>input_sequence_31491
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----------------------------------------------------------------------------CCAA
CAACGATCGTCGTCGTCTCGTGCGGCCCCGACACGTGCGTTGCTGGTAGTTACAGTGAGTGATAGTGAGCCATGGCGACG
ATGAGAGCCGCCGCCGCGCTGCTTGGCGCCGTGGTGCTGCTGTGCGCGCTCCGTCACGGCGGGGCGCAGCGGTACGAGGC
CATCTACAGCTTCGGCGACTCCATCTCCGACACCGGCAACCTCTGCGTCGGCGGCTGCCCGTCGTGGCTCACCACGGGCC
AGTCGCCCTACGGGGAGACTTTCTTCAAGCGCCCCACCGGCCGCTGCTCCGACGGCCGCGTCATCGTCGATTTCCTCGGT
ACCTACCTACCACTCGGTCTATGTAAGCTGTAAATATGGCGGCCGACATGATGGTGAACGTGACAAAGTTGGTGTATACG
TGTGTGTGCAGCCGAGCACTTTGGGCTGCCGCTGCTGCCGGCGTCCAAGGCCGGCGGCGACTTCAAGAAGGGCGCCAACA
TGGCGATCATCGGCGCCACCACCATGGACTTCGCCTTCTTCCAGTCCATCGGCCTCAGCGACAAGATCTGGAACAACGGG
CCCCTGGACACCCAGATCCAGTGGTTCCGGAAGCTCCTCCCGTCGGCCTGCGGCAAGGACTGCAAGAGGCACCTCTCCAA
GTCCCTGTTCGTGGTGGGCGAGTTCGGCGGCAACGACTACAACGCGGCGCTCTTCTCCGGTCGCACCATGGCCGACGTGA
GGGGCTACGTGCCGCGGGTCGTCAGCCACATCGTCCGTGGCCTCGAGGTAACCTACTCCCTACTTTGTCCACCACCTCCC
-CACTAATCTCACCGGCTCCTCTCAGGTAGGTGG------------------CTGATGTGATCATCTAACATTGTGTGTG
TTAATTTGGACGTATTTTTGTGCAGAACATGATCAGACTAGGCGCGATGGACGTGGTGGTGCCGGGGGTGCTCCCCATCG
GGTGCTTCCCGATCTACCTGACCCTCTACGGCACCTCCAACGCCGGCGACTACGACGGCGACGGGTGCCTCAAGAGCCAC
AACGAGCTCTCCGCCCACCACAACTCGCTGCTCCGGCGGAGCCTCGCCAACCTCCAGAGGACCTACCCCCGCACCAGGAT
CATGTACGCCGACTTCTACGCGCAGGTCATCCAGATGATCCGGGCCCCTCAGAATTTCGGTAAGTTGATGATGCAGTTTC
GTCTTCAAAACTTTT-AAGTTACA--------------------------------------------------------
--------------CATGTCTATATATAGCAACCATACATATCTTCCTATATGTTTAAAAATCTT----CCCACGGCGCA
TTGTTGTACTACTACATGTGAAGTAGGAATATCCATCCTTGTGTAAAGTCGTTGTGCCCGGCCAAACATGCCTGTCCGGA
GCAGCAAGGCGACGCCGTCTTTACATGTGAAGTAGGAATCGAGCTGCCGTGAGAGAGTTGAAGTTTCGGTGATCACGACA
CGCACGTTCATTCAGTAGGTGTAGACAGGTAGCTAGGGCACACGGGGGGCATGCAAGCAC-------GCTCATGGCCTAG
CTACCTAGCTACTCCGCGAGAGACATACATACATTTATCCAAAGTTGAGTCACATTGCTGCTTTCTTTGACGTAGAGAAA
AGCTAAGCTAGGTGCATGCACGCACAATAAGCTTTGGACAATATGGTCTCCTGGATTCTTAGCCCACCGGCGACTCATTC
GGCTAATTATCAGTGGTCGAGTTGTATATGCTCTCTCTCGGGACCATGACCCCTGTCTCTGTCCTGTCCATATAATTTGG
GAATCAATACCCGTCT----AACCAGTTGGCATGCATGCATGAC------------------------CCAATTATTATG
AAATGAGGGCGTGACAGTGTGCGTATAGTATAG----TAATACTGACGC-AAATCACTGTGCATGCATGTGACGGGCTCT
TCTTTCCGTGTATAACGGCGTATAATTTGACAGAGAGATGCCCCGAAAAGTCATGTTCACGAAGATAATAATACTAGCAT
GCCCATGTTCATGATACTGTGCACGATCTCATCCATCACGTACCATAATCGTCTCCTCATGGTCATCGGT----------
-ACGTGACAAAGCGGTCTGGATCACGCATCAGGACGCATACTGATTGGCAGTAGTA---AAATGAAGAACAAGGATGCAT
GGGCTGATAGAAACGGCTTTGGTG--CGTGTGGTTTTCAGGCCTCAAGTACGGGCTGAAGGTGTGCTGCGGCGCCGGCGG
GCAGGGCAAGTACAACTACAACAACAAGGCGAGGTGCGGCATGGCCGGGGCGAGCGCCTGCGCCGACCCGCAGAACTACC
TCATCTGGGACGGCATCCACCTCACGGAGGCGGCGTACCGTTCGATCGCCAACGGGTGGCTCAAGGGCCCCTACTGCAGC
CCCCGCATCCTGCACTGATCATTTTTATTTATGGATTCGTTGTTTTATTTATT---TACTTTATTGACTTGATGATGCGT
