Multiple sequence alignment - TraesCS1A01G323700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G323700 chr1A 100.000 3260 0 0 1 3260 514539771 514536512 0.000000e+00 6021.0
1 TraesCS1A01G323700 chr1D 91.063 2003 123 31 50 2041 417368508 417366551 0.000000e+00 2656.0
2 TraesCS1A01G323700 chr1D 90.731 971 53 20 2324 3260 417366272 417365305 0.000000e+00 1260.0
3 TraesCS1A01G323700 chr1D 91.071 224 19 1 2079 2302 417366554 417366332 5.290000e-78 302.0
4 TraesCS1A01G323700 chr1D 100.000 29 0 0 126 154 93112112 93112140 2.000000e-03 54.7
5 TraesCS1A01G323700 chr1B 91.257 1384 97 10 26 1397 563998625 563997254 0.000000e+00 1864.0
6 TraesCS1A01G323700 chr1B 91.848 736 32 14 2324 3032 563996383 563995649 0.000000e+00 1002.0
7 TraesCS1A01G323700 chr1B 94.396 571 25 5 1473 2041 563997227 563996662 0.000000e+00 870.0
8 TraesCS1A01G323700 chr1B 91.071 224 19 1 2079 2302 563996665 563996443 5.290000e-78 302.0
9 TraesCS1A01G323700 chr4A 85.417 96 13 1 3115 3209 595815968 595816063 7.440000e-17 99.0
10 TraesCS1A01G323700 chr3D 89.474 57 6 0 15 71 610026479 610026423 4.510000e-09 73.1
11 TraesCS1A01G323700 chr3B 83.333 78 9 3 78 153 528426284 528426209 5.840000e-08 69.4
12 TraesCS1A01G323700 chr6A 80.682 88 11 3 78 159 36395106 36395019 2.720000e-06 63.9
13 TraesCS1A01G323700 chr3A 91.304 46 2 1 116 161 57496547 57496590 9.770000e-06 62.1
14 TraesCS1A01G323700 chr2D 91.304 46 2 2 116 161 154177250 154177207 9.770000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G323700 chr1A 514536512 514539771 3259 True 6021.0 6021 100.000 1 3260 1 chr1A.!!$R1 3259
1 TraesCS1A01G323700 chr1D 417365305 417368508 3203 True 1406.0 2656 90.955 50 3260 3 chr1D.!!$R1 3210
2 TraesCS1A01G323700 chr1B 563995649 563998625 2976 True 1009.5 1864 92.143 26 3032 4 chr1B.!!$R1 3006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 659 0.247736 CCCTCCTCTTCCAAGTCACG 59.752 60.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 2300 0.104304 CGATAAGAAGACCGGGTGGG 59.896 60.0 3.3 0.0 40.75 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.982213 CGACAATGAGGCACATGTG 57.018 52.632 21.83 21.83 39.39 3.21
19 20 0.448990 CGACAATGAGGCACATGTGG 59.551 55.000 26.55 10.84 39.39 4.17
20 21 1.538047 GACAATGAGGCACATGTGGT 58.462 50.000 26.55 13.98 39.39 4.16
47 48 6.208599 ACTTCGTCAATCCCAAAATATTGTGT 59.791 34.615 4.91 0.00 35.16 3.72
53 54 3.426615 TCCCAAAATATTGTGTCGGCTT 58.573 40.909 4.91 0.00 34.60 4.35
65 66 4.207955 TGTGTCGGCTTAGTATCTCAGAT 58.792 43.478 0.00 0.00 0.00 2.90
78 79 7.163001 AGTATCTCAGATGCGCTCATATTTA 57.837 36.000 9.73 0.00 31.96 1.40
89 90 2.813754 GCTCATATTTATGCCGGCTCAA 59.186 45.455 29.70 18.35 33.76 3.02
96 97 3.483808 TTATGCCGGCTCAATATGTCA 57.516 42.857 29.70 2.45 0.00 3.58
102 103 2.158900 CCGGCTCAATATGTCAGAGGTT 60.159 50.000 0.00 0.00 0.00 3.50
134 135 2.979240 TGTGTGCATGCGTTTATAGGA 58.021 42.857 14.09 0.00 0.00 2.94
154 155 3.364023 GGAATGAGTGTATGCGCGTATAC 59.636 47.826 32.19 32.19 34.78 1.47
163 164 1.864565 TGCGCGTATACATGAGCATT 58.135 45.000 8.43 0.00 40.93 3.56
164 165 3.019933 TGCGCGTATACATGAGCATTA 57.980 42.857 8.43 0.00 40.93 1.90
206 208 8.896320 TGTATAAATAATCTAACCGCACATGT 57.104 30.769 0.00 0.00 0.00 3.21
289 291 2.084546 CCATCTGGAACGGGAAAGAAC 58.915 52.381 0.00 0.00 37.39 3.01
432 436 3.458163 CCCGAACCAGCTCCGCTA 61.458 66.667 0.00 0.00 36.40 4.26
436 440 1.437986 GAACCAGCTCCGCTATCGT 59.562 57.895 0.00 0.00 36.40 3.73
508 512 3.316308 GCAAAGAAGAGAGAACAAAGCCA 59.684 43.478 0.00 0.00 0.00 4.75
595 599 1.408822 CGGAGGAAAAGAGGATTGGGG 60.409 57.143 0.00 0.00 0.00 4.96
