Multiple sequence alignment - TraesCS1A01G321100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G321100 chr1A 100.000 4525 0 0 1 4525 511498926 511503450 0.000000e+00 8357.0
1 TraesCS1A01G321100 chr1A 76.868 281 58 6 1424 1699 552951834 552951556 7.840000e-33 152.0
2 TraesCS1A01G321100 chr1D 89.998 4149 233 75 1 4041 414774518 414778592 0.000000e+00 5195.0
3 TraesCS1A01G321100 chr1D 91.667 312 24 2 4215 4525 467233216 467232906 8.990000e-117 431.0
4 TraesCS1A01G321100 chr1D 91.374 313 26 1 4214 4525 22637360 22637672 1.160000e-115 427.0
5 TraesCS1A01G321100 chr1D 91.374 313 26 1 4214 4525 234376205 234375893 1.160000e-115 427.0
6 TraesCS1A01G321100 chr1D 91.374 313 25 2 4215 4525 342457001 342457313 1.160000e-115 427.0
7 TraesCS1A01G321100 chr1D 91.346 312 27 0 4214 4525 355344705 355345016 1.160000e-115 427.0
8 TraesCS1A01G321100 chr1D 79.741 232 43 4 3799 4029 78132986 78132758 1.010000e-36 165.0
9 TraesCS1A01G321100 chr1D 76.868 281 58 6 1424 1699 461486977 461486699 7.840000e-33 152.0
10 TraesCS1A01G321100 chr1D 76.812 276 58 5 3793 4067 417257777 417257507 2.820000e-32 150.0
11 TraesCS1A01G321100 chr1B 93.735 1676 61 24 539 2198 560250901 560252548 0.000000e+00 2473.0
12 TraesCS1A01G321100 chr1B 89.993 1389 61 31 2209 3546 560252630 560253991 0.000000e+00 1724.0
13 TraesCS1A01G321100 chr1B 90.231 389 30 7 6 391 560225975 560226358 6.760000e-138 501.0
14 TraesCS1A01G321100 chr1B 87.582 153 11 6 4066 4211 560254556 560254707 2.160000e-38 171.0
15 TraesCS1A01G321100 chr1B 76.277 274 54 9 1424 1690 634601099 634601368 7.900000e-28 135.0
16 TraesCS1A01G321100 chr1B 75.000 124 31 0 1576 1699 634413629 634413506 1.760000e-04 58.4
17 TraesCS1A01G321100 chr5D 91.401 314 24 3 4214 4525 404551952 404551640 1.160000e-115 427.0
18 TraesCS1A01G321100 chr3D 91.374 313 26 1 4214 4525 525553801 525553489 1.160000e-115 427.0
19 TraesCS1A01G321100 chr3D 85.475 179 22 4 1150 1326 110310928 110310752 2.780000e-42 183.0
20 TraesCS1A01G321100 chr3D 80.328 244 44 4 3795 4037 123617404 123617164 1.000000e-41 182.0
21 TraesCS1A01G321100 chr3D 79.741 232 44 3 3799 4029 21886505 21886734 1.010000e-36 165.0
22 TraesCS1A01G321100 chr3D 78.516 256 51 2 3809 4064 553749851 553749600 1.010000e-36 165.0
23 TraesCS1A01G321100 chr3D 77.059 170 39 0 1156 1325 110245394 110245225 1.040000e-16 99.0
24 TraesCS1A01G321100 chr3D 90.909 55 5 0 1645 1699 110244771 110244717 1.750000e-09 75.0
25 TraesCS1A01G321100 chr3B 91.111 315 28 0 4211 4525 609891572 609891258 1.160000e-115 427.0
26 TraesCS1A01G321100 chr3B 84.916 179 23 3 1150 1326 161461454 161461278 1.290000e-40 178.0
27 TraesCS1A01G321100 chr3B 90.909 55 5 0 1645 1699 161377728 161377674 1.750000e-09 75.0
28 TraesCS1A01G321100 chr3A 91.346 312 27 0 4214 4525 33416270 33415959 1.160000e-115 427.0
29 TraesCS1A01G321100 chr3A 85.393 178 22 3 1150 1325 120175455 120175630 1.000000e-41 182.0
30 TraesCS1A01G321100 chr3A 83.041 171 25 3 1157 1325 120166185 120166353 7.840000e-33 152.0
31 TraesCS1A01G321100 chr3A 90.909 55 5 0 1645 1699 120224184 120224238 1.750000e-09 75.0
32 TraesCS1A01G321100 chr3A 73.333 180 43 5 3148 3324 120226847 120227024 1.360000e-05 62.1
33 TraesCS1A01G321100 chr7D 85.845 219 28 2 1403 1618 65600818 65600600 3.520000e-56 230.0
34 TraesCS1A01G321100 chr7D 86.111 144 18 2 1906 2049 68791068 68791209 2.180000e-33 154.0
35 TraesCS1A01G321100 chr7D 79.147 211 33 10 1118 1321 68790247 68790453 7.900000e-28 135.0
36 TraesCS1A01G321100 chr7A 85.845 219 28 2 1403 1618 69901824 69902042 3.520000e-56 230.0
37 TraesCS1A01G321100 chr7A 79.365 189 34 5 1142 1327 71146022 71145836 1.320000e-25 128.0
38 TraesCS1A01G321100 chrUn 85.455 220 27 4 1403 1618 84039760 84039542 1.640000e-54 224.0
39 TraesCS1A01G321100 chrUn 78.750 240 47 3 3795 4032 285474412 285474175 1.690000e-34 158.0
40 TraesCS1A01G321100 chrUn 78.903 237 46 3 3795 4029 347527060 347527294 1.690000e-34 158.0
41 TraesCS1A01G321100 chr2B 77.978 277 60 1 3791 4067 171098817 171098542 6.020000e-39 172.0
42 TraesCS1A01G321100 chr7B 86.111 144 20 0 1906 2049 9751281 9751424 6.060000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G321100 chr1A 511498926 511503450 4524 False 8357 8357 100.000000 1 4525 1 chr1A.!!$F1 4524
1 TraesCS1A01G321100 chr1D 414774518 414778592 4074 False 5195 5195 89.998000 1 4041 1 chr1D.!!$F4 4040
2 TraesCS1A01G321100 chr1B 560250901 560254707 3806 False 1456 2473 90.436667 539 4211 3 chr1B.!!$F3 3672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 308 0.101759 TAGGGTCGAACTATGTGCGC 59.898 55.0 0.00 0.00 34.09 6.09 F
505 519 0.108329 AAGTGGACGCATAAGACGGG 60.108 55.0 0.00 0.00 34.00 5.28 F
1780 1817 0.333993 TGGCCTCGAGGTAACCTACT 59.666 55.0 31.43 0.00 37.57 2.57 F
2603 2741 0.659957 GCTAAGCTAGGTGCATGCAC 59.340 55.0 37.29 37.29 45.94 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1839 0.105039 GAGCCGGTGAGATTAGTGGG 59.895 60.000 1.90 0.00 0.00 4.61 R
2478 2609 1.872234 CATGAGCGTGCTTGCATGC 60.872 57.895 26.59 26.59 37.31 4.06 R
3017 3188 0.319297 AGACCGCTTTGTCACGTACC 60.319 55.000 0.00 0.00 37.73 3.34 R
4435 4739 0.030101 GATCAAGAGCTCGAGGGACG 59.970 60.000 15.58 0.00 44.09 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.742268 GCAGCTTCCTTGATCCAAGAC 59.258 52.381 8.16 0.00 43.42 3.01
48 49 2.164624 CGTAGTCCCTTCTTCCTGACTG 59.835 54.545 0.00 0.00 38.46 3.51
49 50 0.980423 AGTCCCTTCTTCCTGACTGC 59.020 55.000 0.00 0.00 36.74 4.40
52 53 1.301293 CCTTCTTCCTGACTGCCCC 59.699 63.158 0.00 0.00 0.00 5.80
57 58 2.274542 TCTTCCTGACTGCCCCAAATA 58.725 47.619 0.00 0.00 0.00 1.40
72 73 5.985530 GCCCCAAATAATTAATCAACAGCTC 59.014 40.000 0.00 0.00 0.00 4.09
79 80 0.174845 TAATCAACAGCTCGGACCCG 59.825 55.000 1.31 1.31 41.35 5.28
121 122 6.096673 TGCATGTGTTAGAGAGTAAGACAA 57.903 37.500 0.00 0.00 34.98 3.18
187 189 5.637810 TCTTAGTTACCGTTCTGCAATCTTG 59.362 40.000 0.00 0.00 0.00 3.02
193 196 3.003689 ACCGTTCTGCAATCTTGAACTTG 59.996 43.478 12.32 7.18 38.23 3.16
201 204 6.092670 TCTGCAATCTTGAACTTGTATACTGC 59.907 38.462 4.17 1.73 0.00 4.40
210 213 2.094390 ACTTGTATACTGCCGAAGCGAA 60.094 45.455 4.17 0.00 44.31 4.70
227 230 2.870411 GCGAAGTTTGTTGACCACTAGT 59.130 45.455 0.00 0.00 0.00 2.57
233 236 2.238942 TGTTGACCACTAGTGTGCAG 57.761 50.000 21.18 8.57 42.54 4.41
235 238 0.250295 TTGACCACTAGTGTGCAGCC 60.250 55.000 21.18 0.00 42.54 4.85
236 239 1.371183 GACCACTAGTGTGCAGCCA 59.629 57.895 21.18 0.00 42.54 4.75
248 251 3.571119 CAGCCACACTACTGCTGC 58.429 61.111 0.00 0.00 45.09 5.25
249 252 2.047844 AGCCACACTACTGCTGCG 60.048 61.111 0.00 0.00 33.23 5.18
260 263 3.047718 CTGCTGCGGAATGGTGCTG 62.048 63.158 1.17 0.00 0.00 4.41
304 307 2.572191 TTAGGGTCGAACTATGTGCG 57.428 50.000 0.00 0.00 35.64 5.34
305 308 0.101759 TAGGGTCGAACTATGTGCGC 59.898 55.000 0.00 0.00 34.09 6.09
318 321 1.276844 GTGCGCGATGAAGGCATAC 59.723 57.895 12.10 0.00 39.14 2.39
352 356 5.113383 TGTATCTGAAAGTGAAACGTGTGT 58.887 37.500 0.00 0.00 45.86 3.72
363 367 7.347508 AGTGAAACGTGTGTGATAACTAATC 57.652 36.000 0.00 0.00 45.86 1.75
368 372 9.297586 GAAACGTGTGTGATAACTAATCTATCA 57.702 33.333 0.00 0.00 35.45 2.15
402 416 3.121030 GAGAGCCGCGTGTGCATT 61.121 61.111 4.92 0.00 42.97 3.56
403 417 3.372676 GAGAGCCGCGTGTGCATTG 62.373 63.158 4.92 0.00 42.97 2.82
418 432 2.095692 TGCATTGTTCGATCATCCAACG 59.904 45.455 0.00 0.00 0.00 4.10
464 478 2.163412 CACGAGAAGAGAAGGAGGACAG 59.837 54.545 0.00 0.00 0.00 3.51
477 491 2.064581 GGACAGTAGGGCGGGACAT 61.065 63.158 0.00 0.00 0.00 3.06
480 494 1.000955 GACAGTAGGGCGGGACATATG 59.999 57.143 0.00 0.00 0.00 1.78
488 502 3.081804 GGGCGGGACATATGGAAATAAG 58.918 50.000 7.80 0.00 0.00 1.73
498 512 6.530120 ACATATGGAAATAAGTGGACGCATA 58.470 36.000 7.80 0.00 0.00 3.14
500 514 7.173218 ACATATGGAAATAAGTGGACGCATAAG 59.827 37.037 7.80 0.00 0.00 1.73
502 516 4.873827 TGGAAATAAGTGGACGCATAAGAC 59.126 41.667 0.00 0.00 0.00 3.01
505 519 0.108329 AAGTGGACGCATAAGACGGG 60.108 55.000 0.00 0.00 34.00 5.28
506 520 1.217244 GTGGACGCATAAGACGGGT 59.783 57.895 0.00 0.00 34.00 5.28
523 537 2.158841 CGGGTAACAATGTCTTCCGTTG 59.841 50.000 11.23 0.00 44.23 4.10
