>input_sequence_65012
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---------------------------------------------------------ATGCGGGAGCAGCTCGCGGCCGC
CGAGAAGGCCAGGAAGGACGCGCGCGGCGCCTTCGCCGATGCCAAGAAGCGGTTCGCCGCGAACGCGAAGAAGAGGGAAG
CCGCCGCTCCGGCACCGGTCGAACAGGATACCAATGTGCGGCCGCCAGAACAGAAGCAGCGGGAGGAGGAGGCAGAAGTT
GTCGCAGACGACGTTGCAAATGGTGACGGCGAGGAGAGAAGATGCATGGTCGACCGCGAGGACAATGAGTCCCGGGTTGA
GGAGGTGGCCGAGAAGACGACTGATAATGGCGATGAGGTGAGCAACAGCATTGCCGTCGTTGGAGTCGACGGTGCTGGCA
ACGAGGGGAACCCGGAGGCGGACCAGCTGTGGAGCAAGCTTGTGGCGAAAGACAGGGAGGTGTACGAGGTGAGGGCGAAG
CTGATGCTGAAGGACATGGAGGTCGACGAGCTGAAAGCTGAGCTGACGGCGAAGGACGCGAACATCGGCACGCTGACGGC
AGAGCTGGTCGCAAAGGACGCCGAGTTCGCCGCTCTCAGAGCCGAGAACGCCGAGCTCACGAAGACGGCCTCCGGCGCCG
CCGAGGCCGACAGGAAGACGACGGCCGCGAAGGCGAGGGAAGCCGAGCGCGCGCTGATGGACAGCGCGGCGCGTGAGGCC
CGGCTGGCCGAGCGGATGAGGGAGTCGGAGCGCGCGCGGGGGGCACTGGAGGCCGAGGCGCGCCGCATCCGCGTCCAGAG
CGAGCAGTGGCGCAAGGCGGCCGAGGAGGCCGCGGCGGTGCTCGGCGGCGCGGGTCACCACGTTGGCGCGGAGGAGACGG
ACGAGGACAGGCAGCGGGACGCGGGAGACGGGGGCTCCGGTGTGAAGAAGAAGCCGGCCGGCGGCGCCGTGCGGCTGCTC
GCCGACCTGTGGAAGAAGAGGGCGTCGAAGTGA-----------------------------------------------
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>chr1A_1_TraesCS1A01G334200
CACGTCCCCGTGCAGTGAGTGCACCTTCGTACGTGCCGACGCAGGTTACAACTCCCATCATTCGGCCGGTCAAGATAAAG
AACTCGGTTCCTGAATTCTAG---------------------------------------------------CTTCTCGT
AA---TTTTTACATTTTTCTGCGGAGAAGACCATCAAAAACTTAATAGCATCT---------------------------
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-----------------------------TGGTGACGATGACAATCTAACTGGATTCAAAACGAGACGCAAGAAGAAATT
TG-AAAAGGAAGGCACCCACT----------------------GGGCTAGTACAAGTCAAGAACCTTAACCCTGAAACAA
GATTAAGCATGCAGTTCCAAATTCTGAGTCACAGCAATAATCCCGAGAATGTCCACGTTACCAGCATCAATTAGTACCCA
AATAAGACTTGCAATCCAACCAAAACGTACGTCCCCAACGCCCGGTCCTTGAGCGATTATAATTCCGAGTTTGAAGTT--
---------TCAGAAACCATCGTTCTAGC--TAGCTTGTTTCGACAGACAGAAACTA-CGGTTGGTTCCGATGCTCGGGC
GCGCCGGGGCCGCCAAGAAGGCGAGCAAGTTCGAGGACTCGGACAGCAGCAGCCGCATGTCACGACCCAGGTATCTA---
---------AACCTGATCTGAAATTGTCTCGTAGTAATGTCATGTTTTACTGCTTCAAGTTTGTGCCCT----GATCGAA
CTTCACTTCAGGGCCATGTCTGAGCTGCCGCACCGGCCAGCCGCTCGCCTGCCCACGCGCCCGAGGACGGCGACGGTGGC
TGTGGGCTCGGAGGCCAGTGGCGGCGTGCGTCACCGTGGTGTCGGCGTCGGCCGAGGGGCGGCGCCCCGCAGCCCATTGC
ATGAGGCAAGCACGTTCCCTCGCGCGCCAACTGATCACTGCATTTACACCCTGTACGT--------------GACATCTG
