>input_sequence_73190
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-------------------------------------------------------ATGAAGATGATGAGCACCAGGGCCC
TCGCGCTCGGCGCGGCTGCCGTCCTCGCCTTCGCCGCGGCGACCGCTCAGGCCCAGAGGTGCGGCGAGCAAGGCAGCAAC
ATGGAGTGCCCCAACAACCTCTGCTGCAGCCAGTACGGCTACTGCGGGATGGGCGGCGACTACTGCGGCAAGGGCTGCCA
GAACGGCGCCTGCTGGACCAGCAAGCGCTGCGGCAGCCAGGCCGG------CGGCGCGACGTGCACCAACAACCAGTGCT
GCAGCCAGTACGGGTACTGCGGCTTCGGCGCCGAGTACTGCGGCGCCGGCTGCCAGGGCGGCCCCTGCCGCGCCGACATC
AAGTGCGGCAGCCAGGCCGGCGGCAAGCTGTGCCCGAACAACCTCTGCTGCAGCCAGTGGGGATTCTGCGGCCTCGGTTC
CGAGTTCTGCGGCGGCGGCTGCCAGAGCGGTGCTTGCAGCACCGACAAACCGTGCGGCAAGGACGCCGGCGGCAGGGTTT
GCACTAACAACTACTGTTGTAGCAAGTGGGGATCCTGTGGCATCGGCCCGGGCTATTGCGGTGCAGGCTGCCAGAGTGGC
GGCTGCGATGGTGTCTTCGCCGAG---GCCATCACCGCCAACTCCACT------CTTCTCCAAGAATGA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------
>chr1A_1_TraesCS1A01G326800
TATTTTTACGTGTTTGTTGGAGATGCTCTAACAAAACCGAGTTTTCTTTTGCCTTTGGTCATCTTTTTGTTGATGGATGT
GGTAAAATGTAAGGAAATATAATAAGAACC--TAGCTAATTTCTCATACCGCAAAAGAAA-GGAGAGAAGGATATCCGAT
GCGAGATGCCACTGCCAT----TG---CCATTGAATGATCACGTGAATGCATTGCTCTCCATGCCCCATGCATGTCACGC
GCACACGACTCTCAAAACTACATCTCGCATCATAGTTCGTGCTCTCATGAAAAGAAAATCGAAGATAAGATCTGGATCAC
ATAATGCATGGACGCAGAGCACAACGTTTCTCAGAGTTCACAACGATCAGGTCAGATGCTATGCACATGTACGCGACGTG
TCCGTTGGGGCGCTGCTTCCGTGGATGAGGACGATGAAGTTTCT-TACAC--------GTAATCACATGCACATACATAT
ACGTACCAATAATGCTAAACATACAAAGAGTTACACGCACTTACATGTTGACTAGGATTTTTTTTATCTACTAACCAATC
ACAAACTTGTCCTCCCTGATTTTCAGGGGAGGGTGGGCCGCCTCCCCACCTATTAACCAATTAAATTAACCCTTTTTATA
AAATCTTGTAACTTGTTTGTACGTGTAGCATTACTCATATATGTACATATGTGTACTAGTCCTA------AC-----TAC
TCTAATAGCCCGCGCTCCATGCATGTCTCATGCAAGC----GC-----TAAACTTCATACACAAGTACGTAGTCGTAC--
---------TGCCGCGTCCATCAAAAACGGATCTGGCATC-ATATCACAT-GCATGCATTAACAGGTACTCTC------C
-TCGATCAGGTTAATCTCGTTGACGAT--GGGCGAA-CACGTGTCTGCGCCCCATGCATGGC---AAGCTGCCACGTCGA
ATTCGACTACTGTGA--------TCAGAACCCCTATATAAAGAGGGGAT--CATCACCTGTTTACTCCACACACACA---
---CACACAAGTGCACAACCAGCACCAAG--------------AAAACAAAAAGCATGAAGATGATGAGCACCAGGGCCC
TCGCGCTCGGCGCGGCTGCCGTCCTCGCCTTCGCCGCGGCGACCGCTCAGGCCCAGAGGTGCGGCGAGCAAGGCAGCAAC
ATGGAGTGCCCCAACAACCTCTGCTGCAGCCAGTACGGCTACTGCGGGATGGGCGGCGACTACTGCGGCAAGGGCTGCCA
GAACGGCGCCTGCTGGACCAGCAAGCGCTGCGGCAGCCAGGCCGG------CGGCGCGACGTGCACCAACAACCAGTGCT