524 538 2.486592 GGGTAACAATGTCTTCCGTTGG 59.513 50.000 0.00 0.00 43.17 3.77
532 546 1.066071 TGTCTTCCGTTGGAACACACA 60.066 47.619 3.00 0.74 36.09 3.72
533 547 2.218603 GTCTTCCGTTGGAACACACAT 58.781 47.619 0.00 0.00 39.29 3.21
534 548 2.032030 GTCTTCCGTTGGAACACACATG 60.032 50.000 0.00 0.00 39.29 3.21
542 556 4.615949 GTTGGAACACACATGCATTTGTA 58.384 39.130 17.69 0.00 39.29 2.41
544 558 3.888323 TGGAACACACATGCATTTGTACT 59.112 39.130 17.69 8.24 0.00 2.73
545 559 5.066593 TGGAACACACATGCATTTGTACTA 58.933 37.500 17.69 8.18 0.00 1.82
584 612 9.593134 ACAAATTTAGTGTGTTTAGCATCAAAA 57.407 25.926 0.00 0.00 0.00 2.44
618 646 2.188817 CCTTAGCCACTGAGTAACCCT 58.811 52.381 0.00 0.00 0.00 4.34
626 654 4.208746 CCACTGAGTAACCCTAGTCCTAG 58.791 52.174 0.00 0.00 0.00 3.02
632 660 7.092083 ACTGAGTAACCCTAGTCCTAGAATGTA 60.092 40.741 2.86 0.00 35.21 2.29
633 661 7.059156 TGAGTAACCCTAGTCCTAGAATGTAC 58.941 42.308 2.86 0.00 35.21 2.90
634 662 7.092083 TGAGTAACCCTAGTCCTAGAATGTACT 60.092 40.741 2.86 5.23 35.21 2.73
635 663 8.342327 AGTAACCCTAGTCCTAGAATGTACTA 57.658 38.462 2.86 0.00 35.21 1.82
668 696 2.940083 GCGGGGGCCTAAAATATCTAGC 60.940 54.545 0.84 0.00 0.00 3.42
716 744 1.156736 CCAGTCGACCAATCAACACC 58.843 55.000 13.01 0.00 0.00 4.16
829 857 2.055838 TCACAAAGATGCGTACGTGAC 58.944 47.619 17.90 8.23 0.00 3.67
830 858 1.790043 CACAAAGATGCGTACGTGACA 59.210 47.619 17.90 6.84 0.00 3.58
834 862 1.166129 AGATGCGTACGTGACAGACT 58.834 50.000 17.90 7.43 0.00 3.24
998 1035 3.945304 CTCCCCGCCGTAACCACAC 62.945 68.421 0.00 0.00 0.00 3.82
999 1036 4.317444 CCCCGCCGTAACCACACA 62.317 66.667 0.00 0.00 0.00 3.72
1000 1037 3.045492 CCCGCCGTAACCACACAC 61.045 66.667 0.00 0.00 0.00 3.82
1003 1040 1.888172 CGCCGTAACCACACACCAA 60.888 57.895 0.00 0.00 0.00 3.67
1057 1094 1.504359 GTGCGTTGCTGGTAGTTACA 58.496 50.000 0.00 0.00 0.00 2.41
1058 1095 1.459592 GTGCGTTGCTGGTAGTTACAG 59.540 52.381 0.00 0.00 38.95 2.74
1059 1096 1.069513 TGCGTTGCTGGTAGTTACAGT 59.930 47.619 0.00 0.00 38.22 3.55
1060 1097 1.459592 GCGTTGCTGGTAGTTACAGTG 59.540 52.381 0.00 0.00 38.22 3.66
1314 1351 4.925576 GGCCGCGTCATCGTCGAT 62.926 66.667 4.92 0.75 38.23 3.59
1339 1376 1.134401 TCGGTACCTACCTACCACTCG 60.134 57.143 10.90 0.00 44.25 4.18
1358 1395 6.273825 CACTCGGTCTATGTAAGCTGTAAAT 58.726 40.000 0.00 0.00 0.00 1.40
1402 1439 5.234757 TGAACGTGACAAAGTTGGTGTATAC 59.765 40.000 0.00 0.00 0.00 1.47
1517 1554 2.040544 CCACCACCATGGACTTCGC 61.041 63.158 21.47 0.00 43.02 4.70
1608 1645 4.194720 CGGAAGCTCCTCCCGTCG 62.195 72.222 0.00 0.00 38.55 5.12
1780 1817 0.333993 TGGCCTCGAGGTAACCTACT 59.666 55.000 31.43 0.00 37.57 2.57
1802 1839 1.003233 CCTACTTTGTCCACCACCTCC 59.997 57.143 0.00 0.00 0.00 4.30
2022 2078 3.959991 GACGGGTGCCTCAAGAGCC 62.960 68.421 0.00 0.00 0.00 4.70
2173 2229 5.186198 CCCTCAGAATTTCGGTAAGTTGAT 58.814 41.667 0.00 0.00 0.00 2.57
2174 2230 5.065218 CCCTCAGAATTTCGGTAAGTTGATG 59.935 44.000 0.00 0.00 0.00 3.07
2175 2231 5.874810 CCTCAGAATTTCGGTAAGTTGATGA 59.125 40.000 0.00 0.00 0.00 2.92
2199 2255 5.465935 TGCAGTTTCGTCTTCAAAACTTTT 58.534 33.333 0.00 0.00 41.67 2.27
2266 2397 4.245845 TGTTTAAAAATCTTCCCACGGC 57.754 40.909 0.00 0.00 0.00 5.68
2339 2470 2.865598 TTGTGCCCGGCCAAACATG 61.866 57.895 7.03 0.00 0.00 3.21
2402 2533 1.880340 GGAATCGAGCTGCCGTGAG 60.880 63.158 0.00 0.00 0.00 3.51
2496 2634 1.872234 GCATGCAAGCACGCTCATG 60.872 57.895 14.21 13.59 39.29 3.07
2530 2668 1.069771 GCTACTCCGCGAGAGACATAC 60.070 57.143 25.01 10.18 46.50 2.39
2531 2669 2.210961 CTACTCCGCGAGAGACATACA 58.789 52.381 25.01 7.27 46.50 2.29
2532 2670 1.681538 ACTCCGCGAGAGACATACAT 58.318 50.000 25.01 4.31 46.50 2.29
2533 2671 2.847441 ACTCCGCGAGAGACATACATA 58.153 47.619 25.01 0.00 46.50 2.29
2557 2695 7.765695 ACATTTATCCAAAGTTGAGTCACAT 57.234 32.000 0.00 0.00 0.00 3.21
2559 2697 8.084073 ACATTTATCCAAAGTTGAGTCACATTG 58.916 33.333 0.00 0.00 0.00 2.82
2588 2726 7.307219 GCTTTCTTTGACGTAGAGAAAAGCTAA 60.307 37.037 20.83 9.79 38.50 3.09
2589 2727 7.639162 TTCTTTGACGTAGAGAAAAGCTAAG 57.361 36.000 5.55 0.00 31.71 2.18
2590 2728 5.634020 TCTTTGACGTAGAGAAAAGCTAAGC 59.366 40.000 0.00 0.00 31.71 3.09
2591 2729 4.785511 TGACGTAGAGAAAAGCTAAGCT 57.214 40.909 0.00 0.00 42.56 3.74
2592 2730 5.892160 TGACGTAGAGAAAAGCTAAGCTA 57.108 39.130 0.00 0.00 38.25 3.32
2593 2731 5.881447 TGACGTAGAGAAAAGCTAAGCTAG 58.119 41.667 0.00 0.00 38.25 3.42
2594 2732 5.163642 TGACGTAGAGAAAAGCTAAGCTAGG 60.164 44.000 0.00 0.00 38.25 3.02
2595 2733 4.705991 ACGTAGAGAAAAGCTAAGCTAGGT 59.294 41.667 0.00 0.00 38.25 3.08
2597 2735 3.867857 AGAGAAAAGCTAAGCTAGGTGC 58.132 45.455 0.00 0.00 38.25 5.01
2598 2736 3.261897 AGAGAAAAGCTAAGCTAGGTGCA 59.738 43.478 6.97 0.00 45.94 4.57
2603 2741 0.659957 GCTAAGCTAGGTGCATGCAC 59.340 55.000 37.29 37.29 45.94 4.57
2621 2759 2.584791 CACGCACAATAAGCTTTGGAC 58.415 47.619 3.20 0.00 0.00 4.02
2683 2821 3.004419 TCGGCTAATTATCAGTGGTCGAG 59.996 47.826 0.00 0.00 0.00 4.04
2686 2824 4.508124 GGCTAATTATCAGTGGTCGAGTTG 59.492 45.833 0.00 0.00 0.00 3.16
2701 2839 5.334569 GGTCGAGTTGTATATGCTCTCTCTC 60.335 48.000 11.86 0.00 0.00 3.20
2933 3104 3.363970 CCCGAAAAGTCATGTTCACGAAG 60.364 47.826 0.00 0.00 0.00 3.79
2993 3164 2.293677 ACGATCTCATCCATCACGTACC 59.706 50.000 0.00 0.00 0.00 3.34
3017 3188 1.025041 TCGTCTCCTCATGGTCATCG 58.975 55.000 0.00 0.00 34.23 3.84
3018 3189 0.031314 CGTCTCCTCATGGTCATCGG 59.969 60.000 0.00 0.00 34.23 4.18
3120 3307 1.810151 TGATAGAAACGGCTTTGGTGC 59.190 47.619 0.00 0.00 0.00 5.01
3165 3352 3.730761 CTGAAGGTGTGCTGCGGC 61.731 66.667 11.65 11.65 39.26 6.53
3435 3625 1.984424 TGATCAAGTGTGGTGGGATCA 59.016 47.619 0.00 0.00 41.31 2.92
3542 3736 2.158813 GGTTGCCTCCGGAGAATGAATA 60.159 50.000 33.39 7.59 0.00 1.75
3572 3771 9.787435 AAAACTATAGATGTGTTGTTTGAGGTA 57.213 29.630 6.78 0.00 0.00 3.08
3617 3817 0.470341 GGAAATAGCTTCGAGCCCCT 59.530 55.000 0.00 0.00 43.77 4.79
3660 3860 5.447818 GGAATGAATTCAACGAGGTCATCAC 60.448 44.000 13.09 0.00 38.53 3.06
3677 3877 4.701651 TCATCACTTCCCTTGCTATGTTTG 59.298 41.667 0.00 0.00 0.00 2.93
3680 3880 3.191371 CACTTCCCTTGCTATGTTTGGTC 59.809 47.826 0.00 0.00 0.00 4.02
3693 3893 1.002792 GTTTGGTCAGTTCCGCTTGAC 60.003 52.381 0.00 0.00 0.00 3.18
3694 3894 0.179234 TTGGTCAGTTCCGCTTGACA 59.821 50.000 6.91 0.00 33.35 3.58
3695 3895 0.179234 TGGTCAGTTCCGCTTGACAA 59.821 50.000 6.91 0.00 33.35 3.18
3706 3906 2.988493 CCGCTTGACAATGATTTTGGTG 59.012 45.455 0.00 0.00 0.00 4.17
3720 3920 3.781079 TTTGGTGATTGATTCCGCATC 57.219 42.857 0.00 0.00 0.00 3.91
3779 3979 0.670546 CCGCCATGTTCGTCAAGTCT 60.671 55.000 0.00 0.00 0.00 3.24
3790 3990 1.200716 CGTCAAGTCTTGGCATGCATT 59.799 47.619 21.36 0.92 34.15 3.56
3797 3997 1.205179 TCTTGGCATGCATTTGCGAAT 59.795 42.857 21.36 0.00 45.83 3.34
3804 4004 4.292599 GCATGCATTTGCGAATCAATCTA 58.707 39.130 14.21 0.00 45.83 1.98
3814 4014 4.516321 TGCGAATCAATCTATGGTTGGATG 59.484 41.667 0.00 0.00 30.63 3.51
3815 4015 4.516698 GCGAATCAATCTATGGTTGGATGT 59.483 41.667 0.00 0.00 30.63 3.06
3820 4020 8.469309 AATCAATCTATGGTTGGATGTTTAGG 57.531 34.615 0.00 0.00 28.83 2.69
3825 4025 3.713826 TGGTTGGATGTTTAGGAGGAC 57.286 47.619 0.00 0.00 0.00 3.85
3887 4087 4.671377 TGATATTGGTGCTCGCATTTTTC 58.329 39.130 0.00 0.00 0.00 2.29
3889 4089 5.588246 TGATATTGGTGCTCGCATTTTTCTA 59.412 36.000 0.00 0.00 0.00 2.10
3923 4123 5.177511 CAGACTTTCTAACGATGTGCTTTCA 59.822 40.000 0.00 0.00 0.00 2.69
3927 4127 4.251543 TCTAACGATGTGCTTTCAGTGA 57.748 40.909 0.00 0.00 0.00 3.41
3928 4128 4.627058 TCTAACGATGTGCTTTCAGTGAA 58.373 39.130 0.08 0.08 0.00 3.18
3967 4167 2.191354 TACGAAGACGACTGTGGCGG 62.191 60.000 0.00 0.00 42.66 6.13
4006 4206 5.421693 AGATAATGTGTCAGCTCAGTCTCTT 59.578 40.000 0.00 0.00 0.00 2.85
4011 4211 3.005261 GTGTCAGCTCAGTCTCTTGAAGA 59.995 47.826 0.00 0.00 0.00 2.87
4029 4233 2.552367 AGATGCTAATAGGGGTAGGGC 58.448 52.381 0.00 0.00 0.00 5.19
4042 4246 1.005294 GTAGGGCGTACGTGTGTGTG 61.005 60.000 17.90 0.00 0.00 3.82
4043 4247 1.454572 TAGGGCGTACGTGTGTGTGT 61.455 55.000 17.90 0.00 0.00 3.72
4044 4248 2.591311 GGGCGTACGTGTGTGTGTG 61.591 63.158 17.90 0.00 0.00 3.82
4045 4249 1.879430 GGCGTACGTGTGTGTGTGT 60.879 57.895 17.90 0.00 0.00 3.72