642 646 1.813102 GGGATCACAGATTCCCTCCT 58.187 55.000 0.63 0.00 46.91 3.69
654 658 1.645710 TCCCTCCTCTTCCAAGTCAC 58.354 55.000 0.00 0.00 0.00 3.67
655 659 0.247736 CCCTCCTCTTCCAAGTCACG 59.752 60.000 0.00 0.00 0.00 4.35
656 660 0.969894 CCTCCTCTTCCAAGTCACGT 59.030 55.000 0.00 0.00 0.00 4.49
657 661 1.067495 CCTCCTCTTCCAAGTCACGTC 60.067 57.143 0.00 0.00 0.00 4.34
734 739 2.956333 GGTGATATGCTTTGGTTACCCC 59.044 50.000 0.00 0.00 0.00 4.95
836 847 3.450817 CCTCCTCTTCTTCTTCTCCCTTC 59.549 52.174 0.00 0.00 0.00 3.46
950 965 1.273327 CAACATTGCCTCCTTGGGTTC 59.727 52.381 0.00 0.00 36.00 3.62
957 974 1.303643 CTCCTTGGGTTCTGGTGGC 60.304 63.158 0.00 0.00 0.00 5.01
970 987 1.079057 GGTGGCGAGGAGGAGAAAC 60.079 63.158 0.00 0.00 0.00 2.78
1041 1058 3.849951 CTAGGGGCATCGGCGTGT 61.850 66.667 6.85 0.00 42.47 4.49
1069 1086 1.745489 GTGGTGGCCGTCATCTTCC 60.745 63.158 0.00 0.00 0.00 3.46
1078 1095 1.340658 CGTCATCTTCCTCGTGTGTG 58.659 55.000 0.00 0.00 0.00 3.82
1089 1106 0.107410 TCGTGTGTGTTGCCCTTCTT 60.107 50.000 0.00 0.00 0.00 2.52
1125 1142 4.664677 ACGAGTGGTGCTGGCGTC 62.665 66.667 0.00 0.00 0.00 5.19
1142 1159 4.069232 CGGCTTCGGTCCAGCTCA 62.069 66.667 1.50 0.00 37.43 4.26
1144 1161 2.035442 GGCTTCGGTCCAGCTCAAC 61.035 63.158 1.50 0.00 37.43 3.18
1147 1164 3.234630 TTCGGTCCAGCTCAACCCG 62.235 63.158 8.18 6.41 39.98 5.28
1149 1166 3.637273 GGTCCAGCTCAACCCGGT 61.637 66.667 0.00 0.00 0.00 5.28
1160 1177 2.883828 AACCCGGTGGCAGAGTGAG 61.884 63.158 0.00 0.00 33.59 3.51
1161 1178 3.314331 CCCGGTGGCAGAGTGAGT 61.314 66.667 0.00 0.00 0.00 3.41
1163 1180 1.215647 CCGGTGGCAGAGTGAGTAC 59.784 63.158 0.00 0.00 0.00 2.73
1166 1183 0.601558 GGTGGCAGAGTGAGTACGAA 59.398 55.000 0.00 0.00 0.00 3.85
1178 1195 2.050934 GTACGAAGAGCTCCCCGGT 61.051 63.158 23.43 14.03 0.00 5.28
1179 1196 2.050350 TACGAAGAGCTCCCCGGTG 61.050 63.158 23.43 7.22 0.00 4.94
1251 1268 2.204448 AGGATTCCCAAGGGGCCA 60.204 61.111 4.39 0.00 43.94 5.36
1274 1291 4.788617 AGACCCTATCCACAACAGGTAAAT 59.211 41.667 0.00 0.00 0.00 1.40
1281 1298 8.531146 CCTATCCACAACAGGTAAATTTTGATT 58.469 33.333 0.00 0.00 0.00 2.57
1283 1300 7.353414 TCCACAACAGGTAAATTTTGATTGA 57.647 32.000 0.00 0.00 0.00 2.57
1287 1304 9.258826 CACAACAGGTAAATTTTGATTGATTCA 57.741 29.630 0.00 0.00 0.00 2.57
1303 1320 7.383843 TGATTGATTCATGTTTGATGCATATGC 59.616 33.333 21.09 21.09 42.50 3.14
1320 1337 5.791589 CATATGCATGCACATGTTGTTTTC 58.208 37.500 27.16 0.00 40.80 2.29
1324 1341 3.184986 GCATGCACATGTTGTTTTCCTTC 59.815 43.478 14.21 0.00 40.80 3.46
1352 1370 1.759445 GCATTCTGCCTCTCTACCTGA 59.241 52.381 0.00 0.00 37.42 3.86
1354 1372 3.369892 GCATTCTGCCTCTCTACCTGAAA 60.370 47.826 0.00 0.00 37.42 2.69
1356 1374 5.453903 GCATTCTGCCTCTCTACCTGAAATA 60.454 44.000 0.00 0.00 37.42 1.40
1358 1376 6.412362 TTCTGCCTCTCTACCTGAAATATC 57.588 41.667 0.00 0.00 0.00 1.63
1359 1377 5.710646 TCTGCCTCTCTACCTGAAATATCT 58.289 41.667 0.00 0.00 0.00 1.98
1360 1378 5.772672 TCTGCCTCTCTACCTGAAATATCTC 59.227 44.000 0.00 0.00 0.00 2.75
1410 1429 4.730949 AGCACATTCATCAAGAAATGGG 57.269 40.909 0.00 0.00 40.22 4.00
1416 1435 7.521748 GCACATTCATCAAGAAATGGGAGATAG 60.522 40.741 1.69 0.00 40.22 2.08
1430 1449 5.508567 TGGGAGATAGTTTTGCATCATCAA 58.491 37.500 0.00 0.00 0.00 2.57
1465 1484 9.031537 TGTTTATGACTCTTAACTAGTGGATCA 57.968 33.333 0.00 0.00 0.00 2.92
1471 1490 9.219603 TGACTCTTAACTAGTGGATCAAAATTG 57.780 33.333 0.00 0.00 0.00 2.32
1538 1557 5.480422 TCCTTGATACTCTGCTCTGTTGTTA 59.520 40.000 0.00 0.00 0.00 2.41
1545 1564 9.151471 GATACTCTGCTCTGTTGTTATTTACAA 57.849 33.333 0.00 0.00 44.31 2.41
1560 1579 9.278978 TGTTATTTACAATTACAAGCACTCTGA 57.721 29.630 0.00 0.00 32.64 3.27
