Multiple sequence alignment - TraesCS1A01G326800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G326800 chr1A 100.000 2639 0 0 1 2639 516741288 516738650 0.000000e+00 4874.0
1 TraesCS1A01G326800 chr1A 85.502 1345 140 36 691 1992 516727636 516726304 0.000000e+00 1352.0
2 TraesCS1A01G326800 chr1A 90.452 199 14 3 468 663 580149200 580149004 9.370000e-65 257.0
3 TraesCS1A01G326800 chr1D 92.816 1392 74 15 649 2032 420380251 420378878 0.000000e+00 1993.0
4 TraesCS1A01G326800 chr1D 85.076 1320 145 41 686 1966 420239026 420237720 0.000000e+00 1299.0
5 TraesCS1A01G326800 chr1D 92.610 433 18 7 26 452 420380673 420380249 6.240000e-171 610.0
6 TraesCS1A01G326800 chr1D 92.105 190 13 2 468 657 191376208 191376021 1.560000e-67 267.0
7 TraesCS1A01G326800 chr1D 91.534 189 15 1 469 657 191375444 191375257 2.610000e-65 259.0
8 TraesCS1A01G326800 chr1D 85.204 196 14 8 145 337 420239319 420239136 1.250000e-43 187.0
9 TraesCS1A01G326800 chr1B 92.246 1380 69 20 668 2027 568006890 568005529 0.000000e+00 1921.0
10 TraesCS1A01G326800 chr1B 82.691 1531 184 62 688 2171 567980100 567978604 0.000000e+00 1284.0
11 TraesCS1A01G326800 chr1B 93.850 374 13 4 28 399 568007296 568006931 2.970000e-154 555.0
12 TraesCS1A01G326800 chr1B 92.063 63 5 0 2175 2237 634242221 634242159 3.620000e-14 89.8
13 TraesCS1A01G326800 chr3B 79.144 561 82 23 912 1456 667779416 667778875 3.230000e-94 355.0
14 TraesCS1A01G326800 chr3B 80.303 132 11 11 2180 2309 421904059 421904177 4.680000e-13 86.1
15 TraesCS1A01G326800 chr3D 79.223 515 82 13 953 1456 506061908 506061408 4.210000e-88 335.0
16 TraesCS1A01G326800 chr3D 79.352 247 38 11 912 1152 506109521 506109282 7.560000e-36 161.0
17 TraesCS1A01G326800 chr5D 91.710 193 12 2 467 657 288133277 288133467 5.600000e-67 265.0
18 TraesCS1A01G326800 chr5D 83.951 81 8 4 2180 2258 434689520 434689443 3.640000e-09 73.1
19 TraesCS1A01G326800 chr6A 91.146 192 14 2 468 657 154050632 154050442 9.370000e-65 257.0
20 TraesCS1A01G326800 chr6A 90.526 190 15 2 468 657 593697110 593696924 5.640000e-62 248.0
21 TraesCS1A01G326800 chrUn 90.625 192 14 4 467 657 470950147 470950335 4.360000e-63 252.0
22 TraesCS1A01G326800 chr5A 90.155 193 17 2 466 657 60097085 60096894 1.570000e-62 250.0
23 TraesCS1A01G326800 chr5A 90.576 191 14 4 467 657 309094576 309094390 1.570000e-62 250.0
24 TraesCS1A01G326800 chr7D 74.631 406 87 12 1085 1479 573618029 573618429 5.840000e-37 165.0
25 TraesCS1A01G326800 chr7D 75.845 207 44 6 1112 1315 573475485 573475688 1.670000e-17 100.0
26 TraesCS1A01G326800 chr7D 75.000 212 49 4 1112 1321 573618320 573618529 7.780000e-16 95.3
27 TraesCS1A01G326800 chr7D 100.000 32 0 0 2184 2215 403152426 403152395 2.840000e-05 60.2
28 TraesCS1A01G326800 chr7B 75.117 213 47 6 1112 1321 632331519 632331728 7.780000e-16 95.3
29 TraesCS1A01G326800 chr6B 83.582 67 7 3 2184 2248 706534511 706534447 2.840000e-05 60.2
30 TraesCS1A01G326800 chr4A 100.000 29 0 0 2185 2213 712126446 712126418 1.000000e-03 54.7
31 TraesCS1A01G326800 chr4A 100.000 29 0 0 2185 2213 712432917 712432945 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G326800 chr1A 516738650 516741288 2638 True 4874.0 4874 100.0000 1 2639 1 chr1A.!!$R2 2638
1 TraesCS1A01G326800 chr1A 516726304 516727636 1332 True 1352.0 1352 85.5020 691 1992 1 chr1A.!!$R1 1301
2 TraesCS1A01G326800 chr1D 420378878 420380673 1795 True 1301.5 1993 92.7130 26 2032 2 chr1D.!!$R3 2006
3 TraesCS1A01G326800 chr1D 420237720 420239319 1599 True 743.0 1299 85.1400 145 1966 2 chr1D.!!$R2 1821
4 TraesCS1A01G326800 chr1D 191375257 191376208 951 True 263.0 267 91.8195 468 657 2 chr1D.!!$R1 189
5 TraesCS1A01G326800 chr1B 567978604 567980100 1496 True 1284.0 1284 82.6910 688 2171 1 chr1B.!!$R1 1483
6 TraesCS1A01G326800 chr1B 568005529 568007296 1767 True 1238.0 1921 93.0480 28 2027 2 chr1B.!!$R3 1999
7 TraesCS1A01G326800 chr3B 667778875 667779416 541 True 355.0 355 79.1440 912 1456 1 chr3B.!!$R1 544
8 TraesCS1A01G326800 chr3D 506061408 506061908 500 True 335.0 335 79.2230 953 1456 1 chr3D.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 1052 1.164411 CCACACACACACACACAAGT 58.836 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2553 2767 0.037605 AGAGGAAGGTGTTAACGCGG 60.038 55.0 12.47 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.889196 TTACGTGTTTGTTGGAGATGC 57.111 42.857 0.00 0.00 0.00 3.91
26 27 1.967319 ACGTGTTTGTTGGAGATGCT 58.033 45.000 0.00 0.00 0.00 3.79
37 38 5.048153 GTTGGAGATGCTCTAACAAAACC 57.952 43.478 15.79 0.00 46.43 3.27
42 43 4.642429 AGATGCTCTAACAAAACCGAGTT 58.358 39.130 0.00 0.00 0.00 3.01
52 53 3.930229 ACAAAACCGAGTTTTCTTTTGCC 59.070 39.130 10.56 0.00 42.78 4.52
90 91 7.767250 TTGTTGATGGATGTGGTAAAATGTA 57.233 32.000 0.00 0.00 0.00 2.29
91 92 7.767250 TGTTGATGGATGTGGTAAAATGTAA 57.233 32.000 0.00 0.00 0.00 2.41
92 93 7.825681 TGTTGATGGATGTGGTAAAATGTAAG 58.174 34.615 0.00 0.00 0.00 2.34
93 94 7.093988 TGTTGATGGATGTGGTAAAATGTAAGG 60.094 37.037 0.00 0.00 0.00 2.69
134 137 6.124088 AGCTAATTTCTCATACCGCAAAAG 57.876 37.500 0.00 0.00 0.00 2.27
288 299 5.947228 TCGTGCTCTCATGAAAAGAAAAT 57.053 34.783 8.58 0.00 35.43 1.82
289 300 5.931532 TCGTGCTCTCATGAAAAGAAAATC 58.068 37.500 8.58 0.00 35.43 2.17
372 383 3.657015 ACGATCAGGTCAGATGCTATG 57.343 47.619 0.00 0.00 0.00 2.23
373 384 2.288702 ACGATCAGGTCAGATGCTATGC 60.289 50.000 0.00 0.00 0.00 3.14
374 385 2.288640 CGATCAGGTCAGATGCTATGCA 60.289 50.000 0.00 0.00 44.86 3.96
379 390 2.172082 AGGTCAGATGCTATGCACATGT 59.828 45.455 0.00 0.00 43.04 3.21
452 472 5.524511 TTCTTACACGTAATCACATGCAC 57.475 39.130 0.00 0.00 0.00 4.57
462 482 8.162245 CACGTAATCACATGCACATACATATAC 58.838 37.037 0.00 0.00 0.00 1.47
463 483 7.061789 ACGTAATCACATGCACATACATATACG 59.938 37.037 0.00 0.79 0.00 3.06
500 520 4.985044 ACATACAAAGAGTTACACGCAC 57.015 40.909 0.00 0.00 0.00 5.34
506 526 5.054477 ACAAAGAGTTACACGCACTTACAT 58.946 37.500 0.00 0.00 0.00 2.29
508 528 4.252971 AGAGTTACACGCACTTACATGT 57.747 40.909 2.69 2.69 0.00 3.21
550 570 9.787435 TTATCTACTAACCAATCACAAACTTGT 57.213 29.630 0.00 0.00 43.36 3.16
553 573 5.445964 ACTAACCAATCACAAACTTGTCCT 58.554 37.500 0.00 0.00 39.91 3.85
602 622 3.373767 GCCTCCCCACCTATTAACCAATT 60.374 47.826 0.00 0.00 0.00 2.32
657 677 5.530712 TGTTTGTACGTGTAGCATTACTCA 58.469 37.500 0.00 0.00 0.00 3.41
658 678 6.160684 TGTTTGTACGTGTAGCATTACTCAT 58.839 36.000 0.00 0.00 0.00 2.90
659 679 7.314393 TGTTTGTACGTGTAGCATTACTCATA 58.686 34.615 0.00 0.00 0.00 2.15
660 680 7.977293 TGTTTGTACGTGTAGCATTACTCATAT 59.023 33.333 0.00 0.00 0.00 1.78