4046 4250 1.271549 GCGTACGTGTGTGTGTGTG 59.728 57.895 17.90 0.00 0.00 3.82
4047 4251 1.415288 GCGTACGTGTGTGTGTGTGT 61.415 55.000 17.90 0.00 0.00 3.72
4048 4252 0.993532 CGTACGTGTGTGTGTGTGTT 59.006 50.000 7.22 0.00 0.00 3.32
4049 4253 1.390803 CGTACGTGTGTGTGTGTGTTT 59.609 47.619 7.22 0.00 0.00 2.83
4055 4259 5.802064 ACGTGTGTGTGTGTGTTTATAAAG 58.198 37.500 0.00 0.00 0.00 1.85
4056 4260 5.581479 ACGTGTGTGTGTGTGTTTATAAAGA 59.419 36.000 0.00 0.00 0.00 2.52
4067 4271 9.161629 TGTGTGTTTATAAAGATGAGTGTATGG 57.838 33.333 0.00 0.00 0.00 2.74
4068 4272 9.378551 GTGTGTTTATAAAGATGAGTGTATGGA 57.621 33.333 0.00 0.00 0.00 3.41
4070 4274 9.378551 GTGTTTATAAAGATGAGTGTATGGACA 57.621 33.333 0.00 0.00 0.00 4.02
4071 4275 9.952030 TGTTTATAAAGATGAGTGTATGGACAA 57.048 29.630 0.00 0.00 37.31 3.18
4075 4279 4.801330 AGATGAGTGTATGGACAAACGA 57.199 40.909 0.00 0.00 37.31 3.85
4076 4280 4.495422 AGATGAGTGTATGGACAAACGAC 58.505 43.478 0.00 0.00 37.31 4.34
4082 4381 1.990563 GTATGGACAAACGACTCCACG 59.009 52.381 0.00 0.00 39.44 4.94
4088 4387 1.931172 ACAAACGACTCCACGACAAAG 59.069 47.619 0.00 0.00 37.03 2.77
4095 4394 3.308866 CGACTCCACGACAAAGTTTTCTT 59.691 43.478 0.00 0.00 37.30 2.52
4096 4395 4.588278 GACTCCACGACAAAGTTTTCTTG 58.412 43.478 0.00 0.00 40.37 3.02
4098 4397 3.013921 TCCACGACAAAGTTTTCTTGCT 58.986 40.909 0.00 0.00 40.37 3.91
4118 4417 4.680237 GCCGGTTTTTGCAGGCCC 62.680 66.667 1.90 0.00 42.57 5.80
4124 4423 1.202746 GGTTTTTGCAGGCCCATTTCA 60.203 47.619 0.00 0.00 0.00 2.69
4127 4426 1.112315 TTTGCAGGCCCATTTCACGT 61.112 50.000 0.00 0.00 0.00 4.49
4166 4465 8.879427 AATTTCAAAGTTAATAGCCTAGGTGT 57.121 30.769 11.31 0.37 0.00 4.16
4168 4467 7.681939 TTCAAAGTTAATAGCCTAGGTGTTG 57.318 36.000 11.31 2.58 0.00 3.33
4170 4469 6.877322 TCAAAGTTAATAGCCTAGGTGTTGAC 59.123 38.462 11.31 9.64 0.00 3.18
4171 4470 5.354842 AGTTAATAGCCTAGGTGTTGACC 57.645 43.478 11.31 0.00 43.52 4.02
4172 4471 4.781087 AGTTAATAGCCTAGGTGTTGACCA 59.219 41.667 11.31 0.00 45.98 4.02
4173 4472 5.249852 AGTTAATAGCCTAGGTGTTGACCAA 59.750 40.000 11.31 0.00 45.98 3.67
4174 4473 4.862641 AATAGCCTAGGTGTTGACCAAT 57.137 40.909 11.31 0.00 45.98 3.16
4184 4488 0.038166 GTTGACCAATCCAGGCTCCA 59.962 55.000 0.00 0.00 0.00 3.86
4211 4515 1.277557 CTGGTCAAGGGTGAAGAGGAG 59.722 57.143 0.00 0.00 34.87 3.69
4212 4516 0.615850 GGTCAAGGGTGAAGAGGAGG 59.384 60.000 0.00 0.00 34.87 4.30
4213 4517 0.035915 GTCAAGGGTGAAGAGGAGGC 60.036 60.000 0.00 0.00 34.87 4.70
4214 4518 0.178891 TCAAGGGTGAAGAGGAGGCT 60.179 55.000 0.00 0.00 0.00 4.58
4215 4519 0.035630 CAAGGGTGAAGAGGAGGCTG 60.036 60.000 0.00 0.00 0.00 4.85
4216 4520 0.474660 AAGGGTGAAGAGGAGGCTGT 60.475 55.000 0.00 0.00 0.00 4.40
4217 4521 0.474660 AGGGTGAAGAGGAGGCTGTT 60.475 55.000 0.00 0.00 0.00 3.16
4218 4522 0.322008 GGGTGAAGAGGAGGCTGTTG 60.322 60.000 0.00 0.00 0.00 3.33
4219 4523 0.322008 GGTGAAGAGGAGGCTGTTGG 60.322 60.000 0.00 0.00 0.00 3.77
4220 4524 0.322008 GTGAAGAGGAGGCTGTTGGG 60.322 60.000 0.00 0.00 0.00 4.12
4221 4525 1.301293 GAAGAGGAGGCTGTTGGGG 59.699 63.158 0.00 0.00 0.00 4.96
4222 4526 1.151810 AAGAGGAGGCTGTTGGGGA 60.152 57.895 0.00 0.00 0.00 4.81
4223 4527 0.772124 AAGAGGAGGCTGTTGGGGAA 60.772 55.000 0.00 0.00 0.00 3.97
4224 4528 1.002011 GAGGAGGCTGTTGGGGAAC 60.002 63.158 0.00 0.00 0.00 3.62
4225 4529 2.359975 GGAGGCTGTTGGGGAACG 60.360 66.667 0.00 0.00 0.00 3.95
4226 4530 2.430367 GAGGCTGTTGGGGAACGT 59.570 61.111 0.00 0.00 0.00 3.99
4227 4531 1.675219 GAGGCTGTTGGGGAACGTA 59.325 57.895 0.00 0.00 0.00 3.57
4228 4532 0.391263 GAGGCTGTTGGGGAACGTAG 60.391 60.000 0.00 0.00 0.00 3.51
4230 4534 0.609662 GGCTGTTGGGGAACGTAGTA 59.390 55.000 0.00 0.00 45.00 1.82
4231 4535 1.673923 GGCTGTTGGGGAACGTAGTAC 60.674 57.143 0.00 0.00 45.00 2.73
4232 4536 1.274447 GCTGTTGGGGAACGTAGTACT 59.726 52.381 0.00 0.00 45.00 2.73
4233 4537 2.289257 GCTGTTGGGGAACGTAGTACTT 60.289 50.000 0.00 0.00 45.00 2.24
4234 4538 3.804759 GCTGTTGGGGAACGTAGTACTTT 60.805 47.826 0.00 0.00 45.00 2.66
4235 4539 4.561326 GCTGTTGGGGAACGTAGTACTTTA 60.561 45.833 0.00 0.00 45.00 1.85
4236 4540 5.540911 CTGTTGGGGAACGTAGTACTTTAA 58.459 41.667 0.00 0.00 45.00 1.52
4237 4541 5.923204 TGTTGGGGAACGTAGTACTTTAAA 58.077 37.500 0.00 0.00 45.00 1.52
4238 4542 6.352516 TGTTGGGGAACGTAGTACTTTAAAA 58.647 36.000 0.00 0.00 45.00 1.52
4239 4543 6.825721 TGTTGGGGAACGTAGTACTTTAAAAA 59.174 34.615 0.00 0.00 45.00 1.94
4260 4564 5.856126 AAAATTCTTACGATCACGCAAGA 57.144 34.783 0.00 0.00 45.99 3.02
4261 4565 6.422776 AAAATTCTTACGATCACGCAAGAT 57.577 33.333 6.21 0.00 46.57 2.40
4262 4566 5.643339 AATTCTTACGATCACGCAAGATC 57.357 39.130 6.21 5.52 46.57 2.75
4263 4567 4.371855 TTCTTACGATCACGCAAGATCT 57.628 40.909 12.06 0.00 46.57 2.75
4264 4568 5.494632 TTCTTACGATCACGCAAGATCTA 57.505 39.130 12.06 3.45 46.57 1.98
4265 4569 5.494632 TCTTACGATCACGCAAGATCTAA 57.505 39.130 12.06 9.06 43.86 2.10
4266 4570 5.271625 TCTTACGATCACGCAAGATCTAAC 58.728 41.667 12.06 0.00 43.86 2.34
4267 4571 3.784701 ACGATCACGCAAGATCTAACT 57.215 42.857 12.06 0.00 41.74 2.24
4268 4572 4.895224 ACGATCACGCAAGATCTAACTA 57.105 40.909 12.06 0.00 41.74 2.24
4269 4573 4.849883 ACGATCACGCAAGATCTAACTAG 58.150 43.478 12.06 0.00 41.74 2.57
4270 4574 4.222886 CGATCACGCAAGATCTAACTAGG 58.777 47.826 12.06 0.00 41.74 3.02
4271 4575 4.023963 CGATCACGCAAGATCTAACTAGGA 60.024 45.833 12.06 0.00 41.74 2.94
4272 4576 5.335269 CGATCACGCAAGATCTAACTAGGAT 60.335 44.000 12.06 0.00 41.74 3.24
4273 4577 6.128254 CGATCACGCAAGATCTAACTAGGATA 60.128 42.308 12.06 0.00 41.74 2.59
4274 4578 7.414651 CGATCACGCAAGATCTAACTAGGATAT 60.415 40.741 12.06 0.00 41.74 1.63
4275 4579 6.914259 TCACGCAAGATCTAACTAGGATATG 58.086 40.000 0.00 0.00 43.62 1.78
4276 4580 5.574830 CACGCAAGATCTAACTAGGATATGC 59.425 44.000 0.00 0.00 43.62 3.14
4277 4581 5.243954 ACGCAAGATCTAACTAGGATATGCA 59.756 40.000 0.00 0.00 43.62 3.96
4278 4582 6.071108 ACGCAAGATCTAACTAGGATATGCAT 60.071 38.462 3.79 3.79 43.62 3.96
4279 4583 7.122799 ACGCAAGATCTAACTAGGATATGCATA 59.877 37.037 9.27 9.27 43.62 3.14
4280 4584 7.647318 CGCAAGATCTAACTAGGATATGCATAG 59.353 40.741 12.79 2.06 36.64 2.23
4281 4585 7.437862 GCAAGATCTAACTAGGATATGCATAGC 59.562 40.741 13.62 13.62 36.73 2.97
4282 4586 8.473219 CAAGATCTAACTAGGATATGCATAGCA 58.527 37.037 22.52 3.19 44.86 3.49
4283 4587 8.601047 AGATCTAACTAGGATATGCATAGCAA 57.399 34.615 22.52 9.75 43.62 3.91
4284 4588 8.474025 AGATCTAACTAGGATATGCATAGCAAC 58.526 37.037 22.52 7.17 43.62 4.17
4285 4589 6.621613 TCTAACTAGGATATGCATAGCAACG 58.378 40.000 22.52 12.02 43.62 4.10
4286 4590 5.468540 AACTAGGATATGCATAGCAACGA 57.531 39.130 22.52 3.02 43.62 3.85
4287 4591 5.065704 ACTAGGATATGCATAGCAACGAG 57.934 43.478 22.52 13.72 43.62 4.18
4288 4592 4.767409 ACTAGGATATGCATAGCAACGAGA 59.233 41.667 22.52 1.30 43.62 4.04
4289 4593 4.185467 AGGATATGCATAGCAACGAGAG 57.815 45.455 22.52 0.00 43.62 3.20
4290 4594 3.056250 AGGATATGCATAGCAACGAGAGG 60.056 47.826 22.52 0.00 43.62 3.69
4291 4595 2.820059 TATGCATAGCAACGAGAGGG 57.180 50.000 1.16 0.00 43.62 4.30
4292 4596 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
4293 4597 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
4294 4598 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
4295 4599 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
4296 4600 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
4297 4601 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
4298 4602 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
4299 4603 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
4300 4604 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
4301 4605 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
4302 4606 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
4303 4607 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
4304 4608 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
4305 4609 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
4306 4610 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
4307 4611 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
4308 4612 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
4309 4613 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