GCAGCCAGTACGGGTACTGCGGCTTCGGCGCCGAGTACTGCGGCGCCGGCTGCCAGGGCGGCCCCTGCCGCGCCGACATC
AAGTGCGGCAGCCAGGCCGGCGGCAAGCTGTGCCCGAACAACCTCTGCTGCAGCCAGTGGGGATTCTGCGGCCTCGGTTC
CGAGTTCTGCGGCGGCGGCTGCCAGAGCGGTGCTTGCAGCACCGACAAACCGTGCGGCAAGGACGCCGGCGGCAGGGTTT
GCACTAACAACTACTGTTGTAGCAAGTGGGGATCCTGTGGCATCGGCCCGGGCTATTGCGGTGCAGGCTGCCAGAGTGGC
GGCTGCGATGGTGTCTTCGCCGAG---GCCATCACCGCCAACTCCACT------CTTCTCCAAGAATGATGATCAATCTT
GCTATGGCAGTATTGCAACGACGAATAATCCGTGGCAATCTCATTGCCACCTACGG-TTTCCCTTCACTTACTTTTAG-A
GTA-CTAGTCCTTAATAATTCTCTAGCTTGCAATATGATGTGCAGGTTACTGCAGCAGAAACAAAATATTGCTGTCGTGC
ATGCATGGAAATATTGCAGTGAGAAAGTACTGTGTGGCAATATAGGGTGTGCTATTGTTGCCGCAAATT-AGTT-TTCTT
GTTATGACCTGTTGTCAGGATGCATGCATG----GCTGTTGTAATGTTGGAGTACTTCGTGATTTCGTTGCAATATATTA
CCATGGTTCTCACGACATTACTCCCTTTGCTCAGTAAAAGTAAAAGTGGTAGTCTTGCATAAGTATTGTTAG--------
---------------------A----------------------------------------------------------
---TATTTGTACAAATGTTCAAATATTTTGTGTTTAGGTTGCATACTTGAAAACCATAAGTATACATATAGATTAGTTTA
TAAAAATATTTTCCCAAT----ATGTAGTTCTTTTAGTACTAATAAAATGAATTTTGATACCTCGCTACAACCATAGTTT
TAAATAGCAGGCTATGCCAAATAGCGGCACCCTGCTCAAATAACTATAGCGCAGCCATAGCGAGGCTATATGTCGCTATT
TTGTAATTTTATAGAACAATCACACATTAATACTATTTAGTGACACACTGTTCAAACCGATAAAGTCGGCTATTTAAAAC
TTTTATTATAGCCAGTTTCATGAAAACCGGCAGCAAAAATGCCCTCAAATGCCGCAGTTTTCCGAAATGTACGGTCTACA
AAAAATATTGAGCACAAAAATAAGTAGGAGGCTGACTAAAATACCTTTTAAAGCTTGTTTAGGAAGATCTGATTGCACGA
CCAGGATTGGCATCATGGCAATGACGGTGTGCCCCATCGTCACTTCCCGCGTTAACACCTTCCTCTTCAAGAATGGCAAC
CCATTACTGTCATTCCCTGTCATATCAACTTCTTTGTTCAAATTCATTCACT
>chr1D_26
CTCGTA------------------------ACAAAACTGAGTCTTCCTTTGCGTTTGGTCATCTTTTTGTTGATGGATGT
GGTAAAATGT----AAATATAATAAGAACC--TAGCTAATTTCTCATACCGCAAAA-AAA-GGAGAGAAGGATATCCGAT
GCGAGATGCCACTGCCATGCATTG---CCATTGAATGATCACGTGAATGCATTGCTCTCCATGCC-CATGCGTGTCACGC
GCCCACGACTCTCAAAACTACATCTCGCATCATAGTTCGTGCTCTCATGAAAAGAAAAGAGAAGATAAGATCCGGATAAC
ATAATGCATGGACGCAGAGCACAACGTTTCTCAGAGTTCACGACGATCAGGTCAGATGCTATAT--ATGCACGCGACGTG
TCCGTCGGGACGCTGCTTCTGTGGATGAGGACGACGAAGTTTCGATACAC--------GTAATCACATGCATTAATGCAT
ATATACAGTACG--------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATGTGTACTAGTCCTA------AC-----TAC
TCTAATAGCCCGCGCTCCATGCATGTCTCATGCAAGC----AC-----TAAACTTCATACACAAGTACGTAATCGTAC--
---------TGCCGCGTCCATCAAAAACGGATCTGGCATC-ACATCACAT-GCAT----TAACGGGTACTCTC------C
-TCGATCAGGTTAATTCCGTTGACGAT--GGGAGAA-CACGTGTCTGCGGCTCATGCATGGC---GAGCTGCCACGTCGA