1598 1617 1.000827 ACAGACTCTGCTCAGTTGTCG 60.001 52.381 5.92 12.76 37.71 4.35
1623 1642 1.334556 TGCTGTCATGCAGTGAACAAC 59.665 47.619 15.48 0.00 46.64 3.32
1656 1675 9.434420 AAGTCTAGAGATGATTTGAAAGTTCTG 57.566 33.333 0.00 0.00 0.00 3.02
1706 1725 8.677148 TTAAACACAGTTCTTATGCTTCTTCT 57.323 30.769 0.00 0.00 0.00 2.85
1707 1726 6.793492 AACACAGTTCTTATGCTTCTTCTC 57.207 37.500 0.00 0.00 0.00 2.87
1708 1727 5.241662 ACACAGTTCTTATGCTTCTTCTCC 58.758 41.667 0.00 0.00 0.00 3.71
1709 1728 4.633565 CACAGTTCTTATGCTTCTTCTCCC 59.366 45.833 0.00 0.00 0.00 4.30
1710 1729 3.868077 CAGTTCTTATGCTTCTTCTCCCG 59.132 47.826 0.00 0.00 0.00 5.14
1711 1730 3.118592 AGTTCTTATGCTTCTTCTCCCGG 60.119 47.826 0.00 0.00 0.00 5.73
1712 1731 2.467880 TCTTATGCTTCTTCTCCCGGT 58.532 47.619 0.00 0.00 0.00 5.28
1713 1732 2.168521 TCTTATGCTTCTTCTCCCGGTG 59.831 50.000 0.00 0.00 0.00 4.94
1746 1766 8.294341 CAGAAATCTGTAGTTCTTGTTTACGA 57.706 34.615 2.18 0.00 37.93 3.43
1769 1789 8.397906 ACGATAAAAATATGTCTGTGTGGATTG 58.602 33.333 0.00 0.00 0.00 2.67
1920 1940 1.202687 TGACAAGAAGAGTGCCAGTGG 60.203 52.381 4.20 4.20 0.00 4.00
2001 2021 5.300286 CCTGCTTTTGATGATTTACCTAGGG 59.700 44.000 14.81 0.00 0.00 3.53
2018 2038 4.884164 CCTAGGGAAACTAAAATCAGGCAG 59.116 45.833 0.00 0.00 0.00 4.85
2037 2057 1.133976 AGCACACCTAGATGATTGGGC 60.134 52.381 0.00 0.00 38.75 5.36
2038 2058 1.408683 GCACACCTAGATGATTGGGCA 60.409 52.381 0.00 0.00 38.32 5.36
2039 2059 2.945440 GCACACCTAGATGATTGGGCAA 60.945 50.000 0.00 0.00 38.32 4.52
2040 2060 3.559069 CACACCTAGATGATTGGGCAAT 58.441 45.455 0.00 0.00 0.00 3.56
2041 2061 3.317149 CACACCTAGATGATTGGGCAATG 59.683 47.826 0.00 0.00 0.00 2.82
2042 2062 3.053395 ACACCTAGATGATTGGGCAATGT 60.053 43.478 0.00 0.00 0.00 2.71
2043 2063 3.317149 CACCTAGATGATTGGGCAATGTG 59.683 47.826 0.00 0.00 0.00 3.21
2044 2064 2.889045 CCTAGATGATTGGGCAATGTGG 59.111 50.000 0.00 0.00 0.00 4.17
2045 2065 2.537633 AGATGATTGGGCAATGTGGT 57.462 45.000 0.00 0.00 0.00 4.16
2046 2066 2.823959 AGATGATTGGGCAATGTGGTT 58.176 42.857 0.00 0.00 0.00 3.67
2047 2067 3.175594 AGATGATTGGGCAATGTGGTTT 58.824 40.909 0.00 0.00 0.00 3.27
2048 2068 2.835580 TGATTGGGCAATGTGGTTTG 57.164 45.000 0.00 0.00 0.00 2.93
2059 2079 5.579384 CAATGTGGTTTGCACAAATGTAG 57.421 39.130 0.00 0.00 36.06 2.74
2060 2080 3.090952 TGTGGTTTGCACAAATGTAGC 57.909 42.857 0.00 0.00 32.36 3.58
2061 2081 2.223923 TGTGGTTTGCACAAATGTAGCC 60.224 45.455 0.00 0.00 32.36 3.93
2062 2082 2.035832 GTGGTTTGCACAAATGTAGCCT 59.964 45.455 0.00 0.00 32.36 4.58
2063 2083 2.295909 TGGTTTGCACAAATGTAGCCTC 59.704 45.455 0.00 0.00 32.36 4.70
2064 2084 2.295909 GGTTTGCACAAATGTAGCCTCA 59.704 45.455 0.00 0.00 32.36 3.86
2065 2085 3.056607 GGTTTGCACAAATGTAGCCTCAT 60.057 43.478 0.00 0.00 32.36 2.90
2066 2086 4.168760 GTTTGCACAAATGTAGCCTCATC 58.831 43.478 0.00 0.00 32.36 2.92
2067 2087 3.070476 TGCACAAATGTAGCCTCATCA 57.930 42.857 0.00 0.00 0.00 3.07
2068 2088 3.011818 TGCACAAATGTAGCCTCATCAG 58.988 45.455 0.00 0.00 0.00 2.90
2069 2089 3.273434 GCACAAATGTAGCCTCATCAGA 58.727 45.455 0.00 0.00 0.00 3.27
2070 2090 3.691118 GCACAAATGTAGCCTCATCAGAA 59.309 43.478 0.00 0.00 0.00 3.02
2071 2091 4.156556 GCACAAATGTAGCCTCATCAGAAA 59.843 41.667 0.00 0.00 0.00 2.52
2072 2092 5.335897 GCACAAATGTAGCCTCATCAGAAAA 60.336 40.000 0.00 0.00 0.00 2.29
2073 2093 6.626623 GCACAAATGTAGCCTCATCAGAAAAT 60.627 38.462 0.00 0.00 0.00 1.82
2074 2094 7.415541 GCACAAATGTAGCCTCATCAGAAAATA 60.416 37.037 0.00 0.00 0.00 1.40
2075 2095 8.461222 CACAAATGTAGCCTCATCAGAAAATAA 58.539 33.333 0.00 0.00 0.00 1.40
2076 2096 8.462016 ACAAATGTAGCCTCATCAGAAAATAAC 58.538 33.333 0.00 0.00 0.00 1.89