661 681 9.454585 GTTTGTACGTGTAGCATTACTCATATA 57.545 33.333 0.00 0.00 0.00 0.86
663 683 9.620660 TTGTACGTGTAGCATTACTCATATATG 57.379 33.333 6.36 6.36 0.00 1.78
664 684 8.789762 TGTACGTGTAGCATTACTCATATATGT 58.210 33.333 12.42 0.00 0.00 2.29
667 687 8.789762 ACGTGTAGCATTACTCATATATGTACA 58.210 33.333 12.42 0.00 0.00 2.90
727 762 4.684265 GCATGTCTCATGCAAGCG 57.316 55.556 23.86 0.00 44.00 4.68
803 856 3.756434 TCTGGCATCATATCACATGCATG 59.244 43.478 25.09 25.09 46.19 4.06
836 896 5.048573 GGTACTCTCCTCGATCAGGTTAATC 60.049 48.000 9.98 0.00 43.95 1.75
969 1051 1.398041 CTCCACACACACACACACAAG 59.602 52.381 0.00 0.00 0.00 3.16
970 1052 1.164411 CCACACACACACACACAAGT 58.836 50.000 0.00 0.00 0.00 3.16
999 1095 3.063861 CCAGCACCAAGAAAACAAAAAGC 59.936 43.478 0.00 0.00 0.00 3.51
1254 1356 1.355210 GACGTGCACCAACAACCAG 59.645 57.895 12.15 0.00 0.00 4.00
1467 1569 2.721231 GCTTGCAGCACCGACAAA 59.279 55.556 0.00 0.00 41.89 2.83
1575 1677 4.341783 GGTGCAGGCTGCCAGAGT 62.342 66.667 34.58 0.00 44.23 3.24
1644 1755 6.346896 CACTCTTCTCCAAGAATGATGATCA 58.653 40.000 0.00 0.00 37.98 2.92
1646 1757 7.499563 CACTCTTCTCCAAGAATGATGATCAAT 59.500 37.037 0.00 0.00 37.98 2.57
1687 1798 1.282817 CGACGAATAATCCGTGGCAA 58.717 50.000 0.00 0.00 40.67 4.52
1966 2086 8.296000 TGATTTCGTTGCAATATATTACCATGG 58.704 33.333 11.19 11.19 0.00 3.66
1967 2087 7.575414 TTTCGTTGCAATATATTACCATGGT 57.425 32.000 23.55 23.55 0.00 3.55
1974 2094 6.426633 TGCAATATATTACCATGGTTCTCACG 59.573 38.462 25.38 6.60 0.00 4.35
1975 2095 6.649141 GCAATATATTACCATGGTTCTCACGA 59.351 38.462 25.38 0.00 0.00 4.35
2009 2129 6.918022 CCTTTGCTCAGTAAAAGTAAAAGTGG 59.082 38.462 0.00 0.00 32.57 4.00
2010 2130 7.399245 TTTGCTCAGTAAAAGTAAAAGTGGT 57.601 32.000 0.00 0.00 0.00 4.16
2032 2152 8.818057 GTGGTAGTCTTGCATAAGTATTGTTAG 58.182 37.037 0.00 0.00 35.38 2.34
2072 2282 8.821894 TGTTCAAATATTTTGTGTTTAGGTTGC 58.178 29.630 0.00 0.00 0.00 4.17
2085 2295 6.419710 GTGTTTAGGTTGCATACTTGAAAACC 59.580 38.462 10.21 0.00 39.56 3.27
2087 2297 6.909550 TTAGGTTGCATACTTGAAAACCAT 57.090 33.333 5.74 0.00 40.74 3.55
2176 2390 7.624360 AAATGAATTTTGATACCTCGCTACA 57.376 32.000 0.00 0.00 0.00 2.74
2178 2392 6.417191 TGAATTTTGATACCTCGCTACAAC 57.583 37.500 0.00 0.00 0.00 3.32
2179 2393 5.353123 TGAATTTTGATACCTCGCTACAACC 59.647 40.000 0.00 0.00 0.00 3.77
2181 2395 4.481368 TTTGATACCTCGCTACAACCAT 57.519 40.909 0.00 0.00 0.00 3.55
2182 2396 5.601583 TTTGATACCTCGCTACAACCATA 57.398 39.130 0.00 0.00 0.00 2.74
2184 2398 4.212716 TGATACCTCGCTACAACCATAGT 58.787 43.478 0.00 0.00 0.00 2.12
2186 2400 3.975168 ACCTCGCTACAACCATAGTTT 57.025 42.857 0.00 0.00 32.45 2.66
2187 2401 4.281898 ACCTCGCTACAACCATAGTTTT 57.718 40.909 0.00 0.00 32.45 2.43
2188 2402 5.410355 ACCTCGCTACAACCATAGTTTTA 57.590 39.130 0.00 0.00 32.45 1.52
2189 2403 5.797051 ACCTCGCTACAACCATAGTTTTAA 58.203 37.500 0.00 0.00 32.45 1.52
2190 2404 6.232692 ACCTCGCTACAACCATAGTTTTAAA 58.767 36.000 0.00 0.00 32.45 1.52
2191 2405 6.882678 ACCTCGCTACAACCATAGTTTTAAAT 59.117 34.615 0.00 0.00 32.45 1.40
2192 2406 8.042515 ACCTCGCTACAACCATAGTTTTAAATA 58.957 33.333 0.00 0.00 32.45 1.40
2193 2407 8.548721 CCTCGCTACAACCATAGTTTTAAATAG 58.451 37.037 0.00 0.00 32.45 1.73
2194 2408 7.912383 TCGCTACAACCATAGTTTTAAATAGC 58.088 34.615 0.00 0.00 32.45 2.97
2195 2409 7.549842 TCGCTACAACCATAGTTTTAAATAGCA 59.450 33.333 9.52 0.00 32.45 3.49
2196 2410 7.850982 CGCTACAACCATAGTTTTAAATAGCAG 59.149 37.037 9.52 1.84 32.45 4.24
2197 2411 8.129211 GCTACAACCATAGTTTTAAATAGCAGG 58.871 37.037 5.63 1.70 32.45 4.85
2199 2413 6.663523 ACAACCATAGTTTTAAATAGCAGGCT 59.336 34.615 0.00 0.00 32.45 4.58
2200 2414 7.832187 ACAACCATAGTTTTAAATAGCAGGCTA 59.168 33.333 3.11 3.11 32.45 3.93
2201 2415 8.850156 CAACCATAGTTTTAAATAGCAGGCTAT 58.150 33.333 7.96 7.96 36.01 2.97
2202 2416 8.396272 ACCATAGTTTTAAATAGCAGGCTATG 57.604 34.615 14.10 0.00 39.03 2.23
2220 2434 3.513225 CCAAATAGCGGCACCCTG 58.487 61.111 1.45 0.00 0.00 4.45
2221 2435 2.774799 CCAAATAGCGGCACCCTGC 61.775 63.158 1.45 0.00 44.08 4.85
2222 2436 1.750399 CAAATAGCGGCACCCTGCT 60.750 57.895 1.45 2.32 44.28 4.24
2223 2437 1.452108 AAATAGCGGCACCCTGCTC 60.452 57.895 1.45 0.00 44.28 4.26
2224 2438 2.196997 AAATAGCGGCACCCTGCTCA 62.197 55.000 1.45 0.00 44.28 4.26
2225 2439 2.196997 AATAGCGGCACCCTGCTCAA 62.197 55.000 1.45 0.00 44.28 3.02
2226 2440 2.196997 ATAGCGGCACCCTGCTCAAA 62.197 55.000 1.45 0.00 44.28 2.69
2227 2441 2.196997 TAGCGGCACCCTGCTCAAAT 62.197 55.000 1.45 0.00 44.28 2.32
2228 2442 1.748879 GCGGCACCCTGCTCAAATA 60.749 57.895 0.00 0.00 44.28 1.40
2229 2443 1.312371 GCGGCACCCTGCTCAAATAA 61.312 55.000 0.00 0.00 44.28 1.40
2230 2444 0.451783 CGGCACCCTGCTCAAATAAC 59.548 55.000 0.00 0.00 44.28 1.89
2231 2445 1.839424 GGCACCCTGCTCAAATAACT 58.161 50.000 0.00 0.00 44.28 2.24
2232 2446 2.679639 CGGCACCCTGCTCAAATAACTA 60.680 50.000 0.00 0.00 44.28 2.24
2233 2447 3.555966 GGCACCCTGCTCAAATAACTAT 58.444 45.455 0.00 0.00 44.28 2.12
2234 2448 4.714632 GGCACCCTGCTCAAATAACTATA 58.285 43.478 0.00 0.00 44.28 1.31
2235 2449 4.757149 GGCACCCTGCTCAAATAACTATAG 59.243 45.833 0.00 0.00 44.28 1.31
2236 2450 4.214332 GCACCCTGCTCAAATAACTATAGC 59.786 45.833 0.00 0.00 40.96 2.97
2237 2451 4.449068 CACCCTGCTCAAATAACTATAGCG 59.551 45.833 0.00 0.00 35.95 4.26
2238 2452 3.433615 CCCTGCTCAAATAACTATAGCGC 59.566 47.826 0.00 0.00 35.95 5.92
2239 2453 4.058124 CCTGCTCAAATAACTATAGCGCA 58.942 43.478 11.47 0.00 35.95 6.09
2240 2454 4.151335 CCTGCTCAAATAACTATAGCGCAG 59.849 45.833 11.47 0.00 41.29 5.18
2269 2483 5.441700 CGAGGCTATATGTCGCTATTTTG 57.558 43.478 0.00 0.00 0.00 2.44
2270 2484 4.923871 CGAGGCTATATGTCGCTATTTTGT 59.076 41.667 0.00 0.00 0.00 2.83
2271 2485 6.090783 CGAGGCTATATGTCGCTATTTTGTA 58.909 40.000 0.00 0.00 0.00 2.41
2272 2486 6.584942 CGAGGCTATATGTCGCTATTTTGTAA 59.415 38.462 0.00 0.00 0.00 2.41
2273 2487 7.275779 CGAGGCTATATGTCGCTATTTTGTAAT 59.724 37.037 0.00 0.00 0.00 1.89
2274 2488 8.848474 AGGCTATATGTCGCTATTTTGTAATT 57.152 30.769 0.00 0.00 0.00 1.40
2275 2489 9.284968 AGGCTATATGTCGCTATTTTGTAATTT 57.715 29.630 0.00 0.00 0.00 1.82
2321 2535 9.772973 AATACTATTTAGTGACACACTGTTCAA 57.227 29.630 8.59 0.00 45.01 2.69
2322 2536 9.772973 ATACTATTTAGTGACACACTGTTCAAA 57.227 29.630 8.59 7.19 45.01 2.69
2323 2537 7.916552 ACTATTTAGTGACACACTGTTCAAAC 58.083 34.615 8.59 0.00 45.01 2.93
2324 2538 5.554822 TTTAGTGACACACTGTTCAAACC 57.445 39.130 8.59 0.00 45.01 3.27
2325 2539 2.006888 AGTGACACACTGTTCAAACCG 58.993 47.619 8.59 0.00 43.63 4.44