ACTGGACT---GTAG--------TCAGAACCCCTATATAAAGAGGGGAT--CAGGGCCTGTTTACTCCAC-----CACAC
AACTGCACAA--------CCAGCACCAAG--------------AGA--AATAATGAGAAAGATGATGAGCACCATGGCCC
TTACGCTCGGCGCGGCTGTCTTCCTCGCCTTCGCCGCGGCGACCGCGCAGGCCCAGAGGTGCGGCGAGCAGGGCAGCAAC
ATGGAGTGCCCCAACAACCTCTGCTGCAGCCAGTACGGGTACTGCGGCATGGGCGGCGACTACTGCGGCAAGGGCTGCCA
GAACGGCGCCTGCTGGACCAGCAAGCGCTGCGGCAGCCAGGCCGG------CGGGGCGACGTGTCCCAACAACCACTGCT
GCAGCCAGTACGGGCACTGCGGCTTCGGAGCCGAGTACTGCGGCGCCGGCTGCCAGGGCGGCCCCTGCCGCGCCGACATC
AAGTGCGGCAGCCAGTCCGGCGGCAAGCTATGCCCGAACAACCTCTGCTGCAGCCAGTGGGGATTCTGCGGCCTAGGTTC
CGAGTTCTGCGGCGGTGGCTGCCAGAGCGGTGCTTGCAGCACCGACAAGCCGTGCGGCAAGGACGCCGGCGGCAGGGTTT
GCACTAACAACTACTGTTGTAGCAAGTGGGGATCCTGTGGCATCGGCCCGGGCTATTGCGGTGCAGGCTGCCAGAGCGGC
GGCTGTGACGCTGTCTTTGCCGGC---GCCATCACCGCCAACTCCACT------CTTCTCGCAGAATGATGATCGACCTT
CCTATGGCAGTATTGCAACGACGAATAATCCGTGGCAGTTTCATTGCCACGTACGG-TTTCCCTTCACTTACTTTTAGCA
TTAGCTAGTACTTAATAATTCTCTAGCTTGCAATGTGACATGCAGGTTACTGCAGCAGAAACAAAATATTGCTGTGGTAC
ATGCATGGGAATATTGCAGTGAGAAAGTACTGTGTGGCAATATAGGGTGTACTATTGTTGCCGCAAATTTAGTT-TTCTT
GTTATGACCTGTTGTCAGG----ATGCATGCATCGCTGTTGTAATGTTGGAGTACTTCGTGATTTCGTTGCAATATATTA
CCATGAGCATCACATCATTACTCCCTTTGCTCAGTGAAAGTAAAAGTGT-AGTCTTGCATAAGTATTGTTA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr1B_28
---------------------------CTAACAAAACTGAT--TTCTTTTACGTTTGGTCATCTTTTTGTTGATGGATGT
GGTAAAATGT----AAATATAATAAGAACCTATAGCTAATTTCTCATACCGCAAAA-AAAAGGAGAGAAGGATATCCGAT
GCGAGATGACACTGCCAT----TG---CCATTGAATGATCGCGTGAATGCATTGCTCTCCATGCCACATGCATGTCACGC
GCACACGACTCTCAAAACTACATCTCGCATCATAGTTCGCGCTCTCATGAAAAGAAAAGAGAAGATAAGATCTGGATCAC
ATAATGCATGGACGCAGAGCACAACGTTTCTCAGAGTTCACAACGATAAGGTCAGATGCTATAT--ATGCACGCGACGTG
TCCGTTG---------------------GGACTACGAAGTTTCGATACAC--------GTAATCACATGCATATACATAT
ATT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TGTACTAGTCCTA------ACTACAGTAC
TCTAATAGCCCGCGCTCCATGCATGTCTCATGCAATGCAAGCACTAATTAGACTTCATACACAAGTACGTAGTCGTAC--
---------TGCCGCATCCATCAAAAACGGATCTGGCATC-ATATCACAT-GCAT----TAACACGTACACTC------C
-TCGATCAGGTTAATTTCGTTGAATAT--GGGCGAA-CACGTGTCTGCGCCCCATGCATGGC---GAGCTGCCACGTCGA
ATTCGACT---GTGA--------TCAGAACCCCTATATAAAG-GGGGAT--CATCACCTGTTTACTCCACACACACACAC
AAGTGCACAA--------CCAGCACCAAG--------------AAAACAAAAAGGATGAAGATGATGAGCACCAGGGCCC