TTTCTGATCAAGTGTGGTGGGATCAATCGATGCGT----CATGTGTGTGTGTGTGTGTGGATGTAACAGCTAATATATAT
GATGGATGTTCATGGGGTAATTAATTAATTATTAGGTT------------------------------------------
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----------------------------
>chr1A_1_TraesCS1A01G321100
TCTTGACGCAGCTTCCTTGATCCAAGACGTAGTCCCTTCTTCCTGACTGCCCCAAATAATTAATCAACAGCTCGGACCCG
GCCGTGCATCACTACACATGCATGTGTTAGAGAGTAAGACAACTCTGTGTTGTGTCAGTGGACAAGCCAATCTGAAGAAT
CT-GTCTTAGTTACCGTTCTGCAATCTTG-AACTTGTATACTGCCGAAGCGAAGTTTGTTGACCACTAGTGTGCAGCCAC
ACTACTGCTGCGGAATGGTGCTGTTAAGCCTCGCCTAATCGCGCAGTTTAGGGTCGAACTATGTGCGCGATGAAGGCATA
CAAAT-AAATCATGTATCTGAAAGTGAAACGTGTGTGATAACTAATCTATCAGGCACGATTTAGAAAAGAGAGCCGCGTG
----------TGCATTGTTCGATCATCCAACGGGCATGGGAGCTCATACTAAAGCACACGAGAAGAGAAGGAGGACAGTA
GGGCGGGACATATGGAAATAAGTGGACGCATAAGACGGGTAACAATGTCTTCCGTTGGAACACACATGCATTTGTACTA-
-------------TAGTTGAAATTAACAAATTTAGTGTGTTTAGCATCAAAAGTTCGTTCGTTGCCCTTAGCCACTGAGT
AACCCTAGTCCTAGAATGTACTATTTCTTTCGCTGCGGGGGCCTAAAATATCTAGCTACAAGTAACTCTCACCTGTCAAG
TATCCCAGTCGACCAATCAACACCAAAATTAAAGGCGCTGTACCCATCAGCAAAGCGACTAGCAGCAGATAGAAAGAGAC
CAAAAGAGTCTAAAACGCTTTACGTACCACGCAATATCACAAAGATGCGTACGTGACAGACTAGA---CTGCGCTGCAGC
AGGGCCGGCGTCGTCAGTGAAGGGACGAATATGGCTGGAAGCTGCAGCACGCCGCCCCCAGCAGCAGC------AGTCCA
CCGGGGAAGGCGACGTCCCAACGGCCGCCCAAGCCCGCCTATAAATCCCAACGGATCTCCCCGCCGTAACCACACACCAA
CAACGATCGTCGTCGTCTCGTGCGGCCCCGACACGTGCGTTGCTGGTAGTTACAGTGAGTGATAGTGAGCCATGGCGACG
ATGAGAGCCGCCGCCGCGCTGCTTGGCGCCGTGGTGCTGCTGTGCGCGCTCCGTCACGGCGGGGCGCAGCGGTACGAGGC
CATCTACAGCTTCGGCGACTCCATCTCCGACACCGGCAACCTCTGCGTCGGCGGCTGCCCGTCGTGGCTCACCACGGGCC
AGTCGCCCTACGGGGAGACTTTCTTCAAGCGCCCCACCGGCCGCTGCTCCGACGGCCGCGTCATCGTCGATTTCCTCGGT
ACCTACCTACCACTCGGTCTATGTAAGCTGTAAATATGGCGGCCGACATGATGGTGAACGTGACAAAGTTGGTGTATACG
TGTGTGTGCAGCCGAGCACTTTGGGCTGCCGCTGCTGCCGGCGTCCAAGGCCGGCGGCGACTTCAAGAAGGGCGCCAACA
TGGCGATCATCGGCGCCACCACCATGGACTTCGCCTTCTTCCAGTCCATCGGCCTCAGCGACAAGATCTGGAACAACGGG
CCCCTGGACACCCAGATCCAGTGGTTCCGGAAGCTCCTCCCGTCGGCCTGCGGCAAGGACTGCAAGAGGCACCTCTCCAA
GTCCCTGTTCGTGGTGGGCGAGTTCGGCGGCAACGACTACAACGCGGCGCTCTTCTCCGGTCGCACCATGGCCGACGTGA
GGGGCTACGTGCCGCGGGTCGTCAGCCACATCGTCCGTGGCCTCGAGGTAACCTACTCCCTACTTTGTCCACCACCTCCC
-CACTAATCTCACCGGCTCCTCTCAGGTAGGTGG------------------CTGATGTGATCATCTAACATTGTGTGTG
TTAATTTGGACGTATTTTTGTGCAGAACATGATCAGACTAGGCGCGATGGACGTGGTGGTGCCGGGGGTGCTCCCCATCG
GGTGCTTCCCGATCTACCTGACCCTCTACGGCACCTCCAACGCCGGCGACTACGACGGCGACGGGTGCCTCAAGAGCCAC
AACGAGCTCTCCGCCCACCACAACTCGCTGCTCCGGCGGAGCCTCGCCAACCTCCAGAGGACCTACCCCCGCACCAGGAT
CATGTACGCCGACTTCTACGCGCAGGTCATCCAGATGATCCGGGCCCCTCAGAATTTCGGTAAGTTGATGATGCAGTTTC
GTCTTCAAAACTTTT-AAGTTACA--------------------------------------------------------
--------------CATGTCTATATATAGCAACCATACATATCTTCCTATATGTTTAAAAATCTT----CCCACGGCGCA