ACTTGATGTAACTTTGCATGGTGGTGGGTTTGCAGAAGAAACCCGCAGGTGCAGCCGCTGGTGGTGGCGGTGGTGCAGGG
CCGCGGGCGGCGGAGCTGGAGGCCAAGCTGGGGAAGGCGCACGACCAGCTTGCGGCAATGCGGGAGCAGCTCGCGGCCGC
CGAGAAGGCCAGGAAGGACGCGCGCGGCGCCTTCGCCGATGCCAAGAAGCGGTTCGCCGCGAACGCGAAGAAGAGGGAAG
CCGCCGCTCCGGCACCGGTCGAACAGGATACCAATGTGCGGCCGCCAGAACAGAAGCAGCGGGAGGAGGAGGCAGAAGTT
GTCGCAGACGACGTTGCAAATGGTGACGGCGAGGAGAGAAGATGCATGGTCGACCGCGAGGACAATGAGTCCCGGGTTGA
GGAGGTGGCCGAGAAGACGACTGATAATGGCGATGAGGTGAGCAACAGCATTGCCGTCGTTGGAGTCGACGGTGCTGGCA
ACGAGGGGAACCCGGAGGCGGACCAGCTGTGGAGCAAGCTTGTGGCGAAAGACAGGGAGGTGTACGAGGTGAGGGCGAAG
CTGATGCTGAAGGACATGGAGGTCGACGAGCTGAAAGCTGAGCTGACGGCGAAGGACGCGAACATCGGCACGCTGACGGC
AGAGCTGGTCGCAAAGGACGCCGAGTTCGCCGCTCTCAGAGCCGAGAACGCCGAGCTCACGAAGACGGCCTCCGGCGCCG
CCGAGGCCGACAGGAAGACGACGGCCGCGAAGGCGAGGGAAGCCGAGCGCGCGCTGATGGACAGCGCGGCGCGTGAGGCC
CGGCTGGCCGAGCGGATGAGGGAGTCGGAGCGCGCGCGGGGGGCACTGGAGGCCGAGGCGCGCCGCATCCGCGTCCAGAG
CGAGCAGTGGCGCAAGGCGGCCGAGGAGGCCGCGGCGGTGCTCGGCGGCGCGGGTCACCACGTTGGCGCGGAGGAGACGG
ACGAGGACAGGCAGCGGGACGCGGGAGACGGGGGCTCCGGTGTGAAGAAGAAGCCGGCCGGCGGCGCCGTGCGGCTGCTC
GCCGACCTGTGGAAGAAGAGGGCGTCGAAGTGATCGGAAAGTACGCGCCGGGCGCGGTCGATCGTGCCGCACTGCGCGCG
CGC----ATGGG--------TATTTGCTGATGTGCTCCATCGATCGGGTGCCTCTC---CTGTAACTAGATAACGTGCAC
GTA---CGTGTTTATTTACCGTTCACAGTTTTTTCTACTAGATGATTTCTTACTGATGTTTTTTGTTGCGTGTTCGCTGT
ACCGTGCCACTATTATTCCGAGCCGCCAGAGGCTGATTTACCAAGAGGAGGAACGAACACTGTGCTGCTGAATCAGTGAT
GATGAACACCAGACCATTACCTGCTAAATTACTGCACTCTGTGTGCTGTATGTCTCCGATGCCCCGAGCCGCGAGGACTT
AAGCAAGTCTCGGTCAAATGACACAACATATATTCGC---AAAAAAAGTGACACAACATATAAAAGAAAGAAAGAAAATT
CAAAAGAAAATTTTACACGGATCTTCATATAAGATCTCACAAATTTAGCATCTACA---ACTTCATTAAGTCCCAATGGA
CTGAGATTTAGCAACCCGGTTTGCAGGTAGGCCTATTGCCTACAAAATTGGCACAAACATGCTGGACGCACTTTATAATT
TTGTAGAGGTTGTTGGGACTGTGCGCAAACACAGTGTCGTCAAACTTCAAACTTCATAATCTTTATCTTGCTATTCTTTT
ACATTTACTTGAAATGTATGGTGTCAGTTTTGACCACTAAAACAAATAAAAGTAAATCAAACACTAAAAATACGAGTGAA
TTCCGGTTTTTACCCCCTATTTTGACATTTTTGACACTACTTACCCCATTTAGCGAAATTTCATCCATTTTACCCCATTT
AACAAAAGTTCTGCCACGATTTACCCTGTTTAAAATTTTATGAGTGTTCTGACAGACAGGTCCCAATTGTGAAGTCTAGC
TGGCATGCCACATCGATGGTTTTTTCTTGCTTATTTTTCTCTCTCGTGAACCAGTCCTCACGGCTTCTCCCGACCGGACC
GGCCCGATGGAGGTCAC
>chr1D_1
CACGTCTCCGTGCAGTGAGTGCACCTTCGTACGTGCCAACGCAGGTTACAACTCCCATCATTCGGCCGGTCGGGATAAAG
AGCTCGGTTCCTGAATTCTAG---------------------------------------------------TATCTCGT
