Multiple sequence alignment - TraesCS1A01G332700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G332700 chr1A 100.000 3068 0 0 1 3068 521230450 521233517 0.000000e+00 5666
1 TraesCS1A01G332700 chr7A 94.175 2369 97 15 721 3068 631511756 631514104 0.000000e+00 3572
2 TraesCS1A01G332700 chr1D 96.734 1623 32 9 1465 3068 420202427 420200807 0.000000e+00 2684
3 TraesCS1A01G332700 chr1D 95.255 274 7 2 1213 1481 420203299 420203027 2.190000e-116 429
4 TraesCS1A01G332700 chrUn 88.395 517 49 5 117 622 7545505 7544989 2.020000e-171 612


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G332700 chr1A 521230450 521233517 3067 False 5666.0 5666 100.0000 1 3068 1 chr1A.!!$F1 3067
1 TraesCS1A01G332700 chr7A 631511756 631514104 2348 False 3572.0 3572 94.1750 721 3068 1 chr7A.!!$F1 2347
2 TraesCS1A01G332700 chr1D 420200807 420203299 2492 True 1556.5 2684 95.9945 1213 3068 2 chr1D.!!$R1 1855
3 TraesCS1A01G332700 chrUn 7544989 7545505 516 True 612.0 612 88.3950 117 622 1 chrUn.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 714 0.037697 TCCACCAAATCTCACCGTCG 60.038 55.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2868 1.000396 GCCCTCTGCATCCCTTTGT 60.0 57.895 0.0 0.0 40.77 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.930826 AAACTGGAAGACGGTGTGAT 57.069 45.000 0.00 0.00 39.10 3.06
21 22 2.930826 AACTGGAAGACGGTGTGATT 57.069 45.000 0.00 0.00 39.10 2.57
22 23 2.169832 ACTGGAAGACGGTGTGATTG 57.830 50.000 0.00 0.00 37.28 2.67
23 24 0.798776 CTGGAAGACGGTGTGATTGC 59.201 55.000 0.00 0.00 34.07 3.56
24 25 0.605319 TGGAAGACGGTGTGATTGCC 60.605 55.000 0.00 0.00 0.00 4.52
25 26 0.321653 GGAAGACGGTGTGATTGCCT 60.322 55.000 0.00 0.00 0.00 4.75
26 27 0.798776 GAAGACGGTGTGATTGCCTG 59.201 55.000 0.00 0.00 0.00 4.85
27 28 0.606401 AAGACGGTGTGATTGCCTGG 60.606 55.000 0.00 0.00 0.00 4.45
28 29 1.003839 GACGGTGTGATTGCCTGGA 60.004 57.895 0.00 0.00 0.00 3.86
29 30 1.003355 ACGGTGTGATTGCCTGGAG 60.003 57.895 0.00 0.00 0.00 3.86
30 31 1.296392 CGGTGTGATTGCCTGGAGA 59.704 57.895 0.00 0.00 0.00 3.71
31 32 0.107508 CGGTGTGATTGCCTGGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
32 33 1.386533 GGTGTGATTGCCTGGAGATG 58.613 55.000 0.00 0.00 0.00 2.90
33 34 1.386533 GTGTGATTGCCTGGAGATGG 58.613 55.000 0.00 0.00 0.00 3.51
34 35 0.256752 TGTGATTGCCTGGAGATGGG 59.743 55.000 0.00 0.00 0.00 4.00
35 36 0.466922 GTGATTGCCTGGAGATGGGG 60.467 60.000 0.00 0.00 0.00 4.96
36 37 1.152368 GATTGCCTGGAGATGGGGG 59.848 63.158 0.00 0.00 0.00 5.40
37 38 2.990994 GATTGCCTGGAGATGGGGGC 62.991 65.000 0.00 0.00 44.31 5.80
41 42 3.801997 CTGGAGATGGGGGCGCTT 61.802 66.667 7.64 0.00 0.00 4.68
42 43 4.113815 TGGAGATGGGGGCGCTTG 62.114 66.667 7.64 0.00 0.00 4.01
43 44 4.883354 GGAGATGGGGGCGCTTGG 62.883 72.222 7.64 0.00 0.00 3.61
47 48 4.783501 ATGGGGGCGCTTGGCATT 62.784 61.111 7.64 0.00 46.16 3.56
50 51 3.381136 GGGGCGCTTGGCATTCAA 61.381 61.111 7.64 0.00 46.16 2.69
61 62 2.436417 TGGCATTCAAGACCTGTTAGC 58.564 47.619 0.00 0.00 0.00 3.09
62 63 1.745653 GGCATTCAAGACCTGTTAGCC 59.254 52.381 0.00 0.00 0.00 3.93
63 64 1.398390 GCATTCAAGACCTGTTAGCCG 59.602 52.381 0.00 0.00 0.00 5.52
64 65 1.398390 CATTCAAGACCTGTTAGCCGC 59.602 52.381 0.00 0.00 0.00 6.53
65 66 0.685097 TTCAAGACCTGTTAGCCGCT 59.315 50.000 0.00 0.00 0.00 5.52
66 67 0.685097 TCAAGACCTGTTAGCCGCTT 59.315 50.000 0.00 0.00 0.00 4.68
67 68 1.079503 CAAGACCTGTTAGCCGCTTC 58.920 55.000 0.00 0.00 0.00 3.86
68 69 0.389948 AAGACCTGTTAGCCGCTTCG 60.390 55.000 0.00 0.00 0.00 3.79
69 70 2.434359 ACCTGTTAGCCGCTTCGC 60.434 61.111 0.00 0.00 0.00 4.70
80 81 2.472049 GCTTCGCGTGAACTCTGC 59.528 61.111 7.45 6.10 0.00 4.26
