>input_sequence_45554
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-----------------------------------------------------------CTCAGCCCGCTCCCCTGCCTG
CCTTCGATCCCCACCA-CCAGCCAGCGCCGATGCCGCGGCGAGCGATCGAGGTCCGGGCCGACGGCGCCGCGCCCAAGTG
GTGCATGTCGCTGCTGGAGAACACCTTCACGGCGTTCCTCAAGTCCCCCGGCGCCGACGCCGACGCCAAGGCCGTGTTCG
CGGAGGGCTCCCTGTTCAGCCCCTACCTGTTCGGCAAGTTCTTCGACCCGGCTGATGCGTTTCCGATGTGGGAGTTTGAG
TCCGACGTGCTGCTCGCCGCGCTCCGCCGCGGCGCCCGGACCACCGTCGACTGGGCCGAGAACGACTGCGAGTACTGCCT
CAGAGCCGACATACCAGGTACGTGCCCCGTACGCACACAGCTCGCTCCATCGATTGT-----------------------
----------------------------------------------TTCACAGTACAAGATCGGCTGTGTTCGTCTGTTG
TCGAAGATGACTTAACTTGAGTAGTAACAAAAGTACAGTAGTACATACGATCAGATTTTTGTTCAAGCTTCAAACTGAAA
CCTCTG-------TCCCAAGTGACAAAAGTACCAAAGTTTTAGCATAGATTCGCCGTTCCAGTAAATGCATGTATGATCT
GACCTCTGTACCAAGTGCACGGGTTCCACTCCCGGTCGATTT-AGCTGCGTTGATTGTCTAGGAATATATCGACCAGCAG
ATGTCTAGATGAACGAGCTTAGTAAGTTACCGTGCTCCTCTACTGTCCGTCGATCAACAACACCTCAGAAGATGCCACAC
GGCTTGTGTAGGAATCCAACACCTTTGCATTTCGCCACATATATC-AAGATGTTCTTACAAGATTGCAACTTGCTAGCTA
TCTA-----CTAGAGGGGTGTGCTCGTGTGTGCTTTCCCCGTTGCTATCCCTTTGCTTTTGCCGCAG---CACTATAGTC
ATGGTCACGTGCAGCCTTCTGTCGCCGTCGCTTTTTCTTGGCAAATTATTCGTTGCGTCTGCGTGTGGCGCACCACTTTG
ATCCAGACCAGTCTAGTGCCGCTTGCTTGCGGAAAAGCGAGCGGTAGATTGTGCCACACGATTGCCAAAACCAACAAAGC
CAAGCACACTTGCACCG--TTATCATATCGTATTGTACACATGGTACTTGTGCAGTATC----TAGCACTAAATTTTGCT
ATCTTTGACATGATCATCAGGTGGAAGAAAGTGCGACGTGGAGGTAAGCGGCGACGGCGCAAAGGTGGTGGACGTGAGCG
GGCTATGGCGGGCGCCGCCGGCGGACGGCCGGGACTGGCGCGCCGGCCGGTGGTGGGAGCACGGCTTCGTGCGGCGCGTG
GAGCTGCCGGAGGACGCCGACGGGGGCAGGGTGGAGGCCTACTTCGACGACGGTGCGGGGTCGCTGGAGATCAAGGTCCC
TAAGAGGAGCAGCGACACGCACCAACAAGCCTGAGAGAACCGGAACCTCTCGACGCCCGCAACTGGATTGGATCAGACTA
ACCGGATG-------CATTTGCCGGTGAAAGGCAATTATTCTCCTTCTGATGTGATGATGAGCAGTTGATGGCGACTGAA
AAGGCCGCGTAATCTCGGTAGAAATTCGGAAAGATATGGCTGAGACGAAAAGGAGCGAGGAT----TACCTATCTATCCA
TTGC--ATGATGTTGCAAATCCAATGTAGTAGTAGTAAAATATGTTCTTCAGTTCCACTGTGAATAAATGACTAATTAAT
CA------------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G319600
TTGAAAAAGACAACCAAAATTTAGAATTCCAAAATTTTGGCAAAAAATTGTCTCATTTTTTAAAAACAAGTGCAAA-TTT
TTAAACATGAAATTTCAAAAATTCCATATT-TTAAAATATTTTTTATTTTTCTGAAAACAAGAAAAAATTAAACATGGAA
ATTTTAAATTCCAATATTTTTGGAAATTAGGGAGCAAAAATTGAAAATTCAAGCGTATTTTTAAATTCCCATTTTAAGAA
AAATCTGAAAATTTTCTTAAAAGGCAAACAATTTTTGAAGTCCTGAAAATTTATAAATACATTGTTGTTTTTTTCTTAAA
TTGTGAACGTTGTTCTGTCATGCTAGAACAAATTTTAAATATTTGAACATTTTTCTTAAAATGGAACAATTCACATACAT
TTTATAAAAACACAA-TTTTAAATTTGAAAGAAGGGAACAATTTTTGAAGATTTGA----TTTTTTAAAATTTAATTTAT
ATATTAGTA-AAAAATAAAAGTAAAATAAACCG-AATTTAAAAAGAAACTGAAAAAT-GGAAAGAAAAAGAAAAGGACCA
AGATATCCCCCGAACGTTCGCTGTGAGGGGTTGGTATTTACAAACGTTTTAGATAATTTTTTTGGGGGAATCACACTCAC
TTTATTCCTCTATAGAAAGTTGTGAAGGAATTA---------CATGTGGGTTTATAAATGAAATATATGAGTATATGACG
CCGTTGTGGCAAAAAAGAAATCTATACATACCGGGCATCCTCGGCCCATTAGCCCGCCAAGTCCGCCGCGCCCGACGGAA