AAAC-TTTTACAATTTTTCTGCGGAGAAGGCCATCAAAAACATAATAGCATCGTGGTGACGAACAGAGTGTGCTGGATAT
ATGTTTCTGAAACTGGCAGAGTTCAATGCAAGTACGGAGGAGGGATTCAAGAAATCGATGTAGGCAGATCAACTCTTTTT
TTATGAGGGTCGGCAGATCAACTTCTTGCTGTTGATGATGACAATCTAACTGGATTGCTATATCCCT--AAGAAGAAAGA
GG-AAAAGGAAGGCACCCACT----------------------GTGCCAGTACAAGTCAAGAACCTTGACGCTGAAACAA
GATTAAGCATGCAGTTCCAAATTCTCAGTCACAGCAATAATCCGGAGAATGTCCACGTTACCAGCATCAATTAGTACCCA
AATGAGACTTGCAATCCAACCAAAACGTACATCCCCAACGCTCGGTCCTTGAGCGATTATAATTCCGACTTTGAAGTTGC
ATTCTGCTTTCAGAATCCATCGTTCAAGCTATAGCTTGTTTCGACAGAGAGAAACTCCCGGTTGGTTCCGATGCTCGGGC
GCGCGGGGGCCGCCAAGAAGGCGAGCAAGTTCGAGGACTCGGACAGCAGCAGCCGCATTTCACGGCCCAGGTATCGATCG
ACCGCTGCTAACCTGATCTGAATGTGTCTCGTAGTAATGTCATGTTTAACTGCTTCAAGTTTGTGCCCTGACTGATCGAA
CTTCACTTCAGGGCCATGTCCGAGCTGCCGCACCGGCTCGCCACTCGCGTGCCAACGCGCCCGAGGACGGCGACGGTGGC
CGTGGGCGCGGAGGCGAGTGGCGGCGCGCGTCACCGTGGTGCCGGCGTCGGCCGAGGGGCGGCGCCCCGCAGCCCACTGC
ACGAGGCAAGCATGTTCTCC--CGCGCGAACTGATCACTGCATTTAAACCCTGTACGTACAGCT--AGACATGACACCTG
ACTTGATACAACTTTGCA----------------GAAGAAACCCGCAGATGCGATCGCTGGTGGTGGCGGTGGTGCAGGG
CCGCGGGCGGCGGAGCTGGAGGCCAAGCTGGGGAGGGCGCACGACCAGCTGGCGGCCATGCGGGAGCAGCTCGCAGCCGC
CGAGAAGGCCAGGAAGGACGCGCGCGGCGCCTTCGCCGAGGCCAAGAAGCGGTTCGCCGCGAACGCAAAGAAGAGGGAAG
CCGCCGCTCCGGCGCCGGTCGAACAGGATACCAATGTGCGGCCGCCAGAACAGAGGCAGCAGGAAGAGGAGGCAGAAGTT
GTCGCGGACGACGTTGCAAATGGTGACGGCGAGGAGAGAAGAGGCATGGTCGACCCCGAGCACAATGAGTCCCGGGTTGA
GGAGGTGGCCGAGAAGACGACTGATAATGGCCATGAGGTGAGCAACAGTATTGCCGTCGTTGGAGACGACGGTGGTGGCA
ACGAGGGAAACCCGGAGGCCGACCAGCTGTGGAGCAAGCTTGTGGCGAAAGACAGGGAGGTGTACGAGCTGAGGGCGAAG
CTGATGCTGAAGGACATGGAGGTCGACGAGCTGAGATTGGAGCTGACGGCGAAGGACGCGAACATCGGCATGCTGACGGC
AGAGCTGGTCGCAAAGGATGCCGAGTTCGCCGCTCTCAGAGCCGAGAACGCCGAGCTCACGAAGACGGCCTCCGACGCCG
CCGATGCCGGCAGGAAGACGACGGCCGCGAAGGCGAGGGAAGCCGAGCGCGCGCTGATGGACAGCGCGGCGCGGGAGTCC
CGGCTAGCCGAGCGACTGAGGGAGTCGGAGCGTGCGCGGGAGGCGCTGGAGGCCGAGGCGCGCCGCATCCGCGTCCAGAG
CGAGCAGTGGCGCAAGGCGGCCGAGGAGGCCGCGGCGGTGCTCGGCGGCGCGGGTCACCACGTTGGCGCGGAGGAGACGG
ACGAGGACAAGCAGCGGGACGCGGGAGACGGGGGCTCCGGTGGGAAGAGGAAGCCGGCCGGCGGCGCCGTGCGGCTGCTC
GCCGACCTGTGGAAGAAGAGGGCGTCCAAGTGATCGGAAAGTACGTGCCGGGCGCGGTCGATCGTGCCGCACTGCGCGCG
CGCGCGCATGGG--------AATTTGCTGATGCGCTCGATCGATCGGGTGCCTCTCCAGCTGTAACTAGATAACGTGCAC
GTAGTACGTGTTTGTTTACCGTTCACAGTTTTCTT---TAGATGATTTATTACTGTTGTTTTTTGTTGCGTGTTCGCTGT
ACCGTGCCACTATTATTCCGAGCCGCGAGACGCTGATTTAC-GAGAGGAGGAACGAACACTGTCTTGCTGAATTCGTGGT