TCGCGCTCGGCGCGGCTGCCGTCCTCGCCTTCGCCGCGGCGACCGCTCAGGCCCAAAGGTGCGGCGAGCAGGGCAGCGGC
ATGGAGTGCCCCAACAACCTGTGCTGCAGCCAGTACGGCTACTGCGGGATGGGCGGCGATTACTGCGGCAAGGGCTGCCA
GAACGGCGCCTGCTGGACCAGCAAGCGCTGTGGCAGCCAGGCCGG------CGGCAAGACGTGCCCCAACAACCACTGCT
GCAGCCAGTACGGGCACTGCGGCTTCGGCGCGGAGTACTGCGGCGCCGGCTGCCAGGGCGGCCCCTGCCGCGCCGACATC
AAGTGCGGCAGCCAGGCCGGCGGCAAGCTGTGCCCGAACAACCTCTGCTGCAGCCAGTGGGGGTACTGCGGCCTCGGTTC
CGAGTTCTGCGGCGAGGGCTGCCAGAACGGCGCTTGCAGCACCGACAAGCCCTGTGGCAAGGACGCCGGCGGCAGGGTTT
GCACTAACAACTACTGCTGTAGCAAGTGGGGATCCTGTGGCATCGGTCCCGGCTACTGCGGTGCAGGCTGCCAGAGCGGC
GGCTGCGATGGTGTCTTCGCCGAG---GCCATCGCCACCAACTCCACT------CTTCTCGCAGAATGATGATCTTGCTA
---ATGGTAGTATTGCAACGACGAATAATCCGTGGCAGTTCCATTGCCACGTACGGTTTTCCCTTCACTTACTTT---TA
GTA-CTAGTACTTAATAATTCTCTAGCTTGCAATATGACATGCAGGTTACTGCAGCAGAAACAAAATATTGCTGTAGTAC
ATGCATGGAAATATTACCGAGAG-AAGTGATGTGTGGCAATATAGAGTGTACTATTGTTGCCACAAATT-AGTG-TTCTT
GTTATGACCTGCTGTCAGGATGCATGCATGCATCGCTGTTGTAATGTTGGAGTACTTCGTGATATCGTTGCAATATATTA
CCATGAGTGTCACATCATTACTCCCTTCGCTCAGTAAAAGTAAAAGTGTAAGTCTTGCATAATAT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr1D_145
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAGGATATCCGGT
GCGAGATGCCACTGCCAT----TTTTTCCATTAATTGGTCACGTGCATGCAGCTCTCT-------CCATGCATGTCACGC
CCACACGACTCTCAAAACTACATCTCGCATCATAGTACGTGCTCTCATCAGAAGAAAA---AGGATAAGATCTCCATCAT
ATAT--CATGGACGCAGAGCACAACGTC----------CACATCGATCAGATGC-----------CATGCACGCGACGTG
TCCGTTG---------------------GGTTGCTTCTGTGGATGGGGACGACGAGGTGTAATCACATGCATATGCGTAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTACTAGTCCTATAAGTTAC-----TAC
TCTAATAGCTCGCGCTCCATGCATGTCTCATGCAAGCATGCA------TAAATAGCATATAAACATTACGAATCTTACGT
ACAGTGCAGTGCCACATCTATCAAGAACGGATCTGGCATCAATATCACATCGCATACATTAACAATCTCCTCGATCAGAT
GA---TCGGGTTGAGATCGTTGACAAC--GAGTGAAACACGTGTATGCTCGCAATTGCATGGCAAGAGGTGCCACGTCGA
ACTGGACT---GTAACCAGAAGTTCAGAGCGCTTATATAAAGTGGGGAT--CACG---TGTTTACTCCACC----CACAC
AAGCACACAA--------CCAGCACTTGATCGACAAGCCAGT---AAGAAAAGGGAAGAAGATGATGAGCACCAGGGCCC
TCGCTCTCGGCGCGGCTGTCGTCCTCGCCTTCGCCGCGGCGACCGCGCACGCCCAGAGGTGCGGCGAGCAGGGCAGCGGC
ATGGAGTGCCCTAACAACCTCTGCTGCAGCCAGTACGGGTACTGCGGCATGGGCGGCGACTACTGCGGCAACGGCTGCCA
GAACGGCGCCTGCTACACCAGCAAGCGCTGCGGCACCCAGGCCGC------CGGCGCGACCTGCCCTAACAACCACTGCT
GCAGCCAGTATGGGCACTGCGGCTTCGGCGAGGAGTACTGCGGCGCCGGCTGCCAGGGCGGCCCCTGCCGCGCCAACATC
