Multiple sequence alignment - TraesCS1A01G319600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G319600 chr1A 100.000 3677 0 0 1 3677 510377415 510381091 0.000000e+00 6791.0
1 TraesCS1A01G319600 chr1A 100.000 39 0 0 3639 3677 475607441 475607403 5.090000e-09 73.1
2 TraesCS1A01G319600 chr1B 94.366 1491 54 15 1738 3205 557942968 557944451 0.000000e+00 2261.0
3 TraesCS1A01G319600 chr1B 92.011 701 35 5 694 1394 557941907 557942586 0.000000e+00 965.0
4 TraesCS1A01G319600 chr1B 84.013 319 32 8 1398 1706 557942659 557942968 4.650000e-74 289.0
5 TraesCS1A01G319600 chr1B 86.577 149 10 5 3500 3639 557947759 557947906 4.920000e-34 156.0
6 TraesCS1A01G319600 chr1B 93.478 92 3 1 3210 3298 557944802 557944893 2.300000e-27 134.0
7 TraesCS1A01G319600 chr1D 89.918 1349 95 27 2000 3328 413578578 413579905 0.000000e+00 1700.0
8 TraesCS1A01G319600 chr1D 88.533 1404 123 30 4 1394 413576617 413577995 0.000000e+00 1666.0
9 TraesCS1A01G319600 chr1D 90.937 331 18 4 3321 3639 413581370 413581700 5.640000e-118 435.0
10 TraesCS1A01G319600 chr1D 93.305 239 6 5 1736 1965 413578338 413578575 9.780000e-91 344.0
11 TraesCS1A01G319600 chr7A 95.946 74 2 1 3494 3566 559193412 559193485 6.450000e-23 119.0
12 TraesCS1A01G319600 chr7A 100.000 39 0 0 3639 3677 229246323 229246361 5.090000e-09 73.1
13 TraesCS1A01G319600 chr7A 93.617 47 2 1 3631 3677 267516333 267516378 6.590000e-08 69.4
14 TraesCS1A01G319600 chr2A 95.946 74 2 1 3494 3566 757916264 757916337 6.450000e-23 119.0
15 TraesCS1A01G319600 chr2A 94.595 74 3 1 3494 3566 45110399 45110472 3.000000e-21 113.0
16 TraesCS1A01G319600 chr2A 97.727 44 0 1 3635 3677 282471260 282471217 1.420000e-09 75.0
17 TraesCS1A01G319600 chr6A 100.000 39 0 0 3639 3677 163906976 163907014 5.090000e-09 73.1
18 TraesCS1A01G319600 chr6A 100.000 39 0 0 3639 3677 250529675 250529713 5.090000e-09 73.1
19 TraesCS1A01G319600 chr3A 100.000 39 0 0 3639 3677 35909244 35909206 5.090000e-09 73.1
20 TraesCS1A01G319600 chr3A 100.000 39 0 0 3639 3677 178839521 178839559 5.090000e-09 73.1
21 TraesCS1A01G319600 chr3A 100.000 39 0 0 3639 3677 462754969 462755007 5.090000e-09 73.1
22 TraesCS1A01G319600 chr3B 97.059 34 1 0 3133 3166 139830496 139830529 1.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G319600 chr1A 510377415 510381091 3676 False 6791.00 6791 100.00000 1 3677 1 chr1A.!!$F1 3676
1 TraesCS1A01G319600 chr1B 557941907 557947906 5999 False 761.00 2261 90.08900 694 3639 5 chr1B.!!$F1 2945
2 TraesCS1A01G319600 chr1D 413576617 413581700 5083 False 1036.25 1700 90.67325 4 3639 4 chr1D.!!$F1 3635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 590 2.027625 GAACGTTCGCTGTGAGGGG 61.028 63.158 13.36 0.0 0.0 4.79 F
1604 1701 0.033504 ACCTCTGTACCAAGTGCACG 59.966 55.000 12.01 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 1713 0.025001 CAACGCAGCTAAATCGACCG 59.975 55.0 0.0 0.0 0.00 4.79 R
2704 2849 0.037303 ATGCCCTAGCCCATTCGATG 59.963 55.0 0.0 0.0 38.69 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 211 9.571816 AATTAGGGAGCAAAAATTGAAAATTCA 57.428 25.926 0.00 0.00 34.92 2.57
340 343 2.031560 TGTGAACGTTGTTCTGTCATGC 59.968 45.455 5.00 0.00 0.00 4.06
342 345 3.493129 GTGAACGTTGTTCTGTCATGCTA 59.507 43.478 5.00 0.00 0.00 3.49
343 346 3.740832 TGAACGTTGTTCTGTCATGCTAG 59.259 43.478 5.00 0.00 0.00 3.42
448 452 8.485392 TGAAAGAAGGGAACAATTTTTGAAGAT 58.515 29.630 0.00 0.00 0.00 2.40
550 561 6.613153 TGGAAAGAAAAAGAAAAGGACCAA 57.387 33.333 0.00 0.00 0.00 3.67
551 562 6.639563 TGGAAAGAAAAAGAAAAGGACCAAG 58.360 36.000 0.00 0.00 0.00 3.61
558 569 7.397476 AGAAAAAGAAAAGGACCAAGATATCCC 59.603 37.037 0.00 0.00 35.38 3.85
559 570 4.797912 AGAAAAGGACCAAGATATCCCC 57.202 45.455 0.00 0.00 35.38 4.81
568 579 2.480845 CAAGATATCCCCCGAACGTTC 58.519 52.381 18.47 18.47 0.00 3.95
