2.44
2543 2825 2.159572 AGTTTGACGACACTGTGTTTGC 60.160 45.455 15.54 7.76 0.00 3.68
2551 2833 4.693566 TGAAGTTTGAAGTTTGACGACACT 59.306 37.500 0.00 0.00 0.00 3.55
2606 2888 7.379529 GTCAAAACTGACACCATACATTTCAAG 59.620 37.037 0.43 0.00 38.59 3.02
2655 2937 9.872757 GAATTCACTCGTATTTTTAGTGTTTGA 57.127 29.630 0.00 0.00 41.12 2.69
2656 2938 9.113876 GGAATTCACTCGTATTTTTAGTGTTTG 57.886 33.333 7.93 0.00 41.12 2.93
2657 2939 8.013378 CGGAATTCACTCGTATTTTTAGTGTTT 58.987 33.333 7.93 0.00 41.12 2.83
2658 2940 7.360607 CCGGAATTCACTCGTATTTTTAGTGTT 60.361 37.037 7.93 0.00 41.12 3.32
2659 2941 6.091713 CCGGAATTCACTCGTATTTTTAGTGT 59.908 38.462 7.93 0.00 41.12 3.55
2660 2942 6.091713 ACCGGAATTCACTCGTATTTTTAGTG 59.908 38.462 9.46 0.00 41.58 2.74
2661 2943 6.168389 ACCGGAATTCACTCGTATTTTTAGT 58.832 36.000 9.46 0.00 0.00 2.24
2662 2944 6.657836 ACCGGAATTCACTCGTATTTTTAG 57.342 37.500 9.46 0.00 0.00 1.85
2663 2945 7.437793 AAACCGGAATTCACTCGTATTTTTA 57.562 32.000 9.46 0.00 0.00 1.52
2664 2946 5.952526 AACCGGAATTCACTCGTATTTTT 57.047 34.783 9.46 0.00 0.00 1.94
2665 2947 5.952526 AAACCGGAATTCACTCGTATTTT 57.047 34.783 9.46 0.00 0.00 1.82
2666 2948 5.952526 AAAACCGGAATTCACTCGTATTT 57.047 34.783 9.46 2.77 0.00 1.40
2667 2949 5.952526 AAAAACCGGAATTCACTCGTATT 57.047 34.783 9.46 0.00 0.00 1.89
2668 2950 5.352293 GGTAAAAACCGGAATTCACTCGTAT 59.648 40.000 9.46 0.00 0.00 3.06
2669 2951 4.690280 GGTAAAAACCGGAATTCACTCGTA 59.310 41.667 9.46 0.00 0.00 3.43
2670 2952 3.499537 GGTAAAAACCGGAATTCACTCGT 59.500 43.478 9.46 0.00 0.00 4.18
2671 2953 3.120095 GGGTAAAAACCGGAATTCACTCG 60.120 47.826 9.46 1.63 0.00 4.18
2672 2954 3.192001 GGGGTAAAAACCGGAATTCACTC 59.808 47.826 9.46 0.00 0.00 3.51
2673 2955 3.159472 GGGGTAAAAACCGGAATTCACT 58.841 45.455 9.46 0.00 0.00 3.41
2674 2956 2.231964 GGGGGTAAAAACCGGAATTCAC 59.768 50.000 9.46 0.00 0.00 3.18
2675 2957 2.110365 AGGGGGTAAAAACCGGAATTCA 59.890 45.455 9.46 0.00 0.00 2.57
2676 2958 2.811410 AGGGGGTAAAAACCGGAATTC 58.189 47.619 9.46 0.00 0.00 2.17
2677 2959 4.613265 ATAGGGGGTAAAAACCGGAATT 57.387 40.909 9.46 0.00 0.00 2.17
2678 2960 4.613265 AATAGGGGGTAAAAACCGGAAT 57.387 40.909 9.46 0.00 0.00 3.01