2327 2541 2.612212 GTGACACACTGTTCAAACCGAT 59.388 45.455 0.00 0.00 0.00 4.18
2328 2542 3.805422 GTGACACACTGTTCAAACCGATA 59.195 43.478 0.00 0.00 0.00 2.92
2329 2543 4.271533 GTGACACACTGTTCAAACCGATAA 59.728 41.667 0.00 0.00 0.00 1.75
2330 2544 4.876679 TGACACACTGTTCAAACCGATAAA 59.123 37.500 0.00 0.00 0.00 1.40
2331 2545 5.007234 TGACACACTGTTCAAACCGATAAAG 59.993 40.000 0.00 0.00 0.00 1.85
2332 2546 4.879545 ACACACTGTTCAAACCGATAAAGT 59.120 37.500 0.00 0.00 0.00 2.66
2333 2547 5.007332 ACACACTGTTCAAACCGATAAAGTC 59.993 40.000 0.00 0.00 0.00 3.01
2350 2564 9.550811 CGATAAAGTCGGCTATTTAAAACTTTT 57.449 29.630 15.09 6.89 46.47 2.27
2380 2594 1.418373 GTTTCATGAAAACCGGCAGC 58.582 50.000 22.07 4.09 41.23 5.25
2381 2595 1.035923 TTTCATGAAAACCGGCAGCA 58.964 45.000 18.45 0.00 0.00 4.41
2382 2596 1.035923 TTCATGAAAACCGGCAGCAA 58.964 45.000 5.45 0.00 0.00 3.91
2383 2597 1.035923 TCATGAAAACCGGCAGCAAA 58.964 45.000 0.00 0.00 0.00 3.68
2384 2598 1.410517 TCATGAAAACCGGCAGCAAAA 59.589 42.857 0.00 0.00 0.00 2.44
2385 2599 2.159043 TCATGAAAACCGGCAGCAAAAA 60.159 40.909 0.00 0.00 0.00 1.94
2386 2600 2.611225 TGAAAACCGGCAGCAAAAAT 57.389 40.000 0.00 0.00 0.00 1.82
2387 2601 2.208431 TGAAAACCGGCAGCAAAAATG 58.792 42.857 0.00 0.00 0.00 2.32
2388 2602 0.943673 AAAACCGGCAGCAAAAATGC 59.056 45.000 0.00 0.00 43.09 3.56
2394 2608 3.610637 GCAGCAAAAATGCCCTCAA 57.389 47.368 0.00 0.00 37.73 3.02
2395 2609 1.881591 GCAGCAAAAATGCCCTCAAA 58.118 45.000 0.00 0.00 37.73 2.69
2396 2610 2.429478 GCAGCAAAAATGCCCTCAAAT 58.571 42.857 0.00 0.00 37.73 2.32
2397 2611 2.160813 GCAGCAAAAATGCCCTCAAATG 59.839 45.455 0.00 0.00 37.73 2.32
2398 2612 2.160813 CAGCAAAAATGCCCTCAAATGC 59.839 45.455 0.00 0.00 34.90 3.56
2399 2613 1.469703 GCAAAAATGCCCTCAAATGCC 59.530 47.619 0.00 0.00 0.00 4.40
2400 2614 1.733360 CAAAAATGCCCTCAAATGCCG 59.267 47.619 0.00 0.00 0.00 5.69
2401 2615 0.391528 AAAATGCCCTCAAATGCCGC 60.392 50.000 0.00 0.00 0.00 6.53
2402 2616 1.543065 AAATGCCCTCAAATGCCGCA 61.543 50.000 0.00 0.00 0.00 5.69
2403 2617 1.952102 AATGCCCTCAAATGCCGCAG 61.952 55.000 0.00 0.00 32.06 5.18
2404 2618 3.064324 GCCCTCAAATGCCGCAGT 61.064 61.111 0.00 0.00 0.00 4.40
2405 2619 2.639327 GCCCTCAAATGCCGCAGTT 61.639 57.895 0.00 0.00 0.00 3.16
2406 2620 1.966762 CCCTCAAATGCCGCAGTTT 59.033 52.632 2.71 0.00 0.00 2.66
2407 2621 0.318120 CCCTCAAATGCCGCAGTTTT 59.682 50.000 2.71 0.00 0.00 2.43
2408 2622 1.669795 CCCTCAAATGCCGCAGTTTTC 60.670 52.381 2.71 0.00 0.00 2.29
2409 2623 1.669795 CCTCAAATGCCGCAGTTTTCC 60.670 52.381 2.71 0.00 0.00 3.13
2410 2624 0.039617 TCAAATGCCGCAGTTTTCCG 60.040 50.000 2.71 0.00 0.00 4.30
2411 2625 0.039617 CAAATGCCGCAGTTTTCCGA 60.040 50.000 2.71 0.00 0.00 4.55
2412 2626 0.671251 AAATGCCGCAGTTTTCCGAA 59.329 45.000 0.00 0.00 0.00 4.30
2413 2627 0.671251 AATGCCGCAGTTTTCCGAAA 59.329 45.000 0.00 0.00 0.00 3.46
2414 2628 0.887933 ATGCCGCAGTTTTCCGAAAT 59.112 45.000 0.00 0.00 0.00 2.17
2415 2629 0.039617 TGCCGCAGTTTTCCGAAATG 60.040 50.000 0.00 0.00 0.00 2.32
2416 2630 0.039527 GCCGCAGTTTTCCGAAATGT 60.040 50.000 0.00 0.00 0.00 2.71
2417 2631 1.198178 GCCGCAGTTTTCCGAAATGTA 59.802 47.619 0.00 0.00 0.00 2.29
2418 2632 2.846693 CCGCAGTTTTCCGAAATGTAC 58.153 47.619 0.00 0.00 0.00 2.90
2419 2633 2.492001 CGCAGTTTTCCGAAATGTACG 58.508 47.619 0.00 0.00 0.00 3.67
2430 2644 5.594724 CCGAAATGTACGGTCTACAAAAA 57.405 39.130 0.00 0.00 44.57 1.94
2457 2671 6.817765 TTGAGCACAAAAATAAGTAGGAGG 57.182 37.500 0.00 0.00 32.73 4.30
2458 2672 4.700213 TGAGCACAAAAATAAGTAGGAGGC 59.300 41.667 0.00 0.00 0.00 4.70
2459 2673 4.923415 AGCACAAAAATAAGTAGGAGGCT 58.077 39.130 0.00 0.00 0.00 4.58
2460 2674 4.702131 AGCACAAAAATAAGTAGGAGGCTG 59.298 41.667 0.00 0.00 0.00 4.85
2461 2675 4.700213 GCACAAAAATAAGTAGGAGGCTGA 59.300 41.667 0.00 0.00 0.00 4.26
2462 2676 5.392057 GCACAAAAATAAGTAGGAGGCTGAC 60.392 44.000 0.00 0.00 0.00 3.51
2463 2677 5.940470 CACAAAAATAAGTAGGAGGCTGACT 59.060 40.000 0.00 0.00 0.00 3.41
2464 2678 7.103641 CACAAAAATAAGTAGGAGGCTGACTA 58.896 38.462 0.00 0.00 0.00 2.59
2465 2679 7.606456 CACAAAAATAAGTAGGAGGCTGACTAA 59.394 37.037 0.00 0.00 0.00 2.24
2466 2680 8.161425 ACAAAAATAAGTAGGAGGCTGACTAAA 58.839 33.333 0.00 0.00 0.00 1.85
2467 2681 9.010029 CAAAAATAAGTAGGAGGCTGACTAAAA 57.990 33.333 0.00 0.00 0.00 1.52
2468 2682 9.755122 AAAAATAAGTAGGAGGCTGACTAAAAT 57.245 29.630 0.00 0.00 0.00 1.82
2470 2684 9.833917 AAATAAGTAGGAGGCTGACTAAAATAC 57.166 33.333 0.00 0.00 0.00 1.89
2471 2685 5.873146 AGTAGGAGGCTGACTAAAATACC 57.127 43.478 0.00 0.00 0.00 2.73
2472 2686 5.530243 AGTAGGAGGCTGACTAAAATACCT 58.470 41.667 0.00 0.00 0.00 3.08
2473 2687 5.965091 AGTAGGAGGCTGACTAAAATACCTT 59.035 40.000 0.00 0.00 0.00 3.50
2474 2688 5.780958 AGGAGGCTGACTAAAATACCTTT 57.219 39.130 0.00 0.00 0.00 3.11
2475 2689 6.140968 AGGAGGCTGACTAAAATACCTTTT 57.859 37.500 0.00 0.00 38.17 2.27
2476 2690 7.266905 AGGAGGCTGACTAAAATACCTTTTA 57.733 36.000 0.00 0.00 36.09 1.52
2477 2691 7.696017 AGGAGGCTGACTAAAATACCTTTTAA 58.304 34.615 0.00 0.00 36.61 1.52
2478 2692 8.168058 AGGAGGCTGACTAAAATACCTTTTAAA 58.832 33.333 0.00 0.00 36.61 1.52
2479 2693 8.459635 GGAGGCTGACTAAAATACCTTTTAAAG 58.540 37.037 0.00 0.00 36.61 1.85
2480 2694 7.827701 AGGCTGACTAAAATACCTTTTAAAGC 58.172 34.615 0.00 9.27 36.61 3.51
2481 2695 7.670140 AGGCTGACTAAAATACCTTTTAAAGCT 59.330 33.333 0.00 0.00 37.62 3.74
2482 2696 8.304596 GGCTGACTAAAATACCTTTTAAAGCTT 58.695 33.333 0.00 0.00 37.62 3.74
2483 2697 9.129209 GCTGACTAAAATACCTTTTAAAGCTTG 57.871 33.333 0.00 0.00 36.61 4.01
2493 2707 7.891498 ACCTTTTAAAGCTTGTTTAGGAAGA 57.109 32.000 19.19 0.00 0.00 2.87
2494 2708 8.478775 ACCTTTTAAAGCTTGTTTAGGAAGAT 57.521 30.769 19.19 0.00 0.00 2.40
2495 2709 8.577296 ACCTTTTAAAGCTTGTTTAGGAAGATC 58.423 33.333 19.19 0.00 0.00 2.75
2496 2710 8.797438 CCTTTTAAAGCTTGTTTAGGAAGATCT 58.203 33.333 0.00 0.00 0.00 2.75
2497 2711 9.617975 CTTTTAAAGCTTGTTTAGGAAGATCTG 57.382 33.333 0.00 0.00 0.00 2.90
2498 2712 8.918202 TTTAAAGCTTGTTTAGGAAGATCTGA 57.082 30.769 0.00 0.00 0.00 3.27
2499 2713 9.520515 TTTAAAGCTTGTTTAGGAAGATCTGAT 57.479 29.630 0.00 0.00 0.00 2.90
2500 2714 9.520515 TTAAAGCTTGTTTAGGAAGATCTGATT 57.479 29.630 0.00 0.00 0.00 2.57
2501 2715 6.998968 AGCTTGTTTAGGAAGATCTGATTG 57.001 37.500 0.00 0.00 0.00 2.67
2502 2716 5.356470 AGCTTGTTTAGGAAGATCTGATTGC 59.644 40.000 0.00 0.00 0.00 3.56
2503 2717 5.124457 GCTTGTTTAGGAAGATCTGATTGCA 59.876 40.000 0.00 0.00 0.00 4.08
2504 2718 6.500684 TTGTTTAGGAAGATCTGATTGCAC 57.499 37.500 0.00 0.00 0.00 4.57