85 86 2.126071 GCGTGAACTCTGCGCCTA 60.126 61.111 4.18 0.00 44.67 3.93
86 87 2.445438 GCGTGAACTCTGCGCCTAC 61.445 63.158 4.18 0.00 44.67 3.18
87 88 2.152699 CGTGAACTCTGCGCCTACG 61.153 63.158 4.18 1.25 44.07 3.51
88 89 1.211969 GTGAACTCTGCGCCTACGA 59.788 57.895 4.18 0.00 43.93 3.43
89 90 1.071567 GTGAACTCTGCGCCTACGAC 61.072 60.000 4.18 0.00 43.93 4.34
90 91 1.868251 GAACTCTGCGCCTACGACG 60.868 63.158 4.18 0.00 43.93 5.12
91 92 2.249557 GAACTCTGCGCCTACGACGA 62.250 60.000 4.18 0.00 43.93 4.20
92 93 2.277373 CTCTGCGCCTACGACGAC 60.277 66.667 4.18 0.00 43.93 4.34
93 94 2.745100 TCTGCGCCTACGACGACT 60.745 61.111 4.18 0.00 43.93 4.18
94 95 2.277373 CTGCGCCTACGACGACTC 60.277 66.667 4.18 0.00 43.93 3.36
95 96 2.745100 TGCGCCTACGACGACTCT 60.745 61.111 4.18 0.00 43.93 3.24
96 97 2.277373 GCGCCTACGACGACTCTG 60.277 66.667 0.00 0.00 43.93 3.35
97 98 2.403987 CGCCTACGACGACTCTGG 59.596 66.667 0.00 0.00 43.93 3.86
98 99 2.102553 GCCTACGACGACTCTGGC 59.897 66.667 0.00 3.79 0.00 4.85
99 100 2.408241 GCCTACGACGACTCTGGCT 61.408 63.158 0.00 0.00 37.58 4.75
100 101 1.722677 CCTACGACGACTCTGGCTC 59.277 63.158 0.00 0.00 0.00 4.70
101 102 0.745128 CCTACGACGACTCTGGCTCT 60.745 60.000 0.00 0.00 0.00 4.09
102 103 1.088306 CTACGACGACTCTGGCTCTT 58.912 55.000 0.00 0.00 0.00 2.85
103 104 1.469308 CTACGACGACTCTGGCTCTTT 59.531 52.381 0.00 0.00 0.00 2.52
104 105 0.674534 ACGACGACTCTGGCTCTTTT 59.325 50.000 0.00 0.00 0.00 2.27
105 106 1.063806 CGACGACTCTGGCTCTTTTG 58.936 55.000 0.00 0.00 0.00 2.44
106 107 1.433534 GACGACTCTGGCTCTTTTGG 58.566 55.000 0.00 0.00 0.00 3.28
107 108 0.603975 ACGACTCTGGCTCTTTTGGC 60.604 55.000 0.00 0.00 0.00 4.52
108 109 1.630244 CGACTCTGGCTCTTTTGGCG 61.630 60.000 0.00 0.00 35.06 5.69
109 110 1.916697 GACTCTGGCTCTTTTGGCGC 61.917 60.000 0.00 0.00 35.06 6.53
110 111 1.968017 CTCTGGCTCTTTTGGCGCA 60.968 57.895 10.83 0.00 35.06 6.09
111 112 2.192608 CTCTGGCTCTTTTGGCGCAC 62.193 60.000 10.83 0.00 35.06 5.34
112 113 3.273080 CTGGCTCTTTTGGCGCACC 62.273 63.158 10.83 0.00 35.06 5.01
113 114 2.985847 GGCTCTTTTGGCGCACCT 60.986 61.111 10.83 0.00 36.63 4.00
114 115 2.563427 GCTCTTTTGGCGCACCTC 59.437 61.111 10.83 0.00 36.63 3.85
115 116 2.260869 GCTCTTTTGGCGCACCTCA 61.261 57.895 10.83 0.00 36.63 3.86
145 146 1.078918 GGCTGCCTTGAAATTGCCC 60.079 57.895 12.43 0.00 34.81 5.36
186 187 3.909430 TCGGCAACTATCGTCATTATCC 58.091 45.455 0.00 0.00 0.00 2.59
192 193 5.668866 GCAACTATCGTCATTATCCGCAATC 60.669 44.000 0.00 0.00 0.00 2.67
194 195 2.502213 TCGTCATTATCCGCAATCGT 57.498 45.000 0.00 0.00 0.00 3.73
195 196 2.816689 TCGTCATTATCCGCAATCGTT 58.183 42.857 0.00 0.00 0.00 3.85
207 212 1.026182 CAATCGTTGCTGCCCTGCTA 61.026 55.000 0.00 0.00 0.00 3.49
220 225 5.221303 GCTGCCCTGCTAAAATTCATATTGA 60.221 40.000 0.00 0.00 0.00 2.57
231 236 4.866508 ATTCATATTGATTGCTGCCCTG 57.133 40.909 0.00 0.00 0.00 4.45
232 237 1.958579 TCATATTGATTGCTGCCCTGC 59.041 47.619 0.00 0.00 0.00 4.85
233 238 1.961394 CATATTGATTGCTGCCCTGCT 59.039 47.619 0.00 0.00 0.00 4.24
247 252 1.589993 CTGCTCGGTATGTCAGGCG 60.590 63.158 0.00 0.00 0.00 5.52
273 278 2.564062 CCAATTTGTCCAAGCACTCCAT 59.436 45.455 0.00 0.00 0.00 3.41
293 305 7.885922 ACTCCATAATAGATCAGTAGTCGATGT 59.114 37.037 0.00 0.00 0.00 3.06
297 309 3.706802 AGATCAGTAGTCGATGTGCTG 57.293 47.619 8.86 8.86 0.00 4.41
315 327 2.733026 GCTGCACAAACACAATTGGATC 59.267 45.455 10.83 0.00 34.56 3.36
326 338 3.501828 CACAATTGGATCAAGGACGTTCA 59.498 43.478 10.83 0.00 0.00 3.18
330 342 3.417069 TGGATCAAGGACGTTCAACAT 57.583 42.857 0.00 0.00 0.00 2.71
332 344 4.900684 TGGATCAAGGACGTTCAACATAA 58.099 39.130 0.00 0.00 0.00 1.90
340 352 7.597369 TCAAGGACGTTCAACATAATATATCCG 59.403 37.037 0.00 0.00 0.00 4.18