2679 2961 4.401048 AAATAGGGGGTAAAAACCGGAA 57.599 40.909 9.46 0.00 0.00 4.30
2680 2962 4.087907 CAAAATAGGGGGTAAAAACCGGA 58.912 43.478 9.46 0.00 0.00 5.14
2681 2963 4.082081 GTCAAAATAGGGGGTAAAAACCGG 60.082 45.833 0.00 0.00 0.00 5.28
2682 2964 4.523558 TGTCAAAATAGGGGGTAAAAACCG 59.476 41.667 0.00 0.00 0.00 4.44
2683 2965 6.614694 ATGTCAAAATAGGGGGTAAAAACC 57.385 37.500 0.00 0.00 0.00 3.27
2684 2966 8.911918 AAAATGTCAAAATAGGGGGTAAAAAC 57.088 30.769 0.00 0.00 0.00 2.43
2685 2967 9.343539 CAAAAATGTCAAAATAGGGGGTAAAAA 57.656 29.630 0.00 0.00 0.00 1.94
2686 2968 8.714906 TCAAAAATGTCAAAATAGGGGGTAAAA 58.285 29.630 0.00 0.00 0.00 1.52
2687 2969 8.151596 GTCAAAAATGTCAAAATAGGGGGTAAA 58.848 33.333 0.00 0.00 0.00 2.01
2688 2970 7.290248 TGTCAAAAATGTCAAAATAGGGGGTAA 59.710 33.333 0.00 0.00 0.00 2.85
2689 2971 6.782988 TGTCAAAAATGTCAAAATAGGGGGTA 59.217 34.615 0.00 0.00 0.00 3.69
2690 2972 5.604650 TGTCAAAAATGTCAAAATAGGGGGT 59.395 36.000 0.00 0.00 0.00 4.95
2691 2973 5.931724 GTGTCAAAAATGTCAAAATAGGGGG 59.068 40.000 0.00 0.00 0.00 5.40
2692 2974 6.758254 AGTGTCAAAAATGTCAAAATAGGGG 58.242 36.000 0.00 0.00 0.00 4.79
2693 2975 8.576442 AGTAGTGTCAAAAATGTCAAAATAGGG 58.424 33.333 0.00 0.00 0.00 3.53
2694 2976 9.965824 AAGTAGTGTCAAAAATGTCAAAATAGG 57.034 29.630 0.00 0.00 0.00 2.57
2697 2979 9.744468 GGTAAGTAGTGTCAAAAATGTCAAAAT 57.256 29.630 0.00 0.00 0.00 1.82
2698 2980 8.192110 GGGTAAGTAGTGTCAAAAATGTCAAAA 58.808 33.333 0.00 0.00 0.00 2.44
2699 2981 7.201839 GGGGTAAGTAGTGTCAAAAATGTCAAA 60.202 37.037 0.00 0.00 0.00 2.69
2700 2982 6.263617 GGGGTAAGTAGTGTCAAAAATGTCAA 59.736 38.462 0.00 0.00 0.00 3.18
2701 2983 5.766174 GGGGTAAGTAGTGTCAAAAATGTCA 59.234 40.000 0.00 0.00 0.00 3.58
2702 2984 5.766174 TGGGGTAAGTAGTGTCAAAAATGTC 59.234 40.000 0.00 0.00 0.00 3.06
2703 2985 5.697067 TGGGGTAAGTAGTGTCAAAAATGT 58.303 37.500 0.00 0.00 0.00 2.71
2704 2986 6.834168 ATGGGGTAAGTAGTGTCAAAAATG 57.166 37.500 0.00 0.00 0.00 2.32
2705 2987 7.849322 AAATGGGGTAAGTAGTGTCAAAAAT 57.151 32.000 0.00 0.00 0.00 1.82
2706 2988 7.040271 GCTAAATGGGGTAAGTAGTGTCAAAAA 60.040 37.037 0.00 0.00 0.00 1.94
2707 2989 6.431852 GCTAAATGGGGTAAGTAGTGTCAAAA 59.568 38.462 0.00 0.00 0.00 2.44
2708 2990 5.941647 GCTAAATGGGGTAAGTAGTGTCAAA 59.058 40.000 0.00 0.00 0.00 2.69
