Multiple sequence alignment - TraesCS1A01G315800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G315800 chr1A 100.000 2582 0 0 1 2582 507961056 507958475 0.000000e+00 4769
1 TraesCS1A01G315800 chr1B 87.209 1634 193 11 459 2084 554498654 554497029 0.000000e+00 1845
2 TraesCS1A01G315800 chr1D 87.016 1471 147 29 624 2084 411282436 411281000 0.000000e+00 1618
3 TraesCS1A01G315800 chr1D 89.493 533 47 6 1976 2499 411281003 411280471 0.000000e+00 665
4 TraesCS1A01G315800 chr1D 88.235 272 25 3 2307 2578 411280474 411280210 4.150000e-83 318
5 TraesCS1A01G315800 chr1D 87.912 182 14 3 2070 2243 265937772 265937591 9.360000e-50 207
6 TraesCS1A01G315800 chr7A 97.892 332 6 1 1 331 152775171 152775502 8.010000e-160 573
7 TraesCS1A01G315800 chr7A 97.879 330 5 2 1 329 444385301 444385629 1.040000e-158 569
8 TraesCS1A01G315800 chr5A 97.885 331 6 1 1 330 536023009 536023339 2.880000e-159 571
9 TraesCS1A01G315800 chr5A 97.879 330 6 1 1 329 463484949 463485278 1.040000e-158 569
10 TraesCS1A01G315800 chr5A 89.139 267 21 3 1985 2243 238801365 238801099 2.480000e-85 326
11 TraesCS1A01G315800 chrUn 97.879 330 6 1 1 329 64824003 64824332 1.040000e-158 569
12 TraesCS1A01G315800 chrUn 88.764 267 22 3 1985 2243 40103254 40103520 1.150000e-83 320
13 TraesCS1A01G315800 chr6D 97.872 329 6 1 2 329 382941517 382941845 3.730000e-158 568
14 TraesCS1A01G315800 chr6D 95.429 350 13 3 2 350 143388409 143388756 2.900000e-154 555
15 TraesCS1A01G315800 chr5D 97.872 329 6 1 2 329 530552709 530552381 3.730000e-158 568
16 TraesCS1A01G315800 chr4D 97.590 332 7 1 2 332 374020525 374020194 3.730000e-158 568
17 TraesCS1A01G315800 chr4D 88.015 267 24 3 1985 2243 135022859 135023125 2.500000e-80 309
18 TraesCS1A01G315800 chr2A 89.139 267 21 5 1985 2243 735154194 735154460 2.480000e-85 326
19 TraesCS1A01G315800 chr6B 88.764 267 22 5 1985 2243 388197492 388197758 1.150000e-83 320
20 TraesCS1A01G315800 chr4B 88.764 267 22 3 1985 2243 252951557 252951823 1.150000e-83 320
21 TraesCS1A01G315800 chr3D 88.764 267 22 5 1985 2243 154707019 154706753 1.150000e-83 320
22 TraesCS1A01G315800 chr3D 87.793 213 18 3 2039 2243 213375293 213375505 2.570000e-60 243
23 TraesCS1A01G315800 chr2B 88.764 267 22 1 1985 2243 500737151 500736885 1.150000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G315800 chr1A 507958475 507961056 2581 True 4769 4769 100.000 1 2582 1 chr1A.!!$R1 2581
1 TraesCS1A01G315800 chr1B 554497029 554498654 1625 True 1845 1845 87.209 459 2084 1 chr1B.!!$R1 1625
2 TraesCS1A01G315800 chr1D 411280210 411282436 2226 True 867 1618 88.248 624 2578 3 chr1D.!!$R2 1954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.0 12.58 0.00 42.62 4.44 F
1171 1175 0.031994 ACAACAAGCAATGGCCGTTC 59.968 50.0 7.40 3.12 42.56 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1517 0.179045 CTACCCTTTGCCGGATCCTG 60.179 60.0 5.05 4.14 0.0 3.86 R
2222 2360 0.108472 CTCACCATGAAGAGCTCGCA 60.108 55.0 8.37 11.37 0.0 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.709600 GATACTTGACATAAGAAAAGCTTTAGC 57.290 33.333 13.10 7.97 38.05 3.09
28 29 7.510549 ACTTGACATAAGAAAAGCTTTAGCA 57.489 32.000 13.10 0.00 45.16 3.49
29 30 7.588512 ACTTGACATAAGAAAAGCTTTAGCAG 58.411 34.615 13.10 3.65 45.16 4.24
30 31 7.445402 ACTTGACATAAGAAAAGCTTTAGCAGA 59.555 33.333 13.10 0.00 45.16 4.26