361 373 8.801882 ATCCGATTAAGTTGTGAAGGATTTTA 57.198 30.769 0.00 0.00 33.91 1.52
389 401 2.099141 TGGTGACTGCTATTGTGCTC 57.901 50.000 0.00 0.00 0.00 4.26
423 435 0.921166 ATCAGGACATCCCATGCACA 59.079 50.000 0.00 0.00 37.41 4.57
428 440 2.498481 AGGACATCCCATGCACAATTTG 59.502 45.455 0.00 0.00 37.41 2.32
440 452 5.471556 TGCACAATTTGATGGAAGTTCAT 57.528 34.783 5.01 0.00 0.00 2.57
441 453 5.472148 TGCACAATTTGATGGAAGTTCATC 58.528 37.500 5.01 6.76 42.72 2.92
446 458 6.878923 ACAATTTGATGGAAGTTCATCGAGTA 59.121 34.615 5.01 0.00 44.68 2.59
450 462 2.165167 TGGAAGTTCATCGAGTACCGT 58.835 47.619 5.01 0.00 39.75 4.83
488 500 1.539827 GGCTTACCACATCCAACACAC 59.460 52.381 0.00 0.00 35.26 3.82
490 502 2.226437 GCTTACCACATCCAACACACTG 59.774 50.000 0.00 0.00 0.00 3.66
500 512 2.480610 AACACACTGGGCTGCAACG 61.481 57.895 0.50 0.00 0.00 4.10
558 570 2.699251 CGCAGGGTACAAGTTTTTCC 57.301 50.000 0.00 0.00 0.00 3.13
560 572 2.621526 CGCAGGGTACAAGTTTTTCCTT 59.378 45.455 0.00 0.00 0.00 3.36
565 577 5.008712 CAGGGTACAAGTTTTTCCTTCAGTC 59.991 44.000 0.00 0.00 0.00 3.51
608 620 3.190079 GTGCACGAATCTGCTAATGAGA 58.810 45.455 0.00 0.00 38.07 3.27
612 624 1.789464 CGAATCTGCTAATGAGACGGC 59.211 52.381 0.00 0.00 0.00 5.68
614 626 1.032794 ATCTGCTAATGAGACGGCGA 58.967 50.000 16.62 0.00 0.00 5.54
654 666 9.994432 ATCTATTCTTAAAATTGCTTCAAGTCG 57.006 29.630 0.00 0.00 0.00 4.18
655 667 8.450964 TCTATTCTTAAAATTGCTTCAAGTCGG 58.549 33.333 0.00 0.00 0.00 4.79
656 668 6.627395 TTCTTAAAATTGCTTCAAGTCGGA 57.373 33.333 0.00 0.00 0.00 4.55
657 669 6.241207 TCTTAAAATTGCTTCAAGTCGGAG 57.759 37.500 0.00 0.00 0.00 4.63
658 670 5.995282 TCTTAAAATTGCTTCAAGTCGGAGA 59.005 36.000 0.00 0.00 0.00 3.71
659 671 4.756084 AAAATTGCTTCAAGTCGGAGAG 57.244 40.909 0.00 0.00 36.95 3.20
660 672 2.393271 ATTGCTTCAAGTCGGAGAGG 57.607 50.000 0.00 0.00 36.95 3.69
661 673 0.320771 TTGCTTCAAGTCGGAGAGGC 60.321 55.000 0.00 0.00 36.95 4.70
662 674 1.807573 GCTTCAAGTCGGAGAGGCG 60.808 63.158 0.00 0.00 36.95 5.52
663 675 1.587054 CTTCAAGTCGGAGAGGCGT 59.413 57.895 0.00 0.00 36.95 5.68
664 676 0.456995 CTTCAAGTCGGAGAGGCGTC 60.457 60.000 0.00 0.00 36.95 5.19
665 677 2.196382 TTCAAGTCGGAGAGGCGTCG 62.196 60.000 0.00 0.00 36.95 5.12
666 678 2.359602 AAGTCGGAGAGGCGTCGA 60.360 61.111 0.00 0.00 36.95 4.20
667 679 2.400158 AAGTCGGAGAGGCGTCGAG 61.400 63.158 0.00 0.00 36.95 4.04
668 680 2.799814 AAGTCGGAGAGGCGTCGAGA 62.800 60.000 0.00 0.00 36.95 4.04
669 681 2.511829 TCGGAGAGGCGTCGAGAG 60.512 66.667 0.00 0.00 0.00 3.20
670 682 2.511829 CGGAGAGGCGTCGAGAGA 60.512 66.667 0.00 0.00 38.16 3.10
680 692 4.716003 TCGAGAGACTTCCAGCGA 57.284 55.556 0.00 0.00 33.31 4.93
681 693 2.942641 TCGAGAGACTTCCAGCGAA 58.057 52.632 0.00 0.00 33.31 4.70
682 694 1.244816 TCGAGAGACTTCCAGCGAAA 58.755 50.000 0.00 0.00 33.31 3.46
683 695 1.819288 TCGAGAGACTTCCAGCGAAAT 59.181 47.619 0.00 0.00 33.31 2.17
684 696 2.159366 TCGAGAGACTTCCAGCGAAATC 60.159 50.000 0.00 0.00 33.31 2.17
685 697 2.545731 GAGAGACTTCCAGCGAAATCC 58.454 52.381 0.00 0.00 0.00 3.01
686 698 1.902508 AGAGACTTCCAGCGAAATCCA 59.097 47.619 0.00 0.00 0.00 3.41
687 699 2.003301 GAGACTTCCAGCGAAATCCAC 58.997 52.381 0.00 0.00 0.00 4.02
688 700 1.087501 GACTTCCAGCGAAATCCACC 58.912 55.000 0.00 0.00 0.00 4.61
689 701 0.400213 ACTTCCAGCGAAATCCACCA 59.600 50.000 0.00 0.00 0.00 4.17
690 702 1.202879 ACTTCCAGCGAAATCCACCAA 60.203 47.619 0.00 0.00 0.00 3.67
691 703 1.885887 CTTCCAGCGAAATCCACCAAA 59.114 47.619 0.00 0.00 0.00 3.28
692 704 2.214376 TCCAGCGAAATCCACCAAAT 57.786 45.000 0.00 0.00 0.00 2.32
693 705 2.091541 TCCAGCGAAATCCACCAAATC 58.908 47.619 0.00 0.00 0.00 2.17