2077 2097 8.680903 CAAATGTAGCCTCATCAGAAAATAACT 58.319 33.333 0.00 0.00 0.00 2.24
2078 2098 7.798596 ATGTAGCCTCATCAGAAAATAACTG 57.201 36.000 0.00 0.00 36.80 3.16
2120 2140 3.133542 CAGATAACTGCATGAGAGGGACA 59.866 47.826 0.00 0.00 37.33 4.02
2127 2147 2.158856 TGCATGAGAGGGACATAAGCTG 60.159 50.000 0.00 0.00 0.00 4.24
2132 2152 5.086104 TGAGAGGGACATAAGCTGTAAAC 57.914 43.478 0.00 0.00 38.54 2.01
2139 2159 7.228590 AGGGACATAAGCTGTAAACTAAACAA 58.771 34.615 0.00 0.00 38.54 2.83
2142 2162 9.908152 GGACATAAGCTGTAAACTAAACAAAAT 57.092 29.630 0.00 0.00 38.54 1.82
2165 2185 4.667519 AAGTAGCCCACTAACTAATCGG 57.332 45.455 0.00 0.00 36.04 4.18
2168 2188 1.768870 AGCCCACTAACTAATCGGCAT 59.231 47.619 0.00 0.00 38.90 4.40
2175 2195 5.352284 CACTAACTAATCGGCATCTTCTGT 58.648 41.667 0.00 0.00 0.00 3.41
2193 2213 0.827368 GTTTTGGTTGCCACCTCCAA 59.173 50.000 8.65 0.21 44.61 3.53
2238 2258 2.267961 GCCGGGAAGACCACGATT 59.732 61.111 2.18 0.00 40.22 3.34
2260 2280 1.749638 CCACGCCGGAGAGACTAGT 60.750 63.158 13.83 0.00 36.56 2.57
2281 2301 2.202756 GGCGAGATGACGACCACC 60.203 66.667 0.00 0.00 35.00 4.61
2284 2304 1.153823 CGAGATGACGACCACCCAC 60.154 63.158 0.00 0.00 35.09 4.61
2302 2322 0.974010 ACCCGGTCTTCTTATCGGCA 60.974 55.000 0.00 0.00 41.02 5.69
2303 2323 0.177141 CCCGGTCTTCTTATCGGCAA 59.823 55.000 0.00 0.00 41.02 4.52
2304 2324 1.406341 CCCGGTCTTCTTATCGGCAAA 60.406 52.381 0.00 0.00 41.02 3.68
2307 2340 2.936498 CGGTCTTCTTATCGGCAAATGT 59.064 45.455 0.00 0.00 0.00 2.71
2322 2355 2.748058 AATGTTGCGACGGGGAAGCT 62.748 55.000 0.00 0.00 0.00 3.74
2499 2557 1.001860 CCGTGGTGATTTTGCCCAAAT 59.998 47.619 0.00 0.00 37.84 2.32
2508 2568 6.200808 GTGATTTTGCCCAAATTTGTTTCTG 58.799 36.000 16.73 1.25 35.02 3.02
2553 2615 2.474359 GCATGTACGCAGATAAGCAGAG 59.526 50.000 0.00 0.00 0.00 3.35
2579 2641 1.912371 GCTGCGCCAGTAAGTGAACC 61.912 60.000 4.18 0.00 33.43 3.62
2593 2655 1.002430 GTGAACCCACTGATGAGCTCA 59.998 52.381 20.79 20.79 40.10 4.26
2604 2666 4.021280 ACTGATGAGCTCACTATATGCCAG 60.021 45.833 20.97 16.36 0.00 4.85
2624 2686 5.588648 GCCAGTAGCACCTATGTAAATCAAA 59.411 40.000 0.00 0.00 42.97 2.69
2643 2705 9.733219 AAATCAAATTTTGTGGTTTGCAATAAG 57.267 25.926 0.00 0.00 35.76 1.73
2645 2707 8.140677 TCAAATTTTGTGGTTTGCAATAAGAG 57.859 30.769 0.00 0.00 35.76 2.85
2649 2711 2.961741 TGTGGTTTGCAATAAGAGCCAA 59.038 40.909 0.00 0.00 0.00 4.52
2657 2719 4.497300 TGCAATAAGAGCCAAAGATTTGC 58.503 39.130 0.00 0.00 38.85 3.68
2662 2724 1.815003 AGAGCCAAAGATTTGCCGAAG 59.185 47.619 0.00 0.00 36.86 3.79
2681 2743 4.675114 CGAAGGGCGTATTTTATGATTTGC 59.325 41.667 0.00 0.00 34.64 3.68
2684 2746 3.972502 GGGCGTATTTTATGATTTGCGTC 59.027 43.478 0.00 0.00 0.00 5.19
2690 2775 3.755965 TTTATGATTTGCGTCGCATGT 57.244 38.095 22.41 12.70 38.76 3.21
2754 2839 2.440409 GCCTGGAAAGCATGAGAGAAA 58.560 47.619 0.00 0.00 0.00 2.52
2762 2847 8.442632 TGGAAAGCATGAGAGAAATATAACAG 57.557 34.615 0.00 0.00 0.00 3.16
2780 2865 1.134729 CAGGAGAGGCAGAGAAAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
2905 2990 1.562783 ACCGAGGAGGGAAAGAAGAG 58.437 55.000 0.00 0.00 46.96 2.85
2961 3046 0.169672 CACGTCGTATCGGGTTCAGT 59.830 55.000 0.00 0.00 34.94 3.41
2963 3048 0.448990 CGTCGTATCGGGTTCAGTCA 59.551 55.000 0.00 0.00 0.00 3.41
2969 3054 4.628333 TCGTATCGGGTTCAGTCATTTTTC 59.372 41.667 0.00 0.00 0.00 2.29
2989 3079 4.184439 TTTTTGAGGGGAACGGGC 57.816 55.556 0.00 0.00 0.00 6.13
3041 3133 4.584029 AACAGCTCGAATACGACAAATG 57.416 40.909 0.00 0.00 43.81 2.32
3092 3184 4.082300 TGCAAACATATCACAAATTCGCCT 60.082 37.500 0.00 0.00 0.00 5.52