GATGAACACCAGAGCATTACCTGCTAAATTACTGCACTCTTTGTGCTTGATGTCTCCTATGCCCGATCCGGA---GACTT
AACCAAGTCCCGGTCAGGTGACCCAACATATACCTCGCAAAAAAAAAGTGACACAACATATAAAAGAAAGGAATAAAAAT
CAAAAGAAAATTTTACATGAATCTTCATGTAAGATCTAACAGATTTAGCATCTAGTACGACTTCGTTAAGTCTCAATGGA
TTGAGATTTAGCAACCCCGGTTGGAGGTAGGCCTGTTGCCTACAAAACTGGCACAAACATGCTGGACGCACTTTATAAGT
TTGTAGAGGTTGTTGGGACTGTGCACAAACACTGTGTCGTCAAACTGCAAGCTTCGTAATCTTTATTTTGTTATTCTTTT
ACATTTATTTGAAATGTATGGTGCTAATTTTGACCATTAAAA--------------------------------------
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>chr1B_1
CACGCCCCCGTGCAGTGAGTGCACCTTCGTACGTGCCGACGCAGGTCACCACTTCCATCATTCGGCCAGTCAAGATAAAG
AACTAGGTTCAACCGCAAAAAAGAAAAAGGAAAAGAAAAAAGATAAAGATAAAGAACTAGGTTCCTAAATTATATCTCGT
ATTTTTTTTAATATTTTTCTGCAGAGAAGACAATCAAAAACAT--TAGCATCATGGTGACGAGCAGAGTGTGATGGATAT
CT-TTTCTGAAACTGGCAAAGTTGAATGCAAGTACGGAGGAAGGATCCAAGAAATCGATGGAGGCAGATCAA--------
---------------------CTTCTTGCTGTTGATGATGACAATCTAACTGGATTGTTATG--------AGAAGAAAGA
GGAAAAAGGAAGGCACCCACTTGTGTTGGTCACTCTGTAGTCTGTGCTAGTACAAGTCAAGAACCTTGACGCTGAAACAA
GATTAAGCATGCAGTTCCAAGTTCTCAATCACAGCGATAATCCGGAGAATGTCCACGTTACCTACATCAATTACTACCCA
AATGAGACTTGCAATCCAACCAAAACGTACGCCCCCAACGCCCGGTCCTTGACCGATTATAATTCCGAGTTTGAAGTTGC
ATTCTGTTTCCAGGAACCATCGTTCTAGC--CAGCTTGTTTCGACAGAGAGAAACTCC-GGTTGGTTTCGATGCTCGGGC
GCGCGGGGTCCGCCAAGAAGGCGAGCAAGTTCGAGGACTCGGACAGCAGCAGCCGCATGTCACGACCCAGGTATTGATCG
AGCACTGCTAACCTGATCTGAATGTGTCTCGTAGTAATGTCATGTTTAACTGCTTCAAGTTTGTGCCCTCACTGATCGAA
CTTCACTTCAGGGCCATGTCTGAGCTGCCGCACCGGGCCGCGACTCGCGTGCCCACGCGCCCGAGGACGGCGACTGTGGC
CGTGGGCGCCGTGGCGAGTGGCGGCGTGCGTCCCCGTGGTGTCGGCGTCGGCCGAGGGGCGGCGCCTCGCAGCCCACTGC
ACGAGGTAAGCACGTT--CTCGCGCGCGAACTGATCACTGCATTTACACCATGTACGTACAGTTAGAGACATGACACCTG
ACTTGATGCAACTCTGCATGGTGGTGGGTTTGCAGAAGAAACCCGCAGGTGCGGTCGCTGGTGGTGGCGGTGGTGCAGGG
CCGCGGGCGGCGGAGCTGGAGGCCAAGCTGGGGAAGGCGCACGACCAGCTTGCAGCGATGCGGGAGCAGCTCGCGGCCGC
CGAGAAGGCCAGGAAGGACGCGCGCGGCGCGTTCGCCGAGGCCAAGAAGCGGTTCGCCGCGAACGCGAAGAAGAGGGAAG
CCGCCTCTTCGGTGCCGGCCGCACAGGATACCAATGTGCGGCCGCCAGAACAGAAGCAGCAGGAGGAGGAGGCAGAAGTT
GTCGCAGAGGACGTTGTAAACGGCGACGGCGAGGAGACAAGTGGCATGGTCGACCGCGAGAACAATGAGTCCCGGGTTGA
GGAGGTGGCCGAGAAGACGGCTGATAATGGCGATGAGGCGAGCAACAGTATTGCCGTCGTTGGAGACGACGATGGTGGCG
ATGAGGGGAACCTGGAGGCCGGCCAGCTGTGGACCAAGCTTGTGGCCAAAGACAGGGAGGTGTACGAGCTGAGGGCGAAG
CTGATGCTGAAGGACATGGAGGTCGACGCGCAGAAATTGGAGCTGACGGCGAAGGACGCGAACATCGGCACGCTGGTGGC