TTGTTGTACTACTACATGTGAAGTAGGAATATCCATCCTTGTGTAAAGTCGTTGTGCCCGGCCAAACATGCCTGTCCGGA
GCAGCAAGGCGACGCCGTCTTTACATGTGAAGTAGGAATCGAGCTGCCGTGAGAGAGTTGAAGTTTCGGTGATCACGACA
CGCACGTTCATTCAGTAGGTGTAGACAGGTAGCTAGGGCACACGGGGGGCATGCAAGCAC-------GCTCATGGCCTAG
CTACCTAGCTACTCCGCGAGAGACATACATACATTTATCCAAAGTTGAGTCACATTGCTGCTTTCTTTGACGTAGAGAAA
AGCTAAGCTAGGTGCATGCACGCACAATAAGCTTTGGACAATATGGTCTCCTGGATTCTTAGCCCACCGGCGACTCATTC
GGCTAATTATCAGTGGTCGAGTTGTATATGCTCTCTCTCGGGACCATGACCCCTGTCTCTGTCCTGTCCATATAATTTGG
GAATCAATACCCGTCT----AACCAGTTGGCATGCATGCATGAC------------------------CCAATTATTATG
AAATGAGGGCGTGACAGTGTGCGTATAGTATAG----TAATACTGACGC-AAATCACTGTGCATGCATGTGACGGGCTCT
TCTTTCCGTGTATAACGGCGTATAATTTGACAGAGAGATGCCCCGAAAAGTCATGTTCACGAAGATAATAATACTAGCAT
GCCCATGTTCATGATACTGTGCACGATCTCATCCATCACGTACCATAATCGTCTCCTCATGGTCATCGGT----------
-ACGTGACAAAGCGGTCTGGATCACGCATCAGGACGCATACTGATTGGCAGTAGTA---AAATGAAGAACAAGGATGCAT
GGGCTGATAGAAACGGCTTTGGTG--CGTGTGGTTTTCAGGCCTCAAGTACGGGCTGAAGGTGTGCTGCGGCGCCGGCGG
GCAGGGCAAGTACAACTACAACAACAAGGCGAGGTGCGGCATGGCCGGGGCGAGCGCCTGCGCCGACCCGCAGAACTACC
TCATCTGGGACGGCATCCACCTCACGGAGGCGGCGTACCGTTCGATCGCCAACGGGTGGCTCAAGGGCCCCTACTGCAGC
CCCCGCATCCTGCACTGATCATTTTTATTTATGGATTCGTTGTTTTATTTATT---TACTTTATTGACTTGATGATGCGT
TTTCTGATCAAGTGTGGTGGGATCAATCGATGCGT----CATGTGTGTGTGTGTGTGTGGATGTAACAGCTAATATATAT
GATGGATGTTCATGGGGTAATTAATTAATTATTAGGTTGCCTCCGGAGAATGAATAAATAAAACTATA-----GATGTGT
TGTTTGAGGTAATTATATCATTTAACTGTAAACTGAGGAAATAGCTTCGAG-CCCCTCTGATTAACTAAACTGAGGGAAT
GAATTCAACGAGGTCATCACTTCCCTTGCTATGTTTGGTCAGTTCCGCTTGACAATGATTTTGGTGATTGATTCCGCATC
AATCCATTTGCTATGACGTTCGCGGCCGATTTCCTTCATCCGCCATGTTCGTCAAGTCTTGGCATGCATTTGCGAATCAA
TCTATGGTTGGATGTTTAGGAGGACAGTGGTATCCCCAACCCATCAGAGTTGAAGTTCTAGACTTGATATTGGTGCTCGC
ATTTTTCTAAATTTATTTCAGACTTTCTAACGATGTGCTTTCAGTGAAAGGAGACTTTTTCGTCGACTACGAAGACGACT
GTGGCGGCGCCGTCCATCTCAAGATAATGTGTCAGCTCAGTCTCTTGAAGATGC----TAATAGGGGTAGGGCGTACGTG
TGTGTGTGTGTTTATAAAGATGAGTGTATGGACAAACGAC----------------------------------------
-------------------------------------------------------TCCACGACAAAGTTTTCTTGCTAGG
CCGGTTTTTGCAGGCCCATTTCACGTGGAACACTTTGAAAATTTCAAAGTTAATAGCCTAGGTGTTGACCAATC-----C
AGGCTCCAGTCCAGCTGGTCAAGGGTGAAGAGGAGGCTGTTGGGGAACGTAGTACTTTAAAAAAATTCTTACGATCACGC
AAGATCTAACTAGGATATGCATAGCAACGAGAGGGGAGAGTGTGTCCACGTACCCTCGTAGACCGAAAGCAAAATCATTT
AGTAACGCGGTTGATGTAGTCGAACGTCTTCACGATCCAACCCATCCAAGTACCGAACGTAAGACACCTCCGTGTTTAGC
ACACGTTCCGCACGGTGACGTCCCTCGAGCTCTTGATCCAGTTAAGGACAAGGGAGAGTTCCGTCAGCACGACGGCGTGG
TGACGATGTTGATGATGTGATCCGCGCA
>chr1D_1
TCTTCACGCAGCTTCCTTGATCCAAGATGTAGTCCCTTCTTCCTGACTCACCGAAATGATTAATCAACAGCTTGGACCCA
GCCGTGCATCACTACACATGCATGTGTTAGAGAGTAAGACAGCTCTGTGTTGTGTCAGTGGACAAGCCAATCTGAAGAAT
CTTGTCTTAGTTACCGTTCTGCAATCTTAAAACTTATATACTGGCGAAGCGACGTTTGTTGACCACTAGCGTGCAAC--C