ATAAAGATCCAGGCGATGAAAAAGGCGGGAATCACACAGTAGATCAAAGCAGAGCCAGCCAACTCCGGGCGGAATCGCCT
CCCACGCTTTGCTTTCCGCAAAGGCCAATCAGCTCCACCACCACCACCGCCCCCGGCCGCTCCCCATGCCCCACCGCCAA
CTCCACCACCACCGTACGTGCCCCGTACTATATAACGCGAGCACCCTCGTCCACACCCCCTCAGCCCGCTCCCCTGCCTG
CCTTCGATCCCCACCA-CCAGCCAGCGCCGATGCCGCGGCGAGCGATCGAGGTCCGGGCCGACGGCGCCGCGCCCAAGTG
GTGCATGTCGCTGCTGGAGAACACCTTCACGGCGTTCCTCAAGTCCCCCGGCGCCGACGCCGACGCCAAGGCCGTGTTCG
CGGAGGGCTCCCTGTTCAGCCCCTACCTGTTCGGCAAGTTCTTCGACCCGGCTGATGCGTTTCCGATGTGGGAGTTTGAG
TCCGACGTGCTGCTCGCCGCGCTCCGCCGCGGCGCCCGGACCACCGTCGACTGGGCCGAGAACGACTGCGAGTACTGCCT
CAGAGCCGACATACCAGGTACGTGCCCCGTACGCACACAGCTCGCTCCATCGATTGT-----------------------
----------------------------------------------TTCACAGTACAAGATCGGCTGTGTTCGTCTGTTG
TCGAAGATGACTTAACTTGAGTAGTAACAAAAGTACAGTAGTACATACGATCAGATTTTTGTTCAAGCTTCAAACTGAAA
CCTCTG-------TCCCAAGTGACAAAAGTACCAAAGTTTTAGCATAGATTCGCCGTTCCAGTAAATGCATGTATGATCT
GACCTCTGTACCAAGTGCACGGGTTCCACTCCCGGTCGATTT-AGCTGCGTTGATTGTCTAGGAATATATCGACCAGCAG
ATGTCTAGATGAACGAGCTTAGTAAGTTACCGTGCTCCTCTACTGTCCGTCGATCAACAACACCTCAGAAGATGCCACAC
GGCTTGTGTAGGAATCCAACACCTTTGCATTTCGCCACATATATC-AAGATGTTCTTACAAGATTGCAACTTGCTAGCTA
TCTA-----CTAGAGGGGTGTGCTCGTGTGTGCTTTCCCCGTTGCTATCCCTTTGCTTTTGCCGCAG---CACTATAGTC
ATGGTCACGTGCAGCCTTCTGTCGCCGTCGCTTTTTCTTGGCAAATTATTCGTTGCGTCTGCGTGTGGCGCACCACTTTG
ATCCAGACCAGTCTAGTGCCGCTTGCTTGCGGAAAAGCGAGCGGTAGATTGTGCCACACGATTGCCAAAACCAACAAAGC
CAAGCACACTTGCACCG--TTATCATATCGTATTGTACACATGGTACTTGTGCAGTATC----TAGCACTAAATTTTGCT
ATCTTTGACATGATCATCAGGTGGAAGAAAGTGCGACGTGGAGGTAAGCGGCGACGGCGCAAAGGTGGTGGACGTGAGCG
GGCTATGGCGGGCGCCGCCGGCGGACGGCCGGGACTGGCGCGCCGGCCGGTGGTGGGAGCACGGCTTCGTGCGGCGCGTG
GAGCTGCCGGAGGACGCCGACGGGGGCAGGGTGGAGGCCTACTTCGACGACGGTGCGGGGTCGCTGGAGATCAAGGTCCC
TAAGAGGAGCAGCGACACGCACCAACAAGCCTGAGAGAACCGGAACCTCTCGACGCCCGCAACTGGATTGGATCAGACTA
ACCGGATG-------CATTTGCCGGTGAAAGGCAATTATTCTCCTTCTGATGTGATGATGAGCAGTTGATGGCGACTGAA
AAGGCCGCGTAATCTCGGTAGAAATTCGGAAAGATATGGCTGAGACGAAAAGGAGCGAGGAT----TACCTATCTATCCA
TTGC--ATGATGTTGCAAATCCAATGTAGTAGTAGTAAAATATGTTCTTCAGTTCCACTGTGAATAAATGACTAATTAAT
CAGCAGTGC-------------------CGCTGTTAGTTTGGGTCGTCCATCGAATGGGCTAGGGCATCGATATGATTCT
AGATTAGAGGAATATATAGGCAATGCGCGACTTTTGAAAGGTTGATTCTCTCGTTTCTTTCGGCAGGATGCATCTCCATC
AGTCGTCAGTCATCACCCCTAGCCCCTTTATCCCCAGTGGGCACATGAGCATCAGAGCTGTGACGAAAGCTGGGGTTGGC
TCTTTGAGATCCTCAGGTGATTATTCCGCAGAGAGGCACGTTGCCCAGATGATATTCCGTGGTTTCAGTCGATGATTTTG
CTTTACATTTCCTGTAAAAAGAGGCCCTGTTTTTTTTCTTGAGGATGCTCATGAGACCGGTGCATCATTA-TTTTGACAA
GAAAAGTTATAACTCAGGCCCCTCAACTATCACAAAGTCCAAATTTGATCCCTCAACTATAATCGTAGG-GGATTAGTTG
CATGGAAAAATGTTTGCAAACCAAGATAATATAATGGTTTAAGCATTAAGGATATTCATACACAAAATATTAATC-----
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---------------------CAGCCATGAAATTTGCAGTTAAGGTACTTCCTCCTGTCACAC---AGAACATTATGGAT
GACTTCACTATTTGGTCTCATCATTTTGGGAAAATGACACAAAAGGTTGATGCCAAATCCTA------------------
