Multiple sequence alignment - TraesCS1A01G319800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G319800 chr1A 100.000 2741 0 0 1 2741 510449437 510452177 0.000000e+00 5062.0
1 TraesCS1A01G319800 chr1A 86.061 330 34 5 1610 1937 510816702 510817021 7.270000e-91 344.0
2 TraesCS1A01G319800 chr1D 92.750 1862 103 15 890 2741 413697292 413699131 0.000000e+00 2662.0
3 TraesCS1A01G319800 chr1D 94.464 289 15 1 1314 1602 403709932 403709645 6.970000e-121 444.0
4 TraesCS1A01G319800 chr1B 94.595 851 43 3 893 1741 558223850 558224699 0.000000e+00 1314.0
5 TraesCS1A01G319800 chr1B 89.506 991 76 8 1761 2741 558224783 558225755 0.000000e+00 1229.0
6 TraesCS1A01G319800 chr1B 83.468 496 52 15 1307 1798 558504674 558505143 4.190000e-118 435.0
7 TraesCS1A01G319800 chr6D 95.502 289 12 1 1314 1602 58039178 58038891 6.920000e-126 460.0
8 TraesCS1A01G319800 chr2D 95.156 289 13 1 1314 1602 423279301 423279014 3.220000e-124 455.0
9 TraesCS1A01G319800 chr7D 78.771 179 30 6 192 362 68781785 68781607 2.230000e-21 113.0
10 TraesCS1A01G319800 chr3D 100.000 29 0 0 2648 2676 172342000 172342028 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G319800 chr1A 510449437 510452177 2740 False 5062.0 5062 100.0000 1 2741 1 chr1A.!!$F1 2740
1 TraesCS1A01G319800 chr1D 413697292 413699131 1839 False 2662.0 2662 92.7500 890 2741 1 chr1D.!!$F1 1851
2 TraesCS1A01G319800 chr1B 558223850 558225755 1905 False 1271.5 1314 92.0505 893 2741 2 chr1B.!!$F2 1848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 781 0.031721 CTACGTGGGGAATAGGACGC 59.968 60.0 0.0 0.0 35.21 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 2501 1.476891 GGCGAAGGAGATGAGTACACA 59.523 52.381 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.268796 TGATGATGAGGGAGGTTGGA 57.731 50.000 0.00 0.00 0.00 3.53
20 21 2.121948 TGATGATGAGGGAGGTTGGAG 58.878 52.381 0.00 0.00 0.00 3.86
21 22 2.293118 TGATGATGAGGGAGGTTGGAGA 60.293 50.000 0.00 0.00 0.00 3.71
22 23 2.342406 TGATGAGGGAGGTTGGAGAA 57.658 50.000 0.00 0.00 0.00 2.87
23 24 2.191400 TGATGAGGGAGGTTGGAGAAG 58.809 52.381 0.00 0.00 0.00 2.85
24 25 1.488393 GATGAGGGAGGTTGGAGAAGG 59.512 57.143 0.00 0.00 0.00 3.46
25 26 0.491823 TGAGGGAGGTTGGAGAAGGA 59.508 55.000 0.00 0.00 0.00 3.36
26 27 1.132527 TGAGGGAGGTTGGAGAAGGAA 60.133 52.381 0.00 0.00 0.00 3.36
27 28 1.557371 GAGGGAGGTTGGAGAAGGAAG 59.443 57.143 0.00 0.00 0.00 3.46
28 29 0.034960 GGGAGGTTGGAGAAGGAAGC 60.035 60.000 0.00 0.00 0.00 3.86
29 30 0.693049 GGAGGTTGGAGAAGGAAGCA 59.307 55.000 0.00 0.00 0.00 3.91
30 31 1.283321 GGAGGTTGGAGAAGGAAGCAT 59.717 52.381 0.00 0.00 0.00 3.79
31 32 2.637947 GAGGTTGGAGAAGGAAGCATC 58.362 52.381 0.00 0.00 0.00 3.91
32 33 1.988107 AGGTTGGAGAAGGAAGCATCA 59.012 47.619 0.00 0.00 0.00 3.07
33 34 2.087646 GGTTGGAGAAGGAAGCATCAC 58.912 52.381 0.00 0.00 0.00 3.06
34 35 2.553028 GGTTGGAGAAGGAAGCATCACA 60.553 50.000 0.00 0.00 0.00 3.58
35 36 3.350833 GTTGGAGAAGGAAGCATCACAT 58.649 45.455 0.00 0.00 0.00 3.21
36 37 4.517285 GTTGGAGAAGGAAGCATCACATA 58.483 43.478 0.00 0.00 0.00 2.29
37 38 4.412796 TGGAGAAGGAAGCATCACATAG 57.587 45.455 0.00 0.00 0.00 2.23
38 39 3.135348 TGGAGAAGGAAGCATCACATAGG 59.865 47.826 0.00 0.00 0.00 2.57
39 40 3.495806 GGAGAAGGAAGCATCACATAGGG 60.496 52.174 0.00 0.00 0.00 3.53
40 41 2.158696 AGAAGGAAGCATCACATAGGGC 60.159 50.000 0.00 0.00 0.00 5.19
41 42 0.475906 AGGAAGCATCACATAGGGCC 59.524 55.000 0.00 0.00 0.00 5.80
42 43 0.183492 GGAAGCATCACATAGGGCCA 59.817 55.000 6.18 0.00 0.00 5.36
43 44 1.202976 GGAAGCATCACATAGGGCCAT 60.203 52.381 6.18 0.00 0.00 4.40
44 45 2.157738 GAAGCATCACATAGGGCCATC 58.842 52.381 6.18 0.00 0.00 3.51
45 46 0.403271 AGCATCACATAGGGCCATCC 59.597 55.000 6.18 0.00 0.00 3.51
55 56 4.828296 GGCCATCCCCCACTGCAG 62.828 72.222 13.48 13.48 0.00 4.41
56 57 4.052518 GCCATCCCCCACTGCAGT 62.053 66.667 15.25 15.25 0.00 4.40
57 58 2.765969 CCATCCCCCACTGCAGTT 59.234 61.111 18.94 0.00 0.00 3.16
58 59 1.077265 CCATCCCCCACTGCAGTTT 59.923 57.895 18.94 0.00 0.00 2.66
59 60 0.542702 CCATCCCCCACTGCAGTTTT 60.543 55.000 18.94 0.00 0.00 2.43
60 61 0.604578 CATCCCCCACTGCAGTTTTG 59.395 55.000 18.94 8.74 0.00 2.44
61 62 0.188342 ATCCCCCACTGCAGTTTTGT 59.812 50.000 18.94 0.00 0.00 2.83
62 63 0.847373 TCCCCCACTGCAGTTTTGTA 59.153 50.000 18.94 0.00 0.00 2.41
63 64 1.427368 TCCCCCACTGCAGTTTTGTAT 59.573 47.619 18.94 0.00 0.00 2.29
64 65 1.545582 CCCCCACTGCAGTTTTGTATG 59.454 52.381 18.94 3.69 0.00 2.39
65 66 2.238521 CCCCACTGCAGTTTTGTATGT 58.761 47.619 18.94 0.00 0.00 2.29
66 67 2.228822 CCCCACTGCAGTTTTGTATGTC 59.771 50.000 18.94 0.00 0.00 3.06
67 68 2.095768 CCCACTGCAGTTTTGTATGTCG 60.096 50.000 18.94 1.15 0.00 4.35
68 69 2.574322 CACTGCAGTTTTGTATGTCGC 58.426 47.619 18.94 0.00 0.00 5.19
69 70 1.194547 ACTGCAGTTTTGTATGTCGCG 59.805 47.619 15.25 0.00 0.00 5.87
70 71 1.194547 CTGCAGTTTTGTATGTCGCGT 59.805 47.619 5.77 0.00 0.00 6.01
71 72 1.600013 TGCAGTTTTGTATGTCGCGTT 59.400 42.857 5.77 0.00 0.00 4.84
72 73 2.032302 TGCAGTTTTGTATGTCGCGTTT 59.968 40.909 5.77 0.00 0.00 3.60
73 74 3.040099 GCAGTTTTGTATGTCGCGTTTT 58.960 40.909 5.77 0.00 0.00 2.43
74 75 4.212911 GCAGTTTTGTATGTCGCGTTTTA 58.787 39.130 5.77 0.00 0.00 1.52
75 76 4.671516 GCAGTTTTGTATGTCGCGTTTTAA 59.328 37.500 5.77 0.00 0.00 1.52
76 77 5.385615 GCAGTTTTGTATGTCGCGTTTTAAC 60.386 40.000 5.77 0.00 0.00 2.01
77 78 5.114423 CAGTTTTGTATGTCGCGTTTTAACC 59.886 40.000 5.77 0.00 0.00 2.85
78 79 3.436817 TTGTATGTCGCGTTTTAACCG 57.563 42.857 5.77 0.00 0.00 4.44
79 80 2.402305 TGTATGTCGCGTTTTAACCGT 58.598 42.857 5.77 0.00 0.00 4.83
80 81 2.799412 TGTATGTCGCGTTTTAACCGTT 59.201 40.909 5.77 0.00 0.00 4.44
81 82 3.247173 TGTATGTCGCGTTTTAACCGTTT 59.753 39.130 5.77 0.00 0.00 3.60
82 83 2.821307 TGTCGCGTTTTAACCGTTTT 57.179 40.000 5.77 0.00 0.00 2.43
83 84 2.702922 TGTCGCGTTTTAACCGTTTTC 58.297 42.857 5.77 0.00 0.00 2.29
84 85 2.036217 GTCGCGTTTTAACCGTTTTCC 58.964 47.619 5.77 0.00 0.00 3.13