31 32 7.133891 TGACATAAGAAAAGCTTTAGCAGAC 57.866 36.000 13.10 2.56 45.16 3.51
32 33 6.128553 TGACATAAGAAAAGCTTTAGCAGACG 60.129 38.462 13.10 1.72 45.16 4.18
33 34 5.932303 ACATAAGAAAAGCTTTAGCAGACGA 59.068 36.000 13.10 0.00 45.16 4.20
34 35 6.426937 ACATAAGAAAAGCTTTAGCAGACGAA 59.573 34.615 13.10 0.00 45.16 3.85
35 36 4.733972 AGAAAAGCTTTAGCAGACGAAC 57.266 40.909 13.10 0.00 45.16 3.95
36 37 4.381411 AGAAAAGCTTTAGCAGACGAACT 58.619 39.130 13.10 0.00 45.16 3.01
37 38 5.539048 AGAAAAGCTTTAGCAGACGAACTA 58.461 37.500 13.10 0.00 45.16 2.24
38 39 5.405873 AGAAAAGCTTTAGCAGACGAACTAC 59.594 40.000 13.10 0.00 45.16 2.73
39 40 3.936372 AGCTTTAGCAGACGAACTACA 57.064 42.857 4.33 0.00 45.16 2.74
40 41 3.576648 AGCTTTAGCAGACGAACTACAC 58.423 45.455 4.33 0.00 45.16 2.90
41 42 2.341760 GCTTTAGCAGACGAACTACACG 59.658 50.000 0.00 0.00 41.59 4.49
42 43 3.818387 CTTTAGCAGACGAACTACACGA 58.182 45.455 0.00 0.00 34.70 4.35
43 44 4.413087 CTTTAGCAGACGAACTACACGAT 58.587 43.478 0.00 0.00 34.70 3.73
44 45 2.546195 AGCAGACGAACTACACGATC 57.454 50.000 0.00 0.00 34.70 3.69
45 46 2.085320 AGCAGACGAACTACACGATCT 58.915 47.619 0.00 0.00 34.70 2.75
46 47 2.488545 AGCAGACGAACTACACGATCTT 59.511 45.455 0.00 0.00 34.70 2.40
47 48 2.594654 GCAGACGAACTACACGATCTTG 59.405 50.000 0.00 0.00 34.70 3.02
48 49 3.669824 GCAGACGAACTACACGATCTTGA 60.670 47.826 6.16 0.00 34.70 3.02
49 50 4.092120 CAGACGAACTACACGATCTTGAG 58.908 47.826 6.16 2.18 34.70 3.02
50 51 2.847133 GACGAACTACACGATCTTGAGC 59.153 50.000 6.16 0.00 34.70 4.26
51 52 2.488545 ACGAACTACACGATCTTGAGCT 59.511 45.455 6.16 0.00 34.70 4.09
52 53 3.688185 ACGAACTACACGATCTTGAGCTA 59.312 43.478 6.16 0.00 34.70 3.32
53 54 4.335874 ACGAACTACACGATCTTGAGCTAT 59.664 41.667 6.16 0.00 34.70 2.97
54 55 4.672862 CGAACTACACGATCTTGAGCTATG 59.327 45.833 6.16 0.00 0.00 2.23
55 56 3.971150 ACTACACGATCTTGAGCTATGC 58.029 45.455 6.16 0.00 0.00 3.14
56 57 3.634448 ACTACACGATCTTGAGCTATGCT 59.366 43.478 6.16 0.00 43.88 3.79
57 58 3.533606 ACACGATCTTGAGCTATGCTT 57.466 42.857 6.16 0.00 39.88 3.91
58 59 4.655762 ACACGATCTTGAGCTATGCTTA 57.344 40.909 6.16 0.00 39.88 3.09
59 60 4.615949 ACACGATCTTGAGCTATGCTTAG 58.384 43.478 6.16 2.28 39.88 2.18
60 61 3.986572 CACGATCTTGAGCTATGCTTAGG 59.013 47.826 8.57 0.00 39.88 2.69
61 62 3.891977 ACGATCTTGAGCTATGCTTAGGA 59.108 43.478 8.57 0.00 39.88 2.94
62 63 4.526262 ACGATCTTGAGCTATGCTTAGGAT 59.474 41.667 8.26 8.26 41.91 3.24
63 64 5.011533 ACGATCTTGAGCTATGCTTAGGATT 59.988 40.000 9.51 0.00 40.04 3.01
64 65 5.348179 CGATCTTGAGCTATGCTTAGGATTG 59.652 44.000 9.51 8.97 40.04 2.67
65 66 4.965814 TCTTGAGCTATGCTTAGGATTGG 58.034 43.478 8.57 0.00 39.88 3.16
66 67 3.777106 TGAGCTATGCTTAGGATTGGG 57.223 47.619 8.57 0.00 39.88 4.12
67 68 3.048600 TGAGCTATGCTTAGGATTGGGT 58.951 45.455 8.57 0.00 39.88 4.51
68 69 3.071602 TGAGCTATGCTTAGGATTGGGTC 59.928 47.826 8.57 2.08 39.88 4.46
69 70 3.321950 AGCTATGCTTAGGATTGGGTCT 58.678 45.455 8.57 0.00 33.89 3.85
70 71 3.718956 AGCTATGCTTAGGATTGGGTCTT 59.281 43.478 8.57 0.00 33.89 3.01
71 72 3.817647 GCTATGCTTAGGATTGGGTCTTG 59.182 47.826 8.57 0.00 0.00 3.02
72 73 4.687219 GCTATGCTTAGGATTGGGTCTTGT 60.687 45.833 8.57 0.00 0.00 3.16
73 74 3.350219 TGCTTAGGATTGGGTCTTGTC 57.650 47.619 0.00 0.00 0.00 3.18
74 75 2.026262 TGCTTAGGATTGGGTCTTGTCC 60.026 50.000 0.00 0.00 0.00 4.02
75 76 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