ACTGCTGTTGTTGAATGGTGCTATTAAGCCTCACCTAATCGCCCAATTTAGCGTCGAACTATGTGC--GATGAAGGCATA
AAAATGAAATCATGTATCTGAAAGTGAAACGTGTGCGATAACTAATATATCGGGCACGATTTAGAAAAGAGAGCCGCGTG
CGGTATCGGTTGCATAATTCGATCATCCAACAGGCATGGGAGCTCATACTAAAGCACACGAGAAGAGAAGGAGGACAATA
GGGCGGGACAGATCGAAATAAATGGACGCATGACATGGACAACAATGTCTCCCGTTACAACACACGGACATTTGTGCACA
CGGACATTTGTGCTAGTTGAAATTAACAAATTTAATGTGTTTAGCATCAAA-GTTCGTTCGTTGCCCTTAGCCACTGAGT
AACCCAAGTCCTAAAATGTC---TTTCTTTCGCTGCTGGGGCCTAAAATATCTAGTTACAAGTAGCTCTCACCTGTCAAG
CATCCCAGTCGACCAATCAACACAAAAATTAAAGGCGCTGTACCCATCAGCAAAGCGACTAGCAGCAGATAAAAAGAGAC
CAAAAGAGTCTAAAACGCTTTACGTATCACGCAATATCGCAAAGATGCGTACGTGAGTGAC-AGACTGCTGCGCTGCAGC
AGGGCCGGCGTCGTCAGTGAAGGGACGAATATGGCTGGAAGCTGCAGCACGCCGCCCCCAGCAGCAGCAGCAGCAGTCCA
CCGGGGAAGGCGACGTCCTAACGGCCGCCCGAGCCCGCCTATAAATCCCAACGGATCTGCCCAAAGTAACCACA---CAC
ACCAACAA-TCGTCGTCTCGTGCGACCCCGACACGTGCGTTGCTGGTAGTTAC----AGTGATAGTGAGCCATGGCGACG
ATGAGGGCCGCCGCCGCGCTGCTTGGCGCCGTGGTGCTGCTGTGCGCGCTCCGTCACGGCGGGGCGCAGCGGTACGAGGC
CATCTACAGCTTCGGCGACTCCATCTCCGACACCGGCAACCTCTGCGTCGGCGGCTGCCCGTCGTGGCTCACCACCGGGC
AGTCGCCCTATGGGGAGACCTTCTTCAAGCGCCCCACCGGCCGCTGCTCCGACGGCCGCGTCATCGTCGACTTCCTTGGT
ACCTGCCTACCACCCAGTCTACGTAAACTGTAAAGATGGTGGCCGCAATGATGGTGAACGTGACAAAGTTGGTGTATATG
TGTGTGTGCAGCCGAGCACTTTGGGCTGCCGCTGCTGCCGGCGTCCAAGGCCGGCGGCGACTTCAAGAAGGGCGCCAACA
TGGCGATCATCGGCGCCACCACCATGGACTTCGGCTTCTTCCAGTCCATCGGCCTCAGCGACAAGATCTGGAACAACGGG
CCCCTGGACACCCAGATCCAGTGGTTCCGGAAGCTCCTCCCGTCCGCCTGCGGTAAGGACTGCAAGAGGCATCTCTCCAA
GTCCCTGTTCGTGGTGGGCGAGTTCGGCGGCAACGACTACAACGCGGCGCTCTTCTCCGGCCGGACCATGGCCGACGTGA
GGGGCTACGTGCCGCGGGTCGTCAGCCACATCGTCCGTGGCCTCGAGGTAACCTACCCCCTACTTTGTCCACCACCTCAC
TCACTAATCTCACCGGCTCCTCTCAGGTAGGTGG------------------CTGATGTGATCATCTGACAC----TGTG
TTAATTTGTACGTATTTTTGTGCAGAACATGATCAGACTAGGCGCGATGGACGTGGTGGTGCCGGGGGTGCTCCCCATCG
GGTGCTTCCCGATCTACCTGACCCTCTACGGCACCTCCAACGCCGGCGACTACGACGGCGACGGGTGCCTCAAGAGCTAC
AACGAGCTCTCCGCCCACCACAACTCGCTGCTCCGGCGGAGCCTCGCCAACCTCCAGAGGACCTACCCCCACACCAGGAT
CATGTACGCCGACTTCTACGCGCAGGTCATCCAGATGATCCGGGCCCCTCAGAATTTCGGTAAGTTGA---CACAGTTTC
GTCATCAAAACTTTACAAGTTACA--------------------------------------------------------
--------------TCTATCCATATCAAGCATACATACGTACATCTTCTTATGTTTAAAATCTTGCTCCCACACGGTGCA
TTCTTGT---ACTACATGTGGAGTAGGAATATCCATCCTTGTGTAAAGTCGTTGTGCCCATCCAAACATCCCTGTCCGGA
GCAGCAAGGCAAC---------ACATGTGAAGTAGGAATCGAGCTGCCGTGACAGAGTTGAAGTTTCGGTGATCACGACA
CGCACGTTCATTCAGTAGGTGTAGACAGGTAGCTAGGGCACACGGGGGCCATGCACGCACACGCACGGCTCATAGCCTAG
CTACCTAGCTACTCCGCGGGAGACGTC----CATTTATCCAAAGTTGAGTCACAGTCCAGCTTTCTTTGACGTAGAGAAA
AGCTAGCTCCAAGG--TGCATGCACAATAAGCTTTGGAAGATATGGTCTCCTGGATTCTTAGCCCACCGGCGACTCATTC
GGCTAATTA---GTGGTCGAATTATATATGCTCTCTCTTGGGACCATGACCCCTGTCTCTGTCCTGTCCATATAATTTGG
GAATCAATACCCATCT----AACCAGTTGGCATGCATGCATGCCCATCTAGCTAACGCATGCAC-GATCCAATTATTATG