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------------------------------------------GCTTACTATGTACTCCCTCTGTAATATAATATAAGACC
TTTTAGATCACTAAGTAGTCGTGT---AAGGTCTTACATTAGTTTACAGAGATAATACCTCGCTGCACGCGTTTATGTGA
CTATGTAACAAGAGTGTAGTTGGAGTAGTTATCGTCACGGCCGGTGTTTGGTACACGGCAG-------------------
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--------GATTGCTAATTAACATCATGATGTCCTGTTTGTTGTGAATTAGGTGGTTGTTTTTCTACTTAAGTTCAATTG
AT---------TATCCCTAGTTCTTCCTAGTAGAATCATACTTCTAGTTTGCCCTTTTCCATACTTTTAGTATGTAGCGA
CCAGATCTCAAACGGTCCAATCTCTGTGCTC
>chr1D_4
---AAAAAGACAACCAACATTTAGAATTCCAAAATGTTGGCGAAAATTTGTGTCATTTTTAAAAAACAACTGCAATTTTT
TTAAACATGAAATTTTAAAAATTGCAAAAAATTTAAACATTTTATTTTTT-----AAACAAGAAAAAAAGTAAACATGAA
ATTTTAAATTCTGATATTTTTGGAAATTATCGACCAAAAATTGAAAATTGGAGCATTTTTTAAAATTCCAATTTTAAGTA
AAATCTAACATTTTA-TTAAAAAGCAAGCAATTTTTTAAATCCTGAAAATTTATAGATATAGTG--------TTTTTAAA
CTGTGAATTTTT---TGTCATGTTCAAACAATTTTAAAATATTTGAACATTTTTCTTAAAATGGAACAATGCCCATTCAT
TTTCCAAAAACACATTTTTTAAATTTGAAAGAAGGGAACAATTTTTGAAGACTTGAAGATTTTGGAAAATTTGAATTTAT
TAAAAAGAATAAAAGTAAAAGTAAAATTAACCAAAATTTAAAAAGAAACTGAAAAAAAGGAAAGAAAAGGAAAAGGACCA
CAATATCCTGCGAACGTTTGCTGTGAGGTTTTAGTATTTGCAAACGTTTTAGACAATTGTGTTTGGGGAATCACACTCAC
TTTATTTCTCTATAGAAAGTTGTAAAGGAATTACATTTGGGTCATGTGGGTTTATAAATGA----------TATATGACG
GCGTTGTGGC-AAAAAATAATCTACCCATACC-GGCATCCGCGGCCCATTAGCCCGCCAAGTCCGCCGCGCGCAATGCAA
AGAAAGATCCAGGGGAAGAAAAAGGCGGGAATCACACAGCAGATCGAAGCAGAGCCAGCCAACCCCAAGCGGAATCGCCT
CCCACGCTTTGCTTTCCGCAAAGGCCAATCGACTCCACCACCACCACCGTCCCCGGCCGCTCCCCATGCCCCACCGCCAA
CTCCACCACCACCGTACGTCCCCCGTACTATATAACGCGAGCACCCTCGTCCAGACCCCCTCAGTCCCCTGCCCTGCCTG
CCTTCGATCCCCACCAGCCAGCCAGCGCCGATGCCGCGGCGAGCGATCGAGGTCCGGGCCGACGGCGCCGCGCCCAAGTG
GTGCATGTCGCTGCTGGAGAACACCTTCACGGCGTTCCTCAAGTCCCCCGGCGCCGACGCCGACGCCAAGGCCGTGTTCG
CGGAGGGCTCCCTGTTCAGCCCCTACCTGTTCGGCAAGTTCTTCGACCCGGCCGACGCGTTCCCCATGTGGGAGTTCGAG
TCGGACGTGCTGCTCGCCGCGCTCCGCCGCGGCGCCCGGACCACCGTCGACTGGGCCGAGAACGACTGCGAGTACCGCCT
CAGAGCCGACATACCAGGTACGTGCCCCAATCCC---CAGCTCGCTCGATGGATGATTGATTTCAGTACCA---------
------------------------CATAAAAGATGCTAGTTCAGGCTTCACAATACAAGATCGGCCGTGTTCGACTATAG
TTGCAGGTGACTTAACTTG---AGTAACAAAAGTACAGTAGCACATATGATCAGATTTTCGTTCAAGCTTCAAACTGAAA
CCTCCG-------TCCCAAGTGACAGAAGTACCATAGTTTTAGCATAGATTCGCCGTAGTAG-GAATGCATGCATGATGT
GGCCTCTCTCTGTACCAAGTTCAGTGCAGCGTTCTCTGTACCAAGCTGCGTCGATTCTCTAGGAATATATCGATGAGCAG
ATGTCTAGATGAACCAGGATAGTAAGTTACCGTGCTCCTCTGCCACACGA------------------------------
--CTTGTGTAGGAATCCAACACCTTTGCATTTCGCCACATATATTAAAGATGTTCTTACAAGATTGCAACTTGCTAGCTA
GCTATCCATCTAGAGGGGTGTGCTCGTGCGTGCTTTCCCCGTTGCTACCCCTTTGCTTTTGCCGCAGCAGCACTATGGTC
ATGGTCACGTGCAGCCTTCTGTCGCCGTCGC-TTTTCTTGGCAAATTATTCGTTGCGTCTGCGTGTGGCGCCC-------
-------------------------CTTGCGGAAAAGCGAGCGGAAGATTGTGCCACACGATTGCCAAAACCAACAAAGC
CAAGCACACTTGCACCG--TTATCATATCGTATTGTACATATGGTACTTGTGCAGTATC----TAGCACTAAG-TTTGCT
ATCTTTGACATGATCATCAGGTGGAAGGAAGTGCGAGGTGGAGGTGAGCGGCGACGGCGCAAAGGTGGTGGACGTGAGCG