76 77 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
77 78 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
78 79 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
79 80 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
80 81 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
81 82 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
82 83 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
83 84 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
84 85 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
85 86 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
86 87 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
87 88 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
88 89 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
89 90 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
90 91 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
91 92 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
92 93 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
93 94 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
94 95 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
95 96 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
96 97 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
104 105 7.571071 ATCATTCTCCTAATGATGTGATCCT 57.429 36.000 11.39 0.00 43.52 3.24
105 106 6.766429 TCATTCTCCTAATGATGTGATCCTG 58.234 40.000 0.00 0.00 32.21 3.86
106 107 6.328410 TCATTCTCCTAATGATGTGATCCTGT 59.672 38.462 0.00 0.00 32.21 4.00
107 108 6.566079 TTCTCCTAATGATGTGATCCTGTT 57.434 37.500 0.00 0.00 0.00 3.16
108 109 7.675161 TTCTCCTAATGATGTGATCCTGTTA 57.325 36.000 0.00 0.00 0.00 2.41
109 110 7.862274 TCTCCTAATGATGTGATCCTGTTAT 57.138 36.000 0.00 0.00 0.00 1.89
110 111 7.901029 TCTCCTAATGATGTGATCCTGTTATC 58.099 38.462 0.00 0.00 0.00 1.75
111 112 7.510343 TCTCCTAATGATGTGATCCTGTTATCA 59.490 37.037 0.00 0.00 33.48 2.15
112 113 8.033178 TCCTAATGATGTGATCCTGTTATCAA 57.967 34.615 0.00 0.00 37.61 2.57
113 114 8.663167 TCCTAATGATGTGATCCTGTTATCAAT 58.337 33.333 0.00 0.00 37.61 2.57
114 115 8.727910 CCTAATGATGTGATCCTGTTATCAATG 58.272 37.037 0.00 0.00 37.61 2.82
115 116 9.498176 CTAATGATGTGATCCTGTTATCAATGA 57.502 33.333 0.00 0.00 37.61 2.57
116 117 7.741027 ATGATGTGATCCTGTTATCAATGAC 57.259 36.000 0.00 0.00 37.61 3.06
117 118 6.652053 TGATGTGATCCTGTTATCAATGACA 58.348 36.000 0.00 0.00 37.61 3.58
118 119 7.284820 TGATGTGATCCTGTTATCAATGACAT 58.715 34.615 0.00 0.00 37.61 3.06
119 120 7.443272 TGATGTGATCCTGTTATCAATGACATC 59.557 37.037 0.00 0.00 37.61 3.06
120 121 6.057533 TGTGATCCTGTTATCAATGACATCC 58.942 40.000 0.00 0.00 37.61 3.51
121 122 6.057533 GTGATCCTGTTATCAATGACATCCA 58.942 40.000 0.00 0.00 37.61 3.41
122 123 6.543465 GTGATCCTGTTATCAATGACATCCAA 59.457 38.462 0.00 0.00 37.61 3.53
123 124 7.230108 GTGATCCTGTTATCAATGACATCCAAT 59.770 37.037 0.00 0.00 37.61 3.16
124 125 6.947644 TCCTGTTATCAATGACATCCAATG 57.052 37.500 0.00 0.00 0.00 2.82
135 136 3.008835 ACATCCAATGTCCATGGTCAG 57.991 47.619 16.79 4.75 39.92 3.51
136 137 2.304092 CATCCAATGTCCATGGTCAGG 58.696 52.381 16.79 13.14 39.09 3.86
137 138 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
138 139 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
139 140 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