2709 2991 5.493809 GCTAAATGGGGTAAGTAGTGTCAA 58.506 41.667 0.00 0.00 0.00 3.18
2710 2992 4.382254 CGCTAAATGGGGTAAGTAGTGTCA 60.382 45.833 0.00 0.00 0.00 3.58
2711 2993 4.117685 CGCTAAATGGGGTAAGTAGTGTC 58.882 47.826 0.00 0.00 0.00 3.67
2712 2994 3.770933 TCGCTAAATGGGGTAAGTAGTGT 59.229 43.478 0.00 0.00 0.00 3.55
2713 2995 4.395959 TCGCTAAATGGGGTAAGTAGTG 57.604 45.455 0.00 0.00 0.00 2.74
2714 2996 5.425196 TTTCGCTAAATGGGGTAAGTAGT 57.575 39.130 0.00 0.00 0.00 2.73
2715 2997 6.937436 AATTTCGCTAAATGGGGTAAGTAG 57.063 37.500 0.00 0.00 35.46 2.57
2716 2998 6.885376 TGAAATTTCGCTAAATGGGGTAAGTA 59.115 34.615 13.34 0.00 35.46 2.24
2717 2999 5.712917 TGAAATTTCGCTAAATGGGGTAAGT 59.287 36.000 13.34 0.00 35.46 2.24
2718 3000 6.202516 TGAAATTTCGCTAAATGGGGTAAG 57.797 37.500 13.34 0.00 35.46 2.34
2719 3001 6.183360 GGATGAAATTTCGCTAAATGGGGTAA 60.183 38.462 13.34 0.00 35.46 2.85
2720 3002 5.300792 GGATGAAATTTCGCTAAATGGGGTA 59.699 40.000 13.34 0.00 35.46 3.69
2721 3003 4.099419 GGATGAAATTTCGCTAAATGGGGT 59.901 41.667 13.34 0.00 35.46 4.95
2722 3004 4.099266 TGGATGAAATTTCGCTAAATGGGG 59.901 41.667 13.34 0.00 35.46 4.96
2723 3005 5.261209 TGGATGAAATTTCGCTAAATGGG 57.739 39.130 13.34 0.00 35.46 4.00
2724 3006 7.775397 AAATGGATGAAATTTCGCTAAATGG 57.225 32.000 13.34 0.00 35.46 3.16
2726 3008 9.313118 GGTAAAATGGATGAAATTTCGCTAAAT 57.687 29.630 13.34 0.89 36.87 1.40
2727 3009 7.762159 GGGTAAAATGGATGAAATTTCGCTAAA 59.238 33.333 13.34 0.00 0.00 1.85
2728 3010 7.262048 GGGTAAAATGGATGAAATTTCGCTAA 58.738 34.615 13.34 0.33 0.00 3.09
2729 3011 6.183360 GGGGTAAAATGGATGAAATTTCGCTA 60.183 38.462 13.34 6.55 0.00 4.26
2730 3012 5.395214 GGGGTAAAATGGATGAAATTTCGCT 60.395 40.000 13.34 3.38 0.00 4.93
2731 3013 4.808895 GGGGTAAAATGGATGAAATTTCGC 59.191 41.667 13.34 7.84 0.00 4.70
2732 3014 5.971763 TGGGGTAAAATGGATGAAATTTCG 58.028 37.500 13.34 0.00 0.00 3.46
2733 3015 8.806429 AAATGGGGTAAAATGGATGAAATTTC 57.194 30.769 11.41 11.41 0.00 2.17
2735 3017 9.679661 GTTAAATGGGGTAAAATGGATGAAATT 57.320 29.630 0.00 0.00 0.00 1.82
2736 3018 8.830741 TGTTAAATGGGGTAAAATGGATGAAAT 58.169 29.630 0.00 0.00 0.00 2.17