GGCTGTGGCGGGCGCCGCCGGGGGACGGCCGGGACTGGCGCGCCGGCCGGTGGTGGGAGCACGGCTTCGTGCGGCGCGTG
GAGCTGCCTGAGGACGCCGACGGGGGCAGGGTGGAGGCCTACTTCGACGACGGCGCGGGGTCGCTGGAGATCAAGGTCCC
CAAGAGGAGCAGCGACGCGCACCAGCAAGCCTGAGAGAATCGGAACATCTCGACGCTCGCAACTGGATTGGATCAGACTA
ACCGGATG-------CATTTGCCGGTGAAAGTGAATTATTCTCCTTCTGATGTGATGATGAGCAGTTGATGGCGACTGAA
AAGACCGCGTAATCTCGGTAGAAATTCGGAAAGATATGGCTGAGACGAAAAGGAGCAAAGAT----TACCCATCTATTGC
ATGATGATGATGTTACAAGTCTGATGT-----------AATATGTTCTTCAGTT-----------AAATGGCTAATTAAC
CAGCAGTGTGTTGCAAGCACGAAAGCGTCGCCGTCAGTTTCGGTCGTCGACCGGATGGGCTGCGGCATCGATATGGTTCT
AGATTAGAGGAATATATGGGCAATGCGCGACTTTTGAAAGGTTGATTCTCTCATTTCTTTCGGCACGATGCATCTCCATC
AGCCGTCAGTCATCGCCCCTAGCCCCTTTATCCCCAGTCGGCACATGAGTATCAGAGCTGTGACGAAAGCTGGGGTTGGC
TCTTTGAGATCCTCAGGTGATTATTCTGCTGAGAAGCACGTTGGCCAGATGATATTCGATGGTTTCGGGCGACGA-TTTG
CTTTAGATTTGTTGTAAAATAATGCCCTGTTTTGTA---TGAATATACTCACAAGACCGGTGCATCACAATTTTTGACAA
GAAAAATTATAACTCAGGTCCCTCAACTATCGCAAAGTCCAAATTTGGTCCCTCGACTATAATAATAGGGGGATTAGTTG
CATGGAAAAATGTTTGCAAAAGAAGATAATGTGATGGTTTATGCATTAAGGATATTCATACACAAAATATTTATCT----
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----------------------AGCCAAGAAATTTGCAGTTAAGGTACTTCTTTCTGTCACACACAAGAACATTATGGAT
GA-TTCACTATTTGGTCTCATCGTTTTGGGAATACGATACAAAAGGTTGATGCCAAATCACTAGTAGAAAACAGGGCTTT
GGTCACAGGGCAATATTTCACATTAGTCCCGGTTCAGTCACGAACCGGGACTAATGTGAGCATTGGTCCCGGTTCGTGCG
GCTAAGGCATTAGTCCCGGTTCACCTGAGCCCTTTAGTCCCGGTTTGAGACACGAACCGGGACTAAAGGGTGCGATGCCC
ATTAGTACCGGTTCGTGGCACCAACAGGTACTAAAGGTTAGACCTTTAGTCCCGGTTCGAGCCACCAACCGGTACTAATG
GGGTTTGAGGCATTAGTATCGGTTCATGGCACGAACCGGTACTAAAGGGCCCATTTTCAAACCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGTTTTTTGAATTTTGGTCAAATCTGGTCAAACTGTGGTCAAACTGTGATC
AAACTAATTATTCAAGAATATTAGTGTTACTAAATAATTATTTCAGTTTTTTTGAATTTTGGTCAAATCTGGTCAAACTA
TGGTCAAACTATGGTCAAACTACTTA-------------------------------------------------TTCAA
GAAATATTAGTGTTACTAAATAATTATTTCAGTTTTTTTGAATTTTGGTCAAATCTGGTCAAACTGTGGTCAAACAATGG
TCAAACTAATTATTCAAGAAATATTAGTGTTACTAAATAATTATTTTAGTTTTTTGAATTTTGGTCAAACTACTTATTGA
AGAAATATTAGTGTTACTAAATAATTATTGTTTTTTAAAACAATAGTTTCAAACTCAAACAGTGAAATGTGTGACTTCAT
GCTCAAGCTAAATTCCTGAGGGTTAATAGGATTGACATCTTAATATTGTCAGGAAAACAACAAGTGCAGACTTGGAAACG
AGGGAGAATAGAACCCGGAAGTTAAGCGTGCTCAGGCTGGAGTAGTGAGAGGATGGGTGACTGTCCGGGAAGTTAGATGA
TTTGGAATGATGAGGGGTGATTAGAGATTAGAGGTTAAATTGAGTAGTGATGAGGGGTGGAGATTAGAGGTTAAAATAAT
TAAGAAATTTGAAAATATAAAAAATTC-----------------------------------------------------
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-----AAAAAAAAACTAAAAAAAAATCATAAAATTTTCTTTAGTCCCGGTCTGCCCCTACAGGGGGTCCTGTTCATCCAA
CCCTCCACGGACAAAAGGCCTTTTTTCTACTAGTGAATCCTGGCTTACTATGTACCCCCTCTGTAATATAATATAAGACC
TTTAAGATCACTAAAGTAGTGATCTAAAAGGTCTTACATTAGTTTACAGAGATAATACCTCTCTGCACGCGTTCATTTGA
CTATGTAACAAGAGTGTAGTTGGAGTAGTTATCATCACGGCCGGTGTTTGGTACACGGCGG-------------------