694 706 2.094675 CCAGCGAAATCCACCAAATCT 58.905 47.619 0.00 0.00 0.00 2.40
695 707 2.098117 CCAGCGAAATCCACCAAATCTC 59.902 50.000 0.00 0.00 0.00 2.75
696 708 2.749076 CAGCGAAATCCACCAAATCTCA 59.251 45.455 0.00 0.00 0.00 3.27
697 709 2.749621 AGCGAAATCCACCAAATCTCAC 59.250 45.455 0.00 0.00 0.00 3.51
698 710 2.159379 GCGAAATCCACCAAATCTCACC 60.159 50.000 0.00 0.00 0.00 4.02
699 711 2.095853 CGAAATCCACCAAATCTCACCG 59.904 50.000 0.00 0.00 0.00 4.94
700 712 2.879103 AATCCACCAAATCTCACCGT 57.121 45.000 0.00 0.00 0.00 4.83
701 713 2.403252 ATCCACCAAATCTCACCGTC 57.597 50.000 0.00 0.00 0.00 4.79
702 714 0.037697 TCCACCAAATCTCACCGTCG 60.038 55.000 0.00 0.00 0.00 5.12
703 715 1.019278 CCACCAAATCTCACCGTCGG 61.019 60.000 10.48 10.48 0.00 4.79
704 716 1.375523 ACCAAATCTCACCGTCGGC 60.376 57.895 12.28 0.00 0.00 5.54
705 717 2.452813 CCAAATCTCACCGTCGGCG 61.453 63.158 12.28 0.29 37.95 6.46
706 718 1.445410 CAAATCTCACCGTCGGCGA 60.445 57.895 12.93 4.99 41.33 5.54
707 719 1.153823 AAATCTCACCGTCGGCGAG 60.154 57.895 20.98 20.98 41.33 5.03
708 720 3.701604 AATCTCACCGTCGGCGAGC 62.702 63.158 21.97 4.47 41.33 5.03
710 722 4.838486 CTCACCGTCGGCGAGCTC 62.838 72.222 12.93 2.73 41.33 4.09
745 757 2.351276 CGTTCCTTCCACCTGGGG 59.649 66.667 0.00 0.00 37.22 4.96
774 786 3.332393 TTCCTCTCCAGGGGCGGAT 62.332 63.158 0.00 0.00 40.80 4.18
776 788 2.812619 CCTCTCCAGGGGCGGATTC 61.813 68.421 0.00 0.00 35.89 2.52
778 790 0.470080 CTCTCCAGGGGCGGATTCTA 60.470 60.000 0.00 0.00 33.56 2.10
809 821 0.537188 TCTCCAGAGACCCAAATCGC 59.463 55.000 0.00 0.00 31.41 4.58
819 831 0.383231 CCCAAATCGCATCCTGCTTC 59.617 55.000 0.00 0.00 42.25 3.86
828 840 1.202627 GCATCCTGCTTCCTACCTCTG 60.203 57.143 0.00 0.00 40.96 3.35
836 848 3.514309 TGCTTCCTACCTCTGTTTCCTAC 59.486 47.826 0.00 0.00 0.00 3.18
885 897 8.671921 TCTAAAATTTCTAGCAAGAATCAGCTG 58.328 33.333 7.63 7.63 41.36 4.24
924 936 2.825836 CCCGCTTGTGGATCTGCC 60.826 66.667 1.22 0.00 37.10 4.85
933 945 0.747283 GTGGATCTGCCTGCTCTTGG 60.747 60.000 0.00 0.00 37.63 3.61
1008 1020 2.284190 GAGTTGTAGAAGATGGCCAGC 58.716 52.381 14.72 14.72 0.00 4.85
1029 1041 1.074405 AGAGGCAAGCTGATGTGGAAA 59.926 47.619 0.00 0.00 0.00 3.13
1030 1042 2.097825 GAGGCAAGCTGATGTGGAAAT 58.902 47.619 0.00 0.00 0.00 2.17
1031 1043 2.097825 AGGCAAGCTGATGTGGAAATC 58.902 47.619 0.00 0.00 0.00 2.17
1032 1044 1.820519 GGCAAGCTGATGTGGAAATCA 59.179 47.619 0.00 0.00 35.31 2.57
1042 1054 6.796785 TGATGTGGAAATCAGAGTCATCTA 57.203 37.500 0.00 0.00 33.22 1.98
1053 1065 8.408043 AATCAGAGTCATCTATAAGAGGTCTG 57.592 38.462 0.00 3.95 33.22 3.51
1138 1150 1.122227 AGCTGGAGAGGATGAGAAGC 58.878 55.000 0.00 0.00 0.00 3.86
1320 1332 7.360361 GGGATAACGTATTCATTGTGGATTTC 58.640 38.462 0.00 0.00 0.00 2.17
1421 1438 7.236640 AGAGTTTGAGAAGAATCTTAGACCCTT 59.763 37.037 0.00 0.00 35.54 3.95
1472 1489 6.575244 TTGGGTCAGGATCATAAACATACT 57.425 37.500 0.00 0.00 0.00 2.12
1558 2191 2.900122 AGATGTTGACGAATTTGGCG 57.100 45.000 0.00 0.00 0.00 5.69
2054 2687 8.103305 TCTTTTTACAAGTCAAGCTCAGGATAT 58.897 33.333 0.00 0.00 0.00 1.63
2065 2698 7.928706 GTCAAGCTCAGGATATAAGTGTAACAT 59.071 37.037 0.00 0.00 41.43 2.71
2121 2754 1.603802 CGTCAACAACAATCAGGCACT 59.396 47.619 0.00 0.00 43.88 4.40
2235 2868 4.272489 CATCAAACCTTATGGAGCTGGAA 58.728 43.478 0.81 0.00 37.04 3.53
2431 3064 1.537562 GCAGCATAGCCCAGAATTTGC 60.538 52.381 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.062293 CAATCACACCGTCTTCCAGTTTA 58.938 43.478 0.00 0.00 0.00 2.01
2 3 2.494059 CAATCACACCGTCTTCCAGTT 58.506 47.619 0.00 0.00 0.00 3.16
3 4 1.878102 GCAATCACACCGTCTTCCAGT 60.878 52.381 0.00 0.00 0.00 4.00
4 5 0.798776 GCAATCACACCGTCTTCCAG 59.201 55.000 0.00 0.00 0.00 3.86