AAGTGCGGCAGCCAGGCCGGTGGCAAGCTATGCCCCAACAACCTCTGCTGCAGCCAGTGGGGTTACTGCGGCCTCGGTTC
CGAGTTCTGCAGCAACGGCTGCCAAAGCGGCGCCTGCAGCTCCTCCAAGCCGTGCGGTAAGGACAATGGTGGCAGGGTTT
GCACTAACAACTATTGTTGTAGTCAGTGGGGCCATTGTGGCATCGGCCCGGGCTACTGTGGTGCAGGCTGCCAGAGCGGC
GGCTGCGACGCTGTCTTCGCCGAC---GCTATCACCGCCAACTCCACC------CTTCTCAGAGAGTGAT-------CTT
GCCATGGCAGTATTGCAACAACAAATAATCCGTGGCAGTCTCATTGCCACATACGG-TTTCCCTTCAGTTACTTTTAGTA
GTA-CTAGTCCGTAATAATTCTCTAGCTTGCAATATGACATGCAGGTTACTGCAACAGTTACAAAATATTGTTGTGGTGC
ATGCATGGGTATATTACAGTGAG-AAGTACTGTGTGGCAATATAGGGTGTGCTATTGTTGCCACAAATTTAGTTTCTCTT
GGTACCCTCTGTTGTCGGG----ATGCATGCATCCCGGTTGTAATGTTGCAGTACTATGTGATTTCGTTGCAATACATTA
CCATG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>chr1D_468
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------CAATAATGCTAAACATACAAAGAGTTACACGCAATTACACGCTGACTAGGATTTTTTTCATCTACTAACCAATC
ACAAACTTG-CCCCCCTGATTTTCAGGAGGGG-TGGGCCGCCTCCCCACCGATTAACCAATCAAATTAACCCTCTTTGTA
AAACCTTGTAACTCGTTTGTATGTGTAGCATTACTC--------------------------------------------
---------------------------CCTAGCAATA----A------TGCTAAACATACAAAGAG--------------
--------------------------------------------TTACAC-GCAA----TTACACGCTGACTAGGATTTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TTCATCTACTAACCAGT---CACAAACTTGCCCCCCTGATTTTTAGGAG------
--------GGCTGGGCCGCCTCCCCACCTATTGACCAATCAAATTAACCCTCTTTGTAAAACCTTGTAACTCGTTT----
--------------------------------GTACGGGTAACATTACT-------------------------------
----------------------------------------------------------------CCCTAGCAATAATGCT
AAACATACAAAGAGTTATACGCAATTACACGCTGACTAGGATTTTTTTCATCTACTAACCAATCACAAACTTGCCCTCCT
GATTTTCAGGAGGGGTGGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CCGCCTCCCCACCT------ATTGACCAATAAAATTAACCCTCTTT
GTA-----------------------------------------------------------------------------
----------------------------------------------------------AAACCTTATAACTCGTTTGTAC
ATGTAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CATTACTCCCTAGCAATAATGCTAAACATACAAAGAGTTACACGCTGAGTAGGATTTTTTTTTCA
TCTACTAACCAATCACAAACTTGCCCCCTGATTTTCAGGAGGGGTGGGCCGCCTCCCCAGCTATTGACCAATCAAATTAA
CCCTCTTTGTAAAACCTTGTAACTCGTTTGTACGTGTAGGATTACTCCCTAGGAATAATGCTAAACATACAAAGAGTTAC
ACGCAATTACACACTGACTAGGATTTTTTTCATCTACTAACCAATCACAAACTTGCCCCCCCTGATTTTCAGGAGGGGTG
GGCCGCCTCCCCACC-----------------------------------------------------------------