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--------GGTTGCTAATTAAAATCATGATGTCCTGTTTGTCGTGAATTAGGTGGTTGTTTTCTTACTTAAAGGTCAATT
GATTAATTTGATATCCCTAGTTCTTCCTAGTAGAATCATACTTCTAGTTTACCCTTTTCCATACTTTTAGTAT-------
-------------------------------
>chr1B_694
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------------------------------------------------------------------------ATATGACG
ACCCTGGGGCAAAAAAATAATCTACACATACC-GGCATCCTCGGCCCATTAGCCAGCCAACTCCGCCGCGCAAT------
-----------GGCGAAGAAAAAGGCGGGAATCACACAGTAGATCAAAGCAGAGCCAGCCAACTCCAAGCGGAATCGCCT
CCCACGCTTTGCTTTCCGCAAAGGCCAATCAGCTCCACCACCACCACCGTCCCCGGCCGCTCCCCGTGCCCCACCGTCAA
CTCCACCACCACCGTACGTCCCCCGTACTATATAACGCGAGCACCCTCGTCCAGACCCCTTCAGTCCCCTCCCCTGCCTG
CCTTCGATCCTCACCAGCCAGCA----CCGATGCCGCGGCGAGCGATCGAGGTCCGGGCCGACGGCGCGGCGCCCAAGTG
GTGCATGTCGCTGCTGGAGAACACCTTCACGGCGTTCCTCAAGTCCCCCGGCGCCGACGCCGACGCCAAGGCCGTGTTCG
CCGAGGGGTCCCTGTTCAGCCCCTACCTCTTCGGCAAGTTCTTCGACCCGGCCGACGCGTTCCCCATGTGGGAGTTCGAG
TCGGACGTGCTGCTCGCCGCGCTCCGCCGCGGCGCCAGGACCACCGTCGACTGGGCCGAGAACGACTGCGAGTACTGCCT
CAGAGCCGACATACCAGGTACGTGCCCCGTACGCACACAGCTCGCTCGCTCGATCGATCAATTGATTCTAGTATCATCAC
GTTCTTCTAGTATCATCACTACAGCATAAAAGATGCTTGTTGAGGCTTCACAATACAAGATCGGCTGTGTTCGTCTGTTG
TTGAAGATGACTTAACTTG---AGTAACAAAAGTACAGTAGTACATATGATCAGATTTTCGTTCAAGCATCAAACTGAAA
CCTCTGTCCCAACTCCCAAGTGACAAAAGTACCATAGTTTTAGCATAGATTCGCCGTAGTAG-AAATGCATGCATGATGT
GGCCTCT--CTGTACCAAGTTCAGTGCAGCGTTCTCTGTACCAAGCTGCATCGATTCTCTCGGAATATATCGATGAGCAG
ATGTGTAGATGAACCAGGATAGT-AGTTACCGTGCTCCTCTACCACACGA------------------------------
--CTTGTGTAGGAATCCAACACCTTTGCATTTCGCCACATATGTT-AAGATGTTCTTACAAGATTGCAACTTGCTAGCTA
TCCATCTAGAGGGGC-GGTGTGCTCGTGTGTGCTTTCCGCGTTGCTATCCCTTTGCTTTTGCCGCAG---CACTATGGTC
ATGGTCACGTGCAGCCTTCTGTCGCCGTCGC-TTTTCTTGGCAAATTATTCGTTGCGTCTGCGTGTGGCGCACCACTTGG
ATCCAGACCAGTCTAGTGCCGCTTGCTTGCGGAAAAGAGAGCGGTAGATTATGCCACACGATTGCCAAAACCAACAAAGC
CAAGCACACTTGCACCGCGTTATCATATCGTATTGTACACATGGTACTTGTGCAGCATCGACCTAGCACTGAGTTTTGTC
ATCTTTGACATGATCATCAGGTGGAAGAAAGTGCGACGTGGAGGTAAGCGGCGACGGCGCAAAGGTGGTGGACGTGAGCG
GGCTATGGCGGGCGCCGCCGGCGGACGGCCGGGACTGGCGCGCCGGCCGGTGGTGGGAGCACGGCTTCGTGCGGCGCGTG
GAGCTGCCGGAGGACGCCGACGGGGGCAGGGTGGAGGCCTACTTCGACGACGGTGCTGGGTCGCTGGAGATCAAGGTCCC
CAAGAGGAGCAGCGACGCGCACCAACAAGCCTGAGAGAATCGGAACCTCTCGACGCCCGCAACTGGATTGGATCAGATTA
ACTGGAGGACCGCCTCATTTGCCGGTGAAAGGCAATTATTCTCCTTCTGATGTGATGATGAGCAGTTGATGGCGACTCAA
AAGACCGCGTAATCTCTGTAGAAATTCGGAAAGATATGGCTGAGACGAAAATCAGCGAGGATTACCTACCTATCTATCCA
TTGC--ATGATGTTGCAAATCCAATGTA---GTAGTAAAATATGTTCTTCAGTTCCACTGTTACCAAATGACTAATTAAT
CAGCAGTGC-------------------CGCTGTCAGTTTCGGTCGTCGATCGAATGGGCTAGGGCATCGATATGATTCT
AGATTAGAGGAATATATAGACAATGCGCGACTTTTGAAAGGTTGATTCTCTCATTTCTTTCGGCACGATGCATCTCCATC
AGTCGTCACTCATCACCCCT-GCCCCTTTATCCCCAGTGGGCACATGAGCATCAGAGCTGTGACGAAAGCTGGGGTTGGC
TCTTTGAGATCCTCAGGTGATTATTCTGCAGAGAGGCACGTTGCCCAGATGATATTCCATGGTTTCAGACCATGATTTTG
CTTTAAATTTGTTGTAAGAAAGGCCCTG--TTTTTTTCTCGAGGATACTAATGAGACCGGTGCATCATTATTTTTGACAA