2505 2719 4.631377 TGTTTAGGAAGATCTGATTGCACG 59.369 41.667 0.00 0.00 0.00 5.34
2506 2720 4.736126 TTAGGAAGATCTGATTGCACGA 57.264 40.909 0.00 0.00 0.00 4.35
2507 2721 2.898705 AGGAAGATCTGATTGCACGAC 58.101 47.619 0.00 0.00 0.00 4.34
2508 2722 1.936547 GGAAGATCTGATTGCACGACC 59.063 52.381 0.00 0.00 0.00 4.79
2509 2723 2.621338 GAAGATCTGATTGCACGACCA 58.379 47.619 0.00 0.00 0.00 4.02
2510 2724 2.306341 AGATCTGATTGCACGACCAG 57.694 50.000 0.00 0.00 0.00 4.00
2511 2725 1.134580 AGATCTGATTGCACGACCAGG 60.135 52.381 0.00 0.00 0.00 4.45
2512 2726 0.904649 ATCTGATTGCACGACCAGGA 59.095 50.000 0.00 0.00 0.00 3.86
2513 2727 0.904649 TCTGATTGCACGACCAGGAT 59.095 50.000 0.00 0.00 0.00 3.24
2514 2728 1.278985 TCTGATTGCACGACCAGGATT 59.721 47.619 0.00 0.00 0.00 3.01
2515 2729 1.399440 CTGATTGCACGACCAGGATTG 59.601 52.381 0.00 0.00 0.00 2.67
2533 2747 1.361271 GGCATCATGGCAATGACGG 59.639 57.895 5.74 2.96 45.51 4.79
2534 2748 1.386525 GGCATCATGGCAATGACGGT 61.387 55.000 5.74 0.00 45.51 4.83
2535 2749 0.248743 GCATCATGGCAATGACGGTG 60.249 55.000 5.74 2.13 45.51 4.94
2536 2750 1.097232 CATCATGGCAATGACGGTGT 58.903 50.000 5.74 0.00 45.51 4.16
2537 2751 1.097232 ATCATGGCAATGACGGTGTG 58.903 50.000 5.74 0.00 45.51 3.82
2538 2752 1.153978 CATGGCAATGACGGTGTGC 60.154 57.895 0.00 0.00 35.67 4.57
2541 2755 3.747976 GCAATGACGGTGTGCCCC 61.748 66.667 0.00 0.00 31.94 5.80
2542 2756 2.282110 CAATGACGGTGTGCCCCA 60.282 61.111 0.00 0.00 0.00 4.96
2543 2757 1.678635 CAATGACGGTGTGCCCCAT 60.679 57.895 0.00 0.00 0.00 4.00
2544 2758 1.378514 AATGACGGTGTGCCCCATC 60.379 57.895 0.00 0.00 0.00 3.51
2548 2762 4.386951 CGGTGTGCCCCATCGTCA 62.387 66.667 0.00 0.00 42.82 4.35
2549 2763 2.746277 GGTGTGCCCCATCGTCAC 60.746 66.667 0.00 0.00 0.00 3.67
2550 2764 2.347490 GTGTGCCCCATCGTCACT 59.653 61.111 0.00 0.00 0.00 3.41
2551 2765 1.302511 GTGTGCCCCATCGTCACTT 60.303 57.895 0.00 0.00 0.00 3.16
2552 2766 1.003839 TGTGCCCCATCGTCACTTC 60.004 57.895 0.00 0.00 0.00 3.01
2553 2767 1.745489 GTGCCCCATCGTCACTTCC 60.745 63.158 0.00 0.00 0.00 3.46
2554 2768 2.124695 GCCCCATCGTCACTTCCC 60.125 66.667 0.00 0.00 0.00 3.97
2555 2769 2.186903 CCCCATCGTCACTTCCCG 59.813 66.667 0.00 0.00 0.00 5.14
2556 2770 2.511600 CCCATCGTCACTTCCCGC 60.512 66.667 0.00 0.00 0.00 6.13
2557 2771 2.885644 CCATCGTCACTTCCCGCG 60.886 66.667 0.00 0.00 0.00 6.46
2558 2772 2.126071 CATCGTCACTTCCCGCGT 60.126 61.111 4.92 0.00 0.00 6.01
2559 2773 1.736645 CATCGTCACTTCCCGCGTT 60.737 57.895 4.92 0.00 0.00 4.84
2560 2774 0.457166 CATCGTCACTTCCCGCGTTA 60.457 55.000 4.92 0.00 0.00 3.18
2561 2775 0.244450 ATCGTCACTTCCCGCGTTAA 59.756 50.000 4.92 0.00 0.00 2.01
2562 2776 0.664166 TCGTCACTTCCCGCGTTAAC 60.664 55.000 4.92 0.00 0.00 2.01
2563 2777 0.940519 CGTCACTTCCCGCGTTAACA 60.941 55.000 4.92 0.00 0.00 2.41
2564 2778 0.509929 GTCACTTCCCGCGTTAACAC 59.490 55.000 4.92 0.00 0.00 3.32
2565 2779 0.600782 TCACTTCCCGCGTTAACACC 60.601 55.000 4.92 0.00 0.00 4.16
2566 2780 0.601841 CACTTCCCGCGTTAACACCT 60.602 55.000 4.92 0.00 0.00 4.00
2567 2781 0.107268 ACTTCCCGCGTTAACACCTT 59.893 50.000 4.92 0.00 0.00 3.50
2568 2782 0.794473 CTTCCCGCGTTAACACCTTC 59.206 55.000 4.92 0.00 0.00 3.46
2569 2783 0.603439 TTCCCGCGTTAACACCTTCC 60.603 55.000 4.92 0.00 0.00 3.46
2570 2784 1.004200 CCCGCGTTAACACCTTCCT 60.004 57.895 4.92 0.00 0.00 3.36
2571 2785 1.017701 CCCGCGTTAACACCTTCCTC 61.018 60.000 4.92 0.00 0.00 3.71
2572 2786 0.037605 CCGCGTTAACACCTTCCTCT 60.038 55.000 4.92 0.00 0.00 3.69
2573 2787 1.607251 CCGCGTTAACACCTTCCTCTT 60.607 52.381 4.92 0.00 0.00 2.85
2574 2788 1.725164 CGCGTTAACACCTTCCTCTTC 59.275 52.381 6.39 0.00 0.00 2.87
2575 2789 2.762745 GCGTTAACACCTTCCTCTTCA 58.237 47.619 6.39 0.00 0.00 3.02
2576 2790 3.135994 GCGTTAACACCTTCCTCTTCAA 58.864 45.455 6.39 0.00 0.00 2.69
2577 2791 3.186613 GCGTTAACACCTTCCTCTTCAAG 59.813 47.826 6.39 0.00 0.00 3.02
2578 2792 4.628074 CGTTAACACCTTCCTCTTCAAGA 58.372 43.478 6.39 0.00 0.00 3.02
2579 2793 5.054477 CGTTAACACCTTCCTCTTCAAGAA 58.946 41.667 6.39 0.00 0.00 2.52
2580 2794 5.701290 CGTTAACACCTTCCTCTTCAAGAAT 59.299 40.000 6.39 0.00 0.00 2.40
2581 2795 6.347725 CGTTAACACCTTCCTCTTCAAGAATG 60.348 42.308 6.39 0.00 0.00 2.67
2582 2796 4.026356 ACACCTTCCTCTTCAAGAATGG 57.974 45.455 0.00 0.00 0.00 3.16
2583 2797 2.751806 CACCTTCCTCTTCAAGAATGGC 59.248 50.000 0.00 0.00 0.00 4.40
2584 2798 2.376518 ACCTTCCTCTTCAAGAATGGCA 59.623 45.455 0.00 0.00 0.00 4.92
2585 2799 3.181429 ACCTTCCTCTTCAAGAATGGCAA 60.181 43.478 0.00 0.00 0.00 4.52
2586 2800 3.192212 CCTTCCTCTTCAAGAATGGCAAC 59.808 47.826 0.00 0.00 0.00 4.17
2587 2801 2.795329 TCCTCTTCAAGAATGGCAACC 58.205 47.619 0.00 0.00 0.00 3.77
2588 2802 1.821136 CCTCTTCAAGAATGGCAACCC 59.179 52.381 0.00 0.00 0.00 4.11
2599 2813 2.897271 TGGCAACCCATTACTGTCAT 57.103 45.000 0.00 0.00 35.79 3.06
2600 2814 3.168035 TGGCAACCCATTACTGTCATT 57.832 42.857 0.00 0.00 35.79 2.57
2601 2815 3.088532 TGGCAACCCATTACTGTCATTC 58.911 45.455 0.00 0.00 35.79 2.67
2602 2816 2.427095 GGCAACCCATTACTGTCATTCC 59.573 50.000 0.00 0.00 0.00 3.01
2603 2817 2.427095 GCAACCCATTACTGTCATTCCC 59.573 50.000 0.00 0.00 0.00 3.97
2604 2818 3.877735 GCAACCCATTACTGTCATTCCCT 60.878 47.826 0.00 0.00 0.00 4.20
2605 2819 3.652057 ACCCATTACTGTCATTCCCTG 57.348 47.619 0.00 0.00 0.00 4.45
2606 2820 2.919602 ACCCATTACTGTCATTCCCTGT 59.080 45.455 0.00 0.00 0.00 4.00
2607 2821 3.054361 ACCCATTACTGTCATTCCCTGTC 60.054 47.826 0.00 0.00 0.00 3.51
2608 2822 3.054434 CCCATTACTGTCATTCCCTGTCA 60.054 47.826 0.00 0.00 0.00 3.58
2609 2823 4.385643 CCCATTACTGTCATTCCCTGTCAT 60.386 45.833 0.00 0.00 0.00 3.06
2610 2824 5.163205 CCCATTACTGTCATTCCCTGTCATA 60.163 44.000 0.00 0.00 0.00 2.15
2611 2825 6.466326 CCCATTACTGTCATTCCCTGTCATAT 60.466 42.308 0.00 0.00 0.00 1.78
2612 2826 6.652481 CCATTACTGTCATTCCCTGTCATATC 59.348 42.308 0.00 0.00 0.00 1.63
2613 2827 6.806668 TTACTGTCATTCCCTGTCATATCA 57.193 37.500 0.00 0.00 0.00 2.15
2614 2828 5.698741 ACTGTCATTCCCTGTCATATCAA 57.301 39.130 0.00 0.00 0.00 2.57
2615 2829 5.431765 ACTGTCATTCCCTGTCATATCAAC 58.568 41.667 0.00 0.00 0.00 3.18
2616 2830 5.190528 ACTGTCATTCCCTGTCATATCAACT 59.809 40.000 0.00 0.00 0.00 3.16
2617 2831 6.065976 TGTCATTCCCTGTCATATCAACTT 57.934 37.500 0.00 0.00 0.00 2.66
2618 2832 6.115446 TGTCATTCCCTGTCATATCAACTTC 58.885 40.000 0.00 0.00 0.00 3.01
2619 2833 6.070021 TGTCATTCCCTGTCATATCAACTTCT 60.070 38.462 0.00 0.00 0.00 2.85
2620 2834 6.825721 GTCATTCCCTGTCATATCAACTTCTT 59.174 38.462 0.00 0.00 0.00 2.52
2621 2835 7.337942 GTCATTCCCTGTCATATCAACTTCTTT 59.662 37.037 0.00 0.00 0.00 2.52