4310 4614 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
4311 4615 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
4312 4616 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
4313 4617 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
4314 4618 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
4315 4619 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
4316 4620 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
4317 4621 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
4318 4622 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
4319 4623 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
4320 4624 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
4321 4625 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
4322 4626 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
4323 4627 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
4324 4628 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
4325 4629 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
4326 4630 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
4327 4631 0.896940 ACCCTCGTAGACCGAAAGCA 60.897 55.000 0.00 0.00 46.75 3.91
4328 4632 0.245539 CCCTCGTAGACCGAAAGCAA 59.754 55.000 0.00 0.00 46.75 3.91
4329 4633 1.337447 CCCTCGTAGACCGAAAGCAAA 60.337 52.381 0.00 0.00 46.75 3.68
4330 4634 2.409975 CCTCGTAGACCGAAAGCAAAA 58.590 47.619 0.00 0.00 46.75 2.44
4331 4635 3.000727 CCTCGTAGACCGAAAGCAAAAT 58.999 45.455 0.00 0.00 46.75 1.82
4332 4636 3.062234 CCTCGTAGACCGAAAGCAAAATC 59.938 47.826 0.00 0.00 46.75 2.17
4333 4637 3.655486 TCGTAGACCGAAAGCAAAATCA 58.345 40.909 0.00 0.00 44.03 2.57
4334 4638 4.250464 TCGTAGACCGAAAGCAAAATCAT 58.750 39.130 0.00 0.00 44.03 2.45
4335 4639 4.693566 TCGTAGACCGAAAGCAAAATCATT 59.306 37.500 0.00 0.00 44.03 2.57
4336 4640 5.180492 TCGTAGACCGAAAGCAAAATCATTT 59.820 36.000 0.00 0.00 44.03 2.32
4337 4641 6.369340 TCGTAGACCGAAAGCAAAATCATTTA 59.631 34.615 0.00 0.00 44.03 1.40
4338 4642 6.682863 CGTAGACCGAAAGCAAAATCATTTAG 59.317 38.462 0.00 0.00 39.56 1.85
4339 4643 6.575162 AGACCGAAAGCAAAATCATTTAGT 57.425 33.333 0.00 0.00 0.00 2.24
4340 4644 7.681939 AGACCGAAAGCAAAATCATTTAGTA 57.318 32.000 0.00 0.00 0.00 1.82
4341 4645 8.106247 AGACCGAAAGCAAAATCATTTAGTAA 57.894 30.769 0.00 0.00 0.00 2.24
4342 4646 8.021396 AGACCGAAAGCAAAATCATTTAGTAAC 58.979 33.333 0.00 0.00 0.00 2.50
4343 4647 6.799925 ACCGAAAGCAAAATCATTTAGTAACG 59.200 34.615 0.00 0.00 0.00 3.18
4344 4648 6.237201 CCGAAAGCAAAATCATTTAGTAACGC 60.237 38.462 0.00 0.00 0.00 4.84
4345 4649 6.502644 CGAAAGCAAAATCATTTAGTAACGCG 60.503 38.462 3.53 3.53 0.00 6.01
4346 4650 4.658071 AGCAAAATCATTTAGTAACGCGG 58.342 39.130 12.47 0.00 0.00 6.46
4347 4651 4.155280 AGCAAAATCATTTAGTAACGCGGT 59.845 37.500 12.47 6.42 0.00 5.68
4348 4652 4.854839 GCAAAATCATTTAGTAACGCGGTT 59.145 37.500 12.47 5.03 0.00 4.44
4349 4653 5.219951 GCAAAATCATTTAGTAACGCGGTTG 60.220 40.000 12.47 0.00 0.00 3.77
4350 4654 5.866335 AAATCATTTAGTAACGCGGTTGA 57.134 34.783 12.47 3.15 0.00 3.18
4351 4655 6.431198 AAATCATTTAGTAACGCGGTTGAT 57.569 33.333 12.47 5.92 0.00 2.57
4352 4656 4.850859 TCATTTAGTAACGCGGTTGATG 57.149 40.909 12.47 4.86 0.00 3.07
4353 4657 4.247258 TCATTTAGTAACGCGGTTGATGT 58.753 39.130 12.47 0.00 0.00 3.06
4354 4658 5.409211 TCATTTAGTAACGCGGTTGATGTA 58.591 37.500 12.47 0.00 0.00 2.29
4355 4659 5.517411 TCATTTAGTAACGCGGTTGATGTAG 59.483 40.000 12.47 0.00 0.00 2.74
4356 4660 4.439305 TTAGTAACGCGGTTGATGTAGT 57.561 40.909 12.47 0.00 0.00 2.73
4357 4661 2.872370 AGTAACGCGGTTGATGTAGTC 58.128 47.619 12.47 0.00 0.00 2.59
4358 4662 1.580704 GTAACGCGGTTGATGTAGTCG 59.419 52.381 12.47 0.00 0.00 4.18
4359 4663 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
4360 4664 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
4361 4665 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
4363 4667 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
4364 4668 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
4365 4669 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
4366 4670 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
4367 4671 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
4368 4672 4.224433 GTTGATGTAGTCGAACGTCTTCA 58.776 43.478 10.09 1.94 36.53 3.02
4369 4673 3.818387 TGATGTAGTCGAACGTCTTCAC 58.182 45.455 10.09 0.00 36.53 3.18
4380 4684 3.927555 GTCTTCACGATCCAACCCA 57.072 52.632 0.00 0.00 0.00 4.51
4381 4685 2.403252 GTCTTCACGATCCAACCCAT 57.597 50.000 0.00 0.00 0.00 4.00
4382 4686 2.280628 GTCTTCACGATCCAACCCATC 58.719 52.381 0.00 0.00 0.00 3.51
4383 4687 1.209504 TCTTCACGATCCAACCCATCC 59.790 52.381 0.00 0.00 0.00 3.51
4384 4688 0.988063 TTCACGATCCAACCCATCCA 59.012 50.000 0.00 0.00 0.00 3.41
4385 4689 0.988063 TCACGATCCAACCCATCCAA 59.012 50.000 0.00 0.00 0.00 3.53
4386 4690 1.065491 TCACGATCCAACCCATCCAAG 60.065 52.381 0.00 0.00 0.00 3.61
4387 4691 0.991920 ACGATCCAACCCATCCAAGT 59.008 50.000 0.00 0.00 0.00 3.16
4388 4692 2.093181 CACGATCCAACCCATCCAAGTA 60.093 50.000 0.00 0.00 0.00 2.24
4389 4693 2.093128 ACGATCCAACCCATCCAAGTAC 60.093 50.000 0.00 0.00 0.00 2.73
4390 4694 2.745152 CGATCCAACCCATCCAAGTACC 60.745 54.545 0.00 0.00 0.00 3.34
4391 4695 0.616371 TCCAACCCATCCAAGTACCG 59.384 55.000 0.00 0.00 0.00 4.02
4392 4696 0.616371 CCAACCCATCCAAGTACCGA 59.384 55.000 0.00 0.00 0.00 4.69
4393 4697 1.003812 CCAACCCATCCAAGTACCGAA 59.996 52.381 0.00 0.00 0.00 4.30
4394 4698 2.081462 CAACCCATCCAAGTACCGAAC 58.919 52.381 0.00 0.00 0.00 3.95
4395 4699 0.248289 ACCCATCCAAGTACCGAACG 59.752 55.000 0.00 0.00 0.00 3.95
4396 4700 0.248289 CCCATCCAAGTACCGAACGT 59.752 55.000 0.00 0.00 0.00 3.99
4397 4701 1.477700 CCCATCCAAGTACCGAACGTA 59.522 52.381 0.00 0.00 0.00 3.57
4398 4702 2.094078 CCCATCCAAGTACCGAACGTAA 60.094 50.000 0.00 0.00 0.00 3.18
4400 4704 3.119388 CCATCCAAGTACCGAACGTAAGA 60.119 47.826 0.00 0.00 43.62 2.10
4401 4705 3.559238 TCCAAGTACCGAACGTAAGAC 57.441 47.619 0.00 0.00 43.62 3.01
4402 4706 2.884012 TCCAAGTACCGAACGTAAGACA 59.116 45.455 0.00 0.00 43.62 3.41
4403 4707 2.982470 CCAAGTACCGAACGTAAGACAC 59.018 50.000 0.00 0.00 43.62 3.67
4404 4708 2.982470 CAAGTACCGAACGTAAGACACC 59.018 50.000 0.00 0.00 43.62 4.16
4405 4709 2.508526 AGTACCGAACGTAAGACACCT 58.491 47.619 0.00 0.00 43.62 4.00
4406 4710 2.485814 AGTACCGAACGTAAGACACCTC 59.514 50.000 0.00 0.00 43.62 3.85
4407 4711 0.600057 ACCGAACGTAAGACACCTCC 59.400 55.000 0.00 0.00 43.62 4.30
4408 4712 0.455633 CCGAACGTAAGACACCTCCG 60.456 60.000 0.00 0.00 43.62 4.63
4409 4713 0.239347 CGAACGTAAGACACCTCCGT 59.761 55.000 0.00 0.00 43.62 4.69
4410 4714 1.694639 GAACGTAAGACACCTCCGTG 58.305 55.000 0.00 0.00 43.51 4.94
4426 4730 3.721466 GTGTTTAGCACACGTTCCG 57.279 52.632 0.00 0.00 46.51 4.30
4427 4731 0.383860 GTGTTTAGCACACGTTCCGC 60.384 55.000 0.00 0.00 46.51 5.54
4428 4732 0.810426 TGTTTAGCACACGTTCCGCA 60.810 50.000 3.70 0.00 0.00 5.69
4429 4733 0.383860 GTTTAGCACACGTTCCGCAC 60.384 55.000 3.70 0.00 0.00 5.34
4447 4751 3.063084 GGTGACGTCCCTCGAGCT 61.063 66.667 14.12 0.00 42.86 4.09
4448 4752 2.486042 GTGACGTCCCTCGAGCTC 59.514 66.667 14.12 2.73 42.86 4.09
4449 4753 2.041686 GTGACGTCCCTCGAGCTCT 61.042 63.158 14.12 0.00 42.86 4.09
4450 4754 1.303398 TGACGTCCCTCGAGCTCTT 60.303 57.895 14.12 0.00 42.86 2.85
4451 4755 1.137825 GACGTCCCTCGAGCTCTTG 59.862 63.158 12.85 3.99 42.86 3.02
4452 4756 1.303398 ACGTCCCTCGAGCTCTTGA 60.303 57.895 12.85 1.33 42.86 3.02
4453 4757 0.681564 ACGTCCCTCGAGCTCTTGAT 60.682 55.000 12.85 0.00 42.86 2.57
4454 4758 0.030101 CGTCCCTCGAGCTCTTGATC 59.970 60.000 12.85 0.00 42.86 2.92
4455 4759 0.387565 GTCCCTCGAGCTCTTGATCC 59.612 60.000 12.85 0.00 0.00 3.36
4456 4760 0.033109 TCCCTCGAGCTCTTGATCCA 60.033 55.000 12.85 0.00 0.00 3.41
4457 4761 0.388659 CCCTCGAGCTCTTGATCCAG 59.611 60.000 12.85 0.00 0.00 3.86
4458 4762 1.110442 CCTCGAGCTCTTGATCCAGT 58.890 55.000 12.85 0.00 0.00 4.00
4459 4763 1.480137 CCTCGAGCTCTTGATCCAGTT 59.520 52.381 12.85 0.00 0.00 3.16
4460 4764 2.690497 CCTCGAGCTCTTGATCCAGTTA 59.310 50.000 12.85 0.00 0.00 2.24
4461 4765 3.131223 CCTCGAGCTCTTGATCCAGTTAA 59.869 47.826 12.85 0.00 0.00 2.01