140 141 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
141 142 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
142 143 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
143 144 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
144 145 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
145 146 1.979308 TCCATGGTCAGGAAACCGTAA 59.021 47.619 12.58 0.00 42.62 3.18
146 147 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
147 148 2.081462 CATGGTCAGGAAACCGTAACC 58.919 52.381 0.00 0.00 42.62 2.85
148 149 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
149 150 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
150 151 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
151 152 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
152 153 3.196254 GGTCAGGAAACCGTAACCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
153 154 4.141779 GGTCAGGAAACCGTAACCATCTAT 60.142 45.833 0.00 0.00 0.00 1.98
154 155 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
155 156 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
156 157 5.188163 TCAGGAAACCGTAACCATCTATTGA 59.812 40.000 0.00 0.00 0.00 2.57
157 158 6.055588 CAGGAAACCGTAACCATCTATTGAT 58.944 40.000 0.00 0.00 0.00 2.57
158 159 6.202954 CAGGAAACCGTAACCATCTATTGATC 59.797 42.308 0.00 0.00 0.00 2.92
159 160 6.053005 GGAAACCGTAACCATCTATTGATCA 58.947 40.000 0.00 0.00 0.00 2.92
160 161 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
161 162 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
162 163 6.235231 ACCGTAACCATCTATTGATCAACT 57.765 37.500 11.07 3.09 0.00 3.16
163 164 7.356089 ACCGTAACCATCTATTGATCAACTA 57.644 36.000 11.07 4.11 0.00 2.24
164 165 7.434492 ACCGTAACCATCTATTGATCAACTAG 58.566 38.462 11.07 13.05 0.00 2.57
165 166 6.366332 CCGTAACCATCTATTGATCAACTAGC 59.634 42.308 11.07 0.10 0.00 3.42
166 167 7.148641 CGTAACCATCTATTGATCAACTAGCT 58.851 38.462 11.07 3.34 0.00 3.32
167 168 8.297426 CGTAACCATCTATTGATCAACTAGCTA 58.703 37.037 11.07 0.00 0.00 3.32
168 169 9.632807 GTAACCATCTATTGATCAACTAGCTAG 57.367 37.037 19.44 19.44 0.00 3.42
169 170 7.847711 ACCATCTATTGATCAACTAGCTAGT 57.152 36.000 20.95 20.95 38.39 2.57
170 171 7.891561 ACCATCTATTGATCAACTAGCTAGTC 58.108 38.462 26.21 14.28 34.99 2.59
171 172 7.507277 ACCATCTATTGATCAACTAGCTAGTCA 59.493 37.037 26.21 16.68 34.99 3.41
172 173 8.363390 CCATCTATTGATCAACTAGCTAGTCAA 58.637 37.037 26.21 23.36 34.99 3.18
173 174 9.190858 CATCTATTGATCAACTAGCTAGTCAAC 57.809 37.037 26.21 17.11 34.99 3.18
174 175 8.526667 TCTATTGATCAACTAGCTAGTCAACT 57.473 34.615 26.21 15.90 34.99 3.16
175 176 9.628500 TCTATTGATCAACTAGCTAGTCAACTA 57.372 33.333 26.21 16.11 34.99 2.24
176 177 9.891828 CTATTGATCAACTAGCTAGTCAACTAG 57.108 37.037 26.21 19.87 46.63 2.57
177 178 7.939784 TTGATCAACTAGCTAGTCAACTAGA 57.060 36.000 26.21 16.35 46.80 2.43
178 179 7.561021 TGATCAACTAGCTAGTCAACTAGAG 57.439 40.000 26.21 11.45 46.80 2.43
179 180 6.544197 TGATCAACTAGCTAGTCAACTAGAGG 59.456 42.308 26.21 8.12 46.80 3.69
180 181 4.641094 TCAACTAGCTAGTCAACTAGAGGC 59.359 45.833 26.21 6.58 46.80 4.70
181 182 4.513406 ACTAGCTAGTCAACTAGAGGCT 57.487 45.455 20.95 12.73 46.80 4.58
182 183 4.457466 ACTAGCTAGTCAACTAGAGGCTC 58.543 47.826 20.95 6.34 46.80 4.70
183 184 3.374042 AGCTAGTCAACTAGAGGCTCA 57.626 47.619 18.26 1.80 46.80 4.26
184 185 3.020984 AGCTAGTCAACTAGAGGCTCAC 58.979 50.000 18.26 4.72 46.80 3.51
