>input_sequence_61681
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---------------------------------------------------ATGGCCAGCAGAGGCAAGCTGATGTGGAA
ATCAGAGTCATCTATAAGAGGTCTGGGTGCAGAAAAAGGGAAGAATGCAGATGAAGAAGTGACAGCAAAATTCAGAAAGT
TGAACCTGGCAGCTGGAGAGGATGAGAAGCTGATAATGTCAGATGATGAGGAAGATGAAGATGAACCAAAAGTCTTCTCT
GTTATCGGTAAAGTCTTATCTCCAAGCACTCTTCAATTGCAGACTATCATGGGAGCTATGAAACCAGCTTCGGGAAATCC
AAAAGGGCTAAGAGCAAGAATGGTGGGGGATAACGTATTCATTGTGGATTTCATGACGGAGGCAGACAAAGAGAGGGCAC
TAGATGGAACCCCA-----TGGCTTGTAGGGCGCCATGCAGTGCTCTTGAAAGAGTTTGAGAAGAATCTTAGACCCTTAG
ATGTGCGTTTTGAGTCAATGCATATTTGGGTCAGGATCATAAACATACT-------------------------------
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-------------------------TTTTAAGTGGATGAACAAAAAGAAAGGATGGAAGGTAGCGGGTCTTGCAGGCAAA
GTTGATAAATTAGATGTTGACGAATTTGGCGATGCTGCAGGTAAATATCTTAGAGCAAGAGTGGAAATCCCAATTGAGAA
ACCATTGAAGAGGTATATCACAATTGAAACTTCAGAAGGTGATGAATACTACGATCTACAATATGAGAAGTTGCCTTTCT
TCTGCTTCTCATGTGGCATTATGGGGCATTCTGAATTAGAATGTCAAAACCCTTCAGGAAGAGATGCAGAAGGTAAATGG
GAATATGATAATTCAATAAGAGCCCCAGAAGAGAGGAGGAGGAGAATTCAATCCTTTGCACAAGCAGCGGCAACTTCAGA
TTGGAGTGGATCTTCATACCGAAGTGATTCTCATTCCAGTTCTAAAGGAAAATCCACGGAGCAATCTAATAGTCAGACCT
TTGAGAAGGAAAAATGTATCCCAGGAGAAGTGTCGAGCCCTTCGGAGAAAATGGGCATAGGTAAGGGTGGAGGTGTCCAA
AATAGCAACACTTGCATGACTCTTTTTACAAGTCAAGCTCAGGATATAAGTGTAACATGA--------------------
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>chr1A_1_TraesCS1A01G332700
TAAACTGGAAGACGGTGTGATTGCCTGGAGATGGGGGCGCTTGGCATTCAAGACCTGTTAGCCGCTTCGCGTGAACTCTG
CGCCTACGACGACTCTGGCTCTTTTGGCGCACCTCAGATCGGCCCCGGGCTGCCTTGAAATTGCCCGGACCGCGAGTTCT
TTGCCTCGGCAACTATCGTCATTATCCGCAATCGTTGCTGCCC----TGCTAAAATTCATATTGATTGCTGCCCTGCTCG
GTATGTCAGGCGATGCCCAATTTGTCCAAGCACTCCAT-------AATAGATCAGTAGTCGATGTGCTGCACAAACACAA
TTGGATCAAGGACGTTCAACATAATATATCCGATTAAGTTGTGAAGGATTTTATATTCATATGGTGACTGCTATTGTGCT
CCAGCATTCATCTTGATCAGGACATCCCATGCACAATTTGATGGAAGTTCATCGAGTACCGTAACTACTCGACCAGCTCG
GCTTACCACATCCAACACACTGGGCTGCAACGGTCGAATTTTCGATGCATTTTGTAGTCCGCATGGGCCCCGCAGGGTAC
AAGTTTTTCCTTCAGTCGTTCCTTCTTGATAGAATTTGGTGCACGAATCTGCTAATGAGACGGCGACGCTGGCAAAAAAA
TCTATTCTTAAAATTGCTTCAAGTCGGAGAGGCGTCGAGAGACTTCCAGCGAAATCCACCAAATCTCACCGTCGGCGAGC