AAATGAGGGCGTGACAGTGTGCGTATAGTATAGTATATAACACTGATGCTAAAGCACTGTACATGCATGTGACGAGCTCG
TCTTTCCAGGTATAACGGCGTATAATTTGACAGAGAGATGCTCCGGAAAGTCATGTTCACGAAACTAATAATGCTAGCAT
GCCCATGTTCATGATACTGTGCACGATCTCATCCATCACGTACTATAATCGTCTCCTCATGGTCATCACCCATCAGT---
-ACGTTACAAAGCGGTCTGGATCACGCACCAGGACGCATACTGATTGGCAGTAGTAGTAAAATGAAGGACAAGCAGG-AT
GGGCTAATAGAAATGGCTTTGGTG--TGTGTGGTTTTCAGGCCTCAAGTACGGGCTGAAGGTGTGCTGCGGAGCCGGCGG
GCAGGGCAAGTACAACTACAACAATAAGGCGAGGTGCGGCATGGCCGGGGCGAGCGCCTGCTCCGACCCGCAGAACTACC
TCATCTGGGACGGCATCCACCTCACGGAGGCGGCGTACCGTTCCATCGCCAACGGGTGGCTCAAGGGCCCCTACTGCAGC
CCCCGCATCCTGCACTGATCATTCTTTCTTATCGATTCCTTGTTTTATTTATTATTTATTTTATTGACTTGG---TGCGT
TTTCTGATCAAGTGTGGTGGGATCGATGGATGCGT----CA--------TGCGTGTGCGGATGTGACAGCTAATATATAT
GATGGATGTTCATGGGGTAATTAATTAATTATTAGGTTGTGTCCGGAGAATGAATGAATAAAACTATATACTAGATGTGT
TGTTTGGGGTTATTG-----TTTGACTGTAAACTGAGGAAATGGCTTCGAGCCCCCCCTGATTAACCGAACTGAGGAAAT
GAATCAAACGAGGTCATCA-TTTCCCTGCTATGTTTCGTAAGTTCCGCTTGAGCTTGATTTTGGTAACTGATTCCGCATT
AAGCCATTTGCTATGAGGTTTGCCGTCAATTTCCTTCACCCGCCATGTTCGTC--GTC-TGGCATGCATATGCGAACCAA
TCTGTGGTTGGACCGTTAGAAGGAGAGTGGTATCCCCGGCATATCAGAGTCAAAGTTCTAGACTTGACATTGGTGCTTGC
ATTTTTATGAATTTATTTCAGGCCTTTTGACGATGTGCTTTTGGTGGGAGGAGATTTTTCTGTCGACTACGAAGACGTCT
GTGACGACTTTGTCCATCTCAAGATGATGTGTCAGCTCGGTCTCTCGAAGGTGCTATATAATAGGGGTAGGGTGTACGTG
TGTG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr1B_539
TTGTATATATC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GAAATTAACAAATTTAGTCTGTTTAGCATCAAA-GTTCGTCCGTTGCCCTTAGCCACTGAGT
AACCCAAGTCCTAAAATGTC---TTTCTTTCGCTGCGGGGGCCTAAAATGTCTAGTTACAAGTAACTCTCACCTGTCAAG
TATCCCAGTCGACCAATCAACACAAAAATTAAAGGCGCTGTACCCATCAGCAAAGCGGCTAGCGGCAGATAAAAAGAGGC
CAAAAGAGTCTAAAACGCTTTACGTATCACGCAATATCACAAAGATGCGTACGTGAGTGAC-AGA---CTGCGCTGCAGT
AGGGCCGGCGTCGTCAGTGAAGGGACGAATATGGCTGGAAGCTGCAGCACGCCGCCCCCAGCAG------CAGCAGTCCA
CCGGGGAAGGCGACGTCCTAACGGCCGCCCAAGCCCGCCTATAAATCCCAACGGATCTCCCCGCCGTAACCACA---CAC
CAACGATCGTCGTCTCGTACGAC--CCCCAACACGTGCGTTGCTGGTAGTTAC----AGTAATAGTGAGCCATGGCGACG
ATGAGA------GCCGCGCTGCTTGGCGCCGTGGTGCTACTGTGCGCGCTCCGTCACGGCGGGGCGCAGCGGTACGAGGC
CATCTACAGCTTCGGCGACTCCATCTCCGACACCGGCAACCTCTGCGTCGGCGGCTGCCCGTCGTGGCTCACCACGGGGC
AGTCGCCCTACGGGGAGACCTTCTTCAAGCGCCCCACCGGCCGCTGCTCCGACGGCCGCGTCATCGTCGACTTCCTCGGT
ACCTACCAACTACTC--TCTATGTAAGCTGTAAAGATGGCGGCCGACATGATGGTGAATGTGACAAAGTTGGTATATATG
TGTGGGTGCAGCTGAGCACTTTGGGCTGCCGCTGCTGCCGGCGTCCAAGGCCGGCGGCGACTTCAAGAAGGGCGCCAACA
TGGCGATCATCGGCGCCACCACCATGGACTTCGGCTTCTTCCAGTCCATCGGCCTCAGCGACAAGATTTGGAACAACGGG
CCCCTGGACACCCAGATCCAGTGGTTCCGGAAGCTCCTGCCGTCCGCCTGCGGCAAAGACTGCAAGAGGCATCTCTCCAA
GTCCCTGTTCGTGGTGGGCGAGTTCGGCGGCAACGACTACAACGCGGCGCTCTTCTCCGGCCGGAGCATGGCCGACGTGA
GGGGCTACGTGCCGCGGGTCGTCAGTCACATCGTCCGTGGCCTCGAGGTAACCTACCCCCTACTTTGTCCACCACCTCG-