578 589 2.372690 CGAACGTTCGCTGTGAGGG 61.373 63.158 34.54 8.59 44.26 4.30
579 590 2.027625 GAACGTTCGCTGTGAGGGG 61.028 63.158 13.36 0.00 0.00 4.79
582 593 2.317609 CGTTCGCTGTGAGGGGTTG 61.318 63.158 0.00 0.00 0.00 3.77
589 600 2.355310 CGCTGTGAGGGGTTGGTATTTA 60.355 50.000 0.00 0.00 0.00 1.40
603 614 8.298854 GGGTTGGTATTTACAAACGTTTTAGAT 58.701 33.333 11.66 10.20 40.28 1.98
636 647 4.640647 GGGGGAATCACACTCACTTTATTC 59.359 45.833 0.00 0.00 0.00 1.75
797 817 3.181454 ACGGAAATAAAGATCCAGGCGAT 60.181 43.478 0.00 0.00 35.34 4.58
847 867 2.435586 CAGAGCCAGCCAACTCCG 60.436 66.667 0.00 0.00 33.18 4.63
848 868 3.710722 AGAGCCAGCCAACTCCGG 61.711 66.667 0.00 0.00 33.18 5.14
960 980 2.356553 CCACCACCACCGTACGTG 60.357 66.667 15.21 12.06 42.62 4.49
1005 1025 4.394712 CGTCCACACCCCCTCAGC 62.395 72.222 0.00 0.00 0.00 4.26
1232 1253 1.004918 CAAGTTCTTCGACCCGGCT 60.005 57.895 0.00 0.00 0.00 5.52
1235 1256 1.218316 GTTCTTCGACCCGGCTGAT 59.782 57.895 0.00 0.00 0.00 2.90
1241 1262 2.746277 GACCCGGCTGATGCGTTT 60.746 61.111 0.00 0.00 40.82 3.60
1244 1265 3.864686 CCGGCTGATGCGTTTCCG 61.865 66.667 0.00 7.27 40.82 4.30
1256 1277 1.519408 CGTTTCCGATGTGGGAGTTT 58.481 50.000 0.00 0.00 37.40 2.66
1262 1283 1.676014 CCGATGTGGGAGTTTGAGTCC 60.676 57.143 0.00 0.00 36.97 3.85
1387 1408 3.626680 TACGCACACAGCTCGCTCC 62.627 63.158 0.00 0.00 42.61 4.70
1394 1415 0.529337 CACAGCTCGCTCCATCGATT 60.529 55.000 0.00 0.00 37.87 3.34
1403 1493 2.222886 CGCTCCATCGATTGTTTCACAG 60.223 50.000 0.00 0.00 0.00 3.66
1432 1522 0.582005 GGCTGTGTTCGTCTGTTGTC 59.418 55.000 0.00 0.00 0.00 3.18
1450 1540 6.277605 TGTTGTCGAAGATGACTTAACTTGA 58.722 36.000 0.00 0.00 40.67 3.02
1451 1541 6.420903 TGTTGTCGAAGATGACTTAACTTGAG 59.579 38.462 0.00 0.00 40.67 3.02
1452 1542 6.085555 TGTCGAAGATGACTTAACTTGAGT 57.914 37.500 0.00 0.00 40.67 3.41
1538 1635 3.949113 GTCCCAAGTGACAAAAGTACCAA 59.051 43.478 0.00 0.00 35.29 3.67
1561 1658 4.189231 AGTTTTAGCATAGATTCGCCGTT 58.811 39.130 0.00 0.00 0.00 4.44
1562 1659 4.270325 AGTTTTAGCATAGATTCGCCGTTC 59.730 41.667 0.00 0.00 0.00 3.95
1563 1660 2.433868 TAGCATAGATTCGCCGTTCC 57.566 50.000 0.00 0.00 0.00 3.62
1566 1663 1.806623 GCATAGATTCGCCGTTCCAGT 60.807 52.381 0.00 0.00 0.00 4.00
1576 1673 1.472480 GCCGTTCCAGTAAATGCATGT 59.528 47.619 0.00 0.00 0.00 3.21
1582 1679 6.365839 CGTTCCAGTAAATGCATGTATGATC 58.634 40.000 0.00 0.00 0.00 2.92
1585 1682 6.829849 TCCAGTAAATGCATGTATGATCTGA 58.170 36.000 11.88 2.62 0.00 3.27
1591 1688 4.332428 TGCATGTATGATCTGACCTCTG 57.668 45.455 0.00 0.00 0.00 3.35
1593 1690 4.895297 TGCATGTATGATCTGACCTCTGTA 59.105 41.667 0.00 0.00 0.00 2.74
1594 1691 5.221322 TGCATGTATGATCTGACCTCTGTAC 60.221 44.000 0.00 0.00 0.00 2.90
1595 1692 5.777802 CATGTATGATCTGACCTCTGTACC 58.222 45.833 0.00 0.00 0.00 3.34
1596 1693 4.867086 TGTATGATCTGACCTCTGTACCA 58.133 43.478 0.00 0.00 0.00 3.25
1598 1695 5.360999 TGTATGATCTGACCTCTGTACCAAG 59.639 44.000 0.00 0.00 0.00 3.61
1599 1696 3.779444 TGATCTGACCTCTGTACCAAGT 58.221 45.455 0.00 0.00 0.00 3.16
1600 1697 3.511540 TGATCTGACCTCTGTACCAAGTG 59.488 47.826 0.00 0.00 0.00 3.16
1601 1698 1.618837 TCTGACCTCTGTACCAAGTGC 59.381 52.381 0.00 0.00 0.00 4.40
1602 1699 1.344438 CTGACCTCTGTACCAAGTGCA 59.656 52.381 0.00 0.00 0.00 4.57
1603 1700 1.070134 TGACCTCTGTACCAAGTGCAC 59.930 52.381 9.40 9.40 0.00 4.57
1604 1701 0.033504 ACCTCTGTACCAAGTGCACG 59.966 55.000 12.01 0.00 0.00 5.34
1605 1702 0.670546 CCTCTGTACCAAGTGCACGG 60.671 60.000 12.01 10.34 0.00 4.94
1606 1703 0.670546 CTCTGTACCAAGTGCACGGG 60.671 60.000 23.74 23.74 0.00 5.28
1607 1704 1.070786 CTGTACCAAGTGCACGGGT 59.929 57.895 30.30 30.30 38.70 5.28
1609 1706 0.533308 TGTACCAAGTGCACGGGTTC 60.533 55.000 31.87 27.54 36.14 3.62
1612 1709 2.551912 CCAAGTGCACGGGTTCCAC 61.552 63.158 19.01 0.00 0.00 4.02