4462 4766 4.358851 CTCGAGCTCTTGATCCAGTTAAG 58.641 47.826 12.85 0.00 0.00 1.85
4463 4767 3.131223 TCGAGCTCTTGATCCAGTTAAGG 59.869 47.826 12.85 0.00 0.00 2.69
4464 4768 3.131223 CGAGCTCTTGATCCAGTTAAGGA 59.869 47.826 12.85 0.00 43.01 3.36
4465 4769 4.438148 GAGCTCTTGATCCAGTTAAGGAC 58.562 47.826 6.43 0.00 41.30 3.85
4466 4770 3.840666 AGCTCTTGATCCAGTTAAGGACA 59.159 43.478 0.00 0.00 41.30 4.02
4467 4771 4.287067 AGCTCTTGATCCAGTTAAGGACAA 59.713 41.667 0.00 0.00 41.30 3.18
4468 4772 4.633565 GCTCTTGATCCAGTTAAGGACAAG 59.366 45.833 13.96 13.96 42.13 3.16
4469 4773 5.165961 TCTTGATCCAGTTAAGGACAAGG 57.834 43.478 17.23 0.00 41.67 3.61
4470 4774 4.019321 TCTTGATCCAGTTAAGGACAAGGG 60.019 45.833 17.23 0.00 41.67 3.95
4471 4775 3.526899 TGATCCAGTTAAGGACAAGGGA 58.473 45.455 0.00 0.00 41.30 4.20
4472 4776 3.519510 TGATCCAGTTAAGGACAAGGGAG 59.480 47.826 0.00 0.00 41.30 4.30
4473 4777 3.269592 TCCAGTTAAGGACAAGGGAGA 57.730 47.619 0.00 0.00 31.23 3.71
4474 4778 3.173965 TCCAGTTAAGGACAAGGGAGAG 58.826 50.000 0.00 0.00 31.23 3.20
4475 4779 2.907042 CCAGTTAAGGACAAGGGAGAGT 59.093 50.000 0.00 0.00 0.00 3.24
4476 4780 3.328050 CCAGTTAAGGACAAGGGAGAGTT 59.672 47.826 0.00 0.00 0.00 3.01
4477 4781 4.563786 CCAGTTAAGGACAAGGGAGAGTTC 60.564 50.000 0.00 0.00 0.00 3.01
4478 4782 3.583526 AGTTAAGGACAAGGGAGAGTTCC 59.416 47.826 0.00 0.00 43.23 3.62
4479 4783 0.977395 AAGGACAAGGGAGAGTTCCG 59.023 55.000 0.00 0.00 45.04 4.30
4480 4784 0.178929 AGGACAAGGGAGAGTTCCGT 60.179 55.000 0.00 0.00 45.04 4.69
4481 4785 0.246910 GGACAAGGGAGAGTTCCGTC 59.753 60.000 0.00 0.00 45.04 4.79
4482 4786 0.966920 GACAAGGGAGAGTTCCGTCA 59.033 55.000 0.00 0.00 45.04 4.35
4483 4787 0.969894 ACAAGGGAGAGTTCCGTCAG 59.030 55.000 0.00 0.00 45.04 3.51
4484 4788 0.390472 CAAGGGAGAGTTCCGTCAGC 60.390 60.000 0.00 0.00 45.04 4.26
4485 4789 0.832135 AAGGGAGAGTTCCGTCAGCA 60.832 55.000 0.00 0.00 45.04 4.41
4486 4790 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
4487 4791 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
4513 4817 3.663464 GTGGTGACGATGTTGATGATG 57.337 47.619 0.00 0.00 0.00 3.07
4514 4818 3.002791 GTGGTGACGATGTTGATGATGT 58.997 45.455 0.00 0.00 0.00 3.06
4515 4819 3.002102 TGGTGACGATGTTGATGATGTG 58.998 45.455 0.00 0.00 0.00 3.21
4516 4820 3.261580 GGTGACGATGTTGATGATGTGA 58.738 45.455 0.00 0.00 0.00 3.58
4517 4821 3.873361 GGTGACGATGTTGATGATGTGAT 59.127 43.478 0.00 0.00 0.00 3.06
4518 4822 4.025396 GGTGACGATGTTGATGATGTGATC 60.025 45.833 0.00 0.00 0.00 2.92
4519 4823 4.025396 GTGACGATGTTGATGATGTGATCC 60.025 45.833 0.00 0.00 0.00 3.36
4520 4824 3.126073 ACGATGTTGATGATGTGATCCG 58.874 45.455 0.00 0.00 0.00 4.18
4521 4825 2.096565 CGATGTTGATGATGTGATCCGC 60.097 50.000 0.00 0.00 0.00 5.54
4522 4826 1.289276 TGTTGATGATGTGATCCGCG 58.711 50.000 0.00 0.00 0.00 6.46
4523 4827 0.041839 GTTGATGATGTGATCCGCGC 60.042 55.000 0.00 0.00 0.00 6.86
4524 4828 0.461693 TTGATGATGTGATCCGCGCA 60.462 50.000 8.75 0.00 42.01 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.391661 TGGATCAAGGAAGCTGCGTC 60.392 55.000 7.05 7.05 0.00 5.19
27 28 2.164624 CAGTCAGGAAGAAGGGACTACG 59.835 54.545 0.00 0.00 38.49 3.51
48 49 5.917462 AGCTGTTGATTAATTATTTGGGGC 58.083 37.500 0.00 0.00 0.00 5.80
49 50 6.208644 CGAGCTGTTGATTAATTATTTGGGG 58.791 40.000 0.00 0.00 0.00 4.96
52 53 6.912591 GGTCCGAGCTGTTGATTAATTATTTG 59.087 38.462 0.00 0.00 0.00 2.32
57 58 3.279434 GGGTCCGAGCTGTTGATTAATT 58.721 45.455 0.00 0.00 0.00 1.40
79 80 0.744414 ATGTGTAGTGATGCACGGCC 60.744 55.000 0.00 0.00 39.64 6.13
121 122 1.831106 TCCACTGACACAACACAGAGT 59.169 47.619 0.00 0.00 37.54 3.24
187 189 2.281762 CGCTTCGGCAGTATACAAGTTC 59.718 50.000 5.50 0.00 41.88 3.01
193 196 2.205307 ACTTCGCTTCGGCAGTATAC 57.795 50.000 0.00 0.00 41.88 1.47
201 204 1.333791 GGTCAACAAACTTCGCTTCGG 60.334 52.381 0.00 0.00 0.00 4.30
210 213 2.943033 GCACACTAGTGGTCAACAAACT 59.057 45.455 26.12 0.00 45.98 2.66
227 230 4.777384 CAGTAGTGTGGCTGCACA 57.223 55.556 13.42 1.20 41.52 4.57
233 236 3.121030 CCGCAGCAGTAGTGTGGC 61.121 66.667 0.00 2.73 38.69 5.01
235 238 0.723414 CATTCCGCAGCAGTAGTGTG 59.277 55.000 0.00 0.00 0.00 3.82
236 239 0.391661 CCATTCCGCAGCAGTAGTGT 60.392 55.000 0.00 0.00 0.00 3.55
241 244 3.058160 GCACCATTCCGCAGCAGT 61.058 61.111 0.00 0.00 0.00 4.40
245 248 1.131126 CTTAACAGCACCATTCCGCAG 59.869 52.381 0.00 0.00 0.00 5.18
248 251 3.996825 GCTTAACAGCACCATTCCG 57.003 52.632 0.00 0.00 46.49 4.30
260 263 0.859882 GCGATTAGGCGAGGCTTAAC 59.140 55.000 4.08 0.00 33.22 2.01
270 273 0.582005 CCTAAACTGCGCGATTAGGC 59.418 55.000 23.91 0.00 40.07 3.93
280 283 3.617263 CACATAGTTCGACCCTAAACTGC 59.383 47.826 0.00 0.00 36.44 4.40
283 286 2.601763 CGCACATAGTTCGACCCTAAAC 59.398 50.000 0.00 0.00 0.00 2.01
289 292 0.870307 ATCGCGCACATAGTTCGACC 60.870 55.000 8.75 0.00 31.74 4.79
304 307 6.437928 TGATTTATTTGTATGCCTTCATCGC 58.562 36.000 0.00 0.00 34.22 4.58
305 308 8.077991 ACATGATTTATTTGTATGCCTTCATCG 58.922 33.333 0.00 0.00 34.22 3.84
352 356 6.894339 TCGTGCCTGATAGATTAGTTATCA 57.106 37.500 0.00 0.00 36.42 2.15
363 367 6.980978 TCTCTTTTCTAAATCGTGCCTGATAG 59.019 38.462 0.00 0.00 0.00 2.08
368 372 3.935828 GCTCTCTTTTCTAAATCGTGCCT 59.064 43.478 0.00 0.00 0.00 4.75
402 416 0.742990 GCCCGTTGGATGATCGAACA 60.743 55.000 18.17 0.00 35.24 3.18
403 417 0.742990 TGCCCGTTGGATGATCGAAC 60.743 55.000 9.87 9.87 32.71 3.95
418 432 1.352083 TAGTATGAGCTCCCATGCCC 58.648 55.000 12.15 0.00 30.81 5.36
464 478 1.053424 TTCCATATGTCCCGCCCTAC 58.947 55.000 1.24 0.00 0.00 3.18
477 491 6.704493 GTCTTATGCGTCCACTTATTTCCATA 59.296 38.462 0.00 0.00 0.00 2.74
480 494 4.025979 CGTCTTATGCGTCCACTTATTTCC 60.026 45.833 0.00 0.00 0.00 3.13
488 502 0.457035 TACCCGTCTTATGCGTCCAC 59.543 55.000 0.00 0.00 0.00 4.02
500 514 1.997606 CGGAAGACATTGTTACCCGTC 59.002 52.381 13.17 0.00 0.00 4.79
502 516 2.088950 ACGGAAGACATTGTTACCCG 57.911 50.000 17.31 17.31 41.04 5.28
505 519 4.273969 TGTTCCAACGGAAGACATTGTTAC 59.726 41.667 0.00 0.00 42.88 2.50
506 520 4.452825 TGTTCCAACGGAAGACATTGTTA 58.547 39.130 0.00 0.00 42.88 2.41
517 531 0.464554 TGCATGTGTGTTCCAACGGA 60.465 50.000 0.00 0.00 0.00 4.69
523 537 4.503741 AGTACAAATGCATGTGTGTTCC 57.496 40.909 29.21 15.32 34.75 3.62
524 538 7.974675 ACTATAGTACAAATGCATGTGTGTTC 58.025 34.615 29.21 19.12 34.75 3.18
584 612 1.792006 CTAAGGGCAACGAACGAACT 58.208 50.000 0.14 0.00 37.60 3.01
626 654 5.191059 CGCAGCGAAAGAAATAGTACATTC 58.809 41.667 9.98 0.00 0.00 2.67
632 660 1.369625 CCCGCAGCGAAAGAAATAGT 58.630 50.000 18.75 0.00 0.00 2.12
633 661 0.657840 CCCCGCAGCGAAAGAAATAG 59.342 55.000 18.75 0.00 0.00 1.73
634 662 0.746563 CCCCCGCAGCGAAAGAAATA 60.747 55.000 18.75 0.00 0.00 1.40
635 663 2.046285 CCCCCGCAGCGAAAGAAAT 61.046 57.895 18.75 0.00 0.00 2.17
668 696 5.707242 TGACAGGTGAGAGTTACTTGTAG 57.293 43.478 0.00 0.00 38.30 2.74
716 744 3.057174 TGGGTACAGCGCCTTTAATTTTG 60.057 43.478 2.29 0.00 0.00 2.44
764 792 7.345943 CGTTTTAGACTCTTTTGGTCTCTTTC 58.654 38.462 0.00 0.00 42.26 2.62
799 827 3.365832 GCATCTTTGTGATATTGCGTGG 58.634 45.455 0.00 0.00 33.36 4.94
829 857 1.213799 TGCAGCGCAGTCTAGTCTG 59.786 57.895 11.47 12.07 38.35 3.51
830 858 3.686760 TGCAGCGCAGTCTAGTCT 58.313 55.556 11.47 0.00 33.32 3.24
1057 1094 2.433604 CCATGGCTCACTATCACTCACT 59.566 50.000 0.00 0.00 0.00 3.41
1058 1095 2.831333 CCATGGCTCACTATCACTCAC 58.169 52.381 0.00 0.00 0.00 3.51
1059 1096 1.139654 GCCATGGCTCACTATCACTCA 59.860 52.381 29.98 0.00 38.26 3.41
1060 1097 1.871408 CGCCATGGCTCACTATCACTC 60.871 57.143 33.07 0.98 39.32 3.51
1263 1300 1.901464 GGTGGGGCGCTTGAAGAAA 60.901 57.895 7.64 0.00 0.00 2.52
1339 1376 6.090898 CGCCATATTTACAGCTTACATAGACC 59.909 42.308 0.00 0.00 0.00 3.85
1358 1395 1.301637 CATCATGTCGGCCGCCATA 60.302 57.895 22.86 10.81 0.00 2.74
1402 1439 3.705638 CTCGGCTGCACACACACG 61.706 66.667 0.50 0.00 0.00 4.49
1517 1554 0.462759 GCCGATGGACTGGAAGAAGG 60.463 60.000 0.00 0.00 37.43 3.46
1635 1672 0.247736 CGAACAGGGACTTGGAGAGG 59.752 60.000 0.00 0.00 34.60 3.69
1707 1744 2.815211 CTCACGTCGGCCATGGTG 60.815 66.667 14.67 7.16 0.00 4.17
1780 1817 1.061546 GGTGGTGGACAAAGTAGGGA 58.938 55.000 0.00 0.00 0.00 4.20
1802 1839 0.105039 GAGCCGGTGAGATTAGTGGG 59.895 60.000 1.90 0.00 0.00 4.61