5 6 0.605319 GGCAATCACACCGTCTTCCA 60.605 55.000 0.00 0.00 0.00 3.53
6 7 0.321653 AGGCAATCACACCGTCTTCC 60.322 55.000 0.00 0.00 0.00 3.46
7 8 0.798776 CAGGCAATCACACCGTCTTC 59.201 55.000 0.00 0.00 0.00 2.87
8 9 0.606401 CCAGGCAATCACACCGTCTT 60.606 55.000 0.00 0.00 0.00 3.01
9 10 1.003355 CCAGGCAATCACACCGTCT 60.003 57.895 0.00 0.00 0.00 4.18
10 11 1.003839 TCCAGGCAATCACACCGTC 60.004 57.895 0.00 0.00 0.00 4.79
11 12 1.003355 CTCCAGGCAATCACACCGT 60.003 57.895 0.00 0.00 0.00 4.83
12 13 0.107508 ATCTCCAGGCAATCACACCG 60.108 55.000 0.00 0.00 0.00 4.94
13 14 1.386533 CATCTCCAGGCAATCACACC 58.613 55.000 0.00 0.00 0.00 4.16
14 15 1.386533 CCATCTCCAGGCAATCACAC 58.613 55.000 0.00 0.00 0.00 3.82
15 16 0.256752 CCCATCTCCAGGCAATCACA 59.743 55.000 0.00 0.00 0.00 3.58
16 17 0.466922 CCCCATCTCCAGGCAATCAC 60.467 60.000 0.00 0.00 0.00 3.06
17 18 1.648302 CCCCCATCTCCAGGCAATCA 61.648 60.000 0.00 0.00 0.00 2.57
18 19 1.152368 CCCCCATCTCCAGGCAATC 59.848 63.158 0.00 0.00 0.00 2.67
19 20 3.078843 GCCCCCATCTCCAGGCAAT 62.079 63.158 0.00 0.00 45.07 3.56
20 21 3.743017 GCCCCCATCTCCAGGCAA 61.743 66.667 0.00 0.00 45.07 4.52
24 25 3.801997 AAGCGCCCCCATCTCCAG 61.802 66.667 2.29 0.00 0.00 3.86
25 26 4.113815 CAAGCGCCCCCATCTCCA 62.114 66.667 2.29 0.00 0.00 3.86
26 27 4.883354 CCAAGCGCCCCCATCTCC 62.883 72.222 2.29 0.00 0.00 3.71
30 31 4.783501 AATGCCAAGCGCCCCCAT 62.784 61.111 2.29 0.00 36.24 4.00
33 34 3.360956 CTTGAATGCCAAGCGCCCC 62.361 63.158 2.29 0.00 44.90 5.80
34 35 2.182537 CTTGAATGCCAAGCGCCC 59.817 61.111 2.29 0.00 44.90 6.13
40 41 2.819608 GCTAACAGGTCTTGAATGCCAA 59.180 45.455 0.00 0.00 0.00 4.52
41 42 2.436417 GCTAACAGGTCTTGAATGCCA 58.564 47.619 0.00 0.00 0.00 4.92
42 43 1.745653 GGCTAACAGGTCTTGAATGCC 59.254 52.381 0.00 0.00 34.07 4.40
43 44 1.398390 CGGCTAACAGGTCTTGAATGC 59.602 52.381 0.00 0.00 0.00 3.56
44 45 1.398390 GCGGCTAACAGGTCTTGAATG 59.602 52.381 0.00 0.00 0.00 2.67
45 46 1.279271 AGCGGCTAACAGGTCTTGAAT 59.721 47.619 0.00 0.00 0.00 2.57
46 47 0.685097 AGCGGCTAACAGGTCTTGAA 59.315 50.000 0.00 0.00 0.00 2.69
47 48 0.685097 AAGCGGCTAACAGGTCTTGA 59.315 50.000 1.35 0.00 0.00 3.02
48 49 1.079503 GAAGCGGCTAACAGGTCTTG 58.920 55.000 1.35 0.00 0.00 3.02
49 50 0.389948 CGAAGCGGCTAACAGGTCTT 60.390 55.000 1.35 0.00 0.00 3.01
50 51 1.215647 CGAAGCGGCTAACAGGTCT 59.784 57.895 1.35 0.00 0.00 3.85
51 52 3.782042 CGAAGCGGCTAACAGGTC 58.218 61.111 1.35 0.00 0.00 3.85
69 70 2.152699 CGTAGGCGCAGAGTTCACG 61.153 63.158 10.83 3.47 0.00 4.35
70 71 1.071567 GTCGTAGGCGCAGAGTTCAC 61.072 60.000 10.83 0.00 38.14 3.18
71 72 1.211969 GTCGTAGGCGCAGAGTTCA 59.788 57.895 10.83 0.00 38.14 3.18
72 73 4.074454 GTCGTAGGCGCAGAGTTC 57.926 61.111 10.83 0.00 38.14 3.01
81 82 2.102553 GCCAGAGTCGTCGTAGGC 59.897 66.667 0.00 0.00 34.39 3.93
82 83 0.745128 AGAGCCAGAGTCGTCGTAGG 60.745 60.000 0.00 0.00 0.00 3.18
83 84 1.088306 AAGAGCCAGAGTCGTCGTAG 58.912 55.000 0.00 0.00 0.00 3.51
84 85 1.531423 AAAGAGCCAGAGTCGTCGTA 58.469 50.000 0.00 0.00 0.00 3.43
85 86 0.674534 AAAAGAGCCAGAGTCGTCGT 59.325 50.000 0.00 0.00 0.00 4.34
86 87 1.063806 CAAAAGAGCCAGAGTCGTCG 58.936 55.000 0.00 0.00 0.00 5.12
87 88 1.433534 CCAAAAGAGCCAGAGTCGTC 58.566 55.000 0.00 0.00 0.00 4.20
88 89 0.603975 GCCAAAAGAGCCAGAGTCGT 60.604 55.000 0.00 0.00 0.00 4.34
89 90 1.630244 CGCCAAAAGAGCCAGAGTCG 61.630 60.000 0.00 0.00 0.00 4.18
90 91 1.916697 GCGCCAAAAGAGCCAGAGTC 61.917 60.000 0.00 0.00 34.80 3.36
91 92 1.968540 GCGCCAAAAGAGCCAGAGT 60.969 57.895 0.00 0.00 34.80 3.24
92 93 1.968017 TGCGCCAAAAGAGCCAGAG 60.968 57.895 4.18 0.00 41.23 3.35
93 94 2.112928 TGCGCCAAAAGAGCCAGA 59.887 55.556 4.18 0.00 41.23 3.86