GAAAAATTATAACTCGGGTCCCTCAACTATCACAAAGTCCAAATTTGGTCCCTCAACTATAATCATAGAGGGATTAGTTG
CATGGAAAAATGTTTGCAAACCAAGATAATATAATGGTTTAGGCATTAAGGATATTCATACACAGAATATTTAGAGGGTG
CTTGGATACGTTTTAGTCCCATGACTAAAAATAGTGGGACTAAAACTTGCTAGCCTCACCCATGCTTGGATCCAAATACT
AAAAAGACTAAAATCAAGTTATTGAGCATTTATTATCCTCCAAACCCTCCAATCCAGAATTCGCATGTGTTAAAGGAGAG
GAATTAAATGAGGAGAGAGAGGGCTAATACATATTTTAGTAGGTTTCCTATGACTAAAAAAATTTAGCCTCAAGACTAGT
CCTAGCCTCTTTTTAGTCAGGGATGCTTGGAACTTTAGCCTTTAAAAGAGACTATTTTCAGTCAGACTAAAAATAGTCCC
TTGGATCCAGGCACCCTCTATCAGCCATGAAATTTGCAGTTAAGGTACTTCTTCCTGTCACACACAAGAACATTATGGAT
GGCTTCACTATTTGGTCTCATCGTTTTGGGAAACACTTTTGCTTCGGTACACCCCCTAACACATTGACGGCTGAGATCTC
TCCATACACCTTCATAATAAAAGGTAGGATGGTATTTTTCATTCGCGCCGATACGCGGTCTGCATACATATACACGGCGC
CTTTTTTTTCCTTGCGACACCTTCCCGAACTGAGACGGAACCTTCCGCCCAACCCGAACTTTTTTCCACTTAAATTCATG
AACATTTCCTTAAATATGCAAACTTTGTTTTCAAATTCACGAACCTTTTTCCCTATCTAGGAACTCTGTACTTT------
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--------------------------TTTCTATTCTATTTTTCCTGTTTTGTTCATTTTTACTCATTGTAAAACCTGTTT
TAAAATTTGAATTTTTTTGGAATACCAGAAAATATTTTATTTCCAATTTTTTTACAAGTTATGAAAATTTTGGATTTCAA
AAAATATTCTCAC-------------------------------------------------------------------
---------------------TTTTGATTTTTTTAAAAAGTTAAATTTTTTTCTTGTTTTAAAAATGTTGATAAATTTTT
AAGAAGTACGTGGTTTGCAATTTGTGCACAATATTTGGGAATTTATTAAATTTTTTGGAAAAAGTGTTCATGTATATAAA
AATTCATACACAATTTGAAATTCCAAAATTGTTCACAAATTTTAAG----------------------------------
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-------------------------------------------------------------------------AAATAAT
TAAGATATAAGAAAATGTTCATGTTGAATTATAATGATAGAAATTGCTAATAACAAAAGCCTTGCCCTACCGGCTTACCT
GAACCACCAGCTTTGAACATGATGCGCTTCTTGCCATGCATGAAATGACATCAAATCTTGCCAGCATGTGGGAATGCTCA
TGGCAGGACTCCTTGCAAAATTTGAAGGAATTTAGACACCGAACGCACGTTGTGTCACATTCGGCTAGTGTTTTAGGTTT
TTTTCACCAGGAGAACCCTTGAAAATGCATAAAATATGAGAAGTCAATGACATTTATCATGGATGCTTGGTATGGTGATG
CTAATGTGCAAAAAACATTTGGGTCCATTCTATTGATGTGAAAAACGTGCATCCAGACTTGCCCTACCGGCCAACCCGAA
CCACGACCATTGAACATGGTGTGCCTCTTGCCATGCATGAAATGACACCAAATTTTGTCAGCATGTGGGCGTGCTCATGG
CAGGCCTCCATGCAAAATTTAAAGGAATTCGGACACCGAACGCACGTTGTGTCACATTCGGAGAGTGTTTAGGGTTTTTT
TTCACTAGAAAAACCCTTGAAAATGCATAAAATGTCAGACCTCAATGAAATTTATCATGGATGCTTGGTATGGTGATGCT
AGTGTATGGGAAAAAATTGGGTCCATTTTATTGATGTGAAAAAGTGCTTCAGACTTTCCCTACCGGTCAATTCGAGCCAC
CATCTTTGAACATGATGTGCTACTTGCCATGCATGAAATGAGATCAATTTTTTTCAACATGTGGGCATGCTCATGACAGG
CCTCCATGCAAAATTTGAAGGAATTCGGGCACCGAACGCATGTTGCATCATGTTTGGCTAGTGTTTTAGGGGTTTTTTTC
ACCAGGAAAACCCTAGAAAATGCATAAAATGTCAAAACTCAACGAAAAATTTCATGGAATCTTGGCATGTGATACTAGTG
TGTGCAAAAAATTTGGGTCCATTTTAGTGGTGTGAAAAAAATGCATCCAGACTTCCCTACCGGCCTACCCGAACCACTAG
CTTTGAATATGATGTGCTTCTTGCCATGCATGAAATGACAACAAATTTTGCCAACATGTGGGCATGCTCATGGTAGGCCT
CCATACAAAATTTGAATGAATTCAAACACCGAACACACATTGCGTTACGTTCGGCTTGAGTTTTAGGGGTTTTCATCAGG