---------TATTGACCAATCAAATTAACCCTCTTTGTAAAACCTTGTAACTCATTTGTACGTGTAGCATTACTC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr1B_688
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TAC
TCTAATAGTTCGCGCTCCATGCATGTCTCATGCAAGC----A------TAAACAGCATATAAACATTACGAATCTTACTT
ACAGTGCAGTGCCACATCTATCAAGAACGGATCCGGCATC-ATATCACATCGCATACATTAACAATCTCCTCGATTAGAC
-ACGATCGGGTTAAGATAGTTGAGAATGAGAGTGAAACACGTGTATGC------------------------CACATCGA
ACTGGACT---GCAATCAGAAGTTCAGAGCTCCTATATAAAGTGGGGAT--CATCACCTGTTTACTCCACACACA-----
AAGCACACAA--------CCAGCCCTAGATCGACAAGTCAAG---AAG-AAAAGGAAGAAGATGATGAACACCAGGGCTC
TCGCTCTCGGCGCGGCCGTCGTCCTCGCCTTCGCGGCGGCGACCGCGCACGCCCAGAGGTGCGGCGAGCAGGGCAGCGGC
TTGGAGTGCCCCAACAACCTCTGCTGCAGCCAGTACGGCTACTGCGGCATGGGCGGCGACTACTGCGGCAACGGCTGCCA
GAACGGCGCCTGCTACACCAGCAAACGCTGCGGCGCCCAGGCCGC------CGGCGCAGTGTGCCCCAACAACCACTGCT
GCAGCCAGTACGGGCACTGCGGGTTCGGCTCCGAGTACTGTGGTGCCGGCTGCCAGGGTGGCCCCTGCCGCGCCGACATC
AAGTGCGGCAGCCAGGCCGGCGGCAAGCTCTGCCCCAACAATCTCTGCTGCAGCCAGTGGGGTTTCTGCGGCCTCGGCTC
CGAGTTCTGCGGCGTCGGCTGCCAGAGCGGTGCTTGCAGCACCGACAAGCCGTGCGGCAAGAACGCCGGTGGCAGGGCTT
GCACAAACAACTATTGTTGCAGCCAGTGGGGATCCTGCGGTATCGGCCCGGCCTACTGCGGTGCAGGCTGCCAGAGCGGC
GGCTGTGGCTCTGTATTCGAGGCCATAGCCGCCAACTCCACCTCCACT------CTTCTCAAAGAATGAT-------CTC
GCCATGACAGTATTGCAACGACAAATAATCCGTGGCAGTCTCATTGCCACCTACGG-TTTCCCTTCAGTTACTTTTAGTA
GTA-CTAGTCCTTAATAATTCTCTAACTTGCAATATGACATGCAGGTTACTGCAGCAGTAACAAA-TATTGCTGTGGTAC
ATGCATGGAAATATTACAGTGAG-AAGTACTGCATGGCAATATGGGGTGTGCTATTGTTGCCACGAATTTAGTTTTTCTT
GTTACCTTCTGTTGTCAGG----ATGCATGCATTCCGATTGTAATGTTGGAGTACTTTGTGATTTCGTTGCAATACATTA
CCATGAGTGTCACATTATTACTCCCCTCGCTT--------------------TTGCAGGAAGAATAAGGTCAAATTTTGA
TATTTAGACTAGTATAGGAGTA----------------------------------------------------------
---TATCTCTACAAATGTTTACCTTTTTTATGTTTAGGCTGTATACTTGAAAACTAAAAGTATGCATGTGAATTTGTTTA
GGAAAGTACTTTCACAAT----ATTTAATTCTTTCACTACTAAAAAATGGACTTTTGACCCCTC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr1A_691
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCTAATAGCGCGCTCTCCATGCATGTCCCATGCAAGC----A------TAAACAGCATATAAACATTACGAATCTTACGT
ACAGTGCAGTGCCACGTCTATCAAGAACGGATCCGGCATC-GTATCACATCGCATCCATTAACAATCTCCTCGGTCAGAC
GACGATCAGGTTAAGATCGTTGACAAT--GAGTGAAACACGTGTATGCGTGCAATTGCATGGCAAGAGCTGCCACATCGA