1613 1710 1.525995 CAAGTGCACGGGTTCCACT 60.526 57.895 12.01 0.00 41.26 4.00
1614 1711 1.227853 AAGTGCACGGGTTCCACTC 60.228 57.895 12.01 0.00 38.77 3.51
1615 1712 2.668550 GTGCACGGGTTCCACTCC 60.669 66.667 0.00 0.00 0.00 3.85
1616 1713 3.948719 TGCACGGGTTCCACTCCC 61.949 66.667 0.00 0.00 41.41 4.30
1622 1719 2.993264 GGTTCCACTCCCGGTCGA 60.993 66.667 0.00 0.00 0.00 4.20
1623 1720 2.356780 GGTTCCACTCCCGGTCGAT 61.357 63.158 0.00 0.00 0.00 3.59
1624 1721 1.595357 GTTCCACTCCCGGTCGATT 59.405 57.895 0.00 0.00 0.00 3.34
1625 1722 0.036671 GTTCCACTCCCGGTCGATTT 60.037 55.000 0.00 0.00 0.00 2.17
1634 1732 1.082117 CCGGTCGATTTAGCTGCGTT 61.082 55.000 0.00 0.00 0.00 4.84
1639 1737 3.345714 GTCGATTTAGCTGCGTTGATTG 58.654 45.455 0.00 0.00 0.00 2.67
1656 1754 7.008447 GCGTTGATTGTCTAGGAATATATCGAC 59.992 40.741 0.00 0.00 0.00 4.20
1657 1755 7.485277 CGTTGATTGTCTAGGAATATATCGACC 59.515 40.741 0.00 0.00 0.00 4.79
1677 1775 3.181482 ACCAGCAGATGTCTAGATGAACG 60.181 47.826 0.00 0.00 0.00 3.95
1680 1778 3.049206 GCAGATGTCTAGATGAACGAGC 58.951 50.000 0.00 0.00 0.00 5.03
1681 1779 3.243367 GCAGATGTCTAGATGAACGAGCT 60.243 47.826 0.00 0.00 0.00 4.09
1706 1804 2.510928 AGTTACCGTGCTCCTCTACT 57.489 50.000 0.00 0.00 0.00 2.57
1707 1805 2.093106 AGTTACCGTGCTCCTCTACTG 58.907 52.381 0.00 0.00 0.00 2.74
1708 1806 1.817447 GTTACCGTGCTCCTCTACTGT 59.183 52.381 0.00 0.00 0.00 3.55
1709 1807 1.747709 TACCGTGCTCCTCTACTGTC 58.252 55.000 0.00 0.00 0.00 3.51
1712 1810 1.306642 CGTGCTCCTCTACTGTCCGT 61.307 60.000 0.00 0.00 0.00 4.69
1713 1811 0.452585 GTGCTCCTCTACTGTCCGTC 59.547 60.000 0.00 0.00 0.00 4.79
1714 1812 1.025113 TGCTCCTCTACTGTCCGTCG 61.025 60.000 0.00 0.00 0.00 5.12
1715 1813 0.743701 GCTCCTCTACTGTCCGTCGA 60.744 60.000 0.00 0.00 0.00 4.20
1716 1814 1.956297 CTCCTCTACTGTCCGTCGAT 58.044 55.000 0.00 0.00 0.00 3.59
1717 1815 1.868498 CTCCTCTACTGTCCGTCGATC 59.132 57.143 0.00 0.00 0.00 3.69
1718 1816 1.208776 TCCTCTACTGTCCGTCGATCA 59.791 52.381 0.00 0.00 0.00 2.92
1719 1817 2.014857 CCTCTACTGTCCGTCGATCAA 58.985 52.381 0.00 0.00 0.00 2.57
1720 1818 2.223294 CCTCTACTGTCCGTCGATCAAC 60.223 54.545 0.00 0.00 0.00 3.18
1721 1819 2.418976 CTCTACTGTCCGTCGATCAACA 59.581 50.000 0.00 0.00 0.00 3.33
1722 1820 2.815503 TCTACTGTCCGTCGATCAACAA 59.184 45.455 0.00 0.00 0.00 2.83
1723 1821 1.779569 ACTGTCCGTCGATCAACAAC 58.220 50.000 0.00 0.00 0.00 3.32
1724 1822 1.067974 ACTGTCCGTCGATCAACAACA 59.932 47.619 0.00 0.00 0.00 3.33
1725 1823 1.455786 CTGTCCGTCGATCAACAACAC 59.544 52.381 0.00 0.00 0.00 3.32
1726 1824 0.788391 GTCCGTCGATCAACAACACC 59.212 55.000 0.00 0.00 0.00 4.16
1727 1825 0.677288 TCCGTCGATCAACAACACCT 59.323 50.000 0.00 0.00 0.00 4.00
1728 1826 1.068474 CCGTCGATCAACAACACCTC 58.932 55.000 0.00 0.00 0.00 3.85
1729 1827 1.604438 CCGTCGATCAACAACACCTCA 60.604 52.381 0.00 0.00 0.00 3.86
1730 1828 1.721389 CGTCGATCAACAACACCTCAG 59.279 52.381 0.00 0.00 0.00 3.35
1731 1829 2.607038 CGTCGATCAACAACACCTCAGA 60.607 50.000 0.00 0.00 0.00 3.27
1732 1830 3.390135 GTCGATCAACAACACCTCAGAA 58.610 45.455 0.00 0.00 0.00 3.02
1733 1831 3.430218 GTCGATCAACAACACCTCAGAAG 59.570 47.826 0.00 0.00 0.00 2.85
1734 1832 3.320826 TCGATCAACAACACCTCAGAAGA 59.679 43.478 0.00 0.00 0.00 2.87
1735 1833 4.021104 TCGATCAACAACACCTCAGAAGAT 60.021 41.667 0.00 0.00 0.00 2.40
1736 1834 4.092529 CGATCAACAACACCTCAGAAGATG 59.907 45.833 0.00 0.00 0.00 2.90
1737 1835 3.141398 TCAACAACACCTCAGAAGATGC 58.859 45.455 0.00 0.00 0.00 3.91
1738 1836 2.191128 ACAACACCTCAGAAGATGCC 57.809 50.000 0.00 0.00 0.00 4.40
1739 1837 1.421268 ACAACACCTCAGAAGATGCCA 59.579 47.619 0.00 0.00 0.00 4.92
1740 1838 1.808945 CAACACCTCAGAAGATGCCAC 59.191 52.381 0.00 0.00 0.00 5.01
1741 1839 1.059098 ACACCTCAGAAGATGCCACA 58.941 50.000 0.00 0.00 0.00 4.17
1742 1840 1.271054 ACACCTCAGAAGATGCCACAC 60.271 52.381 0.00 0.00 0.00 3.82