---CTAATCTCACTGACTCCTCTCAGGTAGGTGGCTCTCCCGGCCAGGTTTGCTGATGTGATCATCTAACACTGTGTGTG
TTAATTTGGACGTATTTTTGTGCAGAACATGATCAGACTGGGCGCGATGGACGTGGTGGTGCCGGGGGTGCTCCCCATCG
GGTGCTTCCCGATCTACCTGACCCTCTACGGCACCTCCAACGCCGGCGACTACGACGGCGATGGGTGCCTCAAGAGCTAC
AACGAGCTCTCCACCCACCACAACTCGCTGCTCCGGCGGAGCCTCGGCAACCTCCAGAAGACCTACCCCCGCACCAGGAT
CATGTACGCCGACTTCTACGCGCAGGTCATCCAGATGATACGGGCCCCTCAGAATTTCGGTAAGCTGA---TGCAATTTC
GTCTTCAAAACTTCAGTTACATATCTATTTTTTTCTTTTTTCTTTTCAAAAAGAGGATAACCCTCGACATCTGCATCATG
ACGATGCATGCAGCCATATCTATATATACCAACCATGCATTTTC------ATGTTTAAATTTTTT----CCCACGGTGCA
TTGTTGTACTA----ATGTGAAGTAGGAATATCCATCCTTGTGTAAAGTCGCTGTGCCCGGCCAAACATCCCTGGCCGGA
GCAGCAAGGCGACACCGTCTTTACATGTGAAGTAGGAATCCAGTTGCCGTGACAGAGTTGAAGTTTCGGTGATCACGACA
CGCACGTCCATTCGGTAGGTGTAGACAGGTAGCTAGGGCACACGGGGGCCATGC------ACGCACGGCTCATAGCCTAC
--ACCTAGCTACTCCTCGAGAGACATA----CATTTATCCAAAGTTGCGTCACAATACTGCTTTCTTAGACGTAGAGAAA
AGCTGGCT---AGG--TGCATGCACAATAAGCTTTGGGAAATATGGTCTCCTGGATTCTTAGCCCACCGGCGACTCATTC
GGCTAATTA---GTGGTCGAATTATATATGCTCTCTCTTGGGACCATGACCCCTGTCTCTGTCCTGTCCATATAATTTGG
GAATCAATACCCATCTAGCAAACCAGTTGGCATGCATGCATGTCCATCTAGCTAACGGAACACATGATCCAATTATTATG
AAATGAGGGCGTGACAGTGTGCGTATAGTATAG----TAATACTGACGCCAAAGCACTGTGCATGCATGTGACGGGCTCT
TCTTTCCGTGTATAACGGTGTATAATTTGACAGAGAGATGCCCCGAAAAGTCATGTTCACGAAAATAATAATACTAGCAT
GCCCATGTTCATGATACTGTGCACGATCTCATCCATCACGTACTATAATCGTCTTCTCATGGTCATCACTACATATAGTT
GACGTGACAAAGCGGCCGCGATCACGCATCAGGACGCATATTGATTGGCAGTGGTAGTAAAATGAAGAACAAGGATGCAT
GGTCTGATAAAAACGGCTTTGGTGTATGTGTGGTTTTCAGGCCTCAAGTACGGGCTGAAGGTGTGCTGCGGAGCCGGCGG
GCAGGGCAAGTACAACTACAACAACAAGGCGAGGTGCGGCATGTCCGGGGCGAGCGCCTGCTCCGACCCGCAGAACTACC
TCATCTGGGACGGCATCCACCTCACCGAGGCGGCATACCGTTCGATCGCCAACGGGTGGCTCAAGGGGCCTTACTGCAGC
CCCCGCATCCTGCACTGATCATTTTTATTTATGGATTCGTTGTTTTATTT--TATTTATTTTATTGACTTGA---TGCGT
TTTCTGATCAAGTGTGGTGGGATCGATCGATGCGTCGTGCATGTGTGTGTGTGTGTGTGAATGTAACAGCTAATTGATAT
GATGGATGCTCATGGGGTACTTAATTAATTATTAGGTTGCGTTCGGAGAATGAATGAATGAATAAAGCTAATTGATATGA
TGGA---------------------------------------------AG-CCCCCCTGATTAACTAAACTGAGGAAAT
GAACTCAACGAGGTCATCATTTCCCTTGCTATGTTTCGTATGTTCCGCTTGAGCTTGATTTTGGCAATTGATTCCGCATT
AATCCATTTGCTATGACGTTCGCGATCGATTTCCTTTATCCGCAATTTTCTTCAAGTC-CGGCATGCATATGCGAACCAA
CATGTGGTTGGATAGTTATAAGGATAGTGGTATCCCCAGCCCACCAGAGTTGAAGT-CTAGGCTTAACATTGATGCTCGT
ATT-TTATGGATTTATTTCAGGCCTTCTGATGATGTGCGTTCGGCAGGAGAAGACTTTTCCGTTGACTACAAAGACGTCT
GTGGCGACTTCGTCCATCTCAAGACAATATGTCACCTCAGTCTATCAAAGGTGC----TAATAGGGGTAGTGTGTACGTG
TGTGTTC------ATAAATGTGAGTGTATGTGCCTATGTATGAGCATCTACGTTGTATTGTGTTAAAAAAGTCAGGCGTG
CACATCTGGGTGGCTGTCATTCCCGATCTTGGATTGCTGATGTGGACAAACGGCATCCACAACAAAATTTTCTCACGAGG
CCGGTTTTTGCAGGCCGATTTCCCGCGGAACACTTTGAAAATTTCAAAGTTAATAGCATAGGTGCTTAGAGGACCAGATC
AGGCTCCGGTCCAGCTGGTCAAGGGTGAAGAGGA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>SNPs