AGAGCTGGTCGCAAAGGACGCCTAGTTCGCCGCTCTCAGAGCCGAGAACTCCGAGCTGACGAAGACGGCCTCCGACGCCG
CCGAGGCCGACAGGAAGACGACGGCCGCGAAGGCGAGGGAAGCCGAGCGCGCGCTGATGGACAGCGCGGCGCGTGAGGCC
CGGCTGGGCGAGCGGCTGAGGGAGTCGGAGCGCGCGCGGGAGGCGCTGGAGGCCGAGGCGCGCCGCATCCGCGTCCAGAG
AGAGCAGTGGCGCAAGGCGGCCGAGGAGGCCGCGGCGGTGCTCGGCGGCGCGGGTCACCACGTTGGCACGGAGGAGACGG
ACGAGGACAAGCAGCGGGACGCGGGAGAGGTGGACTCCGGTGTGAAGAGGAAGCCGGCCGGCGGCGCCGTGCGGCTGCTC
GCCGACCTGTGGAAGAAGAGGGCGTCGAAGTGATCGGA----------------------------CCACACTTCGCGCG
CGC----ATGGGTATTTGGCTATTTGCTGATGTGCTCGATCGATC-----------------------------------
---GTACGTGTTTGTTTACCGTTCACAGTTTTTTT---TAGATGATTTATTACTGTTGTTTCTTGTTGCGTGTTCGCTGT
ACCGTGCCACTATTATTTCGAGCCGCGAGACGCTGATTTACCGAGAGGAGGAACGAACACTGTGCCGCTGAATTAGTGAC
GATGAACACCAGAGCATTACCTGCTAAATTACGGCATTCTGTGTGCTGGATGTCTCCGATGCCCCGAGCCGCGAG-----
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>SNPs
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------------------------------------------------------------------------SS------
---------S-S-----------------------------S----------S---------------------------
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-------------------------------S---S--------------------SSS-SSSSSSSSS---------SS
S-------------------------------------------S----------------------S--S---------
-------------------------S-----------------S------------------------------------
---S----------------------------------------------------------------------------
------------------------------------------------S-------S-----------------------
----S----------------------------------------------------------------------S----
----------------------SS-----------------------S--------------------------------
--------------------------------------S---S-----S-------------------------------
S------S-------S------------------------------------------------------------S---
-S---------------S---------S------------------------------------------------S---
--------S-------------------------------------------S-S-------------------------
--------------------------------------------------------S-----------------------
---------------------------------------S----------------------------------------
-------------S----------------------------------------------S-------------------