85 86 1.939255 TCGCGTTTTAACCGTTTTCCT 59.061 42.857 5.77 0.00 0.00 3.36
86 87 2.354199 TCGCGTTTTAACCGTTTTCCTT 59.646 40.909 5.77 0.00 0.00 3.36
87 88 3.107407 CGCGTTTTAACCGTTTTCCTTT 58.893 40.909 0.00 0.00 0.00 3.11
88 89 3.547068 CGCGTTTTAACCGTTTTCCTTTT 59.453 39.130 0.00 0.00 0.00 2.27
89 90 4.546644 CGCGTTTTAACCGTTTTCCTTTTG 60.547 41.667 0.00 0.00 0.00 2.44
90 91 4.259890 GCGTTTTAACCGTTTTCCTTTTGG 60.260 41.667 0.00 0.00 42.21 3.28
91 92 4.268167 CGTTTTAACCGTTTTCCTTTTGGG 59.732 41.667 0.00 0.00 40.87 4.12
92 93 5.177326 GTTTTAACCGTTTTCCTTTTGGGT 58.823 37.500 0.00 0.00 40.87 4.51
93 94 5.417754 TTTAACCGTTTTCCTTTTGGGTT 57.582 34.783 0.00 0.00 40.57 4.11
94 95 3.985019 AACCGTTTTCCTTTTGGGTTT 57.015 38.095 0.00 0.00 40.87 3.27
95 96 3.530265 ACCGTTTTCCTTTTGGGTTTC 57.470 42.857 0.00 0.00 40.87 2.78
96 97 2.832733 ACCGTTTTCCTTTTGGGTTTCA 59.167 40.909 0.00 0.00 40.87 2.69
97 98 3.261137 ACCGTTTTCCTTTTGGGTTTCAA 59.739 39.130 0.00 0.00 40.87 2.69
98 99 4.080807 ACCGTTTTCCTTTTGGGTTTCAAT 60.081 37.500 0.00 0.00 40.87 2.57
99 100 4.878971 CCGTTTTCCTTTTGGGTTTCAATT 59.121 37.500 0.00 0.00 40.87 2.32
100 101 5.355630 CCGTTTTCCTTTTGGGTTTCAATTT 59.644 36.000 0.00 0.00 40.87 1.82
101 102 6.127869 CCGTTTTCCTTTTGGGTTTCAATTTT 60.128 34.615 0.00 0.00 40.87 1.82
102 103 6.964370 CGTTTTCCTTTTGGGTTTCAATTTTC 59.036 34.615 0.00 0.00 40.87 2.29
103 104 7.148323 CGTTTTCCTTTTGGGTTTCAATTTTCT 60.148 33.333 0.00 0.00 40.87 2.52
104 105 8.519526 GTTTTCCTTTTGGGTTTCAATTTTCTT 58.480 29.630 0.00 0.00 40.87 2.52
105 106 7.622893 TTCCTTTTGGGTTTCAATTTTCTTG 57.377 32.000 0.00 0.00 40.87 3.02
106 107 6.118852 TCCTTTTGGGTTTCAATTTTCTTGG 58.881 36.000 0.00 0.00 40.87 3.61
107 108 5.221028 CCTTTTGGGTTTCAATTTTCTTGGC 60.221 40.000 0.00 0.00 34.98 4.52
108 109 4.769345 TTGGGTTTCAATTTTCTTGGCT 57.231 36.364 0.00 0.00 0.00 4.75
109 110 4.335400 TGGGTTTCAATTTTCTTGGCTC 57.665 40.909 0.00 0.00 0.00 4.70
110 111 3.966665 TGGGTTTCAATTTTCTTGGCTCT 59.033 39.130 0.00 0.00 0.00 4.09
111 112 4.039124 TGGGTTTCAATTTTCTTGGCTCTC 59.961 41.667 0.00 0.00 0.00 3.20
112 113 4.281941 GGGTTTCAATTTTCTTGGCTCTCT 59.718 41.667 0.00 0.00 0.00 3.10
113 114 5.221521 GGGTTTCAATTTTCTTGGCTCTCTT 60.222 40.000 0.00 0.00 0.00 2.85
114 115 5.923114 GGTTTCAATTTTCTTGGCTCTCTTC 59.077 40.000 0.00 0.00 0.00 2.87
115 116 6.239148 GGTTTCAATTTTCTTGGCTCTCTTCT 60.239 38.462 0.00 0.00 0.00 2.85
116 117 5.954296 TCAATTTTCTTGGCTCTCTTCTG 57.046 39.130 0.00 0.00 0.00 3.02
117 118 5.380043 TCAATTTTCTTGGCTCTCTTCTGT 58.620 37.500 0.00 0.00 0.00 3.41
118 119 5.829924 TCAATTTTCTTGGCTCTCTTCTGTT 59.170 36.000 0.00 0.00 0.00 3.16
119 120 6.322201 TCAATTTTCTTGGCTCTCTTCTGTTT 59.678 34.615 0.00 0.00 0.00 2.83
120 121 6.721704 ATTTTCTTGGCTCTCTTCTGTTTT 57.278 33.333 0.00 0.00 0.00 2.43
121 122 6.530019 TTTTCTTGGCTCTCTTCTGTTTTT 57.470 33.333 0.00 0.00 0.00 1.94
190 191 8.773404 AGTATGTGTCTACTTTTTCCATACAC 57.227 34.615 0.00 0.00 36.98 2.90
191 192 8.372459 AGTATGTGTCTACTTTTTCCATACACA 58.628 33.333 7.72 7.72 46.65 3.72
194 195 7.870826 TGTGTCTACTTTTTCCATACACATTG 58.129 34.615 0.00 0.00 40.38 2.82
195 196 7.500892 TGTGTCTACTTTTTCCATACACATTGT 59.499 33.333 0.00 0.00 40.38 2.71
196 197 8.995220 GTGTCTACTTTTTCCATACACATTGTA 58.005 33.333 0.00 0.00 37.24 2.41
197 198 9.733556 TGTCTACTTTTTCCATACACATTGTAT 57.266 29.630 0.00 0.00 43.81 2.29
253 254 8.803201 TTCATGTTTAACATTTCGCAAATACA 57.197 26.923 7.97 0.00 36.53 2.29
254 255 8.978564 TCATGTTTAACATTTCGCAAATACAT 57.021 26.923 7.97 0.00 36.53 2.29
255 256 8.858186 TCATGTTTAACATTTCGCAAATACATG 58.142 29.630 7.97 17.37 40.64 3.21
256 257 7.573916 TGTTTAACATTTCGCAAATACATGG 57.426 32.000 0.00 0.00 0.00 3.66
257 258 7.148641 TGTTTAACATTTCGCAAATACATGGT 58.851 30.769 0.00 0.00 0.00 3.55
258 259 8.297426 TGTTTAACATTTCGCAAATACATGGTA 58.703 29.630 0.00 0.00 0.00 3.25
259 260 9.130312 GTTTAACATTTCGCAAATACATGGTAA 57.870 29.630 0.00 0.00 0.00 2.85
260 261 8.676454 TTAACATTTCGCAAATACATGGTAAC 57.324 30.769 0.00 0.00 0.00 2.50
322 323 9.751542 TTTCCATAAACATTGTACATTTTTCGT 57.248 25.926 0.00 0.00 0.00 3.85
351 352 8.973378 ACATTTGAAACATTATTTTACACACGG 58.027 29.630 0.00 0.00 0.00 4.94
352 353 8.973378 CATTTGAAACATTATTTTACACACGGT 58.027 29.630 0.00 0.00 0.00 4.83
353 354 8.928270 TTTGAAACATTATTTTACACACGGTT 57.072 26.923 0.00 0.00 0.00 4.44
356 357 9.448294 TGAAACATTATTTTACACACGGTTAAC 57.552 29.630 0.00 0.00 0.00 2.01
357 358 9.448294 GAAACATTATTTTACACACGGTTAACA 57.552 29.630 8.10 0.00 0.00 2.41
358 359 9.968870 AAACATTATTTTACACACGGTTAACAT 57.031 25.926 8.10 0.00 0.00 2.71
359 360 9.968870 AACATTATTTTACACACGGTTAACATT 57.031 25.926 8.10 0.00 0.00 2.71
360 361 9.968870 ACATTATTTTACACACGGTTAACATTT 57.031 25.926 8.10 0.00 0.00 2.32
383 384 7.875316 TTTTTGAAACAAACATTCTCGAACA 57.125 28.000 0.00 0.00 0.00 3.18
384 385 8.472683 TTTTTGAAACAAACATTCTCGAACAT 57.527 26.923 0.00 0.00 0.00 2.71
385 386 8.472683 TTTTGAAACAAACATTCTCGAACATT 57.527 26.923 0.00 0.00 0.00 2.71
386 387 8.472683 TTTGAAACAAACATTCTCGAACATTT 57.527 26.923 0.00 0.00 0.00 2.32
387 388 8.472683 TTGAAACAAACATTCTCGAACATTTT 57.527 26.923 0.00 0.00 0.00 1.82
388 389 8.472683 TGAAACAAACATTCTCGAACATTTTT 57.527 26.923 0.00 0.00 0.00 1.94
464 465 8.621532 ACATGCTGAAGTATTTCTTTAAGTGA 57.378 30.769 0.00 0.00 36.40 3.41
465 466 9.236006 ACATGCTGAAGTATTTCTTTAAGTGAT 57.764 29.630 0.00 0.00 36.40 3.06
546 547 9.955208 TGTCACGAATATATATTAGAAACACGT 57.045 29.630 18.93 13.82 0.00 4.49
563 564 9.145865 AGAAACACGTGAACATTTTTAAAATGT 57.854 25.926 24.96 24.96 42.19 2.71
567 568 9.355215 ACACGTGAACATTTTTAAAATGTAACA 57.645 25.926 28.89 26.32 39.73 2.41
568 569 9.613153 CACGTGAACATTTTTAAAATGTAACAC 57.387 29.630 32.74 32.74 39.73 3.32
569 570 9.355215 ACGTGAACATTTTTAAAATGTAACACA 57.645 25.926 35.85 28.05 41.86 3.72
607 608 9.959749 GTACTAACCATTTTCTTGAATTTCACA 57.040 29.630 0.00 0.00 0.00 3.58