TCCCGCCGCCGGCGTCCGGCGTTCCTTCCACCTGGGGAGTAACCTCCTTCCTCTCCAGGGGCGGATTCTATTTGCGCAGG
GTCTCCAGAGACCCAAATCGCATCCTGCTTCCTACCTCTGTTTCCTACCAAGGTAGGATTTGCTTTCCTGTCTAAAATTT
CTAGCAAGAATCAGCTGATTCGGGGCAAAAAAGGGGAACCCGCTTGTGGATCTGCCTGCTCTTGGTTGGCCTTTCTTGGT
GGGGATTGGTAGCAGGATCTGACATTGACTGCGATTTTTGAGTTGTAGAAGATGGCCAGCAGAGGCAAGCTGATGTGGAA
ATCAGAGTCATCTATAAGAGGTCTGGGTGCAGAAAAAGGGAAGAATGCAGATGAAGAAGTGACAGCAAAATTCAGAAAGT
TGAACCTGGCAGCTGGAGAGGATGAGAAGCTGATAATGTCAGATGATGAGGAAGATGAAGATGAACCAAAAGTCTTCTCT
GTTATCGGTAAAGTCTTATCTCCAAGCACTCTTCAATTGCAGACTATCATGGGAGCTATGAAACCAGCTTCGGGAAATCC
AAAAGGGCTAAGAGCAAGAATGGTGGGGGATAACGTATTCATTGTGGATTTCATGACGGAGGCAGACAAAGAGAGGGCAC
TAGATGGAACCCCA-----TGGCTTGTAGGGCGCCATGCAGTGCTCTTGAAAGAGTTTGAGAAGAATCTTAGACCCTTAG
ATGTGCGTTTTGAGTCAATGCATATTTGGGTCAGGATCATAAACATACT-------------------------------
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-------------------------TTTTAAGTGGATGAACAAAAAGAAAGGATGGAAGGTAGCGGGTCTTGCAGGCAAA
GTTGATAAATTAGATGTTGACGAATTTGGCGATGCTGCAGGTAAATATCTTAGAGCAAGAGTGGAAATCCCAATTGAGAA
ACCATTGAAGAGGTATATCACAATTGAAACTTCAGAAGGTGATGAATACTACGATCTACAATATGAGAAGTTGCCTTTCT
TCTGCTTCTCATGTGGCATTATGGGGCATTCTGAATTAGAATGTCAAAACCCTTCAGGAAGAGATGCAGAAGGTAAATGG
GAATATGATAATTCAATAAGAGCCCCAGAAGAGAGGAGGAGGAGAATTCAATCCTTTGCACAAGCAGCGGCAACTTCAGA
TTGGAGTGGATCTTCATACCGAAGTGATTCTCATTCCAGTTCTAAAGGAAAATCCACGGAGCAATCTAATAGTCAGACCT
TTGAGAAGGAAAAATGTATCCCAGGAGAAGTGTCGAGCCCTTCGGAGAAAATGGGCATAGGTAAGGGTGGAGGTGTCCAA
AATAGCAACACTTGCATGACTCTTTTTACAAGTCAAGCTCAGGATATAAGTGTAACATGAAGGAAGAGGAAGCCACTGAA
AAACAGTAATAACCGTCAACAACAATCAGGCACTGTGGCAGAAAAAAATTGGATGTTGGAGAATGAAGGAAACTTAGTGA
CAGTCCCTGTTCGAGGAATAGATGAATTACCTAGAGAGTCCGGCCCATCAAACCTTATGGAGCTGGAACAAAGGGATGCA
GAGGGCGCCAAAAAACAAAAGATGGAACTCTCCTTATCAAATGCACTATCGGCGGAGGCTGCTTATGTGGAGCAGCCCCG
CCGGTCACAATGAAAACCTTATGCTTGAACTGCCGCGGGTGTGGGCAGCCCGAGGCAGTTCAGGAGCTCCGCCTTCTGGT
GGAGCAGCATAGCCCAGAATTTGCCTTCCTCTCGGAGACAAAGATGTCTGAAGAAAGAGCAAAGAATCTGAGATTTAAAT
TGGGGTTTGATAATGCGA------TAAGTAGTGAAGGGTTAAGTGGAGGACTAGTTCTCATGTGGAAAAAGGGTATTATA
GTGAGGGAACAAACC-AAAAATAATTCTCACATAGATGTCACTGTCTTCAG-GAGAACTTGGGAGAAGAATGGAGATTTA
CAGGCTTTTATGGCCAACCACGAAGTCAAAAAAGGAAAGAATCATGGTATTTGCTTCAATTTCTAAGATGTGCAAGTGAT