2622 2836 7.337689 TCATTCCCTGTCATATCAACTTCTTTG 59.662 37.037 0.00 0.00 36.42 2.77
2623 2837 6.126863 TCCCTGTCATATCAACTTCTTTGT 57.873 37.500 0.00 0.00 36.49 2.83
2624 2838 6.542821 TCCCTGTCATATCAACTTCTTTGTT 58.457 36.000 0.00 0.00 36.49 2.83
2625 2839 6.655003 TCCCTGTCATATCAACTTCTTTGTTC 59.345 38.462 0.00 0.00 36.49 3.18
2626 2840 6.430925 CCCTGTCATATCAACTTCTTTGTTCA 59.569 38.462 0.00 0.00 36.49 3.18
2627 2841 7.040478 CCCTGTCATATCAACTTCTTTGTTCAA 60.040 37.037 0.00 0.00 36.49 2.69
2628 2842 8.352201 CCTGTCATATCAACTTCTTTGTTCAAA 58.648 33.333 0.00 0.00 36.49 2.69
2629 2843 9.903682 CTGTCATATCAACTTCTTTGTTCAAAT 57.096 29.630 0.00 0.00 36.49 2.32
2636 2850 9.820725 ATCAACTTCTTTGTTCAAATTCATTCA 57.179 25.926 0.00 0.00 36.49 2.57
2637 2851 9.086336 TCAACTTCTTTGTTCAAATTCATTCAC 57.914 29.630 0.00 0.00 36.49 3.18
2638 2852 9.090692 CAACTTCTTTGTTCAAATTCATTCACT 57.909 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.858993 GCATCTCCAACAAACACGTAAAAATA 59.141 34.615 0.00 0.00 0.00 1.40
1 2 5.689961 GCATCTCCAACAAACACGTAAAAAT 59.310 36.000 0.00 0.00 0.00 1.82
2 3 5.038033 GCATCTCCAACAAACACGTAAAAA 58.962 37.500 0.00 0.00 0.00 1.94
3 4 4.336993 AGCATCTCCAACAAACACGTAAAA 59.663 37.500 0.00 0.00 0.00 1.52
5 6 3.472652 AGCATCTCCAACAAACACGTAA 58.527 40.909 0.00 0.00 0.00 3.18
6 7 3.064207 GAGCATCTCCAACAAACACGTA 58.936 45.455 0.00 0.00 0.00 3.57
7 8 1.873591 GAGCATCTCCAACAAACACGT 59.126 47.619 0.00 0.00 0.00 4.49
8 9 2.601481 GAGCATCTCCAACAAACACG 57.399 50.000 0.00 0.00 0.00 4.49
17 18 9.999040 AAACTCGGTTTTGTTAGAGCATCTCCA 62.999 40.741 0.00 0.00 37.35 3.86
18 19 7.730663 AAACTCGGTTTTGTTAGAGCATCTCC 61.731 42.308 0.00 0.00 37.35 3.71
19 20 5.179555 AAACTCGGTTTTGTTAGAGCATCTC 59.820 40.000 0.00 0.00 37.35 2.75
20 21 5.063880 AAACTCGGTTTTGTTAGAGCATCT 58.936 37.500 0.00 0.00 40.18 2.90
21 22 5.358298 AAACTCGGTTTTGTTAGAGCATC 57.642 39.130 0.00 0.00 31.10 3.91
22 23 5.531287 AGAAAACTCGGTTTTGTTAGAGCAT 59.469 36.000 16.21 0.00 44.33 3.79
23 24 4.879545 AGAAAACTCGGTTTTGTTAGAGCA 59.120 37.500 16.21 0.00 44.33 4.26
24 25 5.419760 AGAAAACTCGGTTTTGTTAGAGC 57.580 39.130 16.21 4.14 44.33 4.09
25 26 7.253651 GCAAAAGAAAACTCGGTTTTGTTAGAG 60.254 37.037 18.14 13.81 44.29 2.43
26 27 6.528774 GCAAAAGAAAACTCGGTTTTGTTAGA 59.471 34.615 18.14 0.00 44.29 2.10
37 38 3.780902 ACCAAAGGCAAAAGAAAACTCG 58.219 40.909 0.00 0.00 0.00 4.18
42 43 5.612725 AAGATGACCAAAGGCAAAAGAAA 57.387 34.783 0.00 0.00 0.00 2.52
52 53 6.514947 TCCATCAACAAAAAGATGACCAAAG 58.485 36.000 4.12 0.00 43.28 2.77
134 137 5.719173 CATCGGATATCCTTCTCTCCTTTC 58.281 45.833 19.61 0.00 0.00 2.62
288 299 6.907853 ATGTGATCCAGATCTTATCTTCGA 57.092 37.500 13.47 0.00 37.58 3.71
289 300 9.085250 CATTATGTGATCCAGATCTTATCTTCG 57.915 37.037 13.47 0.00 37.58 3.79
372 383 2.262187 GACACGTCGCGTACATGTGC 62.262 60.000 16.04 6.17 38.32 4.57
373 384 1.670971 GGACACGTCGCGTACATGTG 61.671 60.000 9.11 14.17 38.32 3.21
374 385 1.443194 GGACACGTCGCGTACATGT 60.443 57.895 5.77 8.10 38.32 3.21
399 410 3.869272 CATCCACGGAAGCAGCGC 61.869 66.667 0.00 0.00 0.00 5.92
409 420 1.135139 ACTTCATCGTCCTCATCCACG 59.865 52.381 0.00 0.00 37.36 4.94
462 482 9.433317 CTTTGTATGTTTAGCATTATTGGTACG 57.567 33.333 0.00 0.00 38.94 3.67
525 545 9.431887 GACAAGTTTGTGATTGGTTAGTAGATA 57.568 33.333 1.62 0.00 42.43 1.98
624 644 6.019640 GCTACACGTACAAACAAGTTACAAGA 60.020 38.462 0.00 0.00 0.00 3.02
634 654 5.530712 TGAGTAATGCTACACGTACAAACA 58.469 37.500 0.00 0.00 0.00 2.83
642 662 9.788960 ATGTACATATATGAGTAATGCTACACG 57.211 33.333 19.63 0.00 0.00 4.49
665 685 9.558396 GAGTAGTTAGGACTAGTACACATATGT 57.442 37.037 8.10 1.41 41.12 2.29
666 686 9.781633 AGAGTAGTTAGGACTAGTACACATATG 57.218 37.037 8.10 0.00 41.12 1.78
727 762 6.701432 ACGTACTTGTGTATGAAGTTTAGC 57.299 37.500 0.00 0.00 38.63 3.09
803 856 3.380637 TCGAGGAGAGTACCTGTTAATGC 59.619 47.826 0.00 0.00 40.73 3.56
880 946 1.626654 CGAATTCGACGTGGCAGCTT 61.627 55.000 23.29 0.00 43.02 3.74
903 969 7.789831 TCTTTATATAGGGGTTCTGATCACAGT 59.210 37.037 0.00 0.00 43.81 3.55
904 970 8.195165 TCTTTATATAGGGGTTCTGATCACAG 57.805 38.462 0.00 0.00 44.66 3.66
905 971 7.235606 CCTCTTTATATAGGGGTTCTGATCACA 59.764 40.741 1.03 0.00 30.62 3.58
970 1052 0.682532 TTCTTGGTGCTGGTTGTGCA 60.683 50.000 0.00 0.00 38.19 4.57
971 1053 0.459489 TTTCTTGGTGCTGGTTGTGC 59.541 50.000 0.00 0.00 0.00 4.57
972 1054 2.094286 TGTTTTCTTGGTGCTGGTTGTG 60.094 45.455 0.00 0.00 0.00 3.33
973 1055 2.175202 TGTTTTCTTGGTGCTGGTTGT 58.825 42.857 0.00 0.00 0.00 3.32
974 1056 2.957491 TGTTTTCTTGGTGCTGGTTG 57.043 45.000 0.00 0.00 0.00 3.77
975 1057 3.971245 TTTGTTTTCTTGGTGCTGGTT 57.029 38.095 0.00 0.00 0.00 3.67
976 1058 3.971245 TTTTGTTTTCTTGGTGCTGGT 57.029 38.095 0.00 0.00 0.00 4.00
999 1095 2.879026 CCTGGTGCTCATCATCTTCATG 59.121 50.000 0.00 0.00 0.00 3.07
1095 1191 1.975407 GCACTCCATGTTGCTGCCT 60.975 57.895 0.00 0.00 0.00 4.75
1243 1345 1.379710 TGCAGCACTGGTTGTTGGT 60.380 52.632 0.00 0.00 36.94 3.67
1254 1356 3.121030 CCGTACTGGCTGCAGCAC 61.121 66.667 37.63 25.87 44.36 4.40
1802 1916 2.473609 GCAATATTTCCATGCATGCACG 59.526 45.455 25.37 16.18 39.81 5.34
1966 2086 3.870633 AGGGAGTAATGTCGTGAGAAC 57.129 47.619 0.00 0.00 45.01 3.01
1967 2087 4.566004 CAAAGGGAGTAATGTCGTGAGAA 58.434 43.478 0.00 0.00 45.01 2.87
1974 2094 3.944087 ACTGAGCAAAGGGAGTAATGTC 58.056 45.455 0.00 0.00 0.00 3.06
1975 2095 5.499004 TTACTGAGCAAAGGGAGTAATGT 57.501 39.130 0.00 0.00 0.00 2.71
2053 2263 9.638239 CAAGTATGCAACCTAAACACAAAATAT 57.362 29.630 0.00 0.00 0.00 1.28
2055 2265 7.721402 TCAAGTATGCAACCTAAACACAAAAT 58.279 30.769 0.00 0.00 0.00 1.82
2150 2364 9.168451 TGTAGCGAGGTATCAAAATTCATTTTA 57.832 29.630 0.00 0.00 37.86 1.52
2154 2368 6.038271 GGTTGTAGCGAGGTATCAAAATTCAT 59.962 38.462 0.00 0.00 0.00 2.57
2155 2369 5.353123 GGTTGTAGCGAGGTATCAAAATTCA 59.647 40.000 0.00 0.00 0.00 2.57
2158 2372 4.839121 TGGTTGTAGCGAGGTATCAAAAT 58.161 39.130 0.00 0.00 0.00 1.82
2165 2379 5.410355 AAAACTATGGTTGTAGCGAGGTA 57.590 39.130 0.00 0.00 35.63 3.08
2166 2380 3.975168 AAACTATGGTTGTAGCGAGGT 57.025 42.857 0.00 0.00 35.63 3.85
2171 2385 8.129211 CCTGCTATTTAAAACTATGGTTGTAGC 58.871 37.037 0.00 6.05 35.63 3.58
2172 2386 8.129211 GCCTGCTATTTAAAACTATGGTTGTAG 58.871 37.037 0.00 0.00 35.63 2.74
2174 2388 6.663523 AGCCTGCTATTTAAAACTATGGTTGT 59.336 34.615 0.00 0.00 35.63 3.32
2175 2389 7.100458 AGCCTGCTATTTAAAACTATGGTTG 57.900 36.000 0.00 0.00 35.63 3.77
2176 2390 8.850156 CATAGCCTGCTATTTAAAACTATGGTT 58.150 33.333 8.90 0.00 37.16 3.67
2203 2417 2.774799 GCAGGGTGCCGCTATTTGG 61.775 63.158 0.00 0.00 37.42 3.28