94 95 2.256461 GTGCGCCAAAAGAGCCAG 59.744 61.111 4.18 0.00 41.23 4.85
95 96 3.294493 GGTGCGCCAAAAGAGCCA 61.294 61.111 12.58 0.00 41.23 4.75
96 97 2.982744 GAGGTGCGCCAAAAGAGCC 61.983 63.158 20.59 0.00 41.23 4.70
97 98 2.192608 CTGAGGTGCGCCAAAAGAGC 62.193 60.000 20.59 0.00 42.46 4.09
98 99 0.603707 TCTGAGGTGCGCCAAAAGAG 60.604 55.000 20.59 6.40 37.19 2.85
99 100 0.036732 ATCTGAGGTGCGCCAAAAGA 59.963 50.000 20.59 17.46 37.19 2.52
100 101 0.449388 GATCTGAGGTGCGCCAAAAG 59.551 55.000 20.59 12.53 37.19 2.27
101 102 1.298157 CGATCTGAGGTGCGCCAAAA 61.298 55.000 20.59 1.95 37.19 2.44
102 103 1.741401 CGATCTGAGGTGCGCCAAA 60.741 57.895 20.59 4.79 37.19 3.28
103 104 2.125552 CGATCTGAGGTGCGCCAA 60.126 61.111 20.59 5.20 37.19 4.52
104 105 4.147449 CCGATCTGAGGTGCGCCA 62.147 66.667 20.59 0.00 37.19 5.69
107 108 4.899239 GGGCCGATCTGAGGTGCG 62.899 72.222 0.00 0.00 0.00 5.34
108 109 4.554036 GGGGCCGATCTGAGGTGC 62.554 72.222 0.00 0.00 0.00 5.01
109 110 4.227134 CGGGGCCGATCTGAGGTG 62.227 72.222 0.00 0.00 42.83 4.00
129 130 1.216178 CCGGGCAATTTCAAGGCAG 59.784 57.895 0.00 0.00 0.00 4.85
136 137 4.174129 CGCGGTCCGGGCAATTTC 62.174 66.667 16.04 0.00 32.44 2.17
145 146 3.011760 GCAAAGAACTCGCGGTCCG 62.012 63.158 6.99 6.99 38.61 4.79
192 193 0.527565 ATTTTAGCAGGGCAGCAACG 59.472 50.000 0.00 0.00 36.85 4.10
194 195 2.246469 TGAATTTTAGCAGGGCAGCAA 58.754 42.857 0.00 0.00 36.85 3.91
195 196 1.921982 TGAATTTTAGCAGGGCAGCA 58.078 45.000 0.00 0.00 36.85 4.41
197 198 6.395426 TCAATATGAATTTTAGCAGGGCAG 57.605 37.500 0.00 0.00 0.00 4.85
198 199 6.982160 ATCAATATGAATTTTAGCAGGGCA 57.018 33.333 0.00 0.00 0.00 5.36
199 200 6.146673 GCAATCAATATGAATTTTAGCAGGGC 59.853 38.462 0.00 0.00 0.00 5.19
200 201 7.384115 CAGCAATCAATATGAATTTTAGCAGGG 59.616 37.037 0.00 0.00 0.00 4.45
201 202 7.095774 GCAGCAATCAATATGAATTTTAGCAGG 60.096 37.037 0.00 0.00 0.00 4.85
207 212 6.053005 CAGGGCAGCAATCAATATGAATTTT 58.947 36.000 0.00 0.00 0.00 1.82
220 225 1.987807 ATACCGAGCAGGGCAGCAAT 61.988 55.000 0.00 0.00 46.96 3.56
231 236 0.941463 CATCGCCTGACATACCGAGC 60.941 60.000 0.00 0.00 32.86 5.03
232 237 0.941463 GCATCGCCTGACATACCGAG 60.941 60.000 0.00 0.00 32.86 4.63
233 238 1.067416 GCATCGCCTGACATACCGA 59.933 57.895 0.00 0.00 0.00 4.69
247 252 1.275856 TGCTTGGACAAATTGGGCATC 59.724 47.619 0.00 0.00 0.00 3.91
273 278 6.568653 GCAGCACATCGACTACTGATCTATTA 60.569 42.308 9.91 0.00 0.00 0.98
293 305 1.479730 TCCAATTGTGTTTGTGCAGCA 59.520 42.857 4.43 0.00 0.00 4.41
297 309 3.742369 CCTTGATCCAATTGTGTTTGTGC 59.258 43.478 4.43 0.00 0.00 4.57
304 316 3.501828 TGAACGTCCTTGATCCAATTGTG 59.498 43.478 4.43 0.00 0.00 3.33
315 327 7.597369 TCGGATATATTATGTTGAACGTCCTTG 59.403 37.037 0.00 0.00 0.00 3.61
353 365 9.236006 GCAGTCACCATATGAATATAAAATCCT 57.764 33.333 3.65 0.00 39.72 3.24
361 373 7.120285 GCACAATAGCAGTCACCATATGAATAT 59.880 37.037 3.65 0.00 39.72 1.28
365 377 4.129380 GCACAATAGCAGTCACCATATGA 58.871 43.478 3.65 0.00 33.79 2.15
369 381 2.636830 GAGCACAATAGCAGTCACCAT 58.363 47.619 0.00 0.00 36.85 3.55
389 401 3.564644 GTCCTGATCAAGATGAATGCTGG 59.435 47.826 0.00 0.00 0.00 4.85
423 435 6.316390 GGTACTCGATGAACTTCCATCAAATT 59.684 38.462 0.00 0.00 42.21 1.82
428 440 3.181489 ACGGTACTCGATGAACTTCCATC 60.181 47.826 10.17 0.00 42.43 3.51
446 458 0.807496 GCTGGTCGAGTAGTTACGGT 59.193 55.000 0.00 0.00 0.00 4.83
488 500 4.680237 TCGACCGTTGCAGCCCAG 62.680 66.667 0.00 0.00 0.00 4.45
490 502 1.862602 AAATTCGACCGTTGCAGCCC 61.863 55.000 0.00 0.00 0.00 5.19
541 553 4.887655 ACTGAAGGAAAAACTTGTACCCTG 59.112 41.667 0.00 0.00 0.00 4.45
547 559 4.095932 GGAACGACTGAAGGAAAAACTTGT 59.904 41.667 0.00 0.00 0.00 3.16