609 610 8.912988 ACTAACCATTTTCTTGAATTTCACAGA 58.087 29.630 0.00 3.37 0.00 3.41
610 611 9.185192 CTAACCATTTTCTTGAATTTCACAGAC 57.815 33.333 0.00 0.00 0.00 3.51
611 612 7.111247 ACCATTTTCTTGAATTTCACAGACA 57.889 32.000 0.00 0.00 0.00 3.41
612 613 7.729116 ACCATTTTCTTGAATTTCACAGACAT 58.271 30.769 0.00 0.00 0.00 3.06
613 614 8.206189 ACCATTTTCTTGAATTTCACAGACATT 58.794 29.630 0.00 0.00 0.00 2.71
614 615 9.048446 CCATTTTCTTGAATTTCACAGACATTT 57.952 29.630 0.00 0.00 0.00 2.32
659 660 8.846943 TTTTCATGTCATGAGTAGTACATGTT 57.153 30.769 14.98 0.00 45.94 2.71
660 661 8.846943 TTTCATGTCATGAGTAGTACATGTTT 57.153 30.769 14.98 0.00 45.94 2.83
661 662 8.846943 TTCATGTCATGAGTAGTACATGTTTT 57.153 30.769 14.98 0.00 45.94 2.43
662 663 8.846943 TCATGTCATGAGTAGTACATGTTTTT 57.153 30.769 11.62 0.00 45.94 1.94
692 693 9.683069 AACACATGAATTCTCTTTAAATGTCAC 57.317 29.630 7.05 0.00 0.00 3.67
693 694 8.849168 ACACATGAATTCTCTTTAAATGTCACA 58.151 29.630 7.05 0.00 0.00 3.58
694 695 9.681692 CACATGAATTCTCTTTAAATGTCACAA 57.318 29.630 7.05 0.00 0.00 3.33
725 726 5.999205 TTTGCCAATGGTATCAAACATCT 57.001 34.783 0.00 0.00 0.00 2.90
726 727 5.999205 TTGCCAATGGTATCAAACATCTT 57.001 34.783 0.00 0.00 0.00 2.40
727 728 5.999205 TGCCAATGGTATCAAACATCTTT 57.001 34.783 0.00 0.00 0.00 2.52
728 729 6.357579 TGCCAATGGTATCAAACATCTTTT 57.642 33.333 0.00 0.00 0.00 2.27
729 730 6.164876 TGCCAATGGTATCAAACATCTTTTG 58.835 36.000 0.00 0.00 0.00 2.44
730 731 6.014755 TGCCAATGGTATCAAACATCTTTTGA 60.015 34.615 0.00 2.11 41.91 2.69
731 732 7.043565 GCCAATGGTATCAAACATCTTTTGAT 58.956 34.615 14.77 14.77 46.97 2.57
732 733 7.223387 GCCAATGGTATCAAACATCTTTTGATC 59.777 37.037 14.00 7.64 43.40 2.92
733 734 8.252417 CCAATGGTATCAAACATCTTTTGATCA 58.748 33.333 14.00 8.82 43.40 2.92
734 735 9.811995 CAATGGTATCAAACATCTTTTGATCAT 57.188 29.630 14.00 10.36 43.40 2.45
756 757 8.835467 TCATTATGCTAACAATTTTCTTACGC 57.165 30.769 0.00 0.00 0.00 4.42
757 758 8.673711 TCATTATGCTAACAATTTTCTTACGCT 58.326 29.630 0.00 0.00 0.00 5.07
758 759 8.736742 CATTATGCTAACAATTTTCTTACGCTG 58.263 33.333 0.00 0.00 0.00 5.18
759 760 4.472286 TGCTAACAATTTTCTTACGCTGC 58.528 39.130 0.00 0.00 0.00 5.25
760 761 3.851969 GCTAACAATTTTCTTACGCTGCC 59.148 43.478 0.00 0.00 0.00 4.85
761 762 3.297830 AACAATTTTCTTACGCTGCCC 57.702 42.857 0.00 0.00 0.00 5.36
762 763 2.514803 ACAATTTTCTTACGCTGCCCT 58.485 42.857 0.00 0.00 0.00 5.19
763 764 3.681593 ACAATTTTCTTACGCTGCCCTA 58.318 40.909 0.00 0.00 0.00 3.53
764 765 3.439129 ACAATTTTCTTACGCTGCCCTAC 59.561 43.478 0.00 0.00 0.00 3.18
765 766 1.717194 TTTTCTTACGCTGCCCTACG 58.283 50.000 0.00 0.00 0.00 3.51
766 767 0.604578 TTTCTTACGCTGCCCTACGT 59.395 50.000 0.00 0.00 45.85 3.57
767 768 0.108992 TTCTTACGCTGCCCTACGTG 60.109 55.000 0.00 0.00 43.44 4.49
768 769 1.518572 CTTACGCTGCCCTACGTGG 60.519 63.158 0.00 0.00 43.44 4.94
779 780 0.672342 CCTACGTGGGGAATAGGACG 59.328 60.000 10.68 0.00 38.20 4.79
780 781 0.031721 CTACGTGGGGAATAGGACGC 59.968 60.000 0.00 0.00 35.21 5.19
781 782 0.683828 TACGTGGGGAATAGGACGCA 60.684 55.000 0.00 0.00 35.21 5.24
782 783 1.520787 CGTGGGGAATAGGACGCAC 60.521 63.158 0.00 0.00 44.22 5.34
783 784 1.520787 GTGGGGAATAGGACGCACG 60.521 63.158 0.00 0.00 40.02 5.34
784 785 1.985662 TGGGGAATAGGACGCACGT 60.986 57.895 0.00 0.00 0.00 4.49
785 786 1.219935 GGGGAATAGGACGCACGTT 59.780 57.895 0.00 0.00 0.00 3.99
786 787 0.808847 GGGGAATAGGACGCACGTTC 60.809 60.000 0.00 0.00 0.00 3.95
787 788 0.808847 GGGAATAGGACGCACGTTCC 60.809 60.000 0.00 0.00 38.05 3.62
788 789 1.143969 GGAATAGGACGCACGTTCCG 61.144 60.000 0.00 4.02 0.00 4.30
789 790 0.457337 GAATAGGACGCACGTTCCGT 60.457 55.000 10.42 10.42 42.36 4.69
790 791 0.037975 AATAGGACGCACGTTCCGTT 60.038 50.000 11.71 3.26 38.32 4.44
791 792 0.037975 ATAGGACGCACGTTCCGTTT 60.038 50.000 11.71 6.97 38.32 3.60
792 793 0.940519 TAGGACGCACGTTCCGTTTG 60.941 55.000 11.71 0.00 38.32 2.93
793 794 2.527867 GGACGCACGTTCCGTTTGT 61.528 57.895 11.71 0.00 38.32 2.83
794 795 1.214373 GGACGCACGTTCCGTTTGTA 61.214 55.000 11.71 0.00 38.32 2.41
795 796 0.111574 GACGCACGTTCCGTTTGTAC 60.112 55.000 11.71 0.00 38.32 2.90
796 797 0.528249 ACGCACGTTCCGTTTGTACT 60.528 50.000 5.28 0.00 38.32 2.73
797 798 0.578211 CGCACGTTCCGTTTGTACTT 59.422 50.000 0.00 0.00 38.32 2.24
798 799 1.396316 CGCACGTTCCGTTTGTACTTC 60.396 52.381 0.00 0.00 38.32 3.01
799 800 1.862827 GCACGTTCCGTTTGTACTTCT 59.137 47.619 0.00 0.00 38.32 2.85
800 801 2.286025 GCACGTTCCGTTTGTACTTCTT 59.714 45.455 0.00 0.00 38.32 2.52
801 802 3.603173 GCACGTTCCGTTTGTACTTCTTC 60.603 47.826 0.00 0.00 38.32 2.87
802 803 3.552699 CACGTTCCGTTTGTACTTCTTCA 59.447 43.478 0.00 0.00 38.32 3.02
803 804 3.800506 ACGTTCCGTTTGTACTTCTTCAG 59.199 43.478 0.00 0.00 36.35 3.02
804 805 4.046462 CGTTCCGTTTGTACTTCTTCAGA 58.954 43.478 0.00 0.00 0.00 3.27
805 806 4.085210 CGTTCCGTTTGTACTTCTTCAGAC 60.085 45.833 0.00 0.00 0.00 3.51
806 807 4.931661 TCCGTTTGTACTTCTTCAGACT 57.068 40.909 0.00 0.00 0.00 3.24
807 808 4.617959 TCCGTTTGTACTTCTTCAGACTG 58.382 43.478 0.00 0.00 0.00 3.51
808 809 4.340097 TCCGTTTGTACTTCTTCAGACTGA 59.660 41.667 0.00 0.00 0.00 3.41
809 810 4.681942 CCGTTTGTACTTCTTCAGACTGAG 59.318 45.833 5.10 0.77 0.00 3.35
810 811 5.507482 CCGTTTGTACTTCTTCAGACTGAGA 60.507 44.000 5.10 3.17 0.00 3.27
811 812 5.399892 CGTTTGTACTTCTTCAGACTGAGAC 59.600 44.000 5.10 0.09 0.00 3.36
812 813 6.273825 GTTTGTACTTCTTCAGACTGAGACA 58.726 40.000 5.10 2.50 0.00 3.41
813 814 6.465439 TTGTACTTCTTCAGACTGAGACAA 57.535 37.500 5.10 7.81 0.00 3.18
814 815 6.078202 TGTACTTCTTCAGACTGAGACAAG 57.922 41.667 5.10 10.92 0.00 3.16
815 816 5.828328 TGTACTTCTTCAGACTGAGACAAGA 59.172 40.000 19.42 11.87 0.00 3.02
816 817 5.860941 ACTTCTTCAGACTGAGACAAGAA 57.139 39.130 19.42 16.83 33.21 2.52
817 818 6.227298 ACTTCTTCAGACTGAGACAAGAAA 57.773 37.500 19.42 6.77 33.72 2.52