2737 3019 8.207350 TGTTAAATGGGGTAAAATGGATGAAA 57.793 30.769 0.00 0.00 0.00 2.69
2738 3020 7.798710 TGTTAAATGGGGTAAAATGGATGAA 57.201 32.000 0.00 0.00 0.00 2.57
2739 3021 7.798710 TTGTTAAATGGGGTAAAATGGATGA 57.201 32.000 0.00 0.00 0.00 2.92
2740 3022 8.854614 TTTTGTTAAATGGGGTAAAATGGATG 57.145 30.769 0.00 0.00 0.00 3.51
2741 3023 8.664992 ACTTTTGTTAAATGGGGTAAAATGGAT 58.335 29.630 0.00 0.00 0.00 3.41
2742 3024 8.035448 ACTTTTGTTAAATGGGGTAAAATGGA 57.965 30.769 0.00 0.00 0.00 3.41
2743 3025 8.684386 AACTTTTGTTAAATGGGGTAAAATGG 57.316 30.769 0.00 0.00 41.50 3.16
2744 3026 9.554395 AGAACTTTTGTTAAATGGGGTAAAATG 57.446 29.630 0.00 0.00 43.66 2.32
2745 3027 9.554395 CAGAACTTTTGTTAAATGGGGTAAAAT 57.446 29.630 0.00 0.00 43.66 1.82
2746 3028 7.496263 GCAGAACTTTTGTTAAATGGGGTAAAA 59.504 33.333 0.00 0.00 43.66 1.52
2747 3029 6.987404 GCAGAACTTTTGTTAAATGGGGTAAA 59.013 34.615 0.00 0.00 43.66 2.01
2748 3030 6.463190 GGCAGAACTTTTGTTAAATGGGGTAA 60.463 38.462 0.00 0.00 43.66 2.85
2749 3031 5.011227 GGCAGAACTTTTGTTAAATGGGGTA 59.989 40.000 0.00 0.00 43.66 3.69
2750 3032 4.202315 GGCAGAACTTTTGTTAAATGGGGT 60.202 41.667 0.00 0.00 43.66 4.95
2751 3033 4.202305 TGGCAGAACTTTTGTTAAATGGGG 60.202 41.667 0.00 0.00 43.66 4.96
2752 3034 4.749598 GTGGCAGAACTTTTGTTAAATGGG 59.250 41.667 0.00 0.00 43.66 4.00
2753 3035 4.444056 CGTGGCAGAACTTTTGTTAAATGG 59.556 41.667 0.00 0.00 43.66 3.16
2754 3036 5.277825 TCGTGGCAGAACTTTTGTTAAATG 58.722 37.500 0.00 0.00 43.66 2.32
2755 3037 5.508200 TCGTGGCAGAACTTTTGTTAAAT 57.492 34.783 0.00 0.00 43.66 1.40
2756 3038 4.966965 TCGTGGCAGAACTTTTGTTAAA 57.033 36.364 0.00 0.00 43.66 1.52
2757 3039 5.508200 AATCGTGGCAGAACTTTTGTTAA 57.492 34.783 0.00 0.00 43.66 2.01
2758 3040 5.508200 AAATCGTGGCAGAACTTTTGTTA 57.492 34.783 0.00 0.00 43.66 2.41
2759 3041 4.385358 AAATCGTGGCAGAACTTTTGTT 57.615 36.364 0.00 0.00 46.75 2.83
2760 3042 4.261447 GGTAAATCGTGGCAGAACTTTTGT 60.261 41.667 0.00 0.00 0.00 2.83
2761 3043 4.226761 GGTAAATCGTGGCAGAACTTTTG 58.773 43.478 0.00 0.00 0.00 2.44
2762 3044 3.254903 GGGTAAATCGTGGCAGAACTTTT 59.745 43.478 0.00 0.00 0.00 2.27
2763 3045 2.817844 GGGTAAATCGTGGCAGAACTTT 59.182 45.455 0.00 0.00 0.00 2.66
2764 3046 2.039879 AGGGTAAATCGTGGCAGAACTT 59.960 45.455 0.00 0.00 0.00 2.66