3101 3193 4.130857 TCACAAATTCGCCTGTACAAAGA 58.869 39.130 0.00 0.00 0.00 2.52
3132 3233 1.013596 CACTCTCAAACCACACGCAA 58.986 50.000 0.00 0.00 0.00 4.85
3174 3275 2.480416 GGACGTGTTTTGCCATTCAACA 60.480 45.455 0.00 0.00 33.73 3.33
3183 3284 0.889186 GCCATTCAACACGGTCCAGT 60.889 55.000 0.00 0.00 0.00 4.00
3193 3294 2.504519 GGTCCAGTATCGGCCCAC 59.495 66.667 0.00 0.00 0.00 4.61
3217 3318 1.500396 GTCCGGACGCACATTTTCC 59.500 57.895 20.85 0.00 0.00 3.13
3224 3325 0.316841 ACGCACATTTTCCCGCAAAT 59.683 45.000 0.00 0.00 0.00 2.32
3230 3331 2.288763 ACATTTTCCCGCAAATCGCTTT 60.289 40.909 0.00 0.00 39.08 3.51
3233 3334 0.038709 TTCCCGCAAATCGCTTTTGG 60.039 50.000 11.14 3.59 44.10 3.28
3234 3335 1.175983 TCCCGCAAATCGCTTTTGGT 61.176 50.000 11.14 0.00 44.10 3.67
3245 3346 1.541310 GCTTTTGGTTACCCTGGCCC 61.541 60.000 0.00 0.00 0.00 5.80
3246 3347 0.178947 CTTTTGGTTACCCTGGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
3247 3348 0.470268 TTTTGGTTACCCTGGCCCAC 60.470 55.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.448990 CCACATGTGCCTCATTGTCG 59.551 55.000 20.81 0.00 34.09 4.35
1 2 1.200716 CACCACATGTGCCTCATTGTC 59.799 52.381 20.81 0.00 38.34 3.18
2 3 1.202915 TCACCACATGTGCCTCATTGT 60.203 47.619 20.81 8.03 45.03 2.71
3 4 1.200716 GTCACCACATGTGCCTCATTG 59.799 52.381 20.81 7.36 45.03 2.82
4 5 1.074405 AGTCACCACATGTGCCTCATT 59.926 47.619 20.81 0.97 45.03 2.57
5 6 0.694771 AGTCACCACATGTGCCTCAT 59.305 50.000 20.81 2.88 45.03 2.90
6 7 0.473755 AAGTCACCACATGTGCCTCA 59.526 50.000 20.81 0.63 45.03 3.86
7 8 1.160137 GAAGTCACCACATGTGCCTC 58.840 55.000 20.81 9.86 45.03 4.70
8 9 0.603707 CGAAGTCACCACATGTGCCT 60.604 55.000 20.81 9.66 45.03 4.75
9 10 0.884704 ACGAAGTCACCACATGTGCC 60.885 55.000 20.81 7.53 45.03 5.01
10 11 2.616969 ACGAAGTCACCACATGTGC 58.383 52.632 20.81 6.70 45.03 4.57
22 23 6.208599 ACACAATATTTTGGGATTGACGAAGT 59.791 34.615 5.06 0.00 41.15 3.01
23 24 6.620678 ACACAATATTTTGGGATTGACGAAG 58.379 36.000 5.06 0.00 38.63 3.79
24 25 6.582677 ACACAATATTTTGGGATTGACGAA 57.417 33.333 5.06 0.00 38.63 3.85
47 48 2.226674 CGCATCTGAGATACTAAGCCGA 59.773 50.000 0.00 0.00 0.00 5.54
53 54 6.765915 AATATGAGCGCATCTGAGATACTA 57.234 37.500 11.47 0.00 35.94 1.82
65 66 1.155889 CCGGCATAAATATGAGCGCA 58.844 50.000 11.47 0.00 35.75 6.09
78 79 1.417517 TCTGACATATTGAGCCGGCAT 59.582 47.619 31.54 16.54 0.00 4.40
96 97 6.098838 TGCACACATATTCTATGAGAACCTCT 59.901 38.462 1.33 0.00 37.00 3.69
102 103 4.687483 CGCATGCACACATATTCTATGAGA 59.313 41.667 19.57 0.00 33.67 3.27
134 135 3.972403 TGTATACGCGCATACACTCATT 58.028 40.909 24.66 0.00 36.66 2.57
182 183 8.227791 CCACATGTGCGGTTAGATTATTTATAC 58.772 37.037 20.81 0.00 0.00 1.47
205 207 0.603975 GCCCAGACTGTTCTCACCAC 60.604 60.000 0.93 0.00 0.00 4.16
206 208 1.754745 GCCCAGACTGTTCTCACCA 59.245 57.895 0.93 0.00 0.00 4.17
267 269 1.278127 TCTTTCCCGTTCCAGATGGAC 59.722 52.381 0.00 0.00 45.39 4.02
268 270 1.651737 TCTTTCCCGTTCCAGATGGA 58.348 50.000 0.00 0.00 43.73 3.41
269 271 2.084546 GTTCTTTCCCGTTCCAGATGG 58.915 52.381 0.00 0.00 0.00 3.51
270 272 1.732259 CGTTCTTTCCCGTTCCAGATG 59.268 52.381 0.00 0.00 0.00 2.90
289 291 3.000277 GTCGCTTCATCTGATTCTGTTCG 60.000 47.826 0.00 0.00 0.00 3.95
508 512 2.838736 TGCTTTCTCTTGCTTCTTCGT 58.161 42.857 0.00 0.00 0.00 3.85
587 591 0.938192 TTATCCCCCAACCCCAATCC 59.062 55.000 0.00 0.00 0.00 3.01
595 599 3.118775 GCCAAACATTCTTATCCCCCAAC 60.119 47.826 0.00 0.00 0.00 3.77
642 646 1.608055 TACGGACGTGACTTGGAAGA 58.392 50.000 7.73 0.00 0.00 2.87
654 658 0.167251 AATGCGCCTTTTTACGGACG 59.833 50.000 4.18 0.00 30.65 4.79
655 659 2.247637 GAAATGCGCCTTTTTACGGAC 58.752 47.619 12.02 0.00 30.65 4.79