1743 1841 0.036952 ACCTCAGAAGATGCCACACG 60.037 55.000 0.00 0.00 0.00 4.49
1744 1842 0.742281 CCTCAGAAGATGCCACACGG 60.742 60.000 0.00 0.00 0.00 4.94
1787 1885 5.156355 CCTTTGCATTTCGCCACATATATC 58.844 41.667 0.00 0.00 41.33 1.63
1925 2032 4.421479 CCTTCTGTCGCCGTCGCT 62.421 66.667 0.00 0.00 35.26 4.93
2368 2481 1.333636 CGCTGGAGATCAAGGTCCCT 61.334 60.000 0.00 0.00 31.04 4.20
2384 2497 1.323271 CCCTAAGAGGAGCAGCGACA 61.323 60.000 0.00 0.00 37.67 4.35
2407 2520 1.876156 CACCAACAAGCCTGAGAGAAC 59.124 52.381 0.00 0.00 0.00 3.01
2524 2644 2.154462 AGTTGATGGCGACTGAAAAGG 58.846 47.619 0.00 0.00 37.37 3.11
2623 2749 5.233476 GCATGATGTTGCAAATCCAATGTAG 59.767 40.000 0.00 0.00 42.31 2.74
2624 2750 5.981088 TGATGTTGCAAATCCAATGTAGT 57.019 34.783 0.00 0.00 0.00 2.73
2625 2751 7.482474 CATGATGTTGCAAATCCAATGTAGTA 58.518 34.615 0.00 0.00 0.00 1.82
2656 2782 6.808008 AATATGTTCTTCAGTTCCACTGTG 57.192 37.500 0.00 0.00 46.03 3.66
2658 2784 4.214986 TGTTCTTCAGTTCCACTGTGAA 57.785 40.909 9.86 7.21 46.03 3.18
2659 2785 4.780815 TGTTCTTCAGTTCCACTGTGAAT 58.219 39.130 9.86 0.00 46.03 2.57
2696 2841 0.385974 GCAGTGCCGCTGTTAGTTTG 60.386 55.000 2.85 0.00 46.64 2.93
2704 2849 1.154197 GCTGTTAGTTTGGGTCGTCC 58.846 55.000 0.00 0.00 0.00 4.79
2788 2933 6.305693 ACTTTTGAAAGGTTGATTCTCTCG 57.694 37.500 8.23 0.00 40.31 4.04
2801 2946 2.065993 TCTCTCGTTTCTTTCGGCAG 57.934 50.000 0.00 0.00 0.00 4.85
2922 3067 5.815233 TGAGATCCTCAGGTGATTATTCC 57.185 43.478 0.00 0.00 35.39 3.01
2954 3099 1.800586 CGTTGCCCAGATGATATTCCG 59.199 52.381 0.00 0.00 0.00 4.30
2964 3109 5.118990 CAGATGATATTCCGTGGTTTCAGT 58.881 41.667 0.00 0.00 0.00 3.41
2981 3126 6.305638 GGTTTCAGTCGATGATTTTGCTTTAC 59.694 38.462 0.00 0.00 37.89 2.01
2986 3131 7.750458 TCAGTCGATGATTTTGCTTTACATTTC 59.250 33.333 0.00 0.00 31.12 2.17
2987 3132 7.008628 CAGTCGATGATTTTGCTTTACATTTCC 59.991 37.037 0.00 0.00 0.00 3.13
3060 3206 8.437742 GGTGCATCATTATTTTGACAAGAAAAG 58.562 33.333 0.00 0.00 0.00 2.27
3073 3219 7.435068 TGACAAGAAAAGTTATAACTCAGGC 57.565 36.000 18.28 8.66 38.57 4.85
3102 3248 8.231692 TCAACTATCACAAAGTCCAAATTTGA 57.768 30.769 19.86 3.14 39.50 2.69
3119 3265 8.292448 CCAAATTTGATCCCTCAACTATAATCG 58.708 37.037 19.86 0.00 41.05 3.34
3287 3783 6.358974 TGACTTCACTATTTGGTCTCATCA 57.641 37.500 0.00 0.00 0.00 3.07
3299 3795 6.684897 TTGGTCTCATCATTTTGGGAAAAT 57.315 33.333 0.00 0.00 41.57 1.82
3325 3821 3.647590 ACAAAAGGTTGATGCCAAATCCT 59.352 39.130 0.00 0.00 38.20 3.24
3326 3822 4.837860 ACAAAAGGTTGATGCCAAATCCTA 59.162 37.500 0.00 0.00 38.20 2.94
3340 7016 6.326583 TGCCAAATCCTAGCTTACTATGTACT 59.673 38.462 0.00 0.00 0.00 2.73
3386 7062 7.611079 AGACCTTTTAGATCACTAAGTAGTCGT 59.389 37.037 0.00 0.00 39.36 4.34
3388 7064 7.176340 ACCTTTTAGATCACTAAGTAGTCGTGT 59.824 37.037 0.00 0.00 39.36 4.49
3475 7154 6.680874 AGAGTGTAGTTGGAGTAGTTATCG 57.319 41.667 0.00 0.00 0.00 2.92
3504 7450 0.533308 GTGTTTGGTACACGGCAGGA 60.533 55.000 0.00 0.00 46.94 3.86
3558 7504 6.814146 TGTTGTGAATTAGGTGGTTGTTTTTC 59.186 34.615 0.00 0.00 0.00 2.29
3567 7513 9.636789 ATTAGGTGGTTGTTTTTCTACTTAAGT 57.363 29.630 13.68 13.68 0.00 2.24
3570 7516 7.612633 AGGTGGTTGTTTTTCTACTTAAGTTCA 59.387 33.333 14.49 0.00 0.00 3.18
3572 7518 9.797556 GTGGTTGTTTTTCTACTTAAGTTCAAT 57.202 29.630 14.49 0.00 0.00 2.57
3650 7605 5.909621 ACTTTTAGTATGTAGCGACCAGA 57.090 39.130 0.00 0.00 0.00 3.86
3651 7606 6.466885 ACTTTTAGTATGTAGCGACCAGAT 57.533 37.500 0.00 0.00 0.00 2.90
3652 7607 6.505272 ACTTTTAGTATGTAGCGACCAGATC 58.495 40.000 0.00 0.00 0.00 2.75
3653 7608 6.321690 ACTTTTAGTATGTAGCGACCAGATCT 59.678 38.462 0.00 0.00 0.00 2.75
3654 7609 5.943706 TTAGTATGTAGCGACCAGATCTC 57.056 43.478 0.00 0.00 0.00 2.75
3655 7610 3.821748 AGTATGTAGCGACCAGATCTCA 58.178 45.455 0.00 0.00 0.00 3.27