2765 3047 1.628846 AGGGTAAATCGTGGCAGAACT 59.371 47.619 0.00 0.00 0.00 3.01
2766 3048 1.737793 CAGGGTAAATCGTGGCAGAAC 59.262 52.381 0.00 0.00 0.00 3.01
2767 3049 1.349688 ACAGGGTAAATCGTGGCAGAA 59.650 47.619 0.00 0.00 0.00 3.02
2768 3050 0.981183 ACAGGGTAAATCGTGGCAGA 59.019 50.000 0.00 0.00 0.00 4.26
2769 3051 1.821216 AACAGGGTAAATCGTGGCAG 58.179 50.000 0.00 0.00 0.00 4.85
2770 3052 2.279935 AAACAGGGTAAATCGTGGCA 57.720 45.000 0.00 0.00 0.00 4.92
2771 3053 4.769859 TTTAAACAGGGTAAATCGTGGC 57.230 40.909 0.00 0.00 0.00 5.01
2772 3054 8.596271 AAAATTTTAAACAGGGTAAATCGTGG 57.404 30.769 0.37 0.00 0.00 4.94
2781 3063 9.758651 GAACACTCATAAAATTTTAAACAGGGT 57.241 29.630 14.35 13.43 0.00 4.34
2782 3064 9.981114 AGAACACTCATAAAATTTTAAACAGGG 57.019 29.630 14.35 12.88 0.00 4.45
2790 3072 8.902806 TGTCTGTCAGAACACTCATAAAATTTT 58.097 29.630 3.51 8.75 0.00 1.82
2791 3073 8.450578 TGTCTGTCAGAACACTCATAAAATTT 57.549 30.769 3.51 0.00 0.00 1.82
2792 3074 7.173907 CCTGTCTGTCAGAACACTCATAAAATT 59.826 37.037 3.51 0.00 46.27 1.82
2793 3075 6.652481 CCTGTCTGTCAGAACACTCATAAAAT 59.348 38.462 3.51 0.00 46.27 1.82
2794 3076 5.991606 CCTGTCTGTCAGAACACTCATAAAA 59.008 40.000 3.51 0.00 46.27 1.52
2795 3077 5.070446 ACCTGTCTGTCAGAACACTCATAAA 59.930 40.000 3.51 0.00 46.27 1.40
2796 3078 4.588951 ACCTGTCTGTCAGAACACTCATAA 59.411 41.667 3.51 0.00 46.27 1.90
2797 3079 4.152647 ACCTGTCTGTCAGAACACTCATA 58.847 43.478 3.51 0.00 46.27 2.15
2798 3080 2.968574 ACCTGTCTGTCAGAACACTCAT 59.031 45.455 3.51 0.00 46.27 2.90
2799 3081 2.362397 GACCTGTCTGTCAGAACACTCA 59.638 50.000 3.51 0.00 46.27 3.41
2800 3082 2.288518 GGACCTGTCTGTCAGAACACTC 60.289 54.545 3.51 0.00 46.27 3.51
2801 3083 1.689273 GGACCTGTCTGTCAGAACACT 59.311 52.381 3.51 0.00 46.27 3.55
2802 3084 1.270358 GGGACCTGTCTGTCAGAACAC 60.270 57.143 3.51 0.00 46.27 3.32
2803 3085 1.048601 GGGACCTGTCTGTCAGAACA 58.951 55.000 3.51 4.71 46.27 3.18
2804 3086 1.048601 TGGGACCTGTCTGTCAGAAC 58.951 55.000 3.51 0.00 46.27 3.01
2805 3087 1.801242 TTGGGACCTGTCTGTCAGAA 58.199 50.000 3.51 0.00 46.27 3.02
2806 3088 2.030027 ATTGGGACCTGTCTGTCAGA 57.970 50.000 0.00 0.00 46.27 3.27