185 186 3.020984 GCTAGTCAACTAGAGGCTCACT 58.979 50.000 18.26 12.32 46.80 3.41
186 187 4.080243 AGCTAGTCAACTAGAGGCTCACTA 60.080 45.833 18.26 12.80 46.80 2.74
187 188 4.274950 GCTAGTCAACTAGAGGCTCACTAG 59.725 50.000 23.14 23.14 46.80 2.57
188 189 3.626930 AGTCAACTAGAGGCTCACTAGG 58.373 50.000 18.26 3.24 40.86 3.02
189 190 2.691011 GTCAACTAGAGGCTCACTAGGG 59.309 54.545 18.26 7.64 40.86 3.53
190 191 2.581246 TCAACTAGAGGCTCACTAGGGA 59.419 50.000 18.26 9.66 40.86 4.20
191 192 3.205507 TCAACTAGAGGCTCACTAGGGAT 59.794 47.826 18.26 0.00 40.86 3.85
192 193 4.415846 TCAACTAGAGGCTCACTAGGGATA 59.584 45.833 18.26 0.00 40.86 2.59
193 194 5.075205 TCAACTAGAGGCTCACTAGGGATAT 59.925 44.000 18.26 0.00 40.86 1.63
194 195 4.929479 ACTAGAGGCTCACTAGGGATATG 58.071 47.826 18.26 0.00 40.86 1.78
195 196 3.913370 AGAGGCTCACTAGGGATATGT 57.087 47.619 18.26 0.00 0.00 2.29
196 197 4.206244 AGAGGCTCACTAGGGATATGTT 57.794 45.455 18.26 0.00 0.00 2.71
197 198 3.900601 AGAGGCTCACTAGGGATATGTTG 59.099 47.826 18.26 0.00 0.00 3.33
198 199 3.643792 GAGGCTCACTAGGGATATGTTGT 59.356 47.826 10.25 0.00 0.00 3.32
199 200 3.389329 AGGCTCACTAGGGATATGTTGTG 59.611 47.826 0.00 0.00 0.00 3.33
200 201 3.495100 GGCTCACTAGGGATATGTTGTGG 60.495 52.174 0.00 0.00 0.00 4.17
201 202 3.134804 GCTCACTAGGGATATGTTGTGGT 59.865 47.826 0.00 0.00 0.00 4.16
202 203 4.740934 GCTCACTAGGGATATGTTGTGGTC 60.741 50.000 0.00 0.00 0.00 4.02
203 204 4.620723 TCACTAGGGATATGTTGTGGTCT 58.379 43.478 0.00 0.00 0.00 3.85
204 205 5.773091 TCACTAGGGATATGTTGTGGTCTA 58.227 41.667 0.00 0.00 0.00 2.59
205 206 6.382087 TCACTAGGGATATGTTGTGGTCTAT 58.618 40.000 0.00 0.00 0.00 1.98
206 207 6.267699 TCACTAGGGATATGTTGTGGTCTATG 59.732 42.308 0.00 0.00 0.00 2.23
207 208 6.042093 CACTAGGGATATGTTGTGGTCTATGT 59.958 42.308 0.00 0.00 0.00 2.29
208 209 7.232737 CACTAGGGATATGTTGTGGTCTATGTA 59.767 40.741 0.00 0.00 0.00 2.29
209 210 7.956315 ACTAGGGATATGTTGTGGTCTATGTAT 59.044 37.037 0.00 0.00 0.00 2.29
210 211 7.633018 AGGGATATGTTGTGGTCTATGTATT 57.367 36.000 0.00 0.00 0.00 1.89
211 212 7.680730 AGGGATATGTTGTGGTCTATGTATTC 58.319 38.462 0.00 0.00 0.00 1.75
212 213 7.292356 AGGGATATGTTGTGGTCTATGTATTCA 59.708 37.037 0.00 0.00 0.00 2.57
213 214 7.387948 GGGATATGTTGTGGTCTATGTATTCAC 59.612 40.741 0.00 0.00 0.00 3.18
214 215 7.931407 GGATATGTTGTGGTCTATGTATTCACA 59.069 37.037 0.00 0.00 39.52 3.58
215 216 6.985188 ATGTTGTGGTCTATGTATTCACAC 57.015 37.500 0.00 0.00 37.96 3.82
216 217 5.859495 TGTTGTGGTCTATGTATTCACACA 58.141 37.500 0.00 0.00 37.96 3.72
217 218 6.472016 TGTTGTGGTCTATGTATTCACACAT 58.528 36.000 0.00 0.00 41.88 3.21
218 219 6.371271 TGTTGTGGTCTATGTATTCACACATG 59.629 38.462 0.00 0.00 39.46 3.21
219 220 6.048732 TGTGGTCTATGTATTCACACATGT 57.951 37.500 0.00 0.00 39.46 3.21
220 221 7.176589 TGTGGTCTATGTATTCACACATGTA 57.823 36.000 0.00 0.00 39.46 2.29
221 222 7.791029 TGTGGTCTATGTATTCACACATGTAT 58.209 34.615 0.00 0.00 39.46 2.29
222 223 8.264347 TGTGGTCTATGTATTCACACATGTATT 58.736 33.333 0.00 0.00 39.46 1.89
223 224 9.758651 GTGGTCTATGTATTCACACATGTATTA 57.241 33.333 0.00 0.00 39.46 0.98
224 225 9.758651 TGGTCTATGTATTCACACATGTATTAC 57.241 33.333 0.00 0.00 39.46 1.89
225 226 8.912658 GGTCTATGTATTCACACATGTATTACG 58.087 37.037 0.00 0.00 39.46 3.18
226 227 9.673454 GTCTATGTATTCACACATGTATTACGA 57.327 33.333 0.00 0.00 39.46 3.43