3656 7611 4.207955 AGTATGTAGCGACCAGATCTCAA 58.792 43.478 0.00 0.00 0.00 3.02
3657 7612 4.645136 AGTATGTAGCGACCAGATCTCAAA 59.355 41.667 0.00 0.00 0.00 2.69
3658 7613 3.232213 TGTAGCGACCAGATCTCAAAC 57.768 47.619 0.00 0.00 0.00 2.93
3659 7614 2.186076 GTAGCGACCAGATCTCAAACG 58.814 52.381 0.00 0.00 0.00 3.60
3660 7615 0.108615 AGCGACCAGATCTCAAACGG 60.109 55.000 0.00 0.00 0.00 4.44
3661 7616 0.389948 GCGACCAGATCTCAAACGGT 60.390 55.000 1.42 1.42 0.00 4.83
3662 7617 1.630148 CGACCAGATCTCAAACGGTC 58.370 55.000 15.90 15.90 42.25 4.79
3663 7618 1.736032 CGACCAGATCTCAAACGGTCC 60.736 57.143 18.67 6.23 42.63 4.46
3664 7619 1.275291 GACCAGATCTCAAACGGTCCA 59.725 52.381 15.25 0.00 40.25 4.02
3665 7620 1.697432 ACCAGATCTCAAACGGTCCAA 59.303 47.619 0.00 0.00 0.00 3.53
3666 7621 2.305927 ACCAGATCTCAAACGGTCCAAT 59.694 45.455 0.00 0.00 0.00 3.16
3667 7622 2.939103 CCAGATCTCAAACGGTCCAATC 59.061 50.000 0.00 0.00 0.00 2.67
3668 7623 3.369892 CCAGATCTCAAACGGTCCAATCT 60.370 47.826 0.00 0.00 0.00 2.40
3669 7624 3.868077 CAGATCTCAAACGGTCCAATCTC 59.132 47.826 0.00 0.00 0.00 2.75
3670 7625 3.772025 AGATCTCAAACGGTCCAATCTCT 59.228 43.478 0.00 0.00 0.00 3.10
3671 7626 3.319137 TCTCAAACGGTCCAATCTCTG 57.681 47.619 0.00 0.00 0.00 3.35
3672 7627 2.632996 TCTCAAACGGTCCAATCTCTGT 59.367 45.455 0.00 0.00 0.00 3.41
3673 7628 2.738846 CTCAAACGGTCCAATCTCTGTG 59.261 50.000 0.00 0.00 0.00 3.66
3674 7629 1.197721 CAAACGGTCCAATCTCTGTGC 59.802 52.381 0.00 0.00 0.00 4.57
3675 7630 0.687354 AACGGTCCAATCTCTGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
3676 7631 0.247736 ACGGTCCAATCTCTGTGCTC 59.752 55.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 172 9.447157 TTTGCTCCCTAATTTCCAAAAATATTG 57.553 29.630 0.00 0.00 33.93 1.90
187 190 6.144854 GCTTGAATTTTCAATTTTTGCTCCC 58.855 36.000 6.21 0.00 45.26 4.30
188 191 5.847515 CGCTTGAATTTTCAATTTTTGCTCC 59.152 36.000 6.21 0.00 45.26 4.70
191 194 8.712341 AATACGCTTGAATTTTCAATTTTTGC 57.288 26.923 6.21 5.44 45.26 3.68
252 255 9.225436 ACTTCAAAAATTGTTTGCCTTTTAAGA 57.775 25.926 0.00 0.00 0.00 2.10
253 256 9.489393 GACTTCAAAAATTGTTTGCCTTTTAAG 57.511 29.630 0.00 0.00 0.00 1.85
260 263 5.115480 TCAGGACTTCAAAAATTGTTTGCC 58.885 37.500 0.00 0.00 0.00 4.52
307 310 9.413048 AGAACAACGTTCACAATTTAAGAAAAA 57.587 25.926 0.00 0.00 0.00 1.94
308 311 8.855279 CAGAACAACGTTCACAATTTAAGAAAA 58.145 29.630 0.00 0.00 0.00 2.29
309 312 8.024285 ACAGAACAACGTTCACAATTTAAGAAA 58.976 29.630 0.00 0.00 0.00 2.52
312 315 6.964370 TGACAGAACAACGTTCACAATTTAAG 59.036 34.615 0.00 0.00 0.00 1.85
318 321 3.486708 GCATGACAGAACAACGTTCACAA 60.487 43.478 0.00 0.00 0.00 3.33
325 328 4.313522 GTTCTAGCATGACAGAACAACG 57.686 45.455 24.14 0.00 46.45 4.10
527 537 6.439058 TCTTGGTCCTTTTCTTTTTCTTTCCA 59.561 34.615 0.00 0.00 0.00 3.53
538 549 3.463704 GGGGGATATCTTGGTCCTTTTCT 59.536 47.826 2.05 0.00 34.84 2.52
550 561 0.672342 CGAACGTTCGGGGGATATCT 59.328 55.000 36.53 0.00 46.30 1.98
551 562 3.190337 CGAACGTTCGGGGGATATC 57.810 57.895 36.53 4.64 46.30 1.63
568 579 0.035439 AATACCAACCCCTCACAGCG 60.035 55.000 0.00 0.00 0.00 5.18
608 619 2.962421 GTGAGTGTGATTCCCCCAAAAA 59.038 45.455 0.00 0.00 0.00 1.94
610 621 1.780309 AGTGAGTGTGATTCCCCCAAA 59.220 47.619 0.00 0.00 0.00 3.28
613 624 2.586648 AAAGTGAGTGTGATTCCCCC 57.413 50.000 0.00 0.00 0.00 5.40
682 702 7.488150 CACAACGGCGTCATATACTCATATATT 59.512 37.037 15.17 0.00 32.54 1.28
683 703 6.972901 CACAACGGCGTCATATACTCATATAT 59.027 38.462 15.17 0.00 34.79 0.86
684 704 6.319399 CACAACGGCGTCATATACTCATATA 58.681 40.000 15.17 0.00 0.00 0.86
685 705 5.161358 CACAACGGCGTCATATACTCATAT 58.839 41.667 15.17 0.00 0.00 1.78
686 706 4.542735 CACAACGGCGTCATATACTCATA 58.457 43.478 15.17 0.00 0.00 2.15
687 707 3.381045 CACAACGGCGTCATATACTCAT 58.619 45.455 15.17 0.00 0.00 2.90