2807 3089 2.224621 ACAATTGGGACCTGTCTGTCAG 60.225 50.000 10.83 0.00 43.27 3.51
2808 3090 1.774254 ACAATTGGGACCTGTCTGTCA 59.226 47.619 10.83 0.00 36.97 3.58
2809 3091 2.154462 CACAATTGGGACCTGTCTGTC 58.846 52.381 10.83 0.00 34.42 3.51
2810 3092 1.774254 TCACAATTGGGACCTGTCTGT 59.226 47.619 6.21 0.00 0.00 3.41
2811 3093 2.566833 TCACAATTGGGACCTGTCTG 57.433 50.000 6.21 0.00 0.00 3.51
2812 3094 2.443255 ACTTCACAATTGGGACCTGTCT 59.557 45.455 10.68 0.00 0.00 3.41
2813 3095 2.814336 GACTTCACAATTGGGACCTGTC 59.186 50.000 10.68 14.61 0.00 3.51
2814 3096 2.443255 AGACTTCACAATTGGGACCTGT 59.557 45.455 10.68 9.76 0.00 4.00
2815 3097 3.146104 AGACTTCACAATTGGGACCTG 57.854 47.619 10.68 6.45 0.00 4.00
2816 3098 3.307762 GCTAGACTTCACAATTGGGACCT 60.308 47.826 10.68 10.40 0.00 3.85
2817 3099 3.010420 GCTAGACTTCACAATTGGGACC 58.990 50.000 10.68 2.84 0.00 4.46
2818 3100 3.686726 CAGCTAGACTTCACAATTGGGAC 59.313 47.826 10.68 0.00 0.00 4.46
2819 3101 3.307691 CCAGCTAGACTTCACAATTGGGA 60.308 47.826 6.21 6.21 0.00 4.37
2820 3102 3.012518 CCAGCTAGACTTCACAATTGGG 58.987 50.000 10.83 5.72 0.00 4.12
2821 3103 2.421424 GCCAGCTAGACTTCACAATTGG 59.579 50.000 10.83 0.00 0.00 3.16
2822 3104 3.076621 TGCCAGCTAGACTTCACAATTG 58.923 45.455 3.24 3.24 0.00 2.32
2823 3105 3.423539 TGCCAGCTAGACTTCACAATT 57.576 42.857 0.00 0.00 0.00 2.32
2824 3106 3.276857 CATGCCAGCTAGACTTCACAAT 58.723 45.455 0.00 0.00 0.00 2.71
2825 3107 2.703416 CATGCCAGCTAGACTTCACAA 58.297 47.619 0.00 0.00 0.00 3.33
2826 3108 1.676916 GCATGCCAGCTAGACTTCACA 60.677 52.381 6.36 0.00 0.00 3.58
2827 3109 1.012841 GCATGCCAGCTAGACTTCAC 58.987 55.000 6.36 0.00 0.00 3.18
2828 3110 0.107508 GGCATGCCAGCTAGACTTCA 60.108 55.000 32.08 0.00 35.81 3.02
2829 3111 0.107508 TGGCATGCCAGCTAGACTTC 60.108 55.000 35.59 5.21 41.89 3.01
2830 3112 1.993653 TGGCATGCCAGCTAGACTT 59.006 52.632 35.59 0.00 41.89 3.01
2831 3113 3.731547 TGGCATGCCAGCTAGACT 58.268 55.556 35.59 0.00 41.89 3.24
2839 3121 1.824760 CCATCGATGTGGCATGCCA 60.825 57.895 35.59 35.59 45.02 4.92
2840 3122 1.386525 AACCATCGATGTGGCATGCC 61.387 55.000 30.54 30.54 43.27 4.40
2841 3123 0.457035 AAACCATCGATGTGGCATGC 59.543 50.000 23.27 9.90 43.27 4.06
2842 3124 2.945447 AAAACCATCGATGTGGCATG 57.055 45.000 23.27 9.79 43.27 4.06