ATTGGACT---GTAACGAGAAGTTCAGAGCGCCTATATAAAGCGGGGAT--CATCACCTGTTTACTCCACA----GACAC
AAGCACACAA--------CCAGCCCTAGATCGACAAGAGAGGAAGT--AAAAAGGAAGAAGATGATGAGCACCAGGGCCC
TCGCTCTCGGCGTGTCTGTCGTCCTCGCCTTCACGGT---GACCACGCACGCCCAGAGGTGCGGCGAGCAGGGCAGCGGC
ATGGAGTGCCCCAACAACCTCTGCTGCAGCCAGTACGGCTACTGCGGCATGGGCGGCGACTACTGCGGCAACGGCTGCCA
GAACGGCGCCTGCTACACCAGCAAGCGCTGCGGCAGCCAGGCCGG------CGGCGCAGTGTGCCCCAACAACCACTGCT
GCAGCCAGTACGGGCACTGCGGGTTCGGCTCCGAGTACTGTGGCGCCGGCTGCCAGGGCGGCCCCTGCCACGCCGACATC
AAGTGCGGCAGCCAGGCCGGCGGCAAGCTATGCCCGAACAACCTCTGCTGCAGCCAGTGGGGTTACTGTGGCCTCGGCTC
CGAGTTCTGCGGCGTCGGCTGCCAGAACGGCGCTTGCAGCACCGACAAGCCGTGTGGCAAGAACGCCGGTGGCAGGGCTT
GCACAAACAACTATTGTTGTAGCCAGTGGGGATCCTGCGGTATTGGCCCGGCCTACTGCGGTGCAGGCTGCCAGAGCGGC
GGCTGTGGCGCTGTATTCGCCGAG---GCCATCGCCGCCAACTCCACCTCCACGCTTCTCAAAGAATGAT-------CTC
GCCATGGCAGTATTGCAACGACAAATAATCCGTGGTAGTCTCATTGCCACCTACGG-TTTCCCTTCGGTTACTTTTAGTA
GTA-CTAGTCCTTAATAATTCTCTAGCTTGCAATATGACATGCAGGTTACTGCAGCAGTAACAAAATATTGCTGCAGTAC
ATGCATGGAGATATTACAGTGAG-AAGTACTGTGTGGCAATGTAGGGTGTGCTATTGTTGCCACAAATTTAGTTTTTCTT
GTTACCTTCGGTTGTCAGG----ATGCATGCATCCCGGTTGTAATGTTGAAGTACTTCATGATTTCGTTGCAATACATTA
CCATGAGTCTCACATTATTACTCCCCTCGCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3B_912
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CAGAACGCCTATATAAAGAGAGGAGAGCACCACCCGTTTACT---CACACA-----
CACACCACAA--------CCAGTACTAGATCCACAAGCCAG------CTGAAAGGAAGAAGATGATGAGCAACAAGGCCC
TCACACTCGGCGCGGTCGTCGTCCTCGCCTTCGCCATGGCGGGCGCGCACGCCGAGCAGTGCGGCCACGCGGCCGACGGC
ATGGAGTGCCCCAACAACCTCTGCTGCAGCGCGTGGGGGTACTGCGGCATGGACGCCAACTACTGCGGCGATGGCTGCCA
GAGCGGCGCCTGCTACGAGCCCAAACGCTGCGGCGCCCAGGCCGGGGCGAACGCGGTGACGTGCCCCAACAACCACTGCT
GCAGCGGCGACGGGTTCTGCGGCTACGGCCAGGAGTACTGCGGCGCCGGCTGCCAGAACGGGCCCTGCCGCGCCAACATC
AAGTGCAGCGC---------CGACAAGCCGTGCCTGAGCAACTTCTGCTGCAGCCAGTACGGATACTGCGGGCTCGGCGT
CGAGTTCTGCGGCCAGGGCTGCCAGAGCGGCGCCTGC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3D_953
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CACACACACA---
---CACACAA--------CCAGTACTAGATCCACAAGCCAG------CAGAAAGGAAGAAGATGATGAGCACCAAGGCCC
TCACACTCGGCGCGGCCGTCGTCCTCGCCATCGCCGTGGCGGGCGCGCACGCCGAGCAGTGCGGCCACGCGGCCGACGGC
ATGGAGTGCCCCAACAACCTCTGCTGCAGCGCGTGGGGGTACTGCGGCATGGACGCCAACTACTGCGGCGACGGCTGCCA
GAGCGGCGCCTGCTACGAGCCCAAACGCTGCGGCGCCCAGGCCGGGGGCAACGCCGTGACGTGCCCCAACAACCACTGCT