----S----------------------S--------------------SS--S----S--------------S------S
-----------------------------------------S--------------------------------------
----------------------------S------S-------S--------S----------------S-----S-SS-
---S---S--SS----------S---------S---------S--S-----S--------------SS------------
S----------------------------------S----------S----S----------------------------
---------------SS--------------S---------------------------------------------S--
----------S--S-------S---------S-S-S--SS----------S-----SS-------SSS-------S-SS-
---------------------------------------------------S----------------------------
-----S-------S-----SSSS--------------------------------S------------------------
-----------------------S-----------------------------------------------S--------
--------------------------S-----------------------------SS---S------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------SSS--S
------------------------S----------------------------SSSS-----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------------------S--------------------------------------------------S---------
---------------S------------------S-------------------------------------------S-
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------S--------------------------S--------
------------------------------------------------------------S--S----------------
--------------------------------------------------------S---------------------S-
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------SSS---------
--------------S-----------------------------------------------------------------
-----------------S------------------------S-SSSSS-----------S-S-------------S---
---------------------------------------------------------------------S----------
-------------S--------------------------------------S---------------------------
------------------------------------------------S------S-----------------S------
---------------------------SSSS-----------------------S-S-----------------------
-----SSSSSSSS-SS----S-----------------S-----------------------------------------
---------SSS--------S--S--------------S-----------------------------------------
------------S-----------------------------S-------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------------------------------------S----------------
-------------------------------------------S-----------------------SS-----------
--------------------------------------------------------------------------------
--------------------------S--------------------------------------------S--------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S-------------SSS-----
------------------------S-------------------------------------------------------