1856 1912 4.966965 ACGTCCAAATTAACACACACAA 57.033 36.364 0.00 0.00 0.00 3.33
2173 2229 4.597079 GTTTTGAAGACGAAACTGCATCA 58.403 39.130 0.00 0.00 43.32 3.07
2238 2365 9.116067 CGTGGGAAGATTTTTAAACATATAGGA 57.884 33.333 0.00 0.00 0.00 2.94
2239 2366 8.349983 CCGTGGGAAGATTTTTAAACATATAGG 58.650 37.037 0.00 0.00 0.00 2.57
2240 2367 7.860872 GCCGTGGGAAGATTTTTAAACATATAG 59.139 37.037 0.00 0.00 0.00 1.31
2241 2368 7.467539 CGCCGTGGGAAGATTTTTAAACATATA 60.468 37.037 0.00 0.00 0.00 0.86
2242 2369 6.569780 GCCGTGGGAAGATTTTTAAACATAT 58.430 36.000 0.00 0.00 0.00 1.78
2254 2381 2.114670 CAATGCGCCGTGGGAAGAT 61.115 57.895 4.18 0.00 0.00 2.40
2256 2383 2.625823 AACAATGCGCCGTGGGAAG 61.626 57.895 4.18 0.00 0.00 3.46
2266 2397 5.575218 TCACATGTAGTAGTACAACAATGCG 59.425 40.000 14.26 3.17 42.54 4.73
2339 2470 4.704833 TTGCTGCTCCGGACAGGC 62.705 66.667 25.52 18.27 40.77 4.85
2363 2494 3.617263 CCTACTTCACATGTAAAGACGGC 59.383 47.826 15.91 0.00 0.00 5.68
2402 2533 4.150804 GTGATCACCGAAACTTCAACTCTC 59.849 45.833 15.31 0.00 0.00 3.20
2478 2609 1.872234 CATGAGCGTGCTTGCATGC 60.872 57.895 26.59 26.59 37.31 4.06
2485 2616 2.503061 CTAGGCCATGAGCGTGCT 59.497 61.111 5.01 0.00 45.17 4.40
2530 2668 8.729756 TGTGACTCAACTTTGGATAAATGTATG 58.270 33.333 0.00 0.00 0.00 2.39
2531 2669 8.862325 TGTGACTCAACTTTGGATAAATGTAT 57.138 30.769 0.00 0.00 0.00 2.29
2532 2670 8.862325 ATGTGACTCAACTTTGGATAAATGTA 57.138 30.769 0.00 0.00 0.00 2.29
2533 2671 7.765695 ATGTGACTCAACTTTGGATAAATGT 57.234 32.000 0.00 0.00 0.00 2.71
2557 2695 3.462982 TCTACGTCAAAGAAAGCAGCAA 58.537 40.909 0.00 0.00 0.00 3.91
2559 2697 3.318017 TCTCTACGTCAAAGAAAGCAGC 58.682 45.455 0.00 0.00 0.00 5.25
2588 2726 2.821366 GCGTGCATGCACCTAGCT 60.821 61.111 37.92 0.00 45.94 3.32
2589 2727 3.126879 TGCGTGCATGCACCTAGC 61.127 61.111 37.92 33.87 43.49 3.42
2595 2733 0.456482 GCTTATTGTGCGTGCATGCA 60.456 50.000 29.30 29.30 43.95 3.96
2597 2735 2.267188 AAGCTTATTGTGCGTGCATG 57.733 45.000 0.00 0.09 35.28 4.06
2598 2736 2.598589 CAAAGCTTATTGTGCGTGCAT 58.401 42.857 0.00 0.00 35.28 3.96
2603 2741 2.987413 TGTCCAAAGCTTATTGTGCG 57.013 45.000 0.00 0.00 35.28 5.34
2621 2759 5.936956 GCTAAGAATCCAGGAGACCATATTG 59.063 44.000 0.00 0.00 0.00 1.90
2672 2810 3.699538 AGCATATACAACTCGACCACTGA 59.300 43.478 0.00 0.00 0.00 3.41
2673 2811 4.045104 GAGCATATACAACTCGACCACTG 58.955 47.826 0.00 0.00 0.00 3.66
2674 2812 3.954904 AGAGCATATACAACTCGACCACT 59.045 43.478 0.00 0.00 35.56 4.00
2683 2821 3.821600 TCCCGAGAGAGAGCATATACAAC 59.178 47.826 0.00 0.00 0.00 3.32
2686 2824 2.750712 GGTCCCGAGAGAGAGCATATAC 59.249 54.545 0.00 0.00 0.00 1.47
2755 2893 1.533625 TGCATGCCAACTGGTTAGAC 58.466 50.000 16.68 0.00 37.57 2.59
2781 2923 5.243730 CGCCCTCATTTCATAATAATTGGGT 59.756 40.000 0.00 0.00 32.75 4.51
2843 3014 0.876399 GTCACATGCATGCACAGTGA 59.124 50.000 35.54 35.54 39.97 3.41
2933 3104 8.511604 AACATGGGCATGCTAGTATTATTATC 57.488 34.615 18.92 0.00 42.39 1.75
2993 3164 4.590850 TGACCATGAGGAGACGATTATG 57.409 45.455 0.00 0.00 38.69 1.90
3017 3188 0.319297 AGACCGCTTTGTCACGTACC 60.319 55.000 0.00 0.00 37.73 3.34
3018 3189 0.782384 CAGACCGCTTTGTCACGTAC 59.218 55.000 0.00 0.00 37.73 3.67
3120 3307 0.817634 TGAGGCCTGAAAACCACACG 60.818 55.000 12.00 0.00 0.00 4.49
3235 3422 2.508663 GTAGTTCTGCGGGTCGGC 60.509 66.667 0.00 0.00 0.00 5.54
3389 3579 7.752239 AGAAAACGCATCATCAAGTCAATAAAG 59.248 33.333 0.00 0.00 0.00 1.85
3403 3593 3.814842 ACACTTGATCAGAAAACGCATCA 59.185 39.130 0.00 0.00 0.00 3.07
3404 3594 4.153986 CACACTTGATCAGAAAACGCATC 58.846 43.478 0.00 0.00 0.00 3.91
3405 3595 3.058016 CCACACTTGATCAGAAAACGCAT 60.058 43.478 0.00 0.00 0.00 4.73
3435 3625 1.394572 CACACACATGACGCATCGATT 59.605 47.619 0.00 0.00 0.00 3.34
3580 3779 9.774742 GCTATTTCCTCAGTTTACAGTTAAATG 57.225 33.333 0.45 0.45 29.82 2.32
3581 3780 9.740710 AGCTATTTCCTCAGTTTACAGTTAAAT 57.259 29.630 0.00 0.00 29.82 1.40
3585 3784 6.369065 CGAAGCTATTTCCTCAGTTTACAGTT 59.631 38.462 0.00 0.00 31.82 3.16
3604 3803 0.980231 AATCAGAGGGGCTCGAAGCT 60.980 55.000 6.78 0.00 41.99 3.74
3617 3817 8.146053 TCATTCCCTCAGTTTAGTTAATCAGA 57.854 34.615 0.00 0.00 0.00 3.27
3637 3837 5.352569 AGTGATGACCTCGTTGAATTCATTC 59.647 40.000 9.40 5.13 37.31 2.67
3660 3860 3.420893 TGACCAAACATAGCAAGGGAAG 58.579 45.455 0.00 0.00 0.00 3.46
3677 3877 1.197721 CATTGTCAAGCGGAACTGACC 59.802 52.381 0.12 0.00 0.00 4.02
3680 3880 3.837213 AATCATTGTCAAGCGGAACTG 57.163 42.857 0.00 0.00 0.00 3.16
3693 3893 5.005971 GCGGAATCAATCACCAAAATCATTG 59.994 40.000 0.00 0.00 0.00 2.82
3694 3894 5.111293 GCGGAATCAATCACCAAAATCATT 58.889 37.500 0.00 0.00 0.00 2.57
3695 3895 4.160065 TGCGGAATCAATCACCAAAATCAT 59.840 37.500 0.00 0.00 0.00 2.45
3720 3920 4.274069 CGAACGTCATAGCAAATGGATTG 58.726 43.478 0.00 0.00 42.21 2.67
3746 3946 0.463654 TGGCGGATGAAGGAAATCGG 60.464 55.000 0.00 0.00 0.00 4.18
3779 3979 1.067071 TGATTCGCAAATGCATGCCAA 60.067 42.857 16.68 0.00 43.47 4.52
3790 3990 4.522114 TCCAACCATAGATTGATTCGCAA 58.478 39.130 0.00 0.00 41.53 4.85
3797 3997 7.206789 TCCTAAACATCCAACCATAGATTGA 57.793 36.000 0.00 0.00 0.00 2.57
3804 4004 3.591527 TGTCCTCCTAAACATCCAACCAT 59.408 43.478 0.00 0.00 0.00 3.55
3814 4014 4.403585 GGATACCACTGTCCTCCTAAAC 57.596 50.000 0.00 0.00 0.00 2.01
3839 4039 5.046950 GTCTAGAACTTCAACTCTGATGGGT 60.047 44.000 0.00 0.00 32.31 4.51
3868 4068 5.888691 TTAGAAAAATGCGAGCACCAATA 57.111 34.783 0.00 0.00 0.00 1.90
3902 4102 5.050091 CACTGAAAGCACATCGTTAGAAAGT 60.050 40.000 0.00 0.00 37.60 2.66
3904 4104 5.053811 TCACTGAAAGCACATCGTTAGAAA 58.946 37.500 0.00 0.00 37.60 2.52
3909 4109 3.003689 CCTTTCACTGAAAGCACATCGTT 59.996 43.478 21.67 0.00 45.19 3.85
3923 4123 3.802685 CGACGAAAAAGTCTCCTTTCACT 59.197 43.478 0.00 0.00 40.01 3.41
3927 4127 4.056092 AGTCGACGAAAAAGTCTCCTTT 57.944 40.909 10.46 0.00 42.73 3.11
3928 4128 3.729862 AGTCGACGAAAAAGTCTCCTT 57.270 42.857 10.46 0.00 38.90 3.36
3967 4167 0.032130 TATCTTGAGATGGACGGCGC 59.968 55.000 6.90 0.00 36.05 6.53
3969 4169 3.496130 CACATTATCTTGAGATGGACGGC 59.504 47.826 3.79 0.00 36.05 5.68
3970 4170 4.697514 ACACATTATCTTGAGATGGACGG 58.302 43.478 3.79 0.00 36.05 4.79
4006 4206 4.168101 CCCTACCCCTATTAGCATCTTCA 58.832 47.826 0.00 0.00 0.00 3.02
4011 4211 1.276622 CGCCCTACCCCTATTAGCAT 58.723 55.000 0.00 0.00 0.00 3.79
4029 4233 0.993532 AACACACACACACACGTACG 59.006 50.000 15.01 15.01 0.00 3.67
4042 4246 9.378551 TCCATACACTCATCTTTATAAACACAC 57.621 33.333 0.00 0.00 0.00 3.82
4043 4247 9.378551 GTCCATACACTCATCTTTATAAACACA 57.621 33.333 0.00 0.00 0.00 3.72
4044 4248 9.378551 TGTCCATACACTCATCTTTATAAACAC 57.621 33.333 0.00 0.00 0.00 3.32
4045 4249 9.952030 TTGTCCATACACTCATCTTTATAAACA 57.048 29.630 0.00 0.00 34.61 2.83
4048 4252 9.093970 CGTTTGTCCATACACTCATCTTTATAA 57.906 33.333 0.00 0.00 34.61 0.98
4049 4253 8.471609 TCGTTTGTCCATACACTCATCTTTATA 58.528 33.333 0.00 0.00 34.61 0.98
4055 4259 4.495422 AGTCGTTTGTCCATACACTCATC 58.505 43.478 0.00 0.00 34.61 2.92
4056 4260 4.495422 GAGTCGTTTGTCCATACACTCAT 58.505 43.478 11.55 0.00 34.61 2.90
4067 4271 1.563111 TTGTCGTGGAGTCGTTTGTC 58.437 50.000 0.00 0.00 0.00 3.18
4068 4272 1.931172 CTTTGTCGTGGAGTCGTTTGT 59.069 47.619 0.00 0.00 0.00 2.83
4070 4274 2.304751 ACTTTGTCGTGGAGTCGTTT 57.695 45.000 0.00 0.00 0.00 3.60
4071 4275 2.304751 AACTTTGTCGTGGAGTCGTT 57.695 45.000 0.00 0.00 0.00 3.85
4073 4277 2.864343 AGAAAACTTTGTCGTGGAGTCG 59.136 45.455 0.00 0.00 0.00 4.18
4075 4279 3.181500 GCAAGAAAACTTTGTCGTGGAGT 60.181 43.478 0.00 0.00 0.00 3.85
4076 4280 3.065371 AGCAAGAAAACTTTGTCGTGGAG 59.935 43.478 0.00 0.00 0.00 3.86
4082 4381 3.609409 CGGCCTAGCAAGAAAACTTTGTC 60.609 47.826 0.00 0.00 0.00 3.18
4088 4387 1.244816 AACCGGCCTAGCAAGAAAAC 58.755 50.000 0.00 0.00 0.00 2.43
4095 4394 1.523154 CTGCAAAAACCGGCCTAGCA 61.523 55.000 0.00 5.07 0.00 3.49
4096 4395 1.212751 CTGCAAAAACCGGCCTAGC 59.787 57.895 0.00 0.00 0.00 3.42
4098 4397 2.272447 GCCTGCAAAAACCGGCCTA 61.272 57.895 0.00 0.00 36.56 3.93
4118 4417 4.285807 TCAAAGTGTTCCACGTGAAATG 57.714 40.909 19.30 0.00 39.64 2.32
4124 4423 5.715070 TGAAATTTTCAAAGTGTTCCACGT 58.285 33.333 9.36 0.00 36.71 4.49
4159 4458 2.941415 GCCTGGATTGGTCAACACCTAG 60.941 54.545 0.00 0.00 44.17 3.02