TTACCCTGGCTATGTGCGGGAGACTTTAATGAAGTATTAGAAGAAGAGGAGCATTTTGGCTATAAGGAGAGAGGGGAATG
GAGAATGTCTGGATTTAGAGAGGTAGTCCAAATGTGTGGCCTCTCAGATTTAGGCTATACAGGGCTCCCATATACATGGG
ACAATAGACAAGAAGGAGGAAAGAACATCAAAGTTCG------------GCTGGCTGGTGAGAAA-------------TT
TTTGCAGAAATATGGGGTTATAAAAGTGTTACATTTGCAAACCACAGAATCTGATCATTGTGCATTGCTAATAGATATTG
ACCAACAACAGCAAGGCGAAAAGGTGAAAGCAAAGAAAATGTTCCGGTATGAA
>chrUn_117
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------------------------------------GATCGGCCCCGGGGTGCCTTCAGATTGCCTGGACCGCGAGTTCT
TTGCCTCGGCAACTATCGTCATTATCAGCAATGGCAGACAGGCCTCGTGCTGAAATTCATATTGGTTGCTGCCCTAGACG
GTATGTCAGGCAATGCCCAATTTGTCCAAGCACTCCAGGAGGAAGAATAGATCAGTAGTCGATGCGCTTCACAAATACAA
TTGGATTAAGGACGTTCGACACACTATATCCAATTAAGTTGTGAGGGATTTTCTATCCATCTGGTGATTGCTATTGCGCT
TCAGCATTCATCTTGATCAGGACATCCCATGCACCATTTTATGGAAGTTCACTGAGTCCCGCAACTACTCGACCAGCTCG
GCTTACCACATCCAACACATTAGGCTGCAACAGTCGAATTTTCGATGCATTTTGTAGTCCGCATGGGCCCCGTAGGGTGC
AAGTTTTTTTTCCAGTTGTTCCTTCTTGATAGAATTTGGTGCACGAATCTGCTAATGAGGCGGTGGCGCTGGC-------
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>chr7A_721
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-----------GCGTCTGGCGTTCCTTCCACCTGGGAAGTAACCTCCTTCCTCTCCAGGGGCGGACTATGTTTGCGCAGG
GTCTCCAGAGACCCAAATCAAATCCTGCTTTCTACCTCTATTTCCTATCAAGGTAGGGTTTGCTTTCCTGTCTAAAATTT
CTAGCAAGAATCAGCTAATTCGGGGCAAAAAGGGGGAATCCGCTTGTGGATCTGCATGCTCTTGCTTGGCCTTTCTTGGT
GGGGATTGGTAGCAGGATCTGACATTGACTGCGATTTTTGAGTTGTAGAAGATGGCCAGAAGAGGCAAGCTGATGTGGAA
----GAGTCAACTGTAAGAGGTCTAGGTGCAGAAAAAGGGAAGAATGCAGATGAAGAAGTGACAGCAAAATTCAGAAAGT
TGAACCTGGCAGCTGGAGAGGATGAGAAGATGATAATGTCAGATGATGAGGAAGATGAAGATGAACCAAAAGTCTTCTCT
GTTATCGGTAAAGTCTTATCTCCAAGCACTCTTCAATTGCAGACTATCGTGGGAGCTATGAAACCAGCTTGGGGAAATCC
AAAAGGGCTAAGAGCAAGAATGGTGGGGGATAACATATTCATTGTGGATTTTATGACAGAGGCAGACAAAGAGAGGGCAC
TAGATGGAACCCCA-----TGGCTTGTAGGGCGCCATGTAGCGCTTTTGAAAGAGTTTGAAAAGAATCTTAGACCCTCAG
ATGTGCGTTTTGAGTCAATGCATATTTAGGTCAGGATCATAAACAT----------------------------------
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----------------------ACCTTTTAAGTGGATGAACAAAAAGAAAGGATGGAAGGTAGCGGGTCTTGCAGGCAAA
GTTGATAAATTAGATGTTGAC--------------TGCAGGTAAATATCTTAGAGAAAGAGTGGAAAACCTAGTTGAGAA
ACCATTGAAGAGGTATATCACAACTGAAACTTCAGAAGGTGATGAATACTATGATCTACAATATGAGAAGTTGCCTTTCT