818 819 6.825610 ACTTCTTCAGACTGAGACAAGAAAT 58.174 36.000 19.42 9.01 33.72 2.17
819 820 7.278875 ACTTCTTCAGACTGAGACAAGAAATT 58.721 34.615 19.42 8.72 33.72 1.82
820 821 7.226325 ACTTCTTCAGACTGAGACAAGAAATTG 59.774 37.037 19.42 11.26 33.72 2.32
821 822 6.820335 TCTTCAGACTGAGACAAGAAATTGA 58.180 36.000 5.10 0.00 0.00 2.57
822 823 6.703607 TCTTCAGACTGAGACAAGAAATTGAC 59.296 38.462 5.10 0.00 0.00 3.18
823 824 5.917462 TCAGACTGAGACAAGAAATTGACA 58.083 37.500 0.00 0.00 0.00 3.58
824 825 5.755375 TCAGACTGAGACAAGAAATTGACAC 59.245 40.000 0.00 0.00 0.00 3.67
825 826 5.525012 CAGACTGAGACAAGAAATTGACACA 59.475 40.000 0.00 0.00 0.00 3.72
826 827 6.037500 CAGACTGAGACAAGAAATTGACACAA 59.962 38.462 0.00 0.00 0.00 3.33
827 828 6.259608 AGACTGAGACAAGAAATTGACACAAG 59.740 38.462 0.00 0.00 0.00 3.16
828 829 6.115446 ACTGAGACAAGAAATTGACACAAGA 58.885 36.000 0.00 0.00 0.00 3.02
829 830 6.599244 ACTGAGACAAGAAATTGACACAAGAA 59.401 34.615 0.00 0.00 0.00 2.52
830 831 7.121168 ACTGAGACAAGAAATTGACACAAGAAA 59.879 33.333 0.00 0.00 0.00 2.52
831 832 7.999679 TGAGACAAGAAATTGACACAAGAAAT 58.000 30.769 0.00 0.00 0.00 2.17
832 833 8.469200 TGAGACAAGAAATTGACACAAGAAATT 58.531 29.630 0.00 0.00 0.00 1.82
833 834 8.638685 AGACAAGAAATTGACACAAGAAATTG 57.361 30.769 0.00 0.00 0.00 2.32
834 835 8.469200 AGACAAGAAATTGACACAAGAAATTGA 58.531 29.630 0.00 0.00 0.00 2.57
835 836 9.086336 GACAAGAAATTGACACAAGAAATTGAA 57.914 29.630 0.00 0.00 0.00 2.69
836 837 9.434420 ACAAGAAATTGACACAAGAAATTGAAA 57.566 25.926 0.00 0.00 0.00 2.69
839 840 9.820725 AGAAATTGACACAAGAAATTGAAATGA 57.179 25.926 0.00 0.00 0.00 2.57
842 843 9.767228 AATTGACACAAGAAATTGAAATGATGA 57.233 25.926 0.00 0.00 0.00 2.92
843 844 9.938280 ATTGACACAAGAAATTGAAATGATGAT 57.062 25.926 0.00 0.00 0.00 2.45
844 845 8.975410 TGACACAAGAAATTGAAATGATGATC 57.025 30.769 0.00 0.00 0.00 2.92
845 846 8.799367 TGACACAAGAAATTGAAATGATGATCT 58.201 29.630 0.00 0.00 0.00 2.75
846 847 9.635520 GACACAAGAAATTGAAATGATGATCTT 57.364 29.630 0.00 0.00 0.00 2.40
852 853 9.798994 AGAAATTGAAATGATGATCTTAACAGC 57.201 29.630 0.00 0.00 0.00 4.40
853 854 8.624701 AAATTGAAATGATGATCTTAACAGCG 57.375 30.769 0.00 0.00 0.00 5.18
854 855 5.160699 TGAAATGATGATCTTAACAGCGC 57.839 39.130 0.00 0.00 0.00 5.92
855 856 4.877823 TGAAATGATGATCTTAACAGCGCT 59.122 37.500 2.64 2.64 0.00 5.92
856 857 4.808077 AATGATGATCTTAACAGCGCTG 57.192 40.909 34.89 34.89 0.00 5.18
858 859 2.931969 TGATGATCTTAACAGCGCTGTG 59.068 45.455 41.21 28.77 44.13 3.66
859 860 1.078709 TGATCTTAACAGCGCTGTGC 58.921 50.000 41.21 24.90 44.13 4.57
868 869 4.030452 GCGCTGTGCTTGTGGTCC 62.030 66.667 5.84 0.00 41.73 4.46
869 870 2.281070 CGCTGTGCTTGTGGTCCT 60.281 61.111 0.00 0.00 0.00 3.85
870 871 1.893808 CGCTGTGCTTGTGGTCCTT 60.894 57.895 0.00 0.00 0.00 3.36
871 872 1.447317 CGCTGTGCTTGTGGTCCTTT 61.447 55.000 0.00 0.00 0.00 3.11
872 873 0.746659 GCTGTGCTTGTGGTCCTTTT 59.253 50.000 0.00 0.00 0.00 2.27
873 874 1.136891 GCTGTGCTTGTGGTCCTTTTT 59.863 47.619 0.00 0.00 0.00 1.94
891 892 3.472283 TTTTCAAGTGTACGGCAGGTA 57.528 42.857 0.00 0.00 0.00 3.08
921 922 4.295201 TGTAAGGCCCATACAGAGTATGT 58.705 43.478 13.54 0.00 46.45 2.29
927 928 3.071602 GCCCATACAGAGTATGTGTCCAT 59.928 47.826 14.11 0.00 38.85 3.41
929 930 5.567623 GCCCATACAGAGTATGTGTCCATAG 60.568 48.000 14.11 0.00 38.85 2.23
937 938 4.718961 AGTATGTGTCCATAGAATTGCCC 58.281 43.478 0.00 0.00 34.25 5.36
939 940 1.308998 GTGTCCATAGAATTGCCCGG 58.691 55.000 0.00 0.00 0.00 5.73
941 942 1.150536 TCCATAGAATTGCCCGGCC 59.849 57.895 7.03 0.00 0.00 6.13
971 972 2.356125 CCCAACAAACTCCGATCATCCT 60.356 50.000 0.00 0.00 0.00 3.24
987 988 1.810853 CCTGTGACGCGCATGATCA 60.811 57.895 5.73 0.00 0.00 2.92
1105 1106 2.413765 CGGCTACGCTCTTCCTCC 59.586 66.667 0.00 0.00 0.00 4.30
1350 1351 3.753434 CGCGTCCTCTGCCTCACT 61.753 66.667 0.00 0.00 0.00 3.41
1770 1837 7.660208 TCTGAACCAGTGTTAAAGTAATTCTCC 59.340 37.037 0.00 0.00 33.97 3.71
1778 1845 9.220767 AGTGTTAAAGTAATTCTCCTGTTCATC 57.779 33.333 0.00 0.00 0.00 2.92
1793 1860 6.096705 TCCTGTTCATCATGTTGTTTCTGTTT 59.903 34.615 3.76 0.00 0.00 2.83
1972 2039 4.024048 TGCTGTGCTTGTTTTTCTAGCTAC 60.024 41.667 0.00 0.00 43.33 3.58
1997 2064 7.088272 CGACCATACGAATTAGGATCAACATA 58.912 38.462 0.00 0.00 35.09 2.29
2079 2151 3.895232 TTGCAAACTTGTGGGCTTTTA 57.105 38.095 0.00 0.00 0.00 1.52
2086 2158 6.145534 GCAAACTTGTGGGCTTTTAATAGTTC 59.854 38.462 0.00 0.00 0.00 3.01
2087 2159 7.433680 CAAACTTGTGGGCTTTTAATAGTTCT 58.566 34.615 0.00 0.00 0.00 3.01
2088 2160 7.597288 AACTTGTGGGCTTTTAATAGTTCTT 57.403 32.000 0.00 0.00 0.00 2.52
2158 2230 9.107177 ACAGAAATGTGTGAAGAAGATATGATC 57.893 33.333 0.00 0.00 0.00 2.92
2193 2268 7.766278 ACTGTACAAAATAGAGTGCTTCTATGG 59.234 37.037 10.71 7.49 46.19 2.74
2194 2269 7.620880 TGTACAAAATAGAGTGCTTCTATGGT 58.379 34.615 10.71 11.29 46.19 3.55
2264 2342 2.036890 AGGACTACTCGGCCGGTT 59.963 61.111 27.83 15.24 0.00 4.44
2267 2345 0.738762 GGACTACTCGGCCGGTTTTC 60.739 60.000 27.83 18.78 0.00 2.29
2366 2445 1.250328 ACCCATGCACACACTTCATG 58.750 50.000 0.00 0.00 37.81 3.07
2367 2446 1.250328 CCCATGCACACACTTCATGT 58.750 50.000 0.00 0.00 44.81 3.21
2368 2447 2.224744 ACCCATGCACACACTTCATGTA 60.225 45.455 0.00 0.00 40.64 2.29
2369 2448 2.162208 CCCATGCACACACTTCATGTAC 59.838 50.000 0.00 0.00 40.64 2.90
2370 2449 2.813172 CCATGCACACACTTCATGTACA 59.187 45.455 0.00 0.00 40.64 2.90
2371 2450 3.252944 CCATGCACACACTTCATGTACAA 59.747 43.478 0.00 0.00 40.64 2.41
2410 2489 4.409247 ACTTGTCTGAAAACTACCAGGTCT 59.591 41.667 0.00 0.00 0.00 3.85
2422 2501 2.834113 ACCAGGTCTAGTGCCATAGTT 58.166 47.619 8.39 0.00 0.00 2.24
2431 2510 5.014202 TCTAGTGCCATAGTTGTGTACTCA 58.986 41.667 0.00 0.00 38.33 3.41
2443 2522 1.112113 TGTACTCATCTCCTTCGCCC 58.888 55.000 0.00 0.00 0.00 6.13
2449 2528 1.682684 ATCTCCTTCGCCCGACTGT 60.683 57.895 0.00 0.00 0.00 3.55
2468 2547 3.826157 CTGTCTGGACTCTGAAGAGAAGT 59.174 47.826 14.20 0.00 44.74 3.01