231 232 8.822855 TGTATTCACACATGTATTACGATTTCC 58.177 33.333 0.00 0.00 0.00 3.13
232 233 5.959652 TCACACATGTATTACGATTTCCG 57.040 39.130 0.00 0.00 45.44 4.30
233 234 4.806775 TCACACATGTATTACGATTTCCGG 59.193 41.667 0.00 0.00 43.93 5.14
234 235 4.806775 CACACATGTATTACGATTTCCGGA 59.193 41.667 0.00 0.00 43.93 5.14
235 236 5.465390 CACACATGTATTACGATTTCCGGAT 59.535 40.000 4.15 0.00 43.93 4.18
236 237 6.643360 CACACATGTATTACGATTTCCGGATA 59.357 38.462 4.15 0.00 43.93 2.59
237 238 7.170151 CACACATGTATTACGATTTCCGGATAA 59.830 37.037 4.15 0.00 43.93 1.75
238 239 7.170320 ACACATGTATTACGATTTCCGGATAAC 59.830 37.037 4.15 0.00 43.93 1.89
239 240 7.170151 CACATGTATTACGATTTCCGGATAACA 59.830 37.037 4.15 0.00 43.93 2.41
240 241 7.170320 ACATGTATTACGATTTCCGGATAACAC 59.830 37.037 4.15 0.00 43.93 3.32
241 242 6.571605 TGTATTACGATTTCCGGATAACACA 58.428 36.000 4.15 3.08 43.93 3.72
242 243 7.040494 TGTATTACGATTTCCGGATAACACAA 58.960 34.615 4.15 0.00 43.93 3.33
243 244 7.711772 TGTATTACGATTTCCGGATAACACAAT 59.288 33.333 4.15 0.00 43.93 2.71
244 245 6.988622 TTACGATTTCCGGATAACACAATT 57.011 33.333 4.15 0.00 43.93 2.32
245 246 8.665643 ATTACGATTTCCGGATAACACAATTA 57.334 30.769 4.15 0.00 43.93 1.40
246 247 8.665643 TTACGATTTCCGGATAACACAATTAT 57.334 30.769 4.15 0.00 43.93 1.28
247 248 9.761504 TTACGATTTCCGGATAACACAATTATA 57.238 29.630 4.15 0.00 43.93 0.98
248 249 8.306680 ACGATTTCCGGATAACACAATTATAG 57.693 34.615 4.15 0.00 43.93 1.31
249 250 7.095355 ACGATTTCCGGATAACACAATTATAGC 60.095 37.037 4.15 0.00 43.93 2.97
250 251 7.095397 CGATTTCCGGATAACACAATTATAGCA 60.095 37.037 4.15 0.00 33.91 3.49
251 252 8.635765 ATTTCCGGATAACACAATTATAGCAT 57.364 30.769 4.15 0.00 0.00 3.79
252 253 7.433708 TTCCGGATAACACAATTATAGCATG 57.566 36.000 4.15 0.00 0.00 4.06
253 254 6.764379 TCCGGATAACACAATTATAGCATGA 58.236 36.000 0.00 0.00 0.00 3.07
254 255 7.220740 TCCGGATAACACAATTATAGCATGAA 58.779 34.615 0.00 0.00 0.00 2.57
255 256 7.172532 TCCGGATAACACAATTATAGCATGAAC 59.827 37.037 0.00 0.00 0.00 3.18
256 257 7.041440 CCGGATAACACAATTATAGCATGAACA 60.041 37.037 0.00 0.00 0.00 3.18
257 258 8.341903 CGGATAACACAATTATAGCATGAACAA 58.658 33.333 0.00 0.00 0.00 2.83
263 264 9.394767 ACACAATTATAGCATGAACAATAGACA 57.605 29.630 0.00 0.00 0.00 3.41
270 271 8.913487 ATAGCATGAACAATAGACAATCATCA 57.087 30.769 0.00 0.00 0.00 3.07
271 272 7.818997 AGCATGAACAATAGACAATCATCAT 57.181 32.000 0.00 0.00 0.00 2.45
272 273 7.649057 AGCATGAACAATAGACAATCATCATG 58.351 34.615 0.00 7.79 43.45 3.07
273 274 7.501225 AGCATGAACAATAGACAATCATCATGA 59.499 33.333 14.58 0.00 43.34 3.07
274 275 8.132995 GCATGAACAATAGACAATCATCATGAA 58.867 33.333 14.58 0.00 43.34 2.57
275 276 9.447040 CATGAACAATAGACAATCATCATGAAC 57.553 33.333 0.00 0.00 43.34 3.18
276 277 8.564509 TGAACAATAGACAATCATCATGAACA 57.435 30.769 0.00 0.00 0.00 3.18
277 278 9.012161 TGAACAATAGACAATCATCATGAACAA 57.988 29.630 0.00 0.00 0.00 2.83
278 279 9.499585 GAACAATAGACAATCATCATGAACAAG 57.500 33.333 0.00 0.00 0.00 3.16
279 280 7.993101 ACAATAGACAATCATCATGAACAAGG 58.007 34.615 0.00 0.00 0.00 3.61
280 281 7.830697 ACAATAGACAATCATCATGAACAAGGA 59.169 33.333 0.00 0.00 0.00 3.36
281 282 8.680001 CAATAGACAATCATCATGAACAAGGAA 58.320 33.333 0.00 0.00 0.00 3.36
282 283 8.812513 ATAGACAATCATCATGAACAAGGAAA 57.187 30.769 0.00 0.00 0.00 3.13
283 284 7.713734 AGACAATCATCATGAACAAGGAAAT 57.286 32.000 0.00 0.00 0.00 2.17