AAAACCCTAGAAAATGCATAAAATATCAAAACTCAATGAAAATTTTCATGGATTCTTGACATGGTGATGCTAGTGTGTGG
AAAAAATCTGGGTCCATTTTATTCTTGTGGAAAAATAAGTGCATCCAGACTTACCCTACCGGCCTACCCGGACCACCACC
TTCGAACATGGTTTGCTTCATGTCATGTATGAAATGGCACCAAATTCTGGCAGCATGTACGCATACTCATGGAATACCTC
CATGCAAAATTTGAACGAATTCCGACACCAAACGGAAGTTGCGTCACGTTCGGCTAGTGTTTTATGTTTTTTTCACCGGA
AAAGCCCTAGAAAATGCATAAAATGTCAGAACTCAATGAAATTTATCATGGATGTTTGGCATGGTGATGCTAGTGTGTGG
AATTTTTTTGGTCCATTGTATTGATGTGAGCATTTTTATAAAAAGAAAAATAACAGAAAAGGAAAAAAGAGAAACAACAT
GAATGAAAAAGAAACAAAAAACGAACAATAAACCGGTCGCTGATTGATTTATTGTTATTTTTCTATTAATACATGTTTAG
TAATATTAAAAGTGTTTGCTTTTTTTATGAGAGCATGTTTCTATTTAAACGAACAATAAACAAACATTTTTGTTTGAACG
AACATTTTTTTTATTTAGTAGAGCTTTAGAAATTTAATGATATTGATGTGAGCATTTTTCTATTTAAATGAACAATTTTT
TGACATATATGTAAAAAAATAAAATATGTGAATATTTTTTACTTTATGAAAAAAAATTAAAAGTGAAGATTTTTGAAATT
TTGAACACAATTTAATAAATGTGAGCATTTTTTTGAAAAAGAGAAACGAAAAAAGAAAAAAAAATCTGATTCCAGCCGCG
AACTAAAGTAGAAGATAACAAAAGAAAGAAGTAAATACGCACAATCATTAGGATGTCCTAGTTAGTTAGTGTACGATGCC
TCGTATGTGTCACATATGCAGATGGGTATACCGTTTGAAATGATCACACTGCCCTTATACGGTTTGTGGAGGGGGGGTTA
CCGCAGCAGGTTGCTAATTAAAATCATGATGTTCTGTTTGTCGTTAATTAGGTGGTTGTTTTTTTACTTAAAGTCCAATT
GATTAATTTGATATCCCTAGTTCTTCCTAGTAGAATCATACTTTTGGTTTACCCTTGTCCATACTTTTAGTAT-------
-------------------------------
>SNPs
SSS--------------S-----------------S-----S----S----S--------S--------S-----S----
---------------S-------S--S-SS---S---S-----S-S----SSSSS-------------SSS--SSSS---
-----------SS----------------SS--S---------------SS---S-S----S-------S--------S-
------S-S-S---SS------S----S--------S--S---------------S---S-S--SSSSSSSS--S-----
S------SS--SSSS-------S-SS-----S---S----------------------------------S-S---S---
---SS---------S------------------------------------S-----------SSS---S--S-------
SS-SS--S------S------------S----S-----------------------S-----------S-----------
SS------SS--------S---------SS--S------S-------------S----S-S--S----------------
------S----------------S-------------------------------------SSSSSSSSSS---------
S---------------SS------S-------S--------------------------------------S-S-S-S--
-S--------------S-------------------------------------------------SS------------
-------------------------------------------------S------------------------------
-------------------S---------------------------------S----------S--S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S--S-----S--S-----------S---
--S-----------------------------------------------------------------------------
-----------------------------------------------S------S-------------------------
----------------------------------------------------S---------------------------
-S-----------------SSS-------------------------S-----------S--------------------
----------------------------------S----------------------SSS--S---------S-----S-
-S-----S-SSSS-SSSSSSSSSS-S--SSSSSSSSS-SSSS---------S----S----------------SS-----