557 569 3.386768 TCAAGAAGGAACGACTGAAGG 57.613 47.619 0.00 0.00 0.00 3.46
558 570 5.955488 TCTATCAAGAAGGAACGACTGAAG 58.045 41.667 0.00 0.00 0.00 3.02
560 572 5.977489 TTCTATCAAGAAGGAACGACTGA 57.023 39.130 0.00 0.00 36.80 3.41
565 577 6.546395 CACCAAATTCTATCAAGAAGGAACG 58.454 40.000 0.00 0.00 44.79 3.95
628 640 9.994432 CGACTTGAAGCAATTTTAAGAATAGAT 57.006 29.630 0.00 0.00 36.26 1.98
629 641 8.450964 CCGACTTGAAGCAATTTTAAGAATAGA 58.549 33.333 0.00 0.00 36.26 1.98
630 642 8.450964 TCCGACTTGAAGCAATTTTAAGAATAG 58.549 33.333 0.00 0.00 36.26 1.73
631 643 8.330466 TCCGACTTGAAGCAATTTTAAGAATA 57.670 30.769 0.00 0.00 36.26 1.75
632 644 7.174946 TCTCCGACTTGAAGCAATTTTAAGAAT 59.825 33.333 0.00 0.00 36.26 2.40
633 645 6.485313 TCTCCGACTTGAAGCAATTTTAAGAA 59.515 34.615 0.00 0.00 36.26 2.52
634 646 5.995282 TCTCCGACTTGAAGCAATTTTAAGA 59.005 36.000 0.00 0.00 36.26 2.10
635 647 6.241207 TCTCCGACTTGAAGCAATTTTAAG 57.759 37.500 0.00 0.00 38.12 1.85
636 648 5.181245 CCTCTCCGACTTGAAGCAATTTTAA 59.819 40.000 0.00 0.00 0.00 1.52
637 649 4.695455 CCTCTCCGACTTGAAGCAATTTTA 59.305 41.667 0.00 0.00 0.00 1.52
638 650 3.503748 CCTCTCCGACTTGAAGCAATTTT 59.496 43.478 0.00 0.00 0.00 1.82
639 651 3.077359 CCTCTCCGACTTGAAGCAATTT 58.923 45.455 0.00 0.00 0.00 1.82
640 652 2.704572 CCTCTCCGACTTGAAGCAATT 58.295 47.619 0.00 0.00 0.00 2.32
641 653 1.677217 GCCTCTCCGACTTGAAGCAAT 60.677 52.381 0.00 0.00 0.00 3.56
642 654 0.320771 GCCTCTCCGACTTGAAGCAA 60.321 55.000 0.00 0.00 0.00 3.91
643 655 1.293498 GCCTCTCCGACTTGAAGCA 59.707 57.895 0.00 0.00 0.00 3.91
644 656 1.807573 CGCCTCTCCGACTTGAAGC 60.808 63.158 0.00 0.00 0.00 3.86
645 657 0.456995 GACGCCTCTCCGACTTGAAG 60.457 60.000 0.00 0.00 0.00 3.02
646 658 1.585006 GACGCCTCTCCGACTTGAA 59.415 57.895 0.00 0.00 0.00 2.69
647 659 2.687805 CGACGCCTCTCCGACTTGA 61.688 63.158 0.00 0.00 0.00 3.02
648 660 2.202492 CGACGCCTCTCCGACTTG 60.202 66.667 0.00 0.00 0.00 3.16
649 661 2.359602 TCGACGCCTCTCCGACTT 60.360 61.111 0.00 0.00 0.00 3.01
650 662 2.820479 CTCGACGCCTCTCCGACT 60.820 66.667 0.00 0.00 0.00 4.18
651 663 2.815298 CTCTCGACGCCTCTCCGAC 61.815 68.421 0.00 0.00 0.00 4.79
652 664 2.511829 CTCTCGACGCCTCTCCGA 60.512 66.667 0.00 0.00 0.00 4.55
653 665 2.511829 TCTCTCGACGCCTCTCCG 60.512 66.667 0.00 0.00 0.00 4.63
654 666 1.027792 AAGTCTCTCGACGCCTCTCC 61.028 60.000 0.00 0.00 44.93 3.71
655 667 0.375803 GAAGTCTCTCGACGCCTCTC 59.624 60.000 0.00 0.00 44.93 3.20
656 668 1.027792 GGAAGTCTCTCGACGCCTCT 61.028 60.000 0.00 0.00 44.93 3.69
657 669 1.306642 TGGAAGTCTCTCGACGCCTC 61.307 60.000 0.00 0.00 44.93 4.70
658 670 1.303398 TGGAAGTCTCTCGACGCCT 60.303 57.895 0.00 0.00 44.93 5.52
659 671 1.137825 CTGGAAGTCTCTCGACGCC 59.862 63.158 0.00 0.00 44.93 5.68
660 672 1.515304 GCTGGAAGTCTCTCGACGC 60.515 63.158 0.00 0.00 44.93 5.19
661 673 1.226156 CGCTGGAAGTCTCTCGACG 60.226 63.158 0.00 0.00 44.93 5.12
662 674 0.522180 TTCGCTGGAAGTCTCTCGAC 59.478 55.000 0.00 0.00 40.54 4.20
663 675 1.244816 TTTCGCTGGAAGTCTCTCGA 58.755 50.000 0.00 0.00 35.30 4.04
664 676 2.189342 GATTTCGCTGGAAGTCTCTCG 58.811 52.381 0.00 0.00 36.34 4.04
665 677 2.093973 TGGATTTCGCTGGAAGTCTCTC 60.094 50.000 0.49 0.00 38.54 3.20
666 678 1.902508 TGGATTTCGCTGGAAGTCTCT 59.097 47.619 0.49 0.00 38.54 3.10
667 679 2.003301 GTGGATTTCGCTGGAAGTCTC 58.997 52.381 0.49 0.00 38.54 3.36
668 680 1.339151 GGTGGATTTCGCTGGAAGTCT 60.339 52.381 0.49 0.00 38.54 3.24
669 681 1.087501 GGTGGATTTCGCTGGAAGTC 58.912 55.000 0.00 0.00 37.97 3.01
670 682 0.400213 TGGTGGATTTCGCTGGAAGT 59.600 50.000 0.00 0.00 35.30 3.01
671 683 1.533625 TTGGTGGATTTCGCTGGAAG 58.466 50.000 0.00 0.00 32.80 3.46
672 684 1.988293 TTTGGTGGATTTCGCTGGAA 58.012 45.000 0.00 0.00 0.00 3.53