656 660 1.135916 CGAAATGCGCCTTTTTACGGA 60.136 47.619 12.02 0.00 0.00 4.69
657 661 1.255767 CGAAATGCGCCTTTTTACGG 58.744 50.000 12.02 0.00 0.00 4.02
734 739 7.506938 AGATCAAATATGGTGTTATGGAAAGGG 59.493 37.037 0.00 0.00 0.00 3.95
813 824 2.657459 AGGGAGAAGAAGAAGAGGAGGA 59.343 50.000 0.00 0.00 0.00 3.71
814 825 3.114643 AGGGAGAAGAAGAAGAGGAGG 57.885 52.381 0.00 0.00 0.00 4.30
815 826 3.130340 CGAAGGGAGAAGAAGAAGAGGAG 59.870 52.174 0.00 0.00 0.00 3.69
836 847 1.066858 TGGGAGCAGTAGAGAAAAGCG 60.067 52.381 0.00 0.00 0.00 4.68
950 965 1.544825 TTTCTCCTCCTCGCCACCAG 61.545 60.000 0.00 0.00 0.00 4.00
957 974 3.843999 CTTCTGAAGTTTCTCCTCCTCG 58.156 50.000 9.26 0.00 0.00 4.63
970 987 0.107752 GCCCTCCTCTGCTTCTGAAG 60.108 60.000 13.02 13.02 0.00 3.02
1041 1058 3.286751 GCCACCACTCGCTTGCAA 61.287 61.111 0.00 0.00 0.00 4.08
1045 1062 4.681978 GACGGCCACCACTCGCTT 62.682 66.667 2.24 0.00 0.00 4.68
1069 1086 0.532862 AGAAGGGCAACACACACGAG 60.533 55.000 0.00 0.00 39.74 4.18
1078 1095 1.270550 CATCACCACAAGAAGGGCAAC 59.729 52.381 0.00 0.00 0.00 4.17
1089 1106 2.031919 GTCGCCACCATCACCACA 59.968 61.111 0.00 0.00 0.00 4.17
1125 1142 3.589654 TTGAGCTGGACCGAAGCCG 62.590 63.158 0.00 0.00 41.82 5.52
1126 1143 2.035442 GTTGAGCTGGACCGAAGCC 61.035 63.158 0.00 0.00 41.82 4.35
1131 1148 4.760047 CCGGGTTGAGCTGGACCG 62.760 72.222 1.79 0.00 43.89 4.79
1134 1151 3.636231 CCACCGGGTTGAGCTGGA 61.636 66.667 14.60 0.00 0.00 3.86
1137 1154 4.335647 CTGCCACCGGGTTGAGCT 62.336 66.667 6.32 0.00 36.17 4.09
1142 1159 2.847234 TCACTCTGCCACCGGGTT 60.847 61.111 6.32 0.00 36.17 4.11
1144 1161 1.982395 TACTCACTCTGCCACCGGG 60.982 63.158 6.32 0.00 37.18 5.73
1147 1164 0.601558 TTCGTACTCACTCTGCCACC 59.398 55.000 0.00 0.00 0.00 4.61
1149 1166 1.813178 CTCTTCGTACTCACTCTGCCA 59.187 52.381 0.00 0.00 0.00 4.92
1160 1177 2.050934 ACCGGGGAGCTCTTCGTAC 61.051 63.158 14.64 0.00 0.00 3.67
1161 1178 2.050350 CACCGGGGAGCTCTTCGTA 61.050 63.158 14.64 0.00 0.00 3.43
1163 1180 4.821589 GCACCGGGGAGCTCTTCG 62.822 72.222 8.67 16.57 0.00 3.79
1166 1183 4.704103 TCTGCACCGGGGAGCTCT 62.704 66.667 8.67 0.00 34.45 4.09
1251 1268 2.344093 ACCTGTTGTGGATAGGGTCT 57.656 50.000 0.00 0.00 40.76 3.85
1274 1291 7.964604 TGCATCAAACATGAATCAATCAAAA 57.035 28.000 0.00 0.00 42.54 2.44
1303 1320 3.426191 CGAAGGAAAACAACATGTGCATG 59.574 43.478 10.31 10.31 44.15 4.06
1310 1327 1.680735 TGCTGCGAAGGAAAACAACAT 59.319 42.857 0.00 0.00 0.00 2.71
1343 1361 8.887717 CAAAAACAGGAGATATTTCAGGTAGAG 58.112 37.037 0.00 0.00 0.00 2.43
1352 1370 7.066307 ACTTTGCCAAAAACAGGAGATATTT 57.934 32.000 0.00 0.00 0.00 1.40
1354 1372 6.670695 AACTTTGCCAAAAACAGGAGATAT 57.329 33.333 0.00 0.00 0.00 1.63
1356 1374 5.357742 AAACTTTGCCAAAAACAGGAGAT 57.642 34.783 0.00 0.00 0.00 2.75
1358 1376 8.831715 ATTATAAACTTTGCCAAAAACAGGAG 57.168 30.769 0.00 0.00 0.00 3.69
1359 1377 9.620259 AAATTATAAACTTTGCCAAAAACAGGA 57.380 25.926 0.00 0.00 0.00 3.86
1397 1416 6.976925 GCAAAACTATCTCCCATTTCTTGATG 59.023 38.462 0.00 0.00 0.00 3.07
1410 1429 9.577110 TCAATTTTGATGATGCAAAACTATCTC 57.423 29.630 0.00 0.00 46.74 2.75
1416 1435 9.453325 AACATTTCAATTTTGATGATGCAAAAC 57.547 25.926 0.00 0.00 46.74 2.43
1440 1459 9.871238 TTGATCCACTAGTTAAGAGTCATAAAC 57.129 33.333 0.00 0.00 0.00 2.01
1463 1482 6.859420 TTCAGTTCAGTCGATCAATTTTGA 57.141 33.333 0.00 0.00 42.14 2.69
1464 1483 9.611284 TTTATTCAGTTCAGTCGATCAATTTTG 57.389 29.630 0.00 0.00 0.00 2.44
1469 1488 7.602265 TGTCATTTATTCAGTTCAGTCGATCAA 59.398 33.333 0.00 0.00 0.00 2.57
1471 1490 7.394872 GTGTCATTTATTCAGTTCAGTCGATC 58.605 38.462 0.00 0.00 0.00 3.69