2500 2584 1.207089 CGTGCATCCTAACCCTCAGAA 59.793 52.381 0.00 0.00 0.00 3.02
2501 2585 2.354704 CGTGCATCCTAACCCTCAGAAA 60.355 50.000 0.00 0.00 0.00 2.52
2564 2648 1.418908 ATCATCATCCCCACCCGGAC 61.419 60.000 0.73 0.00 33.77 4.79
2567 2651 3.797353 CATCCCCACCCGGACCTG 61.797 72.222 0.73 0.00 33.77 4.00
2589 2673 1.029947 CGGCGCCCAAATCCTAAACT 61.030 55.000 23.46 0.00 0.00 2.66
2591 2675 1.548719 GGCGCCCAAATCCTAAACTTT 59.451 47.619 18.11 0.00 0.00 2.66
2682 2766 0.533032 GCGGACTTGGTAGCTTCTCT 59.467 55.000 0.00 0.00 0.00 3.10
2690 2774 2.244695 TGGTAGCTTCTCTTTCACGGA 58.755 47.619 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.121948 CTCCAACCTCCCTCATCATCA 58.878 52.381 0.00 0.00 0.00 3.07
1 2 2.402564 TCTCCAACCTCCCTCATCATC 58.597 52.381 0.00 0.00 0.00 2.92
2 3 2.575921 TCTCCAACCTCCCTCATCAT 57.424 50.000 0.00 0.00 0.00 2.45
3 4 2.191400 CTTCTCCAACCTCCCTCATCA 58.809 52.381 0.00 0.00 0.00 3.07
4 5 1.488393 CCTTCTCCAACCTCCCTCATC 59.512 57.143 0.00 0.00 0.00 2.92
5 6 1.081174 TCCTTCTCCAACCTCCCTCAT 59.919 52.381 0.00 0.00 0.00 2.90
6 7 0.491823 TCCTTCTCCAACCTCCCTCA 59.508 55.000 0.00 0.00 0.00 3.86
7 8 1.557371 CTTCCTTCTCCAACCTCCCTC 59.443 57.143 0.00 0.00 0.00 4.30
8 9 1.662686 CTTCCTTCTCCAACCTCCCT 58.337 55.000 0.00 0.00 0.00 4.20
9 10 0.034960 GCTTCCTTCTCCAACCTCCC 60.035 60.000 0.00 0.00 0.00 4.30
10 11 0.693049 TGCTTCCTTCTCCAACCTCC 59.307 55.000 0.00 0.00 0.00 4.30
11 12 2.026822 TGATGCTTCCTTCTCCAACCTC 60.027 50.000 0.00 0.00 0.00 3.85
12 13 1.988107 TGATGCTTCCTTCTCCAACCT 59.012 47.619 0.00 0.00 0.00 3.50
13 14 2.087646 GTGATGCTTCCTTCTCCAACC 58.912 52.381 0.00 0.00 0.00 3.77
14 15 2.783135 TGTGATGCTTCCTTCTCCAAC 58.217 47.619 0.00 0.00 0.00 3.77
15 16 3.726557 ATGTGATGCTTCCTTCTCCAA 57.273 42.857 0.00 0.00 0.00 3.53
16 17 3.135348 CCTATGTGATGCTTCCTTCTCCA 59.865 47.826 0.00 0.00 0.00 3.86
17 18 3.495806 CCCTATGTGATGCTTCCTTCTCC 60.496 52.174 0.00 0.00 0.00 3.71
18 19 3.737850 CCCTATGTGATGCTTCCTTCTC 58.262 50.000 0.00 0.00 0.00 2.87
19 20 2.158696 GCCCTATGTGATGCTTCCTTCT 60.159 50.000 0.00 0.00 0.00 2.85
20 21 2.225467 GCCCTATGTGATGCTTCCTTC 58.775 52.381 0.00 0.00 0.00 3.46
21 22 1.133668 GGCCCTATGTGATGCTTCCTT 60.134 52.381 0.00 0.00 0.00 3.36
22 23 0.475906 GGCCCTATGTGATGCTTCCT 59.524 55.000 0.00 0.00 0.00 3.36
23 24 0.183492 TGGCCCTATGTGATGCTTCC 59.817 55.000 0.00 0.00 0.00 3.46
24 25 2.157738 GATGGCCCTATGTGATGCTTC 58.842 52.381 0.00 0.00 0.00 3.86
25 26 1.202976 GGATGGCCCTATGTGATGCTT 60.203 52.381 0.00 0.00 0.00 3.91
26 27 0.403271 GGATGGCCCTATGTGATGCT 59.597 55.000 0.00 0.00 0.00 3.79
27 28 2.952714 GGATGGCCCTATGTGATGC 58.047 57.895 0.00 0.00 0.00 3.91
38 39 4.828296 CTGCAGTGGGGGATGGCC 62.828 72.222 5.25 0.00 0.00 5.36
39 40 3.590466 AACTGCAGTGGGGGATGGC 62.590 63.158 22.49 0.00 0.00 4.40
40 41 0.542702 AAAACTGCAGTGGGGGATGG 60.543 55.000 22.49 0.00 0.00 3.51
41 42 0.604578 CAAAACTGCAGTGGGGGATG 59.395 55.000 22.49 9.48 0.00 3.51
42 43 0.188342 ACAAAACTGCAGTGGGGGAT 59.812 50.000 22.49 0.00 0.00 3.85
43 44 0.847373 TACAAAACTGCAGTGGGGGA 59.153 50.000 22.49 6.41 0.00 4.81
44 45 1.545582 CATACAAAACTGCAGTGGGGG 59.454 52.381 22.49 12.92 0.00 5.40
45 46 2.228822 GACATACAAAACTGCAGTGGGG 59.771 50.000 22.49 14.78 0.00 4.96
46 47 2.095768 CGACATACAAAACTGCAGTGGG 60.096 50.000 22.49 15.15 0.00 4.61
47 48 2.665519 GCGACATACAAAACTGCAGTGG 60.666 50.000 22.49 15.53 0.00 4.00
48 49 2.574322 GCGACATACAAAACTGCAGTG 58.426 47.619 22.49 10.93 0.00 3.66
49 50 1.194547 CGCGACATACAAAACTGCAGT 59.805 47.619 15.25 15.25 0.00 4.40
50 51 1.194547 ACGCGACATACAAAACTGCAG 59.805 47.619 15.93 13.48 0.00 4.41
51 52 1.222300 ACGCGACATACAAAACTGCA 58.778 45.000 15.93 0.00 0.00 4.41
52 53 2.309898 AACGCGACATACAAAACTGC 57.690 45.000 15.93 0.00 0.00 4.40
53 54 5.114423 GGTTAAAACGCGACATACAAAACTG 59.886 40.000 15.93 0.00 0.00 3.16
54 55 5.207033 GGTTAAAACGCGACATACAAAACT 58.793 37.500 15.93 0.00 0.00 2.66
55 56 4.085549 CGGTTAAAACGCGACATACAAAAC 59.914 41.667 15.93 5.80 0.00 2.43
56 57 4.209870 CGGTTAAAACGCGACATACAAAA 58.790 39.130 15.93 0.00 0.00 2.44
57 58 3.247173 ACGGTTAAAACGCGACATACAAA 59.753 39.130 15.93 0.00 34.00 2.83
58 59 2.799412 ACGGTTAAAACGCGACATACAA 59.201 40.909 15.93 0.00 34.00 2.41
59 60 2.402305 ACGGTTAAAACGCGACATACA 58.598 42.857 15.93 0.00 34.00 2.29
60 61 3.438373 AACGGTTAAAACGCGACATAC 57.562 42.857 15.93 3.74 34.00 2.39
61 62 4.453339 GAAAACGGTTAAAACGCGACATA 58.547 39.130 15.93 0.00 34.00 2.29
62 63 3.290748 GAAAACGGTTAAAACGCGACAT 58.709 40.909 15.93 0.00 34.00 3.06
63 64 2.538535 GGAAAACGGTTAAAACGCGACA 60.539 45.455 15.93 0.00 34.00 4.35
64 65 2.036217 GGAAAACGGTTAAAACGCGAC 58.964 47.619 15.93 0.00 34.00 5.19
65 66 1.939255 AGGAAAACGGTTAAAACGCGA 59.061 42.857 15.93 0.00 34.00 5.87
66 67 2.388106 AGGAAAACGGTTAAAACGCG 57.612 45.000 3.53 3.53 34.00 6.01
67 68 4.259890 CCAAAAGGAAAACGGTTAAAACGC 60.260 41.667 0.00 0.00 34.00 4.84
68 69 4.268167 CCCAAAAGGAAAACGGTTAAAACG 59.732 41.667 0.00 0.00 38.24 3.60
69 70 5.177326 ACCCAAAAGGAAAACGGTTAAAAC 58.823 37.500 0.00 0.00 39.89 2.43
70 71 5.417754 ACCCAAAAGGAAAACGGTTAAAA 57.582 34.783 0.00 0.00 39.89 1.52
71 72 5.417754 AACCCAAAAGGAAAACGGTTAAA 57.582 34.783 0.00 0.00 39.89 1.52
72 73 5.046807 TGAAACCCAAAAGGAAAACGGTTAA 60.047 36.000 0.00 0.00 39.89 2.01
73 74 4.465305 TGAAACCCAAAAGGAAAACGGTTA 59.535 37.500 0.00 0.00 39.89 2.85
74 75 3.261137 TGAAACCCAAAAGGAAAACGGTT 59.739 39.130 0.00 0.00 39.89 4.44
75 76 2.832733 TGAAACCCAAAAGGAAAACGGT 59.167 40.909 0.00 0.00 39.89 4.83
76 77 3.528597 TGAAACCCAAAAGGAAAACGG 57.471 42.857 0.00 0.00 39.89 4.44
77 78 6.429791 AAATTGAAACCCAAAAGGAAAACG 57.570 33.333 0.00 0.00 38.43 3.60
78 79 8.050778 AGAAAATTGAAACCCAAAAGGAAAAC 57.949 30.769 0.00 0.00 38.43 2.43
79 80 8.518702 CAAGAAAATTGAAACCCAAAAGGAAAA 58.481 29.630 0.00 0.00 38.43 2.29
80 81 7.121907 CCAAGAAAATTGAAACCCAAAAGGAAA 59.878 33.333 0.00 0.00 38.43 3.13