2859 3141 8.621286 ACGAGAGAGAAAAATAAGCAAGAAAAA 58.379 29.630 0.00 0.00 0.00 1.94
2860 3142 8.070171 CACGAGAGAGAAAAATAAGCAAGAAAA 58.930 33.333 0.00 0.00 0.00 2.29
2861 3143 7.441157 TCACGAGAGAGAAAAATAAGCAAGAAA 59.559 33.333 0.00 0.00 0.00 2.52
2862 3144 6.929049 TCACGAGAGAGAAAAATAAGCAAGAA 59.071 34.615 0.00 0.00 0.00 2.52
2863 3145 6.455647 TCACGAGAGAGAAAAATAAGCAAGA 58.544 36.000 0.00 0.00 0.00 3.02
2864 3146 6.712241 TCACGAGAGAGAAAAATAAGCAAG 57.288 37.500 0.00 0.00 0.00 4.01
2865 3147 6.073222 GGTTCACGAGAGAGAAAAATAAGCAA 60.073 38.462 0.00 0.00 42.17 3.91
2866 3148 5.408604 GGTTCACGAGAGAGAAAAATAAGCA 59.591 40.000 0.00 0.00 42.17 3.91
2867 3149 5.408604 TGGTTCACGAGAGAGAAAAATAAGC 59.591 40.000 0.00 0.00 42.17 3.09
2868 3150 6.647067 ACTGGTTCACGAGAGAGAAAAATAAG 59.353 38.462 0.00 0.00 42.17 1.73
2869 3151 6.522054 ACTGGTTCACGAGAGAGAAAAATAA 58.478 36.000 0.00 0.00 42.17 1.40
2870 3152 6.097915 ACTGGTTCACGAGAGAGAAAAATA 57.902 37.500 0.00 0.00 42.17 1.40
2871 3153 4.962155 ACTGGTTCACGAGAGAGAAAAAT 58.038 39.130 0.00 0.00 42.17 1.82
2872 3154 4.369182 GACTGGTTCACGAGAGAGAAAAA 58.631 43.478 0.00 0.00 42.17 1.94
2873 3155 3.243771 GGACTGGTTCACGAGAGAGAAAA 60.244 47.826 0.00 0.00 42.17 2.29
2874 3156 2.296471 GGACTGGTTCACGAGAGAGAAA 59.704 50.000 0.00 0.00 42.17 2.52
2875 3157 1.887198 GGACTGGTTCACGAGAGAGAA 59.113 52.381 0.00 0.00 38.36 2.87
2876 3158 1.074084 AGGACTGGTTCACGAGAGAGA 59.926 52.381 0.00 0.00 0.00 3.10
2877 3159 1.470890 GAGGACTGGTTCACGAGAGAG 59.529 57.143 0.00 0.00 0.00 3.20
2878 3160 1.202891 TGAGGACTGGTTCACGAGAGA 60.203 52.381 0.00 0.00 0.00 3.10
2879 3161 1.068194 GTGAGGACTGGTTCACGAGAG 60.068 57.143 0.00 0.00 34.94 3.20
2880 3162 0.959553 GTGAGGACTGGTTCACGAGA 59.040 55.000 0.00 0.00 34.94 4.04
2881 3163 3.498676 GTGAGGACTGGTTCACGAG 57.501 57.895 0.00 0.00 34.94 4.18
2895 3177 2.182030 GTCGGGAGAAGCCGTGAG 59.818 66.667 0.00 0.00 42.89 3.51
2896 3178 3.379445 GGTCGGGAGAAGCCGTGA 61.379 66.667 0.00 0.00 42.89 4.35
2897 3179 4.796231 CGGTCGGGAGAAGCCGTG 62.796 72.222 0.00 0.00 41.83 4.94
2918 3200 4.530857 GTGACCTCCATCGGGCCG 62.531 72.222 22.51 22.51 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.