1485 1504 5.885912 AGTATTTCAGGCCGTGTCATTTATT 59.114 36.000 0.00 0.00 0.00 1.40
1538 1557 8.565896 TGATCAGAGTGCTTGTAATTGTAAAT 57.434 30.769 0.00 0.00 0.00 1.40
1545 1564 7.458409 AACAAATGATCAGAGTGCTTGTAAT 57.542 32.000 0.09 0.00 0.00 1.89
1560 1579 4.455877 GTCTGTTCCGGAGAAACAAATGAT 59.544 41.667 3.34 0.00 32.58 2.45
1623 1642 7.040494 TCAAATCATCTCTAGACTTCTGCTTG 58.960 38.462 0.00 0.00 0.00 4.01
1656 1675 5.964887 TTTTCATTGCTATTTTATGCGGC 57.035 34.783 0.00 0.00 0.00 6.53
1698 1717 0.391793 CCTTCACCGGGAGAAGAAGC 60.392 60.000 29.67 0.00 44.00 3.86
1704 1723 3.319198 GTGGCCTTCACCGGGAGA 61.319 66.667 6.32 0.00 40.39 3.71
1706 1725 3.636231 CTGTGGCCTTCACCGGGA 61.636 66.667 6.32 0.00 45.48 5.14
1707 1726 2.690653 TTTCTGTGGCCTTCACCGGG 62.691 60.000 6.32 0.00 45.48 5.73
1708 1727 0.609131 ATTTCTGTGGCCTTCACCGG 60.609 55.000 3.32 0.00 45.48 5.28
1709 1728 0.804989 GATTTCTGTGGCCTTCACCG 59.195 55.000 3.32 0.00 45.48 4.94
1710 1729 1.815003 CAGATTTCTGTGGCCTTCACC 59.185 52.381 3.32 0.00 45.48 4.02
1742 1762 9.607988 AATCCACACAGACATATTTTTATCGTA 57.392 29.630 0.00 0.00 0.00 3.43
1743 1763 8.397906 CAATCCACACAGACATATTTTTATCGT 58.602 33.333 0.00 0.00 0.00 3.73
1744 1764 8.397906 ACAATCCACACAGACATATTTTTATCG 58.602 33.333 0.00 0.00 0.00 2.92
1757 1777 5.875224 TGGAAATCTTACAATCCACACAGA 58.125 37.500 0.00 0.00 37.05 3.41
1760 1780 7.094205 ACTCATTGGAAATCTTACAATCCACAC 60.094 37.037 0.00 0.00 41.48 3.82
1769 1789 6.446318 TGCAACAACTCATTGGAAATCTTAC 58.554 36.000 0.00 0.00 40.42 2.34
1920 1940 5.695851 CCTAATGGGAATGAAGTATGCAC 57.304 43.478 0.00 0.00 37.23 4.57
2001 2021 4.229876 GTGTGCTGCCTGATTTTAGTTTC 58.770 43.478 0.00 0.00 0.00 2.78
2009 2029 1.279496 TCTAGGTGTGCTGCCTGATT 58.721 50.000 0.00 0.00 37.54 2.57
2018 2038 1.312815 GCCCAATCATCTAGGTGTGC 58.687 55.000 2.20 0.00 0.00 4.57
2041 2061 2.035832 AGGCTACATTTGTGCAAACCAC 59.964 45.455 0.00 0.00 44.90 4.16
2042 2062 2.295909 GAGGCTACATTTGTGCAAACCA 59.704 45.455 0.00 0.00 32.51 3.67
2043 2063 2.295909 TGAGGCTACATTTGTGCAAACC 59.704 45.455 0.00 0.00 32.51 3.27
2044 2064 3.641437 TGAGGCTACATTTGTGCAAAC 57.359 42.857 0.00 0.00 32.51 2.93
2045 2065 3.825585 TGATGAGGCTACATTTGTGCAAA 59.174 39.130 0.00 0.00 34.46 3.68
2046 2066 3.419943 TGATGAGGCTACATTTGTGCAA 58.580 40.909 0.00 0.00 0.00 4.08
2047 2067 3.011818 CTGATGAGGCTACATTTGTGCA 58.988 45.455 0.00 0.00 0.00 4.57
2048 2068 3.273434 TCTGATGAGGCTACATTTGTGC 58.727 45.455 0.00 0.00 0.00 4.57
2049 2069 5.885230 TTTCTGATGAGGCTACATTTGTG 57.115 39.130 0.00 0.00 0.00 3.33
2050 2070 8.462016 GTTATTTTCTGATGAGGCTACATTTGT 58.538 33.333 0.00 0.00 0.00 2.83
2051 2071 8.680903 AGTTATTTTCTGATGAGGCTACATTTG 58.319 33.333 0.00 0.00 0.00 2.32
2052 2072 8.680903 CAGTTATTTTCTGATGAGGCTACATTT 58.319 33.333 0.00 0.00 35.20 2.32
2053 2073 8.049117 TCAGTTATTTTCTGATGAGGCTACATT 58.951 33.333 0.00 0.00 37.07 2.71
2054 2074 7.568349 TCAGTTATTTTCTGATGAGGCTACAT 58.432 34.615 0.00 0.00 37.07 2.29
2055 2075 6.946340 TCAGTTATTTTCTGATGAGGCTACA 58.054 36.000 0.00 0.00 37.07 2.74
2056 2076 7.849804 TTCAGTTATTTTCTGATGAGGCTAC 57.150 36.000 0.00 0.00 40.83 3.58
2058 2078 9.282569 GATATTCAGTTATTTTCTGATGAGGCT 57.717 33.333 0.00 0.00 40.83 4.58
2059 2079 9.282569 AGATATTCAGTTATTTTCTGATGAGGC 57.717 33.333 0.00 0.00 40.83 4.70
2077 2097 4.352893 TGTGAGACCCACTGAGATATTCA 58.647 43.478 0.00 0.00 45.86 2.57
2078 2098 4.646945 TCTGTGAGACCCACTGAGATATTC 59.353 45.833 0.00 0.00 45.06 1.75
2103 2123 3.683847 GCTTATGTCCCTCTCATGCAGTT 60.684 47.826 0.00 0.00 0.00 3.16
2132 2152 9.836076 GTTAGTGGGCTACTTAATTTTGTTTAG 57.164 33.333 9.37 0.00 40.89 1.85
2139 2159 7.713942 CCGATTAGTTAGTGGGCTACTTAATTT 59.286 37.037 9.37 0.00 40.89 1.82