81 82 6.601217 CCAAGAAAATTGAAACCCAAAAGGAA 59.399 34.615 0.00 0.00 38.43 3.36
82 83 6.118852 CCAAGAAAATTGAAACCCAAAAGGA 58.881 36.000 0.00 0.00 38.43 3.36
83 84 5.221028 GCCAAGAAAATTGAAACCCAAAAGG 60.221 40.000 0.00 0.00 38.43 3.11
84 85 5.589855 AGCCAAGAAAATTGAAACCCAAAAG 59.410 36.000 0.00 0.00 38.43 2.27
85 86 5.504853 AGCCAAGAAAATTGAAACCCAAAA 58.495 33.333 0.00 0.00 38.43 2.44
86 87 5.104569 AGAGCCAAGAAAATTGAAACCCAAA 60.105 36.000 0.00 0.00 38.43 3.28
87 88 4.408596 AGAGCCAAGAAAATTGAAACCCAA 59.591 37.500 0.00 0.00 39.41 4.12
88 89 3.966665 AGAGCCAAGAAAATTGAAACCCA 59.033 39.130 0.00 0.00 0.00 4.51
89 90 4.281941 AGAGAGCCAAGAAAATTGAAACCC 59.718 41.667 0.00 0.00 0.00 4.11
90 91 5.459536 AGAGAGCCAAGAAAATTGAAACC 57.540 39.130 0.00 0.00 0.00 3.27
91 92 6.640092 CAGAAGAGAGCCAAGAAAATTGAAAC 59.360 38.462 0.00 0.00 0.00 2.78
92 93 6.322201 ACAGAAGAGAGCCAAGAAAATTGAAA 59.678 34.615 0.00 0.00 0.00 2.69
93 94 5.829924 ACAGAAGAGAGCCAAGAAAATTGAA 59.170 36.000 0.00 0.00 0.00 2.69
94 95 5.380043 ACAGAAGAGAGCCAAGAAAATTGA 58.620 37.500 0.00 0.00 0.00 2.57
95 96 5.702349 ACAGAAGAGAGCCAAGAAAATTG 57.298 39.130 0.00 0.00 0.00 2.32
96 97 6.721704 AAACAGAAGAGAGCCAAGAAAATT 57.278 33.333 0.00 0.00 0.00 1.82
97 98 6.721704 AAAACAGAAGAGAGCCAAGAAAAT 57.278 33.333 0.00 0.00 0.00 1.82
98 99 6.530019 AAAAACAGAAGAGAGCCAAGAAAA 57.470 33.333 0.00 0.00 0.00 2.29
164 165 9.865321 GTGTATGGAAAAAGTAGACACATACTA 57.135 33.333 0.00 0.00 39.67 1.82
165 166 8.372459 TGTGTATGGAAAAAGTAGACACATACT 58.628 33.333 0.00 0.00 40.39 2.12
166 167 8.542497 TGTGTATGGAAAAAGTAGACACATAC 57.458 34.615 0.00 0.00 40.39 2.39
169 170 7.500892 ACAATGTGTATGGAAAAAGTAGACACA 59.499 33.333 7.33 7.33 46.75 3.72
170 171 7.871853 ACAATGTGTATGGAAAAAGTAGACAC 58.128 34.615 0.00 0.00 36.97 3.67
171 172 9.733556 ATACAATGTGTATGGAAAAAGTAGACA 57.266 29.630 0.00 0.00 41.62 3.41
227 228 9.416794 TGTATTTGCGAAATGTTAAACATGAAT 57.583 25.926 0.00 0.00 37.97 2.57
228 229 8.803201 TGTATTTGCGAAATGTTAAACATGAA 57.197 26.923 0.00 0.00 37.97 2.57
229 230 8.858186 CATGTATTTGCGAAATGTTAAACATGA 58.142 29.630 17.95 0.00 41.18 3.07
230 231 8.109391 CCATGTATTTGCGAAATGTTAAACATG 58.891 33.333 16.97 16.97 37.97 3.21
231 232 7.816995 ACCATGTATTTGCGAAATGTTAAACAT 59.183 29.630 0.00 0.00 41.31 2.71
232 233 7.148641 ACCATGTATTTGCGAAATGTTAAACA 58.851 30.769 0.00 0.00 32.38 2.83
233 234 7.575332 ACCATGTATTTGCGAAATGTTAAAC 57.425 32.000 0.00 0.00 32.38 2.01
234 235 9.130312 GTTACCATGTATTTGCGAAATGTTAAA 57.870 29.630 0.00 0.00 32.38 1.52
235 236 8.297426 TGTTACCATGTATTTGCGAAATGTTAA 58.703 29.630 0.00 0.00 32.38 2.01
236 237 7.817641 TGTTACCATGTATTTGCGAAATGTTA 58.182 30.769 0.00 0.00 32.38 2.41
237 238 6.682746 TGTTACCATGTATTTGCGAAATGTT 58.317 32.000 0.00 0.00 32.38 2.71
238 239 6.260870 TGTTACCATGTATTTGCGAAATGT 57.739 33.333 0.00 0.00 32.38 2.71
239 240 7.754069 AATGTTACCATGTATTTGCGAAATG 57.246 32.000 0.00 0.00 32.38 2.32
240 241 8.770438 AAAATGTTACCATGTATTTGCGAAAT 57.230 26.923 0.00 0.00 34.90 2.17
241 242 8.594881 AAAAATGTTACCATGTATTTGCGAAA 57.405 26.923 0.00 0.00 0.00 3.46
296 297 9.751542 ACGAAAAATGTACAATGTTTATGGAAA 57.248 25.926 0.00 0.00 0.00 3.13
325 326 8.973378 CCGTGTGTAAAATAATGTTTCAAATGT 58.027 29.630 0.00 0.00 0.00 2.71
326 327 8.973378 ACCGTGTGTAAAATAATGTTTCAAATG 58.027 29.630 0.00 0.00 0.00 2.32
327 328 9.535878 AACCGTGTGTAAAATAATGTTTCAAAT 57.464 25.926 0.00 0.00 0.00 2.32
328 329 8.928270 AACCGTGTGTAAAATAATGTTTCAAA 57.072 26.923 0.00 0.00 0.00 2.69
330 331 9.448294 GTTAACCGTGTGTAAAATAATGTTTCA 57.552 29.630 0.00 0.00 0.00 2.69
331 332 9.448294 TGTTAACCGTGTGTAAAATAATGTTTC 57.552 29.630 2.48 0.00 0.00 2.78
332 333 9.968870 ATGTTAACCGTGTGTAAAATAATGTTT 57.031 25.926 2.48 0.00 0.00 2.83
333 334 9.968870 AATGTTAACCGTGTGTAAAATAATGTT 57.031 25.926 2.48 0.00 0.00 2.71
334 335 9.968870 AAATGTTAACCGTGTGTAAAATAATGT 57.031 25.926 2.48 0.00 0.00 2.71
359 360 7.875316 TGTTCGAGAATGTTTGTTTCAAAAA 57.125 28.000 0.00 0.00 0.00 1.94
360 361 8.472683 AATGTTCGAGAATGTTTGTTTCAAAA 57.527 26.923 0.00 0.00 0.00 2.44
361 362 8.472683 AAATGTTCGAGAATGTTTGTTTCAAA 57.527 26.923 0.00 0.00 0.00 2.69
362 363 8.472683 AAAATGTTCGAGAATGTTTGTTTCAA 57.527 26.923 0.00 0.00 0.00 2.69
363 364 8.472683 AAAAATGTTCGAGAATGTTTGTTTCA 57.527 26.923 0.00 0.00 0.00 2.69
438 439 9.719355 TCACTTAAAGAAATACTTCAGCATGTA 57.281 29.630 0.00 0.00 37.93 2.29
439 440 8.621532 TCACTTAAAGAAATACTTCAGCATGT 57.378 30.769 0.00 0.00 37.93 3.21
520 521 9.955208 ACGTGTTTCTAATATATATTCGTGACA 57.045 29.630 11.28 11.01 0.00 3.58
537 538 9.145865 ACATTTTAAAAATGTTCACGTGTTTCT 57.854 25.926 16.51 0.00 37.58 2.52
541 542 9.355215 TGTTACATTTTAAAAATGTTCACGTGT 57.645 25.926 16.51 10.51 40.87 4.49
542 543 9.613153 GTGTTACATTTTAAAAATGTTCACGTG 57.387 29.630 9.94 9.94 40.87 4.49
543 544 9.355215 TGTGTTACATTTTAAAAATGTTCACGT 57.645 25.926 22.86 0.00 41.41 4.49
581 582 9.959749 TGTGAAATTCAAGAAAATGGTTAGTAC 57.040 29.630 0.00 0.00 0.00 2.73
583 584 8.912988 TCTGTGAAATTCAAGAAAATGGTTAGT 58.087 29.630 0.00 0.00 0.00 2.24
584 585 9.185192 GTCTGTGAAATTCAAGAAAATGGTTAG 57.815 33.333 0.00 0.00 0.00 2.34
585 586 8.690884 TGTCTGTGAAATTCAAGAAAATGGTTA 58.309 29.630 0.00 0.00 0.00 2.85
586 587 7.555087 TGTCTGTGAAATTCAAGAAAATGGTT 58.445 30.769 0.00 0.00 0.00 3.67
587 588 7.111247 TGTCTGTGAAATTCAAGAAAATGGT 57.889 32.000 0.00 0.00 0.00 3.55
588 589 8.597662 AATGTCTGTGAAATTCAAGAAAATGG 57.402 30.769 0.00 0.00 0.00 3.16
666 667 9.683069 GTGACATTTAAAGAGAATTCATGTGTT 57.317 29.630 8.44 0.00 0.00 3.32
667 668 8.849168 TGTGACATTTAAAGAGAATTCATGTGT 58.151 29.630 8.44 1.21 0.00 3.72
668 669 9.681692 TTGTGACATTTAAAGAGAATTCATGTG 57.318 29.630 8.44 0.00 0.00 3.21
676 677 9.868277 AAACATGTTTGTGACATTTAAAGAGAA 57.132 25.926 22.71 0.00 46.80 2.87
677 678 9.868277 AAAACATGTTTGTGACATTTAAAGAGA 57.132 25.926 23.93 0.00 46.80 3.10