284 285 8.812513 AGACAATCATCATGAACAAGGAAATA 57.187 30.769 0.00 0.00 0.00 1.40
285 286 9.417561 AGACAATCATCATGAACAAGGAAATAT 57.582 29.630 0.00 0.00 0.00 1.28
316 317 7.839680 AACCATTTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
330 331 4.137543 CCTCTAGGGCATATTTCAACACC 58.862 47.826 0.00 0.00 0.00 4.16
331 332 3.804036 TCTAGGGCATATTTCAACACCG 58.196 45.455 0.00 0.00 0.00 4.94
332 333 1.762708 AGGGCATATTTCAACACCGG 58.237 50.000 0.00 0.00 0.00 5.28
333 334 0.744281 GGGCATATTTCAACACCGGG 59.256 55.000 6.32 0.00 0.00 5.73
334 335 0.744281 GGCATATTTCAACACCGGGG 59.256 55.000 0.00 0.00 0.00 5.73
335 336 0.744281 GCATATTTCAACACCGGGGG 59.256 55.000 9.50 0.00 0.00 5.40
336 337 1.958069 GCATATTTCAACACCGGGGGT 60.958 52.381 9.50 0.00 35.62 4.95
346 347 4.175337 CCGGGGGTGCATCGACAT 62.175 66.667 0.00 0.00 0.00 3.06
347 348 2.802724 CCGGGGGTGCATCGACATA 61.803 63.158 0.00 0.00 0.00 2.29
348 349 1.371183 CGGGGGTGCATCGACATAT 59.629 57.895 0.00 0.00 0.00 1.78
349 350 0.950555 CGGGGGTGCATCGACATATG 60.951 60.000 0.00 0.00 0.00 1.78
350 351 0.396435 GGGGGTGCATCGACATATGA 59.604 55.000 10.38 0.00 0.00 2.15
351 352 1.003580 GGGGGTGCATCGACATATGAT 59.996 52.381 10.38 0.00 0.00 2.45
352 353 2.079158 GGGGTGCATCGACATATGATG 58.921 52.381 10.38 4.11 44.77 3.07
358 359 2.419667 CATCGACATATGATGCAGGCA 58.580 47.619 10.38 0.00 37.07 4.75
359 360 2.159327 TCGACATATGATGCAGGCAG 57.841 50.000 10.38 0.00 0.00 4.85
360 361 1.413812 TCGACATATGATGCAGGCAGT 59.586 47.619 10.38 0.00 0.00 4.40
361 362 2.627699 TCGACATATGATGCAGGCAGTA 59.372 45.455 10.38 0.00 0.00 2.74
362 363 2.991866 CGACATATGATGCAGGCAGTAG 59.008 50.000 10.38 0.00 0.00 2.57
363 364 3.332919 GACATATGATGCAGGCAGTAGG 58.667 50.000 10.38 0.00 0.00 3.18
364 365 2.974794 ACATATGATGCAGGCAGTAGGA 59.025 45.455 10.38 0.00 0.00 2.94
365 366 3.586174 ACATATGATGCAGGCAGTAGGAT 59.414 43.478 10.38 0.00 0.00 3.24
366 367 2.563261 ATGATGCAGGCAGTAGGATG 57.437 50.000 0.00 0.00 0.00 3.51
367 368 0.471191 TGATGCAGGCAGTAGGATGG 59.529 55.000 0.00 0.00 0.00 3.51
368 369 0.761187 GATGCAGGCAGTAGGATGGA 59.239 55.000 0.00 0.00 0.00 3.41
369 370 1.350351 GATGCAGGCAGTAGGATGGAT 59.650 52.381 0.00 0.00 0.00 3.41
370 371 0.471191 TGCAGGCAGTAGGATGGATG 59.529 55.000 0.00 0.00 0.00 3.51
371 372 0.250640 GCAGGCAGTAGGATGGATGG 60.251 60.000 0.00 0.00 0.00 3.51
372 373 1.135094 CAGGCAGTAGGATGGATGGT 58.865 55.000 0.00 0.00 0.00 3.55
373 374 1.135094 AGGCAGTAGGATGGATGGTG 58.865 55.000 0.00 0.00 0.00 4.17
374 375 0.109342 GGCAGTAGGATGGATGGTGG 59.891 60.000 0.00 0.00 0.00 4.61
375 376 1.131638 GCAGTAGGATGGATGGTGGA 58.868 55.000 0.00 0.00 0.00 4.02
376 377 1.071385 GCAGTAGGATGGATGGTGGAG 59.929 57.143 0.00 0.00 0.00 3.86
377 378 1.696336 CAGTAGGATGGATGGTGGAGG 59.304 57.143 0.00 0.00 0.00 4.30
378 379 1.580658 AGTAGGATGGATGGTGGAGGA 59.419 52.381 0.00 0.00 0.00 3.71
379 380 1.974236 GTAGGATGGATGGTGGAGGAG 59.026 57.143 0.00 0.00 0.00 3.69
380 381 1.059006 AGGATGGATGGTGGAGGAGC 61.059 60.000 0.00 0.00 0.00 4.70
381 382 1.348008 GGATGGATGGTGGAGGAGCA 61.348 60.000 0.00 0.00 36.23 4.26
382 383 0.769873 GATGGATGGTGGAGGAGCAT 59.230 55.000 0.00 0.00 45.73 3.79
383 384 0.477204 ATGGATGGTGGAGGAGCATG 59.523 55.000 0.00 0.00 43.03 4.06
384 385 0.915872 TGGATGGTGGAGGAGCATGT 60.916 55.000 0.00 0.00 43.03 3.21