--------------S--SS------------------------SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------S-----------------------------------
----------------------------------------------------------------------------S---
-------------------------------S----------------------------------------------S-
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S---------------S----------------------S----------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
----------------------------SSS------------------------------S-SS---------------
----------------------------------S-----S-------S-------------------------------
----------------------------------------------------S------------S--------------
--------------------------------------------------------------------------------
--------------------------S-------------------------------S---------S-----------
-----S----SS--------S-------------------------S---------------------------------
-----S------------S----------------------------S----------------S---------------
-----------------------------------------S-----------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
----------------------S-----------S--S----------------------SS------------------
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-------------------------------------------------------S------------------------
---S----------S----S-S-S-------------------------------------S-----------S--S---
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-----------S-------------------S---------------------S-------SS--S-S-S
SS------------------------------------------------S----------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_590
--------------------------------------------------------------------------------
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-----------GAACGTTCGCTGTGAGGGG--------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1713
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--------------------------------CGGTCGATTTAGCTGCGTTG----------------------------
--------------------------------------------------------------------------------
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-------------------------------
>forward_1701
--------------------------------------------------------------------------------
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-ACCTCTGTACCAAGTGCACG-----------------------------------------------------------
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-------------------------------
>reverse_2849
--------------------------------------------------------------------------------
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------------------------------------------------CATCGAATGGGCTAGGGCAT------------
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-------------------------------