688 708 2.480587 CCACAACGGCGTCATATACTCA 60.481 50.000 15.17 0.00 0.00 3.41
689 709 2.124903 CCACAACGGCGTCATATACTC 58.875 52.381 15.17 0.00 0.00 2.59
690 710 2.218953 CCACAACGGCGTCATATACT 57.781 50.000 15.17 0.00 0.00 2.12
717 737 5.104900 AGGATGCCCGGTATGTATAGATTTC 60.105 44.000 0.00 0.00 37.58 2.17
718 738 4.783227 AGGATGCCCGGTATGTATAGATTT 59.217 41.667 0.00 0.00 37.58 2.17
725 745 1.183030 CCGAGGATGCCCGGTATGTA 61.183 60.000 0.00 0.00 40.78 2.29
772 792 3.131396 CCTGGATCTTTATTTCCGTCGG 58.869 50.000 4.39 4.39 34.58 4.79
774 794 2.544267 CGCCTGGATCTTTATTTCCGTC 59.456 50.000 0.00 0.00 34.58 4.79
776 796 2.833794 TCGCCTGGATCTTTATTTCCG 58.166 47.619 0.00 0.00 34.58 4.30
778 798 6.377327 TTTCATCGCCTGGATCTTTATTTC 57.623 37.500 0.00 0.00 31.28 2.17
782 802 4.640201 CCTTTTTCATCGCCTGGATCTTTA 59.360 41.667 0.00 0.00 31.28 1.85
797 817 1.611491 GTGTGATTCCCGCCTTTTTCA 59.389 47.619 0.00 0.00 0.00 2.69
960 980 1.468520 TCGCGTTATATAGTACGGGGC 59.531 52.381 18.40 0.60 46.57 5.80
1008 1028 4.811364 GAAGGCAGGCAGGGGAGC 62.811 72.222 0.00 0.00 0.00 4.70
1241 1262 1.275291 GACTCAAACTCCCACATCGGA 59.725 52.381 0.00 0.00 36.56 4.55
1244 1265 1.275291 TCGGACTCAAACTCCCACATC 59.725 52.381 0.00 0.00 0.00 3.06
1256 1277 3.268965 GAGCAGCACGTCGGACTCA 62.269 63.158 6.57 0.00 0.00 3.41
1403 1493 1.654105 CGAACACAGCCGATCTTGTAC 59.346 52.381 0.00 0.00 0.00 2.90
1432 1522 9.063739 GTTACTACTCAAGTTAAGTCATCTTCG 57.936 37.037 0.00 0.00 39.80 3.79
1478 1568 6.144854 TGAAGCTTGAACAAAAATCTGATCG 58.855 36.000 2.10 0.00 0.00 3.69
1490 1580 4.462483 AGGTTTCAGTTTGAAGCTTGAACA 59.538 37.500 19.07 4.05 37.70 3.18
1538 1635 4.189231 ACGGCGAATCTATGCTAAAACTT 58.811 39.130 16.62 0.00 0.00 2.66
1561 1658 6.707608 GTCAGATCATACATGCATTTACTGGA 59.292 38.462 0.00 0.00 0.00 3.86
1562 1659 6.072838 GGTCAGATCATACATGCATTTACTGG 60.073 42.308 0.00 0.00 0.00 4.00
1563 1660 6.709397 AGGTCAGATCATACATGCATTTACTG 59.291 38.462 0.00 0.00 0.00 2.74
1566 1663 6.932960 CAGAGGTCAGATCATACATGCATTTA 59.067 38.462 0.00 0.00 0.00 1.40
1576 1673 5.360999 CACTTGGTACAGAGGTCAGATCATA 59.639 44.000 0.00 0.00 42.39 2.15
1582 1679 1.344438 TGCACTTGGTACAGAGGTCAG 59.656 52.381 0.00 0.00 42.39 3.51
1585 1682 0.033504 CGTGCACTTGGTACAGAGGT 59.966 55.000 16.19 0.00 42.39 3.85
1591 1688 1.232621 GGAACCCGTGCACTTGGTAC 61.233 60.000 23.33 16.90 0.00 3.34
1593 1690 2.203294 GGAACCCGTGCACTTGGT 60.203 61.111 19.03 19.03 0.00 3.67
1594 1691 2.203280 TGGAACCCGTGCACTTGG 60.203 61.111 16.19 17.16 0.00 3.61
1595 1692 3.030652 GTGGAACCCGTGCACTTG 58.969 61.111 16.19 8.11 44.75 3.16
1599 1696 3.948719 GGGAGTGGAACCCGTGCA 61.949 66.667 0.00 0.00 37.80 4.57
1604 1701 4.078516 CGACCGGGAGTGGAACCC 62.079 72.222 6.32 0.00 43.57 4.11
1605 1702 1.896122 AATCGACCGGGAGTGGAACC 61.896 60.000 6.32 0.00 36.73 3.62
1606 1703 0.036671 AAATCGACCGGGAGTGGAAC 60.037 55.000 6.32 0.00 36.73 3.62
1607 1704 1.479323 CTAAATCGACCGGGAGTGGAA 59.521 52.381 6.32 0.00 36.73 3.53
1609 1706 0.529992 GCTAAATCGACCGGGAGTGG 60.530 60.000 6.32 0.00 0.00 4.00
1612 1709 0.876342 GCAGCTAAATCGACCGGGAG 60.876 60.000 6.32 0.00 0.00 4.30
1613 1710 1.143183 GCAGCTAAATCGACCGGGA 59.857 57.895 6.32 0.00 0.00 5.14
1614 1711 2.237751 CGCAGCTAAATCGACCGGG 61.238 63.158 6.32 0.00 0.00 5.73
1615 1712 1.082117 AACGCAGCTAAATCGACCGG 61.082 55.000 0.00 0.00 0.00 5.28
1616 1713 0.025001 CAACGCAGCTAAATCGACCG 59.975 55.000 0.00 0.00 0.00 4.79
1617 1714 1.355971 TCAACGCAGCTAAATCGACC 58.644 50.000 0.00 0.00 0.00 4.79
1618 1715 3.181520 ACAATCAACGCAGCTAAATCGAC 60.182 43.478 0.00 0.00 0.00 4.20
1619 1716 3.000041 ACAATCAACGCAGCTAAATCGA 59.000 40.909 0.00 0.00 0.00 3.59
1620 1717 3.062639 AGACAATCAACGCAGCTAAATCG 59.937 43.478 0.00 0.00 0.00 3.34
1622 1719 4.572389 CCTAGACAATCAACGCAGCTAAAT 59.428 41.667 0.00 0.00 0.00 1.40