385 386 0.179034 GGATGGTGGAGGAGCATGTC 60.179 60.000 0.00 0.00 43.03 3.06
386 387 0.531532 GATGGTGGAGGAGCATGTCG 60.532 60.000 0.00 0.00 43.03 4.35
387 388 1.267574 ATGGTGGAGGAGCATGTCGT 61.268 55.000 0.00 0.00 41.38 4.34
388 389 1.448540 GGTGGAGGAGCATGTCGTG 60.449 63.158 0.00 0.00 0.00 4.35
389 390 1.448540 GTGGAGGAGCATGTCGTGG 60.449 63.158 0.00 0.00 0.00 4.94
390 391 2.512515 GGAGGAGCATGTCGTGGC 60.513 66.667 0.00 0.00 0.00 5.01
391 392 2.265739 GAGGAGCATGTCGTGGCA 59.734 61.111 0.00 0.00 0.00 4.92
392 393 1.153289 GAGGAGCATGTCGTGGCAT 60.153 57.895 0.00 0.00 0.00 4.40
393 394 1.153289 AGGAGCATGTCGTGGCATC 60.153 57.895 0.00 0.00 0.00 3.91
394 395 2.528743 GGAGCATGTCGTGGCATCG 61.529 63.158 0.00 0.00 0.00 3.84
395 396 1.811266 GAGCATGTCGTGGCATCGT 60.811 57.895 8.80 0.00 0.00 3.73
396 397 0.527600 GAGCATGTCGTGGCATCGTA 60.528 55.000 8.80 2.06 0.00 3.43
397 398 0.528466 AGCATGTCGTGGCATCGTAG 60.528 55.000 8.80 1.33 0.00 3.51
398 399 0.806102 GCATGTCGTGGCATCGTAGT 60.806 55.000 8.80 0.00 0.00 2.73
399 400 1.200483 CATGTCGTGGCATCGTAGTC 58.800 55.000 8.80 1.80 0.00 2.59
400 401 1.103803 ATGTCGTGGCATCGTAGTCT 58.896 50.000 8.80 0.00 0.00 3.24
401 402 0.170339 TGTCGTGGCATCGTAGTCTG 59.830 55.000 8.80 0.00 0.00 3.51
402 403 0.450583 GTCGTGGCATCGTAGTCTGA 59.549 55.000 8.80 0.00 0.00 3.27
403 404 1.065701 GTCGTGGCATCGTAGTCTGAT 59.934 52.381 8.80 0.00 0.00 2.90
404 405 1.333931 TCGTGGCATCGTAGTCTGATC 59.666 52.381 8.80 0.00 0.00 2.92
405 406 1.759994 GTGGCATCGTAGTCTGATCG 58.240 55.000 0.00 0.00 0.00 3.69
406 407 0.668535 TGGCATCGTAGTCTGATCGG 59.331 55.000 0.00 0.00 0.00 4.18
407 408 0.669077 GGCATCGTAGTCTGATCGGT 59.331 55.000 0.42 0.00 0.00 4.69
408 409 1.600663 GGCATCGTAGTCTGATCGGTG 60.601 57.143 0.42 8.11 38.49 4.94
409 410 1.065701 GCATCGTAGTCTGATCGGTGT 59.934 52.381 0.42 0.00 37.88 4.16
410 411 2.720933 CATCGTAGTCTGATCGGTGTG 58.279 52.381 0.42 0.00 32.13 3.82
411 412 1.092348 TCGTAGTCTGATCGGTGTGG 58.908 55.000 0.42 0.00 0.00 4.17
412 413 0.809385 CGTAGTCTGATCGGTGTGGT 59.191 55.000 0.42 0.00 0.00 4.16
413 414 1.202154 CGTAGTCTGATCGGTGTGGTC 60.202 57.143 0.42 0.00 0.00 4.02
414 415 2.093106 GTAGTCTGATCGGTGTGGTCT 58.907 52.381 0.42 0.00 0.00 3.85
415 416 1.633774 AGTCTGATCGGTGTGGTCTT 58.366 50.000 0.42 0.00 0.00 3.01
416 417 1.273606 AGTCTGATCGGTGTGGTCTTG 59.726 52.381 0.42 0.00 0.00 3.02
417 418 1.000955 GTCTGATCGGTGTGGTCTTGT 59.999 52.381 0.42 0.00 0.00 3.16
418 419 1.000843 TCTGATCGGTGTGGTCTTGTG 59.999 52.381 0.42 0.00 0.00 3.33
419 420 0.602638 TGATCGGTGTGGTCTTGTGC 60.603 55.000 0.00 0.00 0.00 4.57
420 421 0.602638 GATCGGTGTGGTCTTGTGCA 60.603 55.000 0.00 0.00 0.00 4.57
421 422 0.036732 ATCGGTGTGGTCTTGTGCAT 59.963 50.000 0.00 0.00 0.00 3.96
422 423 0.884259 TCGGTGTGGTCTTGTGCATG 60.884 55.000 0.00 0.00 0.00 4.06
423 424 0.884259 CGGTGTGGTCTTGTGCATGA 60.884 55.000 0.00 0.00 0.00 3.07
424 425 0.593128 GGTGTGGTCTTGTGCATGAC 59.407 55.000 0.00 9.00 35.48 3.06
425 426 1.308047 GTGTGGTCTTGTGCATGACA 58.692 50.000 16.45 0.00 37.26 3.58
426 427 1.265095 GTGTGGTCTTGTGCATGACAG 59.735 52.381 16.45 0.30 37.26 3.51
427 428 1.140652 TGTGGTCTTGTGCATGACAGA 59.859 47.619 16.45 2.40 37.26 3.41
428 429 2.221169 GTGGTCTTGTGCATGACAGAA 58.779 47.619 16.45 0.00 37.26 3.02
429 430 2.618241 GTGGTCTTGTGCATGACAGAAA 59.382 45.455 16.45 0.00 37.26 2.52
430 431 2.618241 TGGTCTTGTGCATGACAGAAAC 59.382