4166 4465 0.329261 CTGGAGCCTGGATTGGTCAA 59.671 55.000 0.00 0.00 0.00 3.18
4168 4467 0.107459 GACTGGAGCCTGGATTGGTC 60.107 60.000 0.00 0.00 0.00 4.02
4170 4469 1.225704 GGACTGGAGCCTGGATTGG 59.774 63.158 0.00 0.00 0.00 3.16
4171 4470 0.107312 CTGGACTGGAGCCTGGATTG 60.107 60.000 0.00 0.00 0.00 2.67
4172 4471 1.919600 GCTGGACTGGAGCCTGGATT 61.920 60.000 0.00 0.00 0.00 3.01
4173 4472 2.373707 GCTGGACTGGAGCCTGGAT 61.374 63.158 0.00 0.00 0.00 3.41
4174 4473 3.005539 GCTGGACTGGAGCCTGGA 61.006 66.667 0.00 0.00 0.00 3.86
4184 4488 1.462238 ACCCTTGACCAGCTGGACT 60.462 57.895 39.19 18.64 38.94 3.85
4211 4515 0.609662 TACTACGTTCCCCAACAGCC 59.390 55.000 0.00 0.00 32.14 4.85
4212 4516 1.274447 AGTACTACGTTCCCCAACAGC 59.726 52.381 0.00 0.00 32.14 4.40
4213 4517 3.672767 AAGTACTACGTTCCCCAACAG 57.327 47.619 0.00 0.00 32.14 3.16
4214 4518 5.543507 TTAAAGTACTACGTTCCCCAACA 57.456 39.130 0.00 0.00 32.14 3.33
4215 4519 6.859420 TTTTAAAGTACTACGTTCCCCAAC 57.141 37.500 0.00 0.00 0.00 3.77
4245 4549 5.244785 AGTTAGATCTTGCGTGATCGTAA 57.755 39.130 0.00 8.67 45.35 3.18
4246 4550 4.895224 AGTTAGATCTTGCGTGATCGTA 57.105 40.909 0.00 3.59 45.35 3.43
4247 4551 3.784701 AGTTAGATCTTGCGTGATCGT 57.215 42.857 0.00 5.18 45.35 3.73
4248 4552 4.023963 TCCTAGTTAGATCTTGCGTGATCG 60.024 45.833 0.00 0.00 45.35 3.69
4249 4553 5.440234 TCCTAGTTAGATCTTGCGTGATC 57.560 43.478 0.00 9.82 42.18 2.92
4250 4554 7.542890 CATATCCTAGTTAGATCTTGCGTGAT 58.457 38.462 0.00 0.00 0.00 3.06
4251 4555 6.570571 GCATATCCTAGTTAGATCTTGCGTGA 60.571 42.308 0.00 0.00 0.00 4.35
4252 4556 5.574830 GCATATCCTAGTTAGATCTTGCGTG 59.425 44.000 0.00 0.00 0.00 5.34
4253 4557 5.243954 TGCATATCCTAGTTAGATCTTGCGT 59.756 40.000 0.00 0.00 36.51 5.24
4254 4558 5.714047 TGCATATCCTAGTTAGATCTTGCG 58.286 41.667 0.00 0.00 36.51 4.85
4255 4559 7.437862 GCTATGCATATCCTAGTTAGATCTTGC 59.562 40.741 6.92 0.69 35.30 4.01
4256 4560 8.473219 TGCTATGCATATCCTAGTTAGATCTTG 58.527 37.037 6.92 0.00 31.71 3.02
4257 4561 8.601047 TGCTATGCATATCCTAGTTAGATCTT 57.399 34.615 6.92 0.00 31.71 2.40
4258 4562 8.474025 GTTGCTATGCATATCCTAGTTAGATCT 58.526 37.037 6.92 0.00 38.76 2.75
4259 4563 7.433719 CGTTGCTATGCATATCCTAGTTAGATC 59.566 40.741 6.92 0.00 38.76 2.75
4260 4564 7.122799 TCGTTGCTATGCATATCCTAGTTAGAT 59.877 37.037 6.92 0.00 38.76 1.98
4261 4565 6.433093 TCGTTGCTATGCATATCCTAGTTAGA 59.567 38.462 6.92 0.00 38.76 2.10
4262 4566 6.621613 TCGTTGCTATGCATATCCTAGTTAG 58.378 40.000 6.92 0.00 38.76 2.34
4263 4567 6.433093 TCTCGTTGCTATGCATATCCTAGTTA 59.567 38.462 6.92 0.00 38.76 2.24
4264 4568 5.243954 TCTCGTTGCTATGCATATCCTAGTT 59.756 40.000 6.92 0.00 38.76 2.24
4265 4569 4.767409 TCTCGTTGCTATGCATATCCTAGT 59.233 41.667 6.92 0.00 38.76 2.57
4266 4570 5.316327 TCTCGTTGCTATGCATATCCTAG 57.684 43.478 6.92 0.00 38.76 3.02
4267 4571 4.158579 CCTCTCGTTGCTATGCATATCCTA 59.841 45.833 6.92 0.00 38.76 2.94
4268 4572 3.056250 CCTCTCGTTGCTATGCATATCCT 60.056 47.826 6.92 0.00 38.76 3.24
4269 4573 3.257393 CCTCTCGTTGCTATGCATATCC 58.743 50.000 6.92 2.32 38.76 2.59
4270 4574 3.257393 CCCTCTCGTTGCTATGCATATC 58.743 50.000 6.92 3.45 38.76 1.63
4271 4575 2.027745 CCCCTCTCGTTGCTATGCATAT 60.028 50.000 6.92 0.00 38.76 1.78
4272 4576 1.344438 CCCCTCTCGTTGCTATGCATA 59.656 52.381 6.20 6.20 38.76 3.14
4273 4577 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
4274 4578 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
4275 4579 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
4276 4580 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
4277 4581 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
4278 4582 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
4279 4583 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
4280 4584 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
4281 4585 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
4282 4586 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
4283 4587 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
4284 4588 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
4285 4589 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
4286 4590 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
4287 4591 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
4288 4592 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
4289 4593 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
4290 4594 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
4291 4595 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
4292 4596 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
4293 4597 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
4294 4598 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
4295 4599 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
4296 4600 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
4297 4601 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
4298 4602 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
4299 4603 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
4300 4604 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
4302 4606 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
4313 4617 4.600012 ATGATTTTGCTTTCGGTCTACG 57.400 40.909 0.00 0.00 46.11 3.51
4314 4618 7.527457 ACTAAATGATTTTGCTTTCGGTCTAC 58.473 34.615 0.00 0.00 0.00 2.59
4315 4619 7.681939 ACTAAATGATTTTGCTTTCGGTCTA 57.318 32.000 0.00 0.00 0.00 2.59
4316 4620 6.575162 ACTAAATGATTTTGCTTTCGGTCT 57.425 33.333 0.00 0.00 0.00 3.85
4317 4621 7.007099 CGTTACTAAATGATTTTGCTTTCGGTC 59.993 37.037 0.00 0.00 0.00 4.79
4318 4622 6.799925 CGTTACTAAATGATTTTGCTTTCGGT 59.200 34.615 0.00 0.00 0.00 4.69
4319 4623 6.237201 GCGTTACTAAATGATTTTGCTTTCGG 60.237 38.462 0.00 0.00 0.00 4.30
4320 4624 6.502644 CGCGTTACTAAATGATTTTGCTTTCG 60.503 38.462 0.00 0.19 0.00 3.46
4321 4625 6.237201 CCGCGTTACTAAATGATTTTGCTTTC 60.237 38.462 4.92 0.00 0.00 2.62
4322 4626 5.571357 CCGCGTTACTAAATGATTTTGCTTT 59.429 36.000 4.92 0.00 0.00 3.51
4323 4627 5.092781 CCGCGTTACTAAATGATTTTGCTT 58.907 37.500 4.92 0.00 0.00 3.91
4324 4628 4.155280 ACCGCGTTACTAAATGATTTTGCT 59.845 37.500 4.92 0.00 0.00 3.91
4325 4629 4.408694 ACCGCGTTACTAAATGATTTTGC 58.591 39.130 4.92 0.00 0.00 3.68
4326 4630 6.081049 TCAACCGCGTTACTAAATGATTTTG 58.919 36.000 4.92 0.00 0.00 2.44
4327 4631 6.243811 TCAACCGCGTTACTAAATGATTTT 57.756 33.333 4.92 0.00 0.00 1.82
4328 4632 5.866335 TCAACCGCGTTACTAAATGATTT 57.134 34.783 4.92 0.00 0.00 2.17
4329 4633 5.353123 ACATCAACCGCGTTACTAAATGATT 59.647 36.000 4.92 0.00 0.00 2.57
4330 4634 4.873827 ACATCAACCGCGTTACTAAATGAT 59.126 37.500 4.92 0.00 0.00 2.45
4331 4635 4.247258 ACATCAACCGCGTTACTAAATGA 58.753 39.130 4.92 0.00 0.00 2.57
4332 4636 4.593597 ACATCAACCGCGTTACTAAATG 57.406 40.909 4.92 2.09 0.00 2.32
4333 4637 5.413499 ACTACATCAACCGCGTTACTAAAT 58.587 37.500 4.92 0.00 0.00 1.40
4334 4638 4.808558 ACTACATCAACCGCGTTACTAAA 58.191 39.130 4.92 0.00 0.00 1.85
4335 4639 4.414852 GACTACATCAACCGCGTTACTAA 58.585 43.478 4.92 0.00 0.00 2.24
4336 4640 3.485711 CGACTACATCAACCGCGTTACTA 60.486 47.826 4.92 0.00 0.00 1.82
4337 4641 2.730090 CGACTACATCAACCGCGTTACT 60.730 50.000 4.92 0.00 0.00 2.24
4338 4642 1.580704 CGACTACATCAACCGCGTTAC 59.419 52.381 4.92 0.00 0.00 2.50
4339 4643 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
4340 4644 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
4341 4645 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
4342 4646 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
4343 4647 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
4344 4648 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
4345 4649 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
4346 4650 4.088213 GTGAAGACGTTCGACTACATCAAC 59.912 45.833 0.00 0.00 35.17 3.18
4347 4651 4.224433 GTGAAGACGTTCGACTACATCAA 58.776 43.478 0.00 0.00 35.17 2.57
4348 4652 3.666111 CGTGAAGACGTTCGACTACATCA 60.666 47.826 0.00 0.00 40.91 3.07
4349 4653 2.839026 CGTGAAGACGTTCGACTACATC 59.161 50.000 0.00 0.00 40.91 3.06
4350 4654 2.481568 TCGTGAAGACGTTCGACTACAT 59.518 45.455 0.00 0.00 46.20 2.29
4351 4655 1.866601 TCGTGAAGACGTTCGACTACA 59.133 47.619 0.00 0.00 46.20 2.74