2204 2418 1.718757 GAGCAGGGTGCCGCTATTTG 61.719 60.000 0.00 0.00 46.52 2.32
2205 2419 1.452108 GAGCAGGGTGCCGCTATTT 60.452 57.895 0.00 0.00 46.52 1.40
2206 2420 2.190578 GAGCAGGGTGCCGCTATT 59.809 61.111 0.00 0.00 46.52 1.73
2207 2421 2.196997 TTTGAGCAGGGTGCCGCTAT 62.197 55.000 0.00 0.00 46.52 2.97
2208 2422 2.196997 ATTTGAGCAGGGTGCCGCTA 62.197 55.000 0.00 0.00 46.52 4.26
2209 2423 2.196997 TATTTGAGCAGGGTGCCGCT 62.197 55.000 0.00 0.00 46.52 5.52
2210 2424 1.312371 TTATTTGAGCAGGGTGCCGC 61.312 55.000 0.00 0.00 46.52 6.53
2211 2425 0.451783 GTTATTTGAGCAGGGTGCCG 59.548 55.000 0.00 0.00 46.52 5.69
2212 2426 1.839424 AGTTATTTGAGCAGGGTGCC 58.161 50.000 0.00 0.00 46.52 5.01
2213 2427 4.214332 GCTATAGTTATTTGAGCAGGGTGC 59.786 45.833 0.84 0.00 45.46 5.01
2214 2428 4.449068 CGCTATAGTTATTTGAGCAGGGTG 59.551 45.833 0.84 0.00 32.55 4.61
2215 2429 4.632153 CGCTATAGTTATTTGAGCAGGGT 58.368 43.478 0.84 0.00 32.55 4.34
2216 2430 3.433615 GCGCTATAGTTATTTGAGCAGGG 59.566 47.826 0.00 0.00 32.55 4.45
2217 2431 4.058124 TGCGCTATAGTTATTTGAGCAGG 58.942 43.478 9.73 0.00 32.55 4.85
2218 2432 5.261370 CTGCGCTATAGTTATTTGAGCAG 57.739 43.478 9.73 0.00 42.48 4.24
2219 2433 3.494626 GCTGCGCTATAGTTATTTGAGCA 59.505 43.478 9.73 0.00 32.55 4.26
2220 2434 3.120511 GGCTGCGCTATAGTTATTTGAGC 60.121 47.826 9.73 3.70 0.00 4.26
2221 2435 4.058124 TGGCTGCGCTATAGTTATTTGAG 58.942 43.478 9.73 0.00 0.00 3.02
2222 2436 4.066646 TGGCTGCGCTATAGTTATTTGA 57.933 40.909 9.73 0.00 0.00 2.69
2223 2437 5.446473 GCTATGGCTGCGCTATAGTTATTTG 60.446 44.000 23.70 8.27 46.83 2.32
2224 2438 4.631813 GCTATGGCTGCGCTATAGTTATTT 59.368 41.667 23.70 0.00 46.83 1.40
2225 2439 4.184629 GCTATGGCTGCGCTATAGTTATT 58.815 43.478 23.70 0.00 46.83 1.40
2226 2440 3.735208 CGCTATGGCTGCGCTATAGTTAT 60.735 47.826 23.70 0.00 46.83 1.89
2227 2441 2.415491 CGCTATGGCTGCGCTATAGTTA 60.415 50.000 23.70 0.00 46.83 2.24
2228 2442 1.670087 CGCTATGGCTGCGCTATAGTT 60.670 52.381 23.70 0.00 46.83 2.24
2229 2443 0.109086 CGCTATGGCTGCGCTATAGT 60.109 55.000 23.70 0.00 46.83 2.12
2231 2445 4.889427 CGCTATGGCTGCGCTATA 57.111 55.556 9.73 1.63 46.72 1.31
2247 2461 4.923871 ACAAAATAGCGACATATAGCCTCG 59.076 41.667 0.00 0.00 0.00 4.63
2248 2462 7.884816 TTACAAAATAGCGACATATAGCCTC 57.115 36.000 0.00 0.00 0.00 4.70
2249 2463 8.848474 AATTACAAAATAGCGACATATAGCCT 57.152 30.769 0.00 0.00 0.00 4.58
2250 2464 9.893305 AAAATTACAAAATAGCGACATATAGCC 57.107 29.630 0.00 0.00 0.00 3.93
2295 2509 9.772973 TTGAACAGTGTGTCACTAAATAGTATT 57.227 29.630 4.27 0.00 43.43 1.89
2296 2510 9.772973 TTTGAACAGTGTGTCACTAAATAGTAT 57.227 29.630 4.27 0.00 43.43 2.12
2297 2511 9.037737 GTTTGAACAGTGTGTCACTAAATAGTA 57.962 33.333 4.27 0.00 43.43 1.82
2298 2512 7.012044 GGTTTGAACAGTGTGTCACTAAATAGT 59.988 37.037 4.27 0.00 43.43 2.12
2301 2515 5.220777 CGGTTTGAACAGTGTGTCACTAAAT 60.221 40.000 4.27 0.00 43.43 1.40
2303 2517 3.619483 CGGTTTGAACAGTGTGTCACTAA 59.381 43.478 4.27 0.00 43.43 2.24
2306 2520 2.004017 TCGGTTTGAACAGTGTGTCAC 58.996 47.619 0.00 0.00 34.10 3.67
2307 2521 2.388310 TCGGTTTGAACAGTGTGTCA 57.612 45.000 0.00 0.08 0.00 3.58
2308 2522 5.007332 ACTTTATCGGTTTGAACAGTGTGTC 59.993 40.000 0.00 0.00 0.00 3.67
2309 2523 4.879545 ACTTTATCGGTTTGAACAGTGTGT 59.120 37.500 0.00 0.00 0.00 3.72
2311 2525 5.668558 GACTTTATCGGTTTGAACAGTGT 57.331 39.130 0.00 0.00 0.00 3.55
2349 2563 8.402472 CGGTTTTCATGAAACTGGCTATAATAA 58.598 33.333 20.35 0.00 46.38 1.40
2350 2564 7.925993 CGGTTTTCATGAAACTGGCTATAATA 58.074 34.615 20.35 0.00 46.38 0.98
2351 2565 6.795399 CGGTTTTCATGAAACTGGCTATAAT 58.205 36.000 20.35 0.00 46.38 1.28
2352 2566 6.189677 CGGTTTTCATGAAACTGGCTATAA 57.810 37.500 20.35 0.00 46.38 0.98
2353 2567 5.811399 CGGTTTTCATGAAACTGGCTATA 57.189 39.130 20.35 0.56 46.38 1.31
2354 2568 4.701956 CGGTTTTCATGAAACTGGCTAT 57.298 40.909 20.35 0.00 46.38 2.97
2360 2574 1.000274 GCTGCCGGTTTTCATGAAACT 60.000 47.619 20.35 0.00 45.55 2.66
2361 2575 1.269517 TGCTGCCGGTTTTCATGAAAC 60.270 47.619 20.35 14.54 45.53 2.78
2362 2576 1.035923 TGCTGCCGGTTTTCATGAAA 58.964 45.000 16.91 16.91 0.00 2.69
2363 2577 1.035923 TTGCTGCCGGTTTTCATGAA 58.964 45.000 3.38 3.38 0.00 2.57
2364 2578 1.035923 TTTGCTGCCGGTTTTCATGA 58.964 45.000 1.90 0.00 0.00 3.07
2365 2579 1.863267 TTTTGCTGCCGGTTTTCATG 58.137 45.000 1.90 0.00 0.00 3.07
2366 2580 2.611225 TTTTTGCTGCCGGTTTTCAT 57.389 40.000 1.90 0.00 0.00 2.57
2367 2581 2.208431 CATTTTTGCTGCCGGTTTTCA 58.792 42.857 1.90 0.00 0.00 2.69
2368 2582 1.069973 GCATTTTTGCTGCCGGTTTTC 60.070 47.619 1.90 0.00 33.44 2.29
2369 2583 0.943673 GCATTTTTGCTGCCGGTTTT 59.056 45.000 1.90 0.00 33.44 2.43
2370 2584 2.615774 GCATTTTTGCTGCCGGTTT 58.384 47.368 1.90 0.00 33.44 3.27
2371 2585 4.359475 GCATTTTTGCTGCCGGTT 57.641 50.000 1.90 0.00 33.44 4.44
2376 2590 1.881591 TTTGAGGGCATTTTTGCTGC 58.118 45.000 0.00 0.00 38.93 5.25
2377 2591 2.160813 GCATTTGAGGGCATTTTTGCTG 59.839 45.455 0.00 0.00 34.73 4.41
2378 2592 2.429478 GCATTTGAGGGCATTTTTGCT 58.571 42.857 0.00 0.00 34.73 3.91
2379 2593 1.469703 GGCATTTGAGGGCATTTTTGC 59.530 47.619 0.00 0.00 0.00 3.68
2380 2594 1.733360 CGGCATTTGAGGGCATTTTTG 59.267 47.619 0.00 0.00 0.00 2.44
2381 2595 1.945355 GCGGCATTTGAGGGCATTTTT 60.945 47.619 0.00 0.00 0.00 1.94
2382 2596 0.391528 GCGGCATTTGAGGGCATTTT 60.392 50.000 0.00 0.00 0.00 1.82
2383 2597 1.218854 GCGGCATTTGAGGGCATTT 59.781 52.632 0.00 0.00 0.00 2.32
2384 2598 1.952102 CTGCGGCATTTGAGGGCATT 61.952 55.000 1.75 0.00 32.55 3.56
2385 2599 2.362760 TGCGGCATTTGAGGGCAT 60.363 55.556 0.00 0.00 0.00 4.40
2386 2600 3.063704 CTGCGGCATTTGAGGGCA 61.064 61.111 1.75 0.00 0.00 5.36
2387 2601 2.158561 AAACTGCGGCATTTGAGGGC 62.159 55.000 1.75 0.00 0.00 5.19
2388 2602 0.318120 AAAACTGCGGCATTTGAGGG 59.682 50.000 1.75 0.00 0.00 4.30
2389 2603 1.669795 GGAAAACTGCGGCATTTGAGG 60.670 52.381 1.75 0.00 0.00 3.86
2390 2604 1.701704 GGAAAACTGCGGCATTTGAG 58.298 50.000 1.75 0.00 0.00 3.02
2391 2605 0.039617 CGGAAAACTGCGGCATTTGA 60.040 50.000 1.75 0.00 0.00 2.69
2392 2606 0.039617 TCGGAAAACTGCGGCATTTG 60.040 50.000 1.75 0.00 0.00 2.32
2393 2607 0.671251 TTCGGAAAACTGCGGCATTT 59.329 45.000 1.75 0.26 0.00 2.32
2394 2608 0.671251 TTTCGGAAAACTGCGGCATT 59.329 45.000 1.75 0.00 0.00 3.56
2395 2609 0.887933 ATTTCGGAAAACTGCGGCAT 59.112 45.000 7.33 0.00 0.00 4.40
2396 2610 0.039617 CATTTCGGAAAACTGCGGCA 60.040 50.000 7.33 1.29 0.00 5.69
2397 2611 0.039527 ACATTTCGGAAAACTGCGGC 60.040 50.000 7.33 0.00 0.00 6.53
2398 2612 2.723618 CGTACATTTCGGAAAACTGCGG 60.724 50.000 7.33 0.00 0.00 5.69