673 685 2.091541 GATTTGGTGGATTTCGCTGGA 58.908 47.619 0.00 0.00 0.00 3.86
674 686 2.094675 AGATTTGGTGGATTTCGCTGG 58.905 47.619 0.00 0.00 0.00 4.85
675 687 2.749076 TGAGATTTGGTGGATTTCGCTG 59.251 45.455 0.00 0.00 0.00 5.18
676 688 2.749621 GTGAGATTTGGTGGATTTCGCT 59.250 45.455 0.00 0.00 0.00 4.93
677 689 2.159379 GGTGAGATTTGGTGGATTTCGC 60.159 50.000 0.00 0.00 0.00 4.70
678 690 2.095853 CGGTGAGATTTGGTGGATTTCG 59.904 50.000 0.00 0.00 0.00 3.46
679 691 3.081804 ACGGTGAGATTTGGTGGATTTC 58.918 45.455 0.00 0.00 0.00 2.17
680 692 3.081804 GACGGTGAGATTTGGTGGATTT 58.918 45.455 0.00 0.00 0.00 2.17
681 693 2.711542 GACGGTGAGATTTGGTGGATT 58.288 47.619 0.00 0.00 0.00 3.01
682 694 1.405526 CGACGGTGAGATTTGGTGGAT 60.406 52.381 0.00 0.00 0.00 3.41
683 695 0.037697 CGACGGTGAGATTTGGTGGA 60.038 55.000 0.00 0.00 0.00 4.02
684 696 1.019278 CCGACGGTGAGATTTGGTGG 61.019 60.000 5.48 0.00 0.00 4.61
685 697 1.635663 GCCGACGGTGAGATTTGGTG 61.636 60.000 16.73 0.00 0.00 4.17
686 698 1.375523 GCCGACGGTGAGATTTGGT 60.376 57.895 16.73 0.00 0.00 3.67
687 699 2.452813 CGCCGACGGTGAGATTTGG 61.453 63.158 22.98 0.00 34.74 3.28
688 700 1.445410 TCGCCGACGGTGAGATTTG 60.445 57.895 25.70 1.14 37.29 2.32
689 701 2.967397 TCGCCGACGGTGAGATTT 59.033 55.556 25.70 0.00 37.29 2.17
725 737 2.742372 CAGGTGGAAGGAACGCCG 60.742 66.667 0.00 0.00 43.18 6.46
745 757 3.028130 CTGGAGAGGAAGGAGGTTACTC 58.972 54.545 0.00 0.00 45.74 2.59
774 786 1.406887 GGAGACCCTGCGCAAATAGAA 60.407 52.381 13.05 0.00 0.00 2.10
776 788 0.107703 TGGAGACCCTGCGCAAATAG 60.108 55.000 13.05 0.00 0.00 1.73
778 790 1.377725 CTGGAGACCCTGCGCAAAT 60.378 57.895 13.05 0.00 0.00 2.32
809 821 2.114616 ACAGAGGTAGGAAGCAGGATG 58.885 52.381 0.00 0.00 40.87 3.51
819 831 3.197983 CCTTGGTAGGAAACAGAGGTAGG 59.802 52.174 0.00 0.00 45.05 3.18
836 848 3.445096 CAGGAAAGCAAATCCTACCTTGG 59.555 47.826 4.83 0.00 45.59 3.61
900 912 3.966543 CCACAAGCGGGTTCCCCT 61.967 66.667 1.93 0.00 42.67 4.79
907 919 2.825836 GGCAGATCCACAAGCGGG 60.826 66.667 0.00 0.00 34.01 6.13
924 936 0.600057 GAAAGGCCAACCAAGAGCAG 59.400 55.000 5.01 0.00 39.06 4.24
933 945 1.471829 CCCCACCAAGAAAGGCCAAC 61.472 60.000 5.01 0.00 0.00 3.77
1008 1020 0.035725 TCCACATCAGCTTGCCTCTG 60.036 55.000 0.00 0.00 0.00 3.35
1029 1041 6.947733 CCAGACCTCTTATAGATGACTCTGAT 59.052 42.308 0.00 0.00 32.66 2.90
1030 1042 6.303054 CCAGACCTCTTATAGATGACTCTGA 58.697 44.000 0.00 0.00 32.66 3.27
1031 1043 5.476599 CCCAGACCTCTTATAGATGACTCTG 59.523 48.000 0.00 0.00 32.66 3.35
1032 1044 5.135362 ACCCAGACCTCTTATAGATGACTCT 59.865 44.000 0.00 0.00 35.39 3.24
1039 1051 3.052869 TCTGCACCCAGACCTCTTATAGA 60.053 47.826 0.00 0.00 42.98 1.98
1042 1054 2.254152 TCTGCACCCAGACCTCTTAT 57.746 50.000 0.00 0.00 42.98 1.73
1053 1065 1.995376 TCTTCCCTTTTTCTGCACCC 58.005 50.000 0.00 0.00 0.00 4.61
1259 1271 2.137810 TAGCCCTTTTGGATTTCCCG 57.862 50.000 0.00 0.00 44.07 5.14
1320 1332 1.081892 CTTTGTCTGCCTCCGTCATG 58.918 55.000 0.00 0.00 0.00 3.07
1421 1438 4.378356 GCATTGACTCAAAACGCACATCTA 60.378 41.667 0.00 0.00 0.00 1.98
1558 2191 6.091986 GCTCTAAGATATTTACCTGCAGCATC 59.908 42.308 8.66 3.67 0.00 3.91
1938 2571 5.501156 GACACTTCTCCTGGGATACATTTT 58.499 41.667 0.00 0.00 39.74 1.82
2054 2687 6.928348 TCCTCTTCCTTCATGTTACACTTA 57.072 37.500 0.00 0.00 0.00 2.24
2065 2698 1.349026 CAGTGGCTTCCTCTTCCTTCA 59.651 52.381 0.00 0.00 0.00 3.02
2097 2730 2.550606 GCCTGATTGTTGTTGACGGTTA 59.449 45.455 0.00 0.00 0.00 2.85
2235 2868 1.000396 GCCCTCTGCATCCCTTTGT 60.000 57.895 0.00 0.00 40.77 2.83
2258 2891 7.423844 AAGGAGAGTTCCATCTTTTGTTTTT 57.576 32.000 0.00 0.00 46.64 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.