TCTGCTTCTCATGTGGCATTATGGGGCATTCTGAATTAGAATGTCAAAACCCTTCAGGAAGAGATGCAGAAGGTAAATGG
GAATATGATAATTCAATAAGAGCCCCAGAAGAGAGGAGGAGGAGAATTCAATCCTTTGCATAAGCAGCGGCAACTTCAGA
TTGGAGTGGATCTTCATACCAAAGTGATTCTCATTCCAGTTCTAAAGGAAAATTCACAGAGCAATCTAATAGTCAGATCT
TTGAGAAGGACAAATGTATCCCAGGAGAAGTGTCGAGCCCTTCAGAGAAAATGAACATAGGTAAGGGTGGAGGTGCACAA
AATGGCAACACTTGCATGTCTCTTTTTACAAGTCAAGCTCACGATAAAAGTGTAACAGGAAGGAAGAGGAAGCCACTGAG
AAAGAGTAACGACCGTCAACAACAATCAGGCATCATAGCAG-AAAAAATTGGATGTTGGAGAATGAAGGAAACTTAGTGA
TAGTCCCTCTTCGAGGAATAGATGAATTACCTAGAGAGTCCATCCCATCAAACCTTATGGAGCTGGACCAAAGGGATGCA
GAGGGCGCCAGAAAACAAAAGATGGAACTCTCCTTATCAAATGCACTATCGGCGGAGGCTGCCTATGTGGAGCATCCCCG
CCGGTCACAATGAAAACCTTATGCTTGAACTGCCGCATGTGTGGGCAGCCCGAGGTAATTCAGGAGCTCCGCCTTCTAGT
GGAGCAGCATAACCCAGATTTTGTCTTCCTCTCGGAGACAAAGATGTCTAAAGAAAGAGCAAAGAATCTGAGATTTAAAT
TGGAGTTTCATGATGCGATAGCTGTAAGTAGTGAAGGGCTAAGTGGAGGACTAGTTCTCATGTGGAAAAAGGGTATTATC
GTGAGGGAACAAACTAAAAAATAATTCTCACATAGATGTCACTGTCTTCAGTGAGAACTTGGGAGAAGAATGAAGATTTA
CAGGCTTTTATGGCCAACCACGAAGTCAAAAAAGGAAAGAATCATGGTATTTGCGTCAATTTCTAAGATGTGCAAGTGAT
TTACCCTGGCTATGTGCGGGAGACTTTAATGAAGTATTAGAAGAAGAGGAGCATTTTGGCTATAAGGAGAGAGGGGAATG
GAGAATGTCTGGATTTAGAGAGG-AGTCTAAATGTGTGGCCTCTCATATTTAGGCTATACAGGGCTCCCATATACATGGG
ACAATAGACAAGAAGGAGAAAAGAACATCAAAGTTTG------------GCTAGATAGAGCGTTGCCTTATGAGAACTTT
TTTGCAGAAATATGGTGTTATAAAAGTGTTACATTTGCAAACCACAGAATCTGATCATTGTGCATTGCTAATAGATATTG
ACCAACAACAACAAGGCGAAAAGGTAAAAGCAAAGAAAATGTTCCGGTATGAA
>chr1D_1213
AAG-----------------------------------------------------------------------------
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---------------------------ACTCTTCAATTGCAGACTATCATGGGAGCTATGAAACCAGCTTGGGGAAATCC
AAAAGGGCTAAGAGCAAGAATGGTGGGGGATAACGTATTCATTGTGGATTTTATGACGGAGACAGACAGAGAGAGGGCAC
TAGATGGAACCCCGGCCCGTGGCTTGTAGGGCGCCATGCAGTGCTCTTGAAAGAGTTTGAGAAGAATCTTAGACCCTCAG
ATGTGCGTTTTGAGTCAATGCATATTTGGGTCAGGATCATAAACATACCTTTTAAGTTTTTTCGACAAAGGGTAAATTTT
ATTGGCTCAAATAGAGCATCAAGATGATACATCACACTGAACACACACCCGGCCTCTGCATAACTAAGATGCACACAACC
AACCCAACACACACACATAGAAACACACCGGCAACTAGCGAAGTCATAAGACCAAAAGCTTTGTGCAGGTGTGGAAAAAA
GAAAAAGAAACAAGAAATAAGTCCCAAAGTGATCAGATGAACGATCGACAAACTACAACTGAGACCATATCCGCACCAAC