------------------------------------------S-----------------S-------------------
------------------------------------------------S----------------S--------S-----
-------------------S------------------------------------------------S-----------
------------------------------------SSS-----------------------------------------
--------------------------------------------------------------------------S-----
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---------------S------------------------S---S-----------------------------------
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---------S--------------------------------------S-------------------------------
---------------------------------------------S----------------------------------
-------------------------------------S------------------------------------------
-------------S--------------------SSSS----------S------S------------------------
--------------------------S---S-----------S------------------------------S------
-------------S----------------------------------S-------------------------------
--S------S------SS----S---------SSSSS---------------------------------S--S----S-
-----------------S-S--------S--------S---S------------SS--------S-------S-------
S----------------S-S---S----------S------------S------------------------------S-
------------------------S-------S-------------S---S----S----------S---S---------
-------S---------------SS-S---------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_445
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-------------------------AAAAGGAAGGCACCCACTGG-----------------------------------
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>reverse_1501
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------------------------------------------------------------GACAATGAGTCCCGGGTTGA
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>forward_1483
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-----------------------TGACGGCGAGGAGAGAAGAT-------------------------------------
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>reverse_3110
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---------------------------------------------------------------------TGAAGTCTAGC
TGGCATGCC-----------------------------------------------------------------------
-----------------