1623 1720 3.932710 CCTAGACAATCAACGCAGCTAAA 59.067 43.478 0.00 0.00 0.00 1.85
1624 1721 3.194755 TCCTAGACAATCAACGCAGCTAA 59.805 43.478 0.00 0.00 0.00 3.09
1625 1722 2.758423 TCCTAGACAATCAACGCAGCTA 59.242 45.455 0.00 0.00 0.00 3.32
1634 1732 7.363007 GCTGGTCGATATATTCCTAGACAATCA 60.363 40.741 0.00 0.00 0.00 2.57
1639 1737 5.648526 TCTGCTGGTCGATATATTCCTAGAC 59.351 44.000 0.00 0.00 0.00 2.59
1656 1754 3.067320 TCGTTCATCTAGACATCTGCTGG 59.933 47.826 0.00 0.00 0.00 4.85
1657 1755 4.289342 CTCGTTCATCTAGACATCTGCTG 58.711 47.826 0.00 0.00 0.00 4.41
1677 1775 4.104066 GAGCACGGTAACTTACTAAGCTC 58.896 47.826 16.67 16.67 37.87 4.09
1680 1778 4.398673 AGAGGAGCACGGTAACTTACTAAG 59.601 45.833 0.00 0.00 0.00 2.18
1681 1779 4.338879 AGAGGAGCACGGTAACTTACTAA 58.661 43.478 0.00 0.00 0.00 2.24
1706 1804 1.493772 GTGTTGTTGATCGACGGACA 58.506 50.000 14.75 14.75 33.33 4.02
1707 1805 0.788391 GGTGTTGTTGATCGACGGAC 59.212 55.000 8.59 9.90 33.33 4.79
1708 1806 0.677288 AGGTGTTGTTGATCGACGGA 59.323 50.000 8.59 0.00 33.33 4.69
1709 1807 1.068474 GAGGTGTTGTTGATCGACGG 58.932 55.000 8.59 0.00 33.33 4.79
1712 1810 3.320826 TCTTCTGAGGTGTTGTTGATCGA 59.679 43.478 0.00 0.00 0.00 3.59
1713 1811 3.653344 TCTTCTGAGGTGTTGTTGATCG 58.347 45.455 0.00 0.00 0.00 3.69
1714 1812 4.142730 GCATCTTCTGAGGTGTTGTTGATC 60.143 45.833 0.00 0.00 36.34 2.92
1715 1813 3.755378 GCATCTTCTGAGGTGTTGTTGAT 59.245 43.478 0.00 0.00 36.34 2.57
1716 1814 3.141398 GCATCTTCTGAGGTGTTGTTGA 58.859 45.455 0.00 0.00 36.34 3.18
1717 1815 2.227388 GGCATCTTCTGAGGTGTTGTTG 59.773 50.000 0.00 0.00 36.34 3.33
1718 1816 2.158623 TGGCATCTTCTGAGGTGTTGTT 60.159 45.455 0.00 0.00 36.34 2.83
1719 1817 1.421268 TGGCATCTTCTGAGGTGTTGT 59.579 47.619 0.00 0.00 36.34 3.32
1720 1818 1.808945 GTGGCATCTTCTGAGGTGTTG 59.191 52.381 0.00 0.00 36.34 3.33
1721 1819 1.421268 TGTGGCATCTTCTGAGGTGTT 59.579 47.619 0.00 0.00 36.34 3.32
1722 1820 1.059098 TGTGGCATCTTCTGAGGTGT 58.941 50.000 0.00 0.00 36.34 4.16
1723 1821 1.446907 GTGTGGCATCTTCTGAGGTG 58.553 55.000 0.00 0.00 37.06 4.00
1724 1822 0.036952 CGTGTGGCATCTTCTGAGGT 60.037 55.000 0.00 0.00 0.00 3.85
1725 1823 0.742281 CCGTGTGGCATCTTCTGAGG 60.742 60.000 0.00 0.00 0.00 3.86
1726 1824 2.759783 CCGTGTGGCATCTTCTGAG 58.240 57.895 0.00 0.00 0.00 3.35
1741 1839 0.981183 TGGATTCCTACACAAGCCGT 59.019 50.000 3.95 0.00 31.47 5.68
1742 1840 1.737793 GTTGGATTCCTACACAAGCCG 59.262 52.381 11.76 0.00 31.47 5.52
1743 1841 2.790433 TGTTGGATTCCTACACAAGCC 58.210 47.619 14.84 0.00 34.65 4.35
1787 1885 7.365741 AGTTGCAATCTTGTAAGAACATCTTG 58.634 34.615 0.59 0.36 37.29 3.02
1890 1997 1.669115 GCTGCACGTGACCATGACT 60.669 57.895 22.23 0.00 0.00 3.41
1925 2032 6.563010 CGCAACGAATAATTTGCCAAGAAAAA 60.563 34.615 0.00 0.00 44.39 1.94
1972 2079 2.103373 GCACTAGACTGGTCTGGATCA 58.897 52.381 18.43 0.00 40.16 2.92
2120 2233 8.909923 TGATGATCATGTCAAAGATAGCAAAAT 58.090 29.630 14.30 0.00 40.97 1.82
2368 2481 1.506718 CGTGTCGCTGCTCCTCTTA 59.493 57.895 0.00 0.00 0.00 2.10
2384 2497 1.893808 CTCAGGCTTGTTGGTGCGT 60.894 57.895 0.00 0.00 0.00 5.24
2407 2520 4.493747 GGCGTCGAGAGGTTCCGG 62.494 72.222 0.00 0.00 0.00 5.14
2658 2784 8.571336 GGCACTGCTGATTAATTAGTCATTTAT 58.429 33.333 10.71 0.00 0.00 1.40
2659 2785 7.254761 CGGCACTGCTGATTAATTAGTCATTTA 60.255 37.037 10.71 1.34 37.02 1.40
2704 2849 0.037303 ATGCCCTAGCCCATTCGATG 59.963 55.000 0.00 0.00 38.69 3.84
2788 2933 0.881118 TGCATCCTGCCGAAAGAAAC 59.119 50.000 0.00 0.00 44.23 2.78
2801 2946 1.069823 ACGACTGATGGAGATGCATCC 59.930 52.381 23.06 11.39 40.03 3.51
2922 3067 3.782244 GCAACGTGCCTCTCTGCG 61.782 66.667 0.00 0.00 37.42 5.18
2954 3099 3.914364 GCAAAATCATCGACTGAAACCAC 59.086 43.478 0.00 0.00 37.44 4.16
2964 3109 7.028962 CAGGAAATGTAAAGCAAAATCATCGA 58.971 34.615 0.00 0.00 0.00 3.59