2142 2162 5.452356 GCCGATTAGTTAGTGGGCTACTTAA 60.452 44.000 9.37 2.34 40.89 1.85
2165 2185 2.224018 TGGCAACCAAAACAGAAGATGC 60.224 45.455 0.00 0.00 0.00 3.91
2168 2188 1.754226 GGTGGCAACCAAAACAGAAGA 59.246 47.619 5.00 0.00 46.75 2.87
2193 2213 5.474578 TGAAAGCACAGTTCTATCAGACT 57.525 39.130 0.00 0.00 0.00 3.24
2260 2280 2.475466 GGTCGTCATCTCGCCGGTA 61.475 63.158 1.90 0.00 0.00 4.02
2280 2300 0.104304 CGATAAGAAGACCGGGTGGG 59.896 60.000 3.30 0.00 40.75 4.61
2281 2301 0.104304 CCGATAAGAAGACCGGGTGG 59.896 60.000 3.30 0.00 38.42 4.61
2284 2304 0.177141 TTGCCGATAAGAAGACCGGG 59.823 55.000 6.32 0.00 42.02 5.73
2302 2322 1.862602 GCTTCCCCGTCGCAACATTT 61.863 55.000 0.00 0.00 0.00 2.32
2303 2323 2.332654 GCTTCCCCGTCGCAACATT 61.333 57.895 0.00 0.00 0.00 2.71
2304 2324 2.746277 GCTTCCCCGTCGCAACAT 60.746 61.111 0.00 0.00 0.00 2.71
2307 2340 2.668212 CAAGCTTCCCCGTCGCAA 60.668 61.111 0.00 0.00 0.00 4.85
2322 2355 0.685785 AGCTGATCTCTCCGCCTCAA 60.686 55.000 0.00 0.00 32.49 3.02
2499 2557 9.862371 ATAAATACACACACAAACAGAAACAAA 57.138 25.926 0.00 0.00 0.00 2.83
2508 2568 8.664798 TGCTGATAGATAAATACACACACAAAC 58.335 33.333 0.00 0.00 0.00 2.93
2579 2641 4.244066 GCATATAGTGAGCTCATCAGTGG 58.756 47.826 21.47 10.05 41.83 4.00
2604 2666 9.855021 ACAAAATTTGATTTACATAGGTGCTAC 57.145 29.630 13.19 0.00 0.00 3.58
2624 2686 4.996758 GGCTCTTATTGCAAACCACAAAAT 59.003 37.500 1.71 0.00 0.00 1.82
2657 2719 5.212194 CAAATCATAAAATACGCCCTTCGG 58.788 41.667 0.00 0.00 43.86 4.30
2662 2724 3.959943 ACGCAAATCATAAAATACGCCC 58.040 40.909 0.00 0.00 0.00 6.13
2664 2726 3.115736 GCGACGCAAATCATAAAATACGC 59.884 43.478 16.42 0.00 35.06 4.42
2666 2728 5.681105 ACATGCGACGCAAATCATAAAATAC 59.319 36.000 28.24 0.00 43.62 1.89
2668 2730 4.671377 ACATGCGACGCAAATCATAAAAT 58.329 34.783 28.24 2.58 43.62 1.82
2669 2731 4.090138 ACATGCGACGCAAATCATAAAA 57.910 36.364 28.24 0.00 43.62 1.52
2673 2735 2.031769 CCATACATGCGACGCAAATCAT 60.032 45.455 28.24 14.37 43.62 2.45
2675 2737 1.921573 GCCATACATGCGACGCAAATC 60.922 52.381 28.24 8.09 43.62 2.17
2676 2738 0.029300 GCCATACATGCGACGCAAAT 59.971 50.000 28.24 19.57 43.62 2.32
2678 2740 2.468670 GGCCATACATGCGACGCAA 61.469 57.895 28.24 11.33 43.62 4.85
2679 2741 2.894879 GGCCATACATGCGACGCA 60.895 61.111 26.68 26.68 44.86 5.24
2680 2742 4.000557 CGGCCATACATGCGACGC 62.001 66.667 14.19 14.19 0.00 5.19
2681 2743 4.000557 GCGGCCATACATGCGACG 62.001 66.667 2.24 0.00 34.18 5.12
2754 2839 6.139671 TCTTTCTCTGCCTCTCCTGTTATAT 58.860 40.000 0.00 0.00 0.00 0.86
2762 2847 1.194218 AGCTCTTTCTCTGCCTCTCC 58.806 55.000 0.00 0.00 0.00 3.71
2905 2990 3.400255 ACGTGCCTTTCTACTCTTTTCC 58.600 45.455 0.00 0.00 0.00 3.13
3041 3133 9.722056 CAAAATGTTAAGTCCACATCTTATAGC 57.278 33.333 0.00 0.00 33.54 2.97
3080 3172 4.481930 TCTTTGTACAGGCGAATTTGTG 57.518 40.909 0.00 0.00 0.00 3.33
3092 3184 5.047021 AGTGCTCTTAGCTCATCTTTGTACA 60.047 40.000 0.00 0.00 42.97 2.90
3101 3193 4.502962 GTTTGAGAGTGCTCTTAGCTCAT 58.497 43.478 2.99 0.00 42.97 2.90
3195 3296 3.927163 AATGTGCGTCCGGACCGAC 62.927 63.158 28.52 23.32 35.53 4.79
3196 3297 2.718747 AAAATGTGCGTCCGGACCGA 62.719 55.000 28.52 12.58 35.53 4.69
3203 3304 2.136196 TTGCGGGAAAATGTGCGTCC 62.136 55.000 0.00 0.00 0.00 4.79
3208 3309 0.991344 GCGATTTGCGGGAAAATGTG 59.009 50.000 0.00 0.00 41.29 3.21
3209 3310 3.416955 GCGATTTGCGGGAAAATGT 57.583 47.368 0.00 0.00 41.29 2.71
3233 3334 0.699981 TTTAGGTGGGCCAGGGTAAC 59.300 55.000 6.40 0.00 37.19 2.50
3234 3335 1.458017 TTTTAGGTGGGCCAGGGTAA 58.542 50.000 6.40 1.82 37.19 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.