----------------------------------------S--------------S------------------------
------S---S---SSSSSS---S------------------S-------------S-------------------S---
-------------------S----------------S--S------------SSS----------S-------------S
-------------------------S--------------------------------S----------S------S---
---S---------SS----S----S-------------S----------------------------S------------
------S-S------------S-S----S-------------S---SS-----------S-----------------S--
------S-SS-----------------------------------S----S---------------------S-------
-----SSSSSSSS-----SS----------SS-SS-S-SS----------------------------------------
------------------------------------------------------------S-----S------SS-S---
----------------S-----S--S-------------------------------S------S-S-SSSSS-------
-------S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_308
--------------------------------------------------------------------------------
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------------------------------------------------TAGGGTCGAACTATGTGCGC------------
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>reverse_1839
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------------------------------------------------------------------------------CC
CACTAATCTCACCGGCTC--------------------------------------------------------------
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>forward_519
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-------------------AAGTGGACGCATAAGACGGG-----------------------------------------
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>reverse_2609
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------------------------------------------------GCATGCAAGCACGCTCATG-------------
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>forward_1817
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-------------------------------------TGGCCTCGAGGTAACCTACT-----------------------
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>reverse_3188
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-------------------------------------------------------------------GGTACGTGACAAA
GCGGTCT-------------------------------------------------------------------------
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>forward_2741
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-GCTAAGCTAGGTGCATGCAC-----------------------------------------------------------
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>reverse_4739
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------------------CGTCCCTCGAGCTCTTGATC------------------------------------------
----------------------------