4352 4656 2.584166 TCGTGAAGACGTTCGACTAC 57.416 50.000 0.00 0.00 46.20 2.73
4353 4657 2.094894 GGATCGTGAAGACGTTCGACTA 59.905 50.000 0.00 0.00 46.20 2.59
4354 4658 1.135746 GGATCGTGAAGACGTTCGACT 60.136 52.381 0.00 0.00 46.20 4.18
4355 4659 1.257539 GGATCGTGAAGACGTTCGAC 58.742 55.000 0.00 0.00 46.20 4.20
4356 4660 0.876399 TGGATCGTGAAGACGTTCGA 59.124 50.000 0.00 0.00 46.20 3.71
4357 4661 1.385743 GTTGGATCGTGAAGACGTTCG 59.614 52.381 0.00 0.00 46.20 3.95
4358 4662 1.725164 GGTTGGATCGTGAAGACGTTC 59.275 52.381 0.00 0.00 46.20 3.95
4359 4663 1.607251 GGGTTGGATCGTGAAGACGTT 60.607 52.381 0.00 0.00 46.20 3.99
4360 4664 0.037605 GGGTTGGATCGTGAAGACGT 60.038 55.000 0.00 0.00 46.20 4.34
4362 4666 2.280628 GATGGGTTGGATCGTGAAGAC 58.719 52.381 0.00 0.00 0.00 3.01
4363 4667 1.209504 GGATGGGTTGGATCGTGAAGA 59.790 52.381 0.00 0.00 0.00 2.87
4364 4668 1.065491 TGGATGGGTTGGATCGTGAAG 60.065 52.381 0.00 0.00 0.00 3.02
4365 4669 0.988063 TGGATGGGTTGGATCGTGAA 59.012 50.000 0.00 0.00 0.00 3.18
4366 4670 0.988063 TTGGATGGGTTGGATCGTGA 59.012 50.000 0.00 0.00 0.00 4.35
4367 4671 1.340017 ACTTGGATGGGTTGGATCGTG 60.340 52.381 0.00 0.00 0.00 4.35
4368 4672 0.991920 ACTTGGATGGGTTGGATCGT 59.008 50.000 0.00 0.00 0.00 3.73
4369 4673 2.561569 GTACTTGGATGGGTTGGATCG 58.438 52.381 0.00 0.00 0.00 3.69
4370 4674 2.745152 CGGTACTTGGATGGGTTGGATC 60.745 54.545 0.00 0.00 0.00 3.36
4371 4675 1.211949 CGGTACTTGGATGGGTTGGAT 59.788 52.381 0.00 0.00 0.00 3.41
4372 4676 0.616371 CGGTACTTGGATGGGTTGGA 59.384 55.000 0.00 0.00 0.00 3.53
4373 4677 0.616371 TCGGTACTTGGATGGGTTGG 59.384 55.000 0.00 0.00 0.00 3.77
4374 4678 2.081462 GTTCGGTACTTGGATGGGTTG 58.919 52.381 0.00 0.00 0.00 3.77
4375 4679 1.338389 CGTTCGGTACTTGGATGGGTT 60.338 52.381 0.00 0.00 0.00 4.11
4376 4680 0.248289 CGTTCGGTACTTGGATGGGT 59.752 55.000 0.00 0.00 0.00 4.51
4377 4681 0.248289 ACGTTCGGTACTTGGATGGG 59.752 55.000 0.00 0.00 0.00 4.00
4378 4682 2.945447 TACGTTCGGTACTTGGATGG 57.055 50.000 0.00 0.00 0.00 3.51
4379 4683 3.855950 GTCTTACGTTCGGTACTTGGATG 59.144 47.826 0.00 0.00 0.00 3.51
4380 4684 3.507233 TGTCTTACGTTCGGTACTTGGAT 59.493 43.478 0.00 0.00 0.00 3.41
4381 4685 2.884012 TGTCTTACGTTCGGTACTTGGA 59.116 45.455 0.00 0.00 0.00 3.53
4382 4686 2.982470 GTGTCTTACGTTCGGTACTTGG 59.018 50.000 0.00 0.00 0.00 3.61
4383 4687 2.982470 GGTGTCTTACGTTCGGTACTTG 59.018 50.000 0.00 0.00 0.00 3.16
4384 4688 2.887152 AGGTGTCTTACGTTCGGTACTT 59.113 45.455 0.00 0.00 0.00 2.24
4385 4689 2.485814 GAGGTGTCTTACGTTCGGTACT 59.514 50.000 0.00 0.00 0.00 2.73
4386 4690 2.414691 GGAGGTGTCTTACGTTCGGTAC 60.415 54.545 0.00 0.00 0.00 3.34
4387 4691 1.812571 GGAGGTGTCTTACGTTCGGTA 59.187 52.381 0.00 0.00 0.00 4.02
4388 4692 0.600057 GGAGGTGTCTTACGTTCGGT 59.400 55.000 0.00 0.00 0.00 4.69
4389 4693 0.455633 CGGAGGTGTCTTACGTTCGG 60.456 60.000 0.00 0.00 41.32 4.30
4390 4694 3.011513 CGGAGGTGTCTTACGTTCG 57.988 57.895 0.00 0.00 39.50 3.95
4391 4695 1.694639 CACGGAGGTGTCTTACGTTC 58.305 55.000 0.00 0.00 39.38 3.95
4392 4696 3.879912 CACGGAGGTGTCTTACGTT 57.120 52.632 0.00 0.00 39.38 3.99
4429 4733 4.477975 GCTCGAGGGACGTCACCG 62.478 72.222 15.74 17.59 43.13 4.94
4430 4734 3.053849 GAGCTCGAGGGACGTCACC 62.054 68.421 15.74 14.36 43.13 4.02
4431 4735 1.587933 AAGAGCTCGAGGGACGTCAC 61.588 60.000 18.91 15.14 43.13 3.67
4432 4736 1.303398 AAGAGCTCGAGGGACGTCA 60.303 57.895 18.91 0.00 43.13 4.35
4433 4737 1.137825 CAAGAGCTCGAGGGACGTC 59.862 63.158 15.58 7.13 43.13 4.34
4434 4738 0.681564 ATCAAGAGCTCGAGGGACGT 60.682 55.000 15.58 0.00 43.13 4.34
4435 4739 0.030101 GATCAAGAGCTCGAGGGACG 59.970 60.000 15.58 0.00 44.09 4.79
4436 4740 0.387565 GGATCAAGAGCTCGAGGGAC 59.612 60.000 15.58 0.00 0.00 4.46
4437 4741 0.033109 TGGATCAAGAGCTCGAGGGA 60.033 55.000 15.58 5.14 0.00 4.20
4438 4742 0.388659 CTGGATCAAGAGCTCGAGGG 59.611 60.000 15.58 0.00 0.00 4.30
4439 4743 1.110442 ACTGGATCAAGAGCTCGAGG 58.890 55.000 15.58 1.84 0.00 4.63
4440 4744 2.957491 AACTGGATCAAGAGCTCGAG 57.043 50.000 8.45 8.45 0.00 4.04
4441 4745 3.131223 CCTTAACTGGATCAAGAGCTCGA 59.869 47.826 8.37 0.22 0.00 4.04
4442 4746 3.131223 TCCTTAACTGGATCAAGAGCTCG 59.869 47.826 8.37 0.00 0.00 5.03
4443 4747 4.081420 TGTCCTTAACTGGATCAAGAGCTC 60.081 45.833 5.27 5.27 38.52 4.09
4444 4748 3.840666 TGTCCTTAACTGGATCAAGAGCT 59.159 43.478 3.42 0.00 38.52 4.09
4445 4749 4.207891 TGTCCTTAACTGGATCAAGAGC 57.792 45.455 3.42 0.00 38.52 4.09
4446 4750 5.181748 CCTTGTCCTTAACTGGATCAAGAG 58.818 45.833 3.42 0.00 41.81 2.85
4447 4751 4.019321 CCCTTGTCCTTAACTGGATCAAGA 60.019 45.833 3.42 0.00 41.81 3.02
4448 4752 4.019321 TCCCTTGTCCTTAACTGGATCAAG 60.019 45.833 0.00 0.00 40.59 3.02
4449 4753 3.913799 TCCCTTGTCCTTAACTGGATCAA 59.086 43.478 0.00 0.00 38.52 2.57
4450 4754 3.519510 CTCCCTTGTCCTTAACTGGATCA 59.480 47.826 0.00 0.00 38.52 2.92
4451 4755 3.775316 TCTCCCTTGTCCTTAACTGGATC 59.225 47.826 0.00 0.00 38.52 3.36
4452 4756 3.777522 CTCTCCCTTGTCCTTAACTGGAT 59.222 47.826 0.00 0.00 38.52 3.41
4453 4757 3.173965 CTCTCCCTTGTCCTTAACTGGA 58.826 50.000 0.00 0.00 0.00 3.86
4454 4758 2.907042 ACTCTCCCTTGTCCTTAACTGG 59.093 50.000 0.00 0.00 0.00 4.00
4455 4759 4.563786 GGAACTCTCCCTTGTCCTTAACTG 60.564 50.000 0.00 0.00 35.42 3.16
4456 4760 3.583526 GGAACTCTCCCTTGTCCTTAACT 59.416 47.826 0.00 0.00 35.42 2.24
4457 4761 3.616802 CGGAACTCTCCCTTGTCCTTAAC 60.617 52.174 0.00 0.00 38.71 2.01
4458 4762 2.565834 CGGAACTCTCCCTTGTCCTTAA 59.434 50.000 0.00 0.00 38.71 1.85
4459 4763 2.176889 CGGAACTCTCCCTTGTCCTTA 58.823 52.381 0.00 0.00 38.71 2.69
4460 4764 0.977395 CGGAACTCTCCCTTGTCCTT 59.023 55.000 0.00 0.00 38.71 3.36
4461 4765 0.178929 ACGGAACTCTCCCTTGTCCT 60.179 55.000 0.00 0.00 38.71 3.85
4462 4766 0.246910 GACGGAACTCTCCCTTGTCC 59.753 60.000 0.00 0.00 38.71 4.02
4463 4767 0.966920 TGACGGAACTCTCCCTTGTC 59.033 55.000 0.00 0.00 38.71 3.18
4464 4768 0.969894 CTGACGGAACTCTCCCTTGT 59.030 55.000 0.00 0.00 38.71 3.16
4465 4769 0.390472 GCTGACGGAACTCTCCCTTG 60.390 60.000 0.00 0.00 38.71 3.61
4466 4770 0.832135 TGCTGACGGAACTCTCCCTT 60.832 55.000 0.00 0.00 38.71 3.95
4467 4771 1.228894 TGCTGACGGAACTCTCCCT 60.229 57.895 0.00 0.00 38.71 4.20
4468 4772 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
4469 4773 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
4470 4774 0.729816 GTCGTGCTGACGGAACTCTC 60.730 60.000 0.00 0.00 46.11 3.20
4471 4775 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
4472 4776 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
4486 4790 4.771356 ATCGTCACCACGCCGTCG 62.771 66.667 0.00 0.00 46.28 5.12
4487 4791 3.179265 CATCGTCACCACGCCGTC 61.179 66.667 0.00 0.00 46.28 4.79
4488 4792 3.509137 AACATCGTCACCACGCCGT 62.509 57.895 0.00 0.00 46.28 5.68
4489 4793 2.736995 AACATCGTCACCACGCCG 60.737 61.111 0.00 0.00 46.28 6.46
4490 4794 1.019278 ATCAACATCGTCACCACGCC 61.019 55.000 0.00 0.00 46.28 5.68
4491 4795 0.095245 CATCAACATCGTCACCACGC 59.905 55.000 0.00 0.00 46.28 5.34
4493 4797 3.002791 ACATCATCAACATCGTCACCAC 58.997 45.455 0.00 0.00 0.00 4.16
4494 4798 3.002102 CACATCATCAACATCGTCACCA 58.998 45.455 0.00 0.00 0.00 4.17
4495 4799 3.261580 TCACATCATCAACATCGTCACC 58.738 45.455 0.00 0.00 0.00 4.02
4496 4800 4.025396 GGATCACATCATCAACATCGTCAC 60.025 45.833 0.00 0.00 0.00 3.67
4497 4801 4.122046 GGATCACATCATCAACATCGTCA 58.878 43.478 0.00 0.00 0.00 4.35
4498 4802 3.183172 CGGATCACATCATCAACATCGTC 59.817 47.826 0.00 0.00 0.00 4.20
4499 4803 3.126073 CGGATCACATCATCAACATCGT 58.874 45.455 0.00 0.00 0.00 3.73
4500 4804 2.096565 GCGGATCACATCATCAACATCG 60.097 50.000 0.00 0.00 0.00 3.84
4501 4805 2.096565 CGCGGATCACATCATCAACATC 60.097 50.000 0.00 0.00 0.00 3.06
4502 4806 1.869132 CGCGGATCACATCATCAACAT 59.131 47.619 0.00 0.00 0.00 2.71
4503 4807 1.289276 CGCGGATCACATCATCAACA 58.711 50.000 0.00 0.00 0.00 3.33
4504 4808 0.041839 GCGCGGATCACATCATCAAC 60.042 55.000 8.83 0.00 0.00 3.18
4505 4809 0.461693 TGCGCGGATCACATCATCAA 60.462 50.000 8.83 0.00 0.00 2.57
4506 4810 1.143620 TGCGCGGATCACATCATCA 59.856 52.632 8.83 0.00 0.00 3.07
4507 4811 4.032356 TGCGCGGATCACATCATC 57.968 55.556 8.83 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.