2399 2613 2.492001 CGTACATTTCGGAAAACTGCG 58.508 47.619 7.33 6.99 0.00 5.18
2431 2645 9.125026 CCTCCTACTTATTTTTGTGCTCAATAT 57.875 33.333 1.43 2.54 33.32 1.28
2432 2646 7.067008 GCCTCCTACTTATTTTTGTGCTCAATA 59.933 37.037 1.43 0.00 33.32 1.90
2433 2647 6.127619 GCCTCCTACTTATTTTTGTGCTCAAT 60.128 38.462 1.43 0.00 33.32 2.57
2434 2648 5.183140 GCCTCCTACTTATTTTTGTGCTCAA 59.817 40.000 0.00 0.00 0.00 3.02
2435 2649 4.700213 GCCTCCTACTTATTTTTGTGCTCA 59.300 41.667 0.00 0.00 0.00 4.26
2436 2650 4.944317 AGCCTCCTACTTATTTTTGTGCTC 59.056 41.667 0.00 0.00 0.00 4.26
2437 2651 4.702131 CAGCCTCCTACTTATTTTTGTGCT 59.298 41.667 0.00 0.00 0.00 4.40
2438 2652 4.700213 TCAGCCTCCTACTTATTTTTGTGC 59.300 41.667 0.00 0.00 0.00 4.57
2439 2653 5.940470 AGTCAGCCTCCTACTTATTTTTGTG 59.060 40.000 0.00 0.00 0.00 3.33
2440 2654 6.128138 AGTCAGCCTCCTACTTATTTTTGT 57.872 37.500 0.00 0.00 0.00 2.83
2441 2655 8.561738 TTTAGTCAGCCTCCTACTTATTTTTG 57.438 34.615 0.00 0.00 0.00 2.44
2442 2656 9.755122 ATTTTAGTCAGCCTCCTACTTATTTTT 57.245 29.630 0.00 0.00 0.00 1.94
2444 2658 9.833917 GTATTTTAGTCAGCCTCCTACTTATTT 57.166 33.333 0.00 0.00 0.00 1.40
2445 2659 8.430431 GGTATTTTAGTCAGCCTCCTACTTATT 58.570 37.037 0.00 0.00 0.00 1.40
2446 2660 7.790314 AGGTATTTTAGTCAGCCTCCTACTTAT 59.210 37.037 0.00 0.00 0.00 1.73
2447 2661 7.130775 AGGTATTTTAGTCAGCCTCCTACTTA 58.869 38.462 0.00 0.00 0.00 2.24
2448 2662 5.965091 AGGTATTTTAGTCAGCCTCCTACTT 59.035 40.000 0.00 0.00 0.00 2.24
2449 2663 5.530243 AGGTATTTTAGTCAGCCTCCTACT 58.470 41.667 0.00 0.00 0.00 2.57
2450 2664 5.873146 AGGTATTTTAGTCAGCCTCCTAC 57.127 43.478 0.00 0.00 0.00 3.18
2451 2665 6.886178 AAAGGTATTTTAGTCAGCCTCCTA 57.114 37.500 0.00 0.00 0.00 2.94
2452 2666 5.780958 AAAGGTATTTTAGTCAGCCTCCT 57.219 39.130 0.00 0.00 0.00 3.69
2453 2667 7.933215 TTAAAAGGTATTTTAGTCAGCCTCC 57.067 36.000 0.00 0.00 40.88 4.30
2454 2668 7.968956 GCTTTAAAAGGTATTTTAGTCAGCCTC 59.031 37.037 0.00 0.00 40.88 4.70
2455 2669 7.670140 AGCTTTAAAAGGTATTTTAGTCAGCCT 59.330 33.333 12.77 0.00 40.88 4.58
2456 2670 7.827701 AGCTTTAAAAGGTATTTTAGTCAGCC 58.172 34.615 12.77 0.00 40.88 4.85
2457 2671 9.129209 CAAGCTTTAAAAGGTATTTTAGTCAGC 57.871 33.333 0.00 10.43 40.88 4.26
2467 2681 9.582648 TCTTCCTAAACAAGCTTTAAAAGGTAT 57.417 29.630 0.00 0.00 38.49 2.73
2468 2682 8.983702 TCTTCCTAAACAAGCTTTAAAAGGTA 57.016 30.769 0.00 0.00 38.49 3.08
2469 2683 7.891498 TCTTCCTAAACAAGCTTTAAAAGGT 57.109 32.000 0.00 0.00 41.85 3.50
2470 2684 8.797438 AGATCTTCCTAAACAAGCTTTAAAAGG 58.203 33.333 0.00 2.11 0.00 3.11
2471 2685 9.617975 CAGATCTTCCTAAACAAGCTTTAAAAG 57.382 33.333 0.00 0.00 0.00 2.27
2472 2686 9.349713 TCAGATCTTCCTAAACAAGCTTTAAAA 57.650 29.630 0.00 0.00 0.00 1.52
2473 2687 8.918202 TCAGATCTTCCTAAACAAGCTTTAAA 57.082 30.769 0.00 0.00 0.00 1.52
2474 2688 9.520515 AATCAGATCTTCCTAAACAAGCTTTAA 57.479 29.630 0.00 0.00 0.00 1.52
2475 2689 8.950210 CAATCAGATCTTCCTAAACAAGCTTTA 58.050 33.333 0.00 0.00 0.00 1.85
2476 2690 7.576477 GCAATCAGATCTTCCTAAACAAGCTTT 60.576 37.037 0.00 0.00 0.00 3.51
2477 2691 6.127786 GCAATCAGATCTTCCTAAACAAGCTT 60.128 38.462 0.00 0.00 0.00 3.74
2478 2692 5.356470 GCAATCAGATCTTCCTAAACAAGCT 59.644 40.000 0.00 0.00 0.00 3.74
2479 2693 5.124457 TGCAATCAGATCTTCCTAAACAAGC 59.876 40.000 0.00 0.00 0.00 4.01
2480 2694 6.549952 GTGCAATCAGATCTTCCTAAACAAG 58.450 40.000 0.00 0.00 0.00 3.16
2481 2695 5.122239 CGTGCAATCAGATCTTCCTAAACAA 59.878 40.000 0.00 0.00 0.00 2.83
2482 2696 4.631377 CGTGCAATCAGATCTTCCTAAACA 59.369 41.667 0.00 0.00 0.00 2.83
2483 2697 4.870426 TCGTGCAATCAGATCTTCCTAAAC 59.130 41.667 0.00 0.00 0.00 2.01
2484 2698 4.870426 GTCGTGCAATCAGATCTTCCTAAA 59.130 41.667 0.00 0.00 0.00 1.85
2485 2699 4.433615 GTCGTGCAATCAGATCTTCCTAA 58.566 43.478 0.00 0.00 0.00 2.69
2486 2700 3.181475 GGTCGTGCAATCAGATCTTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
2487 2701 2.419297 GGTCGTGCAATCAGATCTTCCT 60.419 50.000 0.00 0.00 0.00 3.36
2488 2702 1.936547 GGTCGTGCAATCAGATCTTCC 59.063 52.381 0.00 0.00 0.00 3.46
2489 2703 2.606725 CTGGTCGTGCAATCAGATCTTC 59.393 50.000 0.00 0.00 0.00 2.87
2490 2704 2.625737 CTGGTCGTGCAATCAGATCTT 58.374 47.619 0.00 0.00 0.00 2.40
2491 2705 1.134580 CCTGGTCGTGCAATCAGATCT 60.135 52.381 0.00 0.00 0.00 2.75
2492 2706 1.134699 TCCTGGTCGTGCAATCAGATC 60.135 52.381 0.00 0.00 0.00 2.75
2493 2707 0.904649 TCCTGGTCGTGCAATCAGAT 59.095 50.000 0.00 0.00 0.00 2.90
2494 2708 0.904649 ATCCTGGTCGTGCAATCAGA 59.095 50.000 0.00 0.00 0.00 3.27
2495 2709 1.399440 CAATCCTGGTCGTGCAATCAG 59.601 52.381 0.00 0.00 0.00 2.90
2496 2710 1.452110 CAATCCTGGTCGTGCAATCA 58.548 50.000 0.00 0.00 0.00 2.57
2497 2711 0.734889 CCAATCCTGGTCGTGCAATC 59.265 55.000 0.00 0.00 38.00 2.67
2498 2712 1.315257 GCCAATCCTGGTCGTGCAAT 61.315 55.000 0.00 0.00 45.53 3.56
2499 2713 1.971167 GCCAATCCTGGTCGTGCAA 60.971 57.895 0.00 0.00 45.53 4.08
2500 2714 2.359850 GCCAATCCTGGTCGTGCA 60.360 61.111 0.00 0.00 45.53 4.57
2501 2715 1.718757 GATGCCAATCCTGGTCGTGC 61.719 60.000 0.00 0.00 45.53 5.34
2502 2716 0.392863 TGATGCCAATCCTGGTCGTG 60.393 55.000 0.00 0.00 45.53 4.35
2503 2717 0.548031 ATGATGCCAATCCTGGTCGT 59.452 50.000 0.00 0.00 45.53 4.34
2504 2718 0.949397 CATGATGCCAATCCTGGTCG 59.051 55.000 0.00 0.00 45.53 4.79
2505 2719 1.325355 CCATGATGCCAATCCTGGTC 58.675 55.000 0.00 0.00 45.53 4.02
2506 2720 0.757935 GCCATGATGCCAATCCTGGT 60.758 55.000 10.48 0.00 45.56 4.00
2507 2721 0.757561 TGCCATGATGCCAATCCTGG 60.758 55.000 0.00 5.85 46.19 4.45
2508 2722 1.116308 TTGCCATGATGCCAATCCTG 58.884 50.000 0.00 0.00 31.15 3.86
2509 2723 1.691976 CATTGCCATGATGCCAATCCT 59.308 47.619 0.00 0.00 31.07 3.24
2510 2724 1.689813 TCATTGCCATGATGCCAATCC 59.310 47.619 0.00 0.00 34.22 3.01
2511 2725 2.750948 GTCATTGCCATGATGCCAATC 58.249 47.619 3.48 0.00 41.64 2.67
2512 2726 1.067974 CGTCATTGCCATGATGCCAAT 59.932 47.619 7.03 0.00 41.64 3.16
2513 2727 0.456628 CGTCATTGCCATGATGCCAA 59.543 50.000 7.03 0.00 41.64 4.52
2514 2728 1.385756 CCGTCATTGCCATGATGCCA 61.386 55.000 13.30 0.00 42.94 4.92
2515 2729 1.361271 CCGTCATTGCCATGATGCC 59.639 57.895 13.30 0.00 42.94 4.40
2516 2730 0.248743 CACCGTCATTGCCATGATGC 60.249 55.000 13.30 0.00 42.94 3.91
2517 2731 1.097232 ACACCGTCATTGCCATGATG 58.903 50.000 12.06 12.06 41.64 3.07
2518 2732 1.097232 CACACCGTCATTGCCATGAT 58.903 50.000 3.48 0.00 41.64 2.45
2519 2733 1.585267 GCACACCGTCATTGCCATGA 61.585 55.000 0.00 0.00 37.05 3.07
2520 2734 1.153978 GCACACCGTCATTGCCATG 60.154 57.895 0.00 0.00 0.00 3.66
2521 2735 3.277133 GCACACCGTCATTGCCAT 58.723 55.556 0.00 0.00 0.00 4.40