701 702 6.767456 AGATGTTTGATACCATTGGCAAAAA 58.233 32.000 3.01 1.31 32.71 1.94
702 703 6.357579 AGATGTTTGATACCATTGGCAAAA 57.642 33.333 3.01 0.00 32.71 2.44
703 704 5.999205 AGATGTTTGATACCATTGGCAAA 57.001 34.783 3.01 2.83 0.00 3.68
704 705 5.999205 AAGATGTTTGATACCATTGGCAA 57.001 34.783 0.68 0.68 0.00 4.52
705 706 5.999205 AAAGATGTTTGATACCATTGGCA 57.001 34.783 1.54 0.00 0.00 4.92
706 707 6.397272 TCAAAAGATGTTTGATACCATTGGC 58.603 36.000 1.54 0.00 33.90 4.52
707 708 8.252417 TGATCAAAAGATGTTTGATACCATTGG 58.748 33.333 12.89 0.00 45.88 3.16
708 709 9.811995 ATGATCAAAAGATGTTTGATACCATTG 57.188 29.630 12.89 0.00 45.88 2.82
730 731 9.450807 GCGTAAGAAAATTGTTAGCATAATGAT 57.549 29.630 0.00 0.00 43.02 2.45
731 732 8.673711 AGCGTAAGAAAATTGTTAGCATAATGA 58.326 29.630 0.00 0.00 43.02 2.57
732 733 8.736742 CAGCGTAAGAAAATTGTTAGCATAATG 58.263 33.333 0.00 0.00 43.02 1.90
733 734 7.432252 GCAGCGTAAGAAAATTGTTAGCATAAT 59.568 33.333 0.00 0.00 43.02 1.28
734 735 6.745450 GCAGCGTAAGAAAATTGTTAGCATAA 59.255 34.615 0.00 0.00 43.02 1.90
735 736 6.255215 GCAGCGTAAGAAAATTGTTAGCATA 58.745 36.000 0.00 0.00 43.02 3.14
736 737 5.095490 GCAGCGTAAGAAAATTGTTAGCAT 58.905 37.500 0.00 0.00 43.02 3.79
737 738 4.472286 GCAGCGTAAGAAAATTGTTAGCA 58.528 39.130 0.00 0.00 43.02 3.49
738 739 3.851969 GGCAGCGTAAGAAAATTGTTAGC 59.148 43.478 0.00 0.00 43.02 3.09
739 740 4.156008 AGGGCAGCGTAAGAAAATTGTTAG 59.844 41.667 0.00 0.00 43.02 2.34
740 741 4.076394 AGGGCAGCGTAAGAAAATTGTTA 58.924 39.130 0.00 0.00 43.02 2.41
741 742 2.890945 AGGGCAGCGTAAGAAAATTGTT 59.109 40.909 0.00 0.00 43.02 2.83
742 743 2.514803 AGGGCAGCGTAAGAAAATTGT 58.485 42.857 0.00 0.00 43.02 2.71
743 744 3.485216 CGTAGGGCAGCGTAAGAAAATTG 60.485 47.826 0.00 0.00 43.02 2.32
744 745 2.676342 CGTAGGGCAGCGTAAGAAAATT 59.324 45.455 0.00 0.00 43.02 1.82
745 746 2.277084 CGTAGGGCAGCGTAAGAAAAT 58.723 47.619 0.00 0.00 43.02 1.82
746 747 1.001181 ACGTAGGGCAGCGTAAGAAAA 59.999 47.619 0.00 0.00 39.72 2.29
747 748 0.604578 ACGTAGGGCAGCGTAAGAAA 59.395 50.000 0.00 0.00 39.72 2.52
748 749 0.108992 CACGTAGGGCAGCGTAAGAA 60.109 55.000 0.00 0.00 39.48 2.52
749 750 1.509463 CACGTAGGGCAGCGTAAGA 59.491 57.895 0.00 0.00 39.48 2.10
750 751 1.518572 CCACGTAGGGCAGCGTAAG 60.519 63.158 0.00 0.00 39.48 2.34
751 752 2.574929 CCACGTAGGGCAGCGTAA 59.425 61.111 0.00 0.00 39.48 3.18
760 761 0.672342 CGTCCTATTCCCCACGTAGG 59.328 60.000 0.00 0.00 37.03 3.18
761 762 0.031721 GCGTCCTATTCCCCACGTAG 59.968 60.000 0.00 0.00 34.69 3.51
762 763 0.683828 TGCGTCCTATTCCCCACGTA 60.684 55.000 0.00 0.00 34.69 3.57
763 764 1.985662 TGCGTCCTATTCCCCACGT 60.986 57.895 0.00 0.00 34.69 4.49
764 765 1.520787 GTGCGTCCTATTCCCCACG 60.521 63.158 0.00 0.00 35.32 4.94
765 766 1.520787 CGTGCGTCCTATTCCCCAC 60.521 63.158 0.00 0.00 0.00 4.61
766 767 1.546589 AACGTGCGTCCTATTCCCCA 61.547 55.000 0.00 0.00 0.00 4.96
767 768 0.808847 GAACGTGCGTCCTATTCCCC 60.809 60.000 0.00 0.00 0.00 4.81
768 769 0.808847 GGAACGTGCGTCCTATTCCC 60.809 60.000 0.00 0.00 34.01 3.97
769 770 2.674296 GGAACGTGCGTCCTATTCC 58.326 57.895 0.00 0.00 32.56 3.01
783 784 5.048507 AGTCTGAAGAAGTACAAACGGAAC 58.951 41.667 0.00 0.00 0.00 3.62
784 785 5.047847 CAGTCTGAAGAAGTACAAACGGAA 58.952 41.667 0.00 0.00 0.00 4.30
785 786 4.340097 TCAGTCTGAAGAAGTACAAACGGA 59.660 41.667 0.00 0.00 0.00 4.69
786 787 4.617959 TCAGTCTGAAGAAGTACAAACGG 58.382 43.478 0.00 0.00 0.00 4.44
787 788 5.399892 GTCTCAGTCTGAAGAAGTACAAACG 59.600 44.000 3.67 0.00 0.00 3.60
788 789 6.273825 TGTCTCAGTCTGAAGAAGTACAAAC 58.726 40.000 3.67 0.00 0.00 2.93
789 790 6.465439 TGTCTCAGTCTGAAGAAGTACAAA 57.535 37.500 3.67 0.00 0.00 2.83
790 791 6.321435 TCTTGTCTCAGTCTGAAGAAGTACAA 59.679 38.462 3.67 7.05 0.00 2.41
791 792 5.828328 TCTTGTCTCAGTCTGAAGAAGTACA 59.172 40.000 3.67 0.00 0.00 2.90
792 793 6.320494 TCTTGTCTCAGTCTGAAGAAGTAC 57.680 41.667 3.67 0.00 0.00 2.73
793 794 6.961360 TTCTTGTCTCAGTCTGAAGAAGTA 57.039 37.500 9.65 4.73 30.91 2.24
794 795 5.860941 TTCTTGTCTCAGTCTGAAGAAGT 57.139 39.130 9.65 0.00 30.91 3.01
795 796 7.440556 TCAATTTCTTGTCTCAGTCTGAAGAAG 59.559 37.037 12.34 12.17 34.88 2.85
796 797 7.225538 GTCAATTTCTTGTCTCAGTCTGAAGAA 59.774 37.037 9.65 9.65 33.87 2.52
797 798 6.703607 GTCAATTTCTTGTCTCAGTCTGAAGA 59.296 38.462 3.67 0.96 33.87 2.87
798 799 6.481313 TGTCAATTTCTTGTCTCAGTCTGAAG 59.519 38.462 3.67 0.00 33.87 3.02
799 800 6.258727 GTGTCAATTTCTTGTCTCAGTCTGAA 59.741 38.462 3.67 0.00 33.87 3.02
800 801 5.755375 GTGTCAATTTCTTGTCTCAGTCTGA 59.245 40.000 1.78 1.78 33.87 3.27
801 802 5.525012 TGTGTCAATTTCTTGTCTCAGTCTG 59.475 40.000 0.00 0.00 33.87 3.51
802 803 5.674525 TGTGTCAATTTCTTGTCTCAGTCT 58.325 37.500 0.00 0.00 33.87 3.24
803 804 5.991328 TGTGTCAATTTCTTGTCTCAGTC 57.009 39.130 0.00 0.00 33.87 3.51
804 805 6.115446 TCTTGTGTCAATTTCTTGTCTCAGT 58.885 36.000 0.00 0.00 33.87 3.41
805 806 6.609237 TCTTGTGTCAATTTCTTGTCTCAG 57.391 37.500 0.00 0.00 33.87 3.35
806 807 7.389803 TTTCTTGTGTCAATTTCTTGTCTCA 57.610 32.000 0.00 0.00 33.87 3.27
807 808 8.749499 CAATTTCTTGTGTCAATTTCTTGTCTC 58.251 33.333 0.00 0.00 33.87 3.36
808 809 8.469200 TCAATTTCTTGTGTCAATTTCTTGTCT 58.531 29.630 0.00 0.00 32.67 3.41
809 810 8.633075 TCAATTTCTTGTGTCAATTTCTTGTC 57.367 30.769 0.00 0.00 32.67 3.18
810 811 9.434420 TTTCAATTTCTTGTGTCAATTTCTTGT 57.566 25.926 0.00 0.00 32.67 3.16
813 814 9.820725 TCATTTCAATTTCTTGTGTCAATTTCT 57.179 25.926 0.00 0.00 33.87 2.52
816 817 9.767228 TCATCATTTCAATTTCTTGTGTCAATT 57.233 25.926 0.00 0.00 33.87 2.32
817 818 9.938280 ATCATCATTTCAATTTCTTGTGTCAAT 57.062 25.926 0.00 0.00 33.87 2.57
818 819 9.414295 GATCATCATTTCAATTTCTTGTGTCAA 57.586 29.630 0.00 0.00 33.87 3.18
819 820 8.799367 AGATCATCATTTCAATTTCTTGTGTCA 58.201 29.630 0.00 0.00 33.87 3.58
820 821 9.635520 AAGATCATCATTTCAATTTCTTGTGTC 57.364 29.630 0.00 0.00 33.87 3.67
826 827 9.798994 GCTGTTAAGATCATCATTTCAATTTCT 57.201 29.630 0.00 0.00 0.00 2.52