GCAGCGGCCACGGGTTCTGCGGCTACGGCCAGGAGTACTGCGGCGCCGGCTGCCAGAACGGGCCTTGCCGCGCCAACATC
AAGTGCAGCGC---------CGACAAGCCGTGCCTGAGCAACTTCTGCTGCAGCCAGTACGGATACTGCGGGCTCGGCGT
CGAGTTCTGCGGCCAGGGCTGCCAGAGCGGCGCCTGC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSS----------S----S---------S---------------------------
----------SSSS------------------------------------------S-----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SS--------------------
--------------------------------------------------------------SSS----S----------
---------S---------S---------------------------------------------------S--------
-SS------------------------------------S-----S-S----------------S---------------
---------S--S--------------S-S--S-----------------S----------S-----------S---S--
---S---------S-------S--------------SSSSSSSSSSS---------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------------S------------------------
---------------S-------------------------------------------------S--------------
--------SSS---------------------------------------------------------------------
----------SSSSSSSS------------------------------------S-------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
----------------------------------------------------------------S----------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------S-S---
-------------------------------------S------------------------------------------
--------------------------------------SS-----------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----SS------SS---------------------------------SS---------------------S--------
--------------------------------------------------------------------------------
-------------------S--S-S-------------S--S------------S-S----------S-SS---------
SS------S---------------S--S--------S------S---SS--S------SS----SS-SSS-SS-SS-S-S
SSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---S--S------S-SSSSSSSS--S-S--SSSS-SSSSSSS---SSSSS-SSSSSSSSSS--S-SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1052
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CCACACAC
ACACACACAAGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_2767
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------CCGCGTTAACACCTTCCTCT--------------
----------------------------------------------------