2524 2738 3.747976 GGGGCACACCGTCATTGC 61.748 66.667 0.00 0.00 41.60 3.56
2525 2739 1.656818 GATGGGGCACACCGTCATTG 61.657 60.000 6.26 0.00 44.33 2.82
2526 2740 1.378514 GATGGGGCACACCGTCATT 60.379 57.895 6.26 0.00 44.33 2.57
2527 2741 2.272146 GATGGGGCACACCGTCAT 59.728 61.111 6.26 0.00 44.33 3.06
2528 2742 4.386951 CGATGGGGCACACCGTCA 62.387 66.667 11.60 0.00 45.03 4.35
2529 2743 4.388499 ACGATGGGGCACACCGTC 62.388 66.667 1.52 0.67 42.04 4.79
2530 2744 4.388499 GACGATGGGGCACACCGT 62.388 66.667 10.02 10.02 41.60 4.83
2531 2745 4.386951 TGACGATGGGGCACACCG 62.387 66.667 0.00 0.00 41.60 4.94
2532 2746 2.746277 GTGACGATGGGGCACACC 60.746 66.667 0.00 0.00 39.11 4.16
2533 2747 1.298859 GAAGTGACGATGGGGCACAC 61.299 60.000 0.00 0.00 35.08 3.82
2534 2748 1.003839 GAAGTGACGATGGGGCACA 60.004 57.895 0.00 0.00 35.08 4.57
2535 2749 1.745489 GGAAGTGACGATGGGGCAC 60.745 63.158 0.00 0.00 0.00 5.01
2536 2750 2.668632 GGAAGTGACGATGGGGCA 59.331 61.111 0.00 0.00 0.00 5.36
2537 2751 2.124695 GGGAAGTGACGATGGGGC 60.125 66.667 0.00 0.00 0.00 5.80
2538 2752 2.186903 CGGGAAGTGACGATGGGG 59.813 66.667 0.00 0.00 0.00 4.96
2539 2753 2.511600 GCGGGAAGTGACGATGGG 60.512 66.667 0.00 0.00 0.00 4.00
2540 2754 2.885644 CGCGGGAAGTGACGATGG 60.886 66.667 0.00 0.00 0.00 3.51
2541 2755 0.457166 TAACGCGGGAAGTGACGATG 60.457 55.000 12.47 0.00 0.00 3.84
2542 2756 0.244450 TTAACGCGGGAAGTGACGAT 59.756 50.000 12.47 0.00 0.00 3.73
2543 2757 0.664166 GTTAACGCGGGAAGTGACGA 60.664 55.000 12.47 0.00 0.00 4.20
2544 2758 0.940519 TGTTAACGCGGGAAGTGACG 60.941 55.000 12.47 0.00 0.00 4.35
2545 2759 0.509929 GTGTTAACGCGGGAAGTGAC 59.490 55.000 12.47 0.00 0.00 3.67
2546 2760 0.600782 GGTGTTAACGCGGGAAGTGA 60.601 55.000 12.47 0.00 0.00 3.41
2547 2761 0.601841 AGGTGTTAACGCGGGAAGTG 60.602 55.000 12.47 0.00 0.00 3.16
2548 2762 0.107268 AAGGTGTTAACGCGGGAAGT 59.893 50.000 12.47 0.00 0.00 3.01
2549 2763 0.794473 GAAGGTGTTAACGCGGGAAG 59.206 55.000 12.47 0.00 0.00 3.46
2550 2764 0.603439 GGAAGGTGTTAACGCGGGAA 60.603 55.000 12.47 0.00 0.00 3.97
2551 2765 1.004679 GGAAGGTGTTAACGCGGGA 60.005 57.895 12.47 0.00 0.00 5.14
2552 2766 1.004200 AGGAAGGTGTTAACGCGGG 60.004 57.895 12.47 0.00 0.00 6.13
2553 2767 0.037605 AGAGGAAGGTGTTAACGCGG 60.038 55.000 12.47 0.00 0.00 6.46
2554 2768 1.725164 GAAGAGGAAGGTGTTAACGCG 59.275 52.381 12.77 3.53 0.00 6.01
2555 2769 2.762745 TGAAGAGGAAGGTGTTAACGC 58.237 47.619 10.77 10.77 0.00 4.84
2556 2770 4.628074 TCTTGAAGAGGAAGGTGTTAACG 58.372 43.478 0.26 0.00 0.00 3.18
2557 2771 6.072452 CCATTCTTGAAGAGGAAGGTGTTAAC 60.072 42.308 0.00 0.00 0.00 2.01
2558 2772 6.003950 CCATTCTTGAAGAGGAAGGTGTTAA 58.996 40.000 0.00 0.00 0.00 2.01
2559 2773 5.560724 CCATTCTTGAAGAGGAAGGTGTTA 58.439 41.667 0.00 0.00 0.00 2.41
2560 2774 4.401925 CCATTCTTGAAGAGGAAGGTGTT 58.598 43.478 0.00 0.00 0.00 3.32
2561 2775 3.812167 GCCATTCTTGAAGAGGAAGGTGT 60.812 47.826 4.80 0.00 0.00 4.16
2562 2776 2.751806 GCCATTCTTGAAGAGGAAGGTG 59.248 50.000 4.80 0.00 0.00 4.00
2563 2777 2.376518 TGCCATTCTTGAAGAGGAAGGT 59.623 45.455 4.80 0.00 0.00 3.50
2564 2778 3.077484 TGCCATTCTTGAAGAGGAAGG 57.923 47.619 4.80 3.01 0.00 3.46
2565 2779 3.192212 GGTTGCCATTCTTGAAGAGGAAG 59.808 47.826 4.80 0.00 0.00 3.46
2566 2780 3.157087 GGTTGCCATTCTTGAAGAGGAA 58.843 45.455 4.80 0.00 0.00 3.36
2567 2781 2.555227 GGGTTGCCATTCTTGAAGAGGA 60.555 50.000 4.80 0.00 0.00 3.71
2568 2782 1.821136 GGGTTGCCATTCTTGAAGAGG 59.179 52.381 0.00 0.00 0.00 3.69
2569 2783 2.517959 TGGGTTGCCATTCTTGAAGAG 58.482 47.619 0.00 0.00 0.00 2.85
2570 2784 2.673775 TGGGTTGCCATTCTTGAAGA 57.326 45.000 0.00 0.00 0.00 2.87
2571 2785 3.967332 AATGGGTTGCCATTCTTGAAG 57.033 42.857 0.00 0.00 35.78 3.02
2572 2786 4.220382 CAGTAATGGGTTGCCATTCTTGAA 59.780 41.667 0.00 0.00 40.39 2.69
2573 2787 3.763360 CAGTAATGGGTTGCCATTCTTGA 59.237 43.478 0.00 0.00 40.39 3.02
2574 2788 3.511146 ACAGTAATGGGTTGCCATTCTTG 59.489 43.478 0.00 0.37 40.39 3.02
2575 2789 3.763897 GACAGTAATGGGTTGCCATTCTT 59.236 43.478 0.00 0.00 40.39 2.52
2576 2790 3.245229 TGACAGTAATGGGTTGCCATTCT 60.245 43.478 0.00 0.00 40.39 2.40
2577 2791 3.088532 TGACAGTAATGGGTTGCCATTC 58.911 45.455 0.00 0.00 40.39 2.67
2578 2792 3.168035 TGACAGTAATGGGTTGCCATT 57.832 42.857 0.00 0.00 42.25 3.16
2579 2793 2.897271 TGACAGTAATGGGTTGCCAT 57.103 45.000 0.00 0.00 0.00 4.40
2580 2794 2.897271 ATGACAGTAATGGGTTGCCA 57.103 45.000 0.00 0.00 0.00 4.92
2581 2795 2.427095 GGAATGACAGTAATGGGTTGCC 59.573 50.000 0.00 0.00 0.00 4.52
2582 2796 2.427095 GGGAATGACAGTAATGGGTTGC 59.573 50.000 0.00 0.00 0.00 4.17
2583 2797 3.696051 CAGGGAATGACAGTAATGGGTTG 59.304 47.826 0.00 0.00 0.00 3.77
2584 2798 3.333680 ACAGGGAATGACAGTAATGGGTT 59.666 43.478 0.00 0.00 0.00 4.11
2585 2799 2.919602 ACAGGGAATGACAGTAATGGGT 59.080 45.455 0.00 0.00 0.00 4.51
2586 2800 3.054434 TGACAGGGAATGACAGTAATGGG 60.054 47.826 0.00 0.00 0.00 4.00
2587 2801 4.220693 TGACAGGGAATGACAGTAATGG 57.779 45.455 0.00 0.00 0.00 3.16
2588 2802 7.219322 TGATATGACAGGGAATGACAGTAATG 58.781 38.462 0.00 0.00 37.01 1.90
2589 2803 7.379059 TGATATGACAGGGAATGACAGTAAT 57.621 36.000 0.00 0.00 37.01 1.89
2590 2804 6.806668 TGATATGACAGGGAATGACAGTAA 57.193 37.500 0.00 0.00 37.01 2.24
2591 2805 6.384015 AGTTGATATGACAGGGAATGACAGTA 59.616 38.462 0.00 0.00 37.01 2.74
2592 2806 5.190528 AGTTGATATGACAGGGAATGACAGT 59.809 40.000 0.00 0.00 37.01 3.55
2593 2807 5.678583 AGTTGATATGACAGGGAATGACAG 58.321 41.667 0.00 0.00 37.01 3.51
2594 2808 5.698741 AGTTGATATGACAGGGAATGACA 57.301 39.130 0.00 0.00 37.96 3.58
2595 2809 6.352516 AGAAGTTGATATGACAGGGAATGAC 58.647 40.000 0.00 0.00 0.00 3.06
2596 2810 6.566079 AGAAGTTGATATGACAGGGAATGA 57.434 37.500 0.00 0.00 0.00 2.57
2597 2811 7.121759 ACAAAGAAGTTGATATGACAGGGAATG 59.878 37.037 0.00 0.00 39.87 2.67
2598 2812 7.177878 ACAAAGAAGTTGATATGACAGGGAAT 58.822 34.615 0.00 0.00 39.87 3.01
2599 2813 6.542821 ACAAAGAAGTTGATATGACAGGGAA 58.457 36.000 0.00 0.00 39.87 3.97
2600 2814 6.126863 ACAAAGAAGTTGATATGACAGGGA 57.873 37.500 0.00 0.00 39.87 4.20
2601 2815 6.430925 TGAACAAAGAAGTTGATATGACAGGG 59.569 38.462 0.00 0.00 39.87 4.45
2602 2816 7.439157 TGAACAAAGAAGTTGATATGACAGG 57.561 36.000 0.00 0.00 39.87 4.00
2603 2817 9.903682 ATTTGAACAAAGAAGTTGATATGACAG 57.096 29.630 6.18 0.00 39.87 3.51
2610 2824 9.820725 TGAATGAATTTGAACAAAGAAGTTGAT 57.179 25.926 6.18 0.00 39.87 2.57
2611 2825 9.086336 GTGAATGAATTTGAACAAAGAAGTTGA 57.914 29.630 6.18 0.00 39.87 3.18
2612 2826 9.090692 AGTGAATGAATTTGAACAAAGAAGTTG 57.909 29.630 6.18 0.00 43.43 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.