827 828 8.740369 CGCTGTTAAGATCATCATTTCAATTTC 58.260 33.333 0.00 0.00 0.00 2.17
828 829 7.221452 GCGCTGTTAAGATCATCATTTCAATTT 59.779 33.333 0.00 0.00 0.00 1.82
829 830 6.694411 GCGCTGTTAAGATCATCATTTCAATT 59.306 34.615 0.00 0.00 0.00 2.32
830 831 6.039047 AGCGCTGTTAAGATCATCATTTCAAT 59.961 34.615 10.39 0.00 0.00 2.57
831 832 5.355071 AGCGCTGTTAAGATCATCATTTCAA 59.645 36.000 10.39 0.00 0.00 2.69
832 833 4.877823 AGCGCTGTTAAGATCATCATTTCA 59.122 37.500 10.39 0.00 0.00 2.69
833 834 5.203370 CAGCGCTGTTAAGATCATCATTTC 58.797 41.667 29.24 0.00 0.00 2.17
834 835 4.637534 ACAGCGCTGTTAAGATCATCATTT 59.362 37.500 36.44 8.78 41.83 2.32
835 836 4.034858 CACAGCGCTGTTAAGATCATCATT 59.965 41.667 39.13 11.08 42.83 2.57
836 837 3.558829 CACAGCGCTGTTAAGATCATCAT 59.441 43.478 39.13 11.56 42.83 2.45
837 838 2.931969 CACAGCGCTGTTAAGATCATCA 59.068 45.455 39.13 0.00 42.83 3.07
838 839 2.286067 GCACAGCGCTGTTAAGATCATC 60.286 50.000 39.13 15.53 42.83 2.92
839 840 1.667724 GCACAGCGCTGTTAAGATCAT 59.332 47.619 39.13 13.18 42.83 2.45
840 841 1.078709 GCACAGCGCTGTTAAGATCA 58.921 50.000 39.13 0.00 42.83 2.92
841 842 3.885777 GCACAGCGCTGTTAAGATC 57.114 52.632 39.13 19.44 42.83 2.75
851 852 4.030452 GGACCACAAGCACAGCGC 62.030 66.667 0.00 0.00 42.91 5.92
852 853 1.447317 AAAGGACCACAAGCACAGCG 61.447 55.000 0.00 0.00 0.00 5.18
853 854 0.746659 AAAAGGACCACAAGCACAGC 59.253 50.000 0.00 0.00 0.00 4.40
870 871 2.645802 ACCTGCCGTACACTTGAAAAA 58.354 42.857 0.00 0.00 0.00 1.94
871 872 2.335316 ACCTGCCGTACACTTGAAAA 57.665 45.000 0.00 0.00 0.00 2.29
872 873 3.244284 ACATACCTGCCGTACACTTGAAA 60.244 43.478 0.00 0.00 0.00 2.69
873 874 2.300723 ACATACCTGCCGTACACTTGAA 59.699 45.455 0.00 0.00 0.00 2.69
874 875 1.897133 ACATACCTGCCGTACACTTGA 59.103 47.619 0.00 0.00 0.00 3.02
875 876 2.380084 ACATACCTGCCGTACACTTG 57.620 50.000 0.00 0.00 0.00 3.16
876 877 2.300723 TGAACATACCTGCCGTACACTT 59.699 45.455 0.00 0.00 0.00 3.16
877 878 1.897133 TGAACATACCTGCCGTACACT 59.103 47.619 0.00 0.00 0.00 3.55
878 879 2.373540 TGAACATACCTGCCGTACAC 57.626 50.000 0.00 0.00 0.00 2.90
879 880 3.266636 CAATGAACATACCTGCCGTACA 58.733 45.455 0.00 0.00 0.00 2.90
880 881 3.267483 ACAATGAACATACCTGCCGTAC 58.733 45.455 0.00 0.00 0.00 3.67
881 882 3.620427 ACAATGAACATACCTGCCGTA 57.380 42.857 0.00 0.00 0.00 4.02
882 883 2.489938 ACAATGAACATACCTGCCGT 57.510 45.000 0.00 0.00 0.00 5.68
883 884 3.312421 CCTTACAATGAACATACCTGCCG 59.688 47.826 0.00 0.00 0.00 5.69
884 885 3.066760 GCCTTACAATGAACATACCTGCC 59.933 47.826 0.00 0.00 0.00 4.85
885 886 3.066760 GGCCTTACAATGAACATACCTGC 59.933 47.826 0.00 0.00 0.00 4.85
886 887 3.632145 GGGCCTTACAATGAACATACCTG 59.368 47.826 0.84 0.00 0.00 4.00
887 888 3.268334 TGGGCCTTACAATGAACATACCT 59.732 43.478 4.53 0.00 0.00 3.08
888 889 3.626930 TGGGCCTTACAATGAACATACC 58.373 45.455 4.53 0.00 0.00 2.73
891 892 4.865905 TGTATGGGCCTTACAATGAACAT 58.134 39.130 25.17 0.12 0.00 2.71
921 922 0.465460 GCCGGGCAATTCTATGGACA 60.465 55.000 15.62 0.00 0.00 4.02
927 928 2.028125 CTCTCGGCCGGGCAATTCTA 62.028 60.000 29.19 1.93 0.00 2.10
929 930 2.869503 TTCTCTCGGCCGGGCAATTC 62.870 60.000 29.19 1.70 0.00 2.17
937 938 1.521681 GTTGGGATTCTCTCGGCCG 60.522 63.158 22.12 22.12 0.00 6.13
939 940 1.468914 GTTTGTTGGGATTCTCTCGGC 59.531 52.381 0.00 0.00 0.00 5.54
941 942 3.003480 GGAGTTTGTTGGGATTCTCTCG 58.997 50.000 0.00 0.00 0.00 4.04
971 972 0.871057 TTTTGATCATGCGCGTCACA 59.129 45.000 8.43 0.00 0.00 3.58
1092 1093 1.284198 AGGTACAGGAGGAAGAGCGTA 59.716 52.381 0.00 0.00 0.00 4.42
1105 1106 2.181021 GTGCCGGACGAGGTACAG 59.819 66.667 5.05 0.00 44.72 2.74
1270 1271 3.827898 GGAGGACGCTAGCGCAGT 61.828 66.667 35.63 20.46 44.19 4.40
1325 1326 4.049817 AGAGGACGCGGGAGGAGT 62.050 66.667 12.47 0.00 0.00 3.85
1458 1459 2.364317 TCAGAGAAGGGGAGGCGG 60.364 66.667 0.00 0.00 0.00 6.13
1770 1837 8.344831 TCTAAACAGAAACAACATGATGAACAG 58.655 33.333 10.29 0.90 0.00 3.16
1793 1860 9.587772 GCTCAGTAAAATCTAGTGTTTGATCTA 57.412 33.333 0.00 0.00 0.00 1.98
1815 1882 4.102054 TCTGATGCAGAAATCCATAGCTCA 59.898 41.667 0.00 0.00 37.57 4.26
1842 1909 8.988064 ACTATTGATCTACACAGTTACAGTTG 57.012 34.615 0.00 0.00 0.00 3.16
1972 2039 5.286438 TGTTGATCCTAATTCGTATGGTCG 58.714 41.667 0.00 0.00 0.00 4.79
2036 2105 3.539253 GCAAAGCGGTGCATATGAG 57.461 52.632 6.97 0.00 44.29 2.90
2055 2126 3.280197 AGCCCACAAGTTTGCAAAATT 57.720 38.095 18.47 18.47 0.00 1.82
2237 2315 3.380637 GCCGAGTAGTCCTCTAATCACAA 59.619 47.826 4.18 0.00 40.08 3.33
2287 2366 8.241367 CCTGGATAACAATGTTTGTAACTAACC 58.759 37.037 3.17 0.00 44.59 2.85
2305 2384 3.526899 TCACCTCTTTGGACCTGGATAA 58.473 45.455 0.00 0.00 39.71 1.75
2354 2433 6.418956 GTTGTACTTGTACATGAAGTGTGTG 58.581 40.000 15.13 0.00 42.24 3.82
2366 2445 3.002965 GTGCTTGTGGGTTGTACTTGTAC 59.997 47.826 4.14 4.14 0.00 2.90
2367 2446 3.118186 AGTGCTTGTGGGTTGTACTTGTA 60.118 43.478 0.00 0.00 0.00 2.41
2368 2447 2.021457 GTGCTTGTGGGTTGTACTTGT 58.979 47.619 0.00 0.00 0.00 3.16
2369 2448 2.297701 AGTGCTTGTGGGTTGTACTTG 58.702 47.619 0.00 0.00 0.00 3.16
2370 2449 2.687935 CAAGTGCTTGTGGGTTGTACTT 59.312 45.455 3.91 0.00 37.17 2.24
2371 2450 2.297701 CAAGTGCTTGTGGGTTGTACT 58.702 47.619 3.91 0.00 35.92 2.73
2410 2489 5.656859 AGATGAGTACACAACTATGGCACTA 59.343 40.000 1.26 0.00 39.07 2.74
2422 2501 1.476891 GGCGAAGGAGATGAGTACACA 59.523 52.381 0.00 0.00 0.00 3.72
2431 2510 1.668101 GACAGTCGGGCGAAGGAGAT 61.668 60.000 0.00 0.00 0.00 2.75
2443 2522 2.155279 TCTTCAGAGTCCAGACAGTCG 58.845 52.381 0.00 0.00 0.00 4.18
2449 2528 4.767928 GGTAACTTCTCTTCAGAGTCCAGA 59.232 45.833 3.73 0.00 42.60 3.86
2698 2782 3.924013 ATGGTGGGAGGCGAGGTGA 62.924 63.158 0.00 0.00 0.00 4.02
2699 2783 3.391665 GATGGTGGGAGGCGAGGTG 62.392 68.421 0.00 0.00 0.00 4.00
2700 2784 3.083997 GATGGTGGGAGGCGAGGT 61.084 66.667 0.00 0.00 0.00 3.85
2705 2789 3.515602 AAATAGATGATGGTGGGAGGC 57.484 47.619 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.