CATCGACACCACATGGATGACAAGGATCTTCAACAGCAACGCCTTCAGGAAGGAAGTGACACTCAAGCGACGCCGTCACC
GGATCCAACCACAAAGGCCAGTATCAAAGTTTTCACCCTGAAGAATCAGTCCGAACATATCCGAGCAATGCCTCCAACAA
GGTAACGATGTGAAAAACATCGCCATTGCCAGGAATAACCACTCGGGTCTATCCTAGGCTTTCGCCCCGGAGCTCGAGAC
CGGGTGCACATAGCACCACCATCCAAATCTCACATGTGTTGTCTCCACCGCATTTCCGCTATCCGAGCAGCTACAATTGG
ATCGCCGCTACTCCACAAACATACCTTTTAAGTGGATGAACAAAAAGAAATGATGGAAGGTAGCGGGTCTTGCAGGCAAA
GTTGATAAATTAGATGCTGACGAATTTGGCAATGCTGTAGGTAAGTATCTTAGAGCAAGAGTGGAAATCCCAATTGAGAA
ACCATTGAAGAGGTATATCACAATTGAAACTTCAGAAGGTGATGAATACTACGATCTACAATATGAGAAGTTGCCTTTCT
TCTGCTTCTCATGTGGCATTATGGGGCATTCTGAATTAGAATGTCAAAACCCTTCAGGAAGAGATGCAGAAGGTAAATGG
GAATATGATAATTCAATAAGAGCCCCAGAAGAGAGGAGGAGGAGAATTCAATCCTTTCCACAAGCAGCGGCAACTTCAGA
TTGGAGTGGATCTTCATACCGAAGTGATTCTCATTCCAGTTCTAAAGGAAAATCCACGGAGCAATCTAACAGTCAGACCT
TTGAGAAGGACAAATATATCCCAGGAGAAGTGTCGAACCCTTCGGAGAAAATGGGCATAGGTAAGGGTGGAGGTGTCCAA
AATAGCAACACTTGCATGACTCTTTTTACAAGTCAAGCTCAGGATAAAAGTGTAATAGGAAGGAAGAGGAAGCCACTGAA
AAACAGTAACAACCGTCAACAACAATCAGGCACCGTGGCAGAAAAAAATTGGATGTTGGAGAATGAAGGAAACTTAGTGA
CAGTCCCTGTTCGAGGAATATATGAATTACCTAGAGAGTCCGGCCCATCAAACCTTATGCAGCTGGACCAAAGGGATGCA
GAGGGCGCCA-AAAACAAAAGATGGAACTCTCCTTATCAAATGCACTATCGGCGGAGGCTGCTTATGTGGAGCAGCCCCG
CCGGTCACAATGAAAACCTTATGCTTGAACTGCCGCGGGTGTGGGCAGCCCGAGGCAGTTCAGGAGCTCCGCCTTCTGGT
GGAGCAGCATAGCCCAGAATTGGTCTTCCTGTCGGAGACAACGATGTCTGAAGAAAGAGCAAAGAATCTGAGATTTAAAT
TGGGGTTTGATAATGCGATAGCTGTAAGTAGTGAAGGGTTAAGTGGAGAACTAGTTCTCATGTGGAAAAAGGGTATTATA
GTGAGG-AACAAACC-AAAAATAATTCTCACATAGATGTCACTGTCTTCAATGAGAACTTGGGAGAAGAATGGACATTTA
CAGGCTTTTATGGCCAACCACGAAGTCAAAAAAGGAAAGAATCACGGTATTTGCTTCAATTTCTAAGATGTGCAAGTGAT
TTACCCTGGCTATGTGCGGGAGACTTTAATGAAGTATTAGAAGAAGAGGAGCATTTTGGCTATAAGGAGAGAGGGGAATG
GAGAATGTCTGGATTTAGAGAGGTAGTCCAAATGTGTGGCTTCTCAGATTTAGGCTATACAGGGCTCCCATATACATGGG
ACAATAGACAAGAAGGAGGAAAGAACATCAAAGTTCGACTAGATAGAGCGCTGGCTGATGAGAAA-------------TT
TTTGCAGAAATATGGGGTTATAAAAGTGTTACATCTGCAAACCACAGAATCTGATCATTGTGCATTGCTAATAGATAGTG
GCCAACAACAGCAAGGCGAAAAGGTGAAAGCAAAGAAAATGTTCCGGTATGAA
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S------S-S------S--------------
--------------------------S-----S-SS-SSSSS---------S------------S----------SSS--
-----------S-------------------------S--------------------------S---S------S----
------S----------S---S-S-------S------------S-------S---S---S------S--------S---
S---------------------------------S----S-----------SS----S---S------------------
-------------------S-S---------S----------------------------------------S-----S-
--------SS-S----S------------------------------------------S---S-S-------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS-----S-------------------S----------------------------S-S-S----------
-------------------SS---------S--------S-------S---------S----------------------
----------------S--------------S------S----------------S--------S---------------
-----------------------------------------------------------S--------------------
SSSS------S--S----------S-------------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------------------------------------------------S---------
---------------------------------------------------S----------------------------
-----------------------------------------------------------------------------S--
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----------S---------------------------------------------------------------------
----------------------------------------------S----------S----------------------
---------S-----------------------S----------------------------------------------
-------------------------------------------------------------------S------------
----------S---------------------------------------------------------------------
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-----------------------S--------------------------------------------------------
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>forward_714
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------------------------------------------------------TCCACCAAATCTCACCGTCG------
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>reverse_2868
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-------------------------------------------------------------------ACAAAGGGATGCA
GAGGGC--------------------------------------------------------------------------
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