2981 3126 4.082026 CAGGGCCTCTTTTTACAGGAAATG 60.082 45.833 0.95 0.00 0.00 2.32
2986 3131 2.586648 ACAGGGCCTCTTTTTACAGG 57.413 50.000 0.95 0.00 0.00 4.00
2987 3132 4.937201 AAAACAGGGCCTCTTTTTACAG 57.063 40.909 13.06 0.00 0.00 2.74
3022 3167 1.153289 ATGCACCGGTCTCATGAGC 60.153 57.895 18.36 12.59 37.35 4.26
3060 3206 3.200165 AGTTGAGGGGCCTGAGTTATAAC 59.800 47.826 7.57 7.57 0.00 1.89
3073 3219 3.009033 TGGACTTTGTGATAGTTGAGGGG 59.991 47.826 0.00 0.00 0.00 4.79
3102 3248 5.024118 CCCCTACGATTATAGTTGAGGGAT 58.976 45.833 12.89 0.00 44.27 3.85
3119 3265 3.857157 TCCATGCAACTAATCCCCTAC 57.143 47.619 0.00 0.00 0.00 3.18
3205 3352 3.262405 ACTGCAAATTTCATGGCTGGATT 59.738 39.130 9.05 0.00 0.00 3.01
3239 3732 4.633126 CCATAATGTTCTGTGTGACAGGAG 59.367 45.833 3.96 0.00 45.94 3.69
3287 3783 6.422333 ACCTTTTGTGTCATTTTCCCAAAAT 58.578 32.000 0.00 0.00 41.57 1.82
3299 3795 2.382882 TGGCATCAACCTTTTGTGTCA 58.617 42.857 0.00 0.00 34.02 3.58
3302 3798 3.747529 GGATTTGGCATCAACCTTTTGTG 59.252 43.478 0.00 0.00 34.02 3.33
3325 3821 6.263412 ACAGAGGGAGTACATAGTAAGCTA 57.737 41.667 0.00 0.00 0.00 3.32
3326 3822 5.132043 ACAGAGGGAGTACATAGTAAGCT 57.868 43.478 0.00 0.00 0.00 3.74
3368 7044 7.334090 ACCTTACACGACTACTTAGTGATCTA 58.666 38.462 0.00 0.00 39.04 1.98
3423 7102 0.789383 GTCACATAAACGCGTGCAGC 60.789 55.000 14.98 0.00 43.95 5.25
3435 7114 9.239551 ACTACACTCTTGTTACATAGTCACATA 57.760 33.333 0.00 0.00 37.15 2.29
3438 7117 7.328737 CCAACTACACTCTTGTTACATAGTCAC 59.671 40.741 0.00 0.00 37.15 3.67
3475 7154 2.992607 TACCAAACACCGGCCGTGAC 62.993 60.000 26.12 0.00 46.20 3.67
3516 7462 5.048573 TCACAACAAACAGGACATCATGATG 60.049 40.000 29.95 29.95 44.15 3.07
3536 7482 6.783708 AGAAAAACAACCACCTAATTCACA 57.216 33.333 0.00 0.00 0.00 3.58
3566 7512 8.841300 GGAAGAACTAGGGATAATCAATTGAAC 58.159 37.037 13.09 4.69 0.00 3.18
3567 7513 8.781951 AGGAAGAACTAGGGATAATCAATTGAA 58.218 33.333 13.09 0.00 0.00 2.69
3570 7516 9.453830 ACTAGGAAGAACTAGGGATAATCAATT 57.546 33.333 5.37 0.00 43.72 2.32
3572 7518 9.589461 CTACTAGGAAGAACTAGGGATAATCAA 57.411 37.037 5.37 0.00 43.72 2.57
3574 7520 9.810870 TTCTACTAGGAAGAACTAGGGATAATC 57.189 37.037 5.87 0.00 43.72 1.75
3576 7522 9.810870 GATTCTACTAGGAAGAACTAGGGATAA 57.189 37.037 10.88 0.00 43.72 1.75
3639 7594 2.186076 CGTTTGAGATCTGGTCGCTAC 58.814 52.381 0.00 0.00 0.00 3.58
3640 7595 1.134367 CCGTTTGAGATCTGGTCGCTA 59.866 52.381 0.00 0.00 0.00 4.26
3641 7596 0.108615 CCGTTTGAGATCTGGTCGCT 60.109 55.000 0.00 0.00 0.00 4.93
3642 7597 0.389948 ACCGTTTGAGATCTGGTCGC 60.390 55.000 0.00 0.00 0.00 5.19
3643 7598 1.630148 GACCGTTTGAGATCTGGTCG 58.370 55.000 12.08 6.38 39.67 4.79
3644 7599 1.275291 TGGACCGTTTGAGATCTGGTC 59.725 52.381 17.09 17.09 46.58 4.02
3645 7600 1.348064 TGGACCGTTTGAGATCTGGT 58.652 50.000 0.00 0.00 35.14 4.00
3646 7601 2.472695 TTGGACCGTTTGAGATCTGG 57.527 50.000 0.00 0.00 0.00 3.86
3647 7602 3.866651 AGATTGGACCGTTTGAGATCTG 58.133 45.455 0.00 0.00 0.00 2.90
3648 7603 3.772025 AGAGATTGGACCGTTTGAGATCT 59.228 43.478 0.00 0.00 0.00 2.75
3649 7604 3.868077 CAGAGATTGGACCGTTTGAGATC 59.132 47.826 0.00 0.00 0.00 2.75
3650 7605 3.261897 ACAGAGATTGGACCGTTTGAGAT 59.738 43.478 0.00 0.00 0.00 2.75
3651 7606 2.632996 ACAGAGATTGGACCGTTTGAGA 59.367 45.455 0.00 0.00 0.00 3.27
3652 7607 2.738846 CACAGAGATTGGACCGTTTGAG 59.261 50.000 0.00 0.00 0.00 3.02
3653 7608 2.766313 CACAGAGATTGGACCGTTTGA 58.234 47.619 0.00 0.00 0.00 2.69
3654 7609 1.197721 GCACAGAGATTGGACCGTTTG 59.802 52.381 0.00 0.00 0.00 2.93
3655 7610 1.072331 AGCACAGAGATTGGACCGTTT 59.928 47.619 0.00 0.00 0.00 3.60
3656 7611 0.687354 AGCACAGAGATTGGACCGTT 59.313 50.000 0.00 0.00 0.00 4.44
3657 7612 0.247736 GAGCACAGAGATTGGACCGT 59.752 55.000 0.00 0.00 0.00 4.83
3658 7613 3.056628 GAGCACAGAGATTGGACCG 57.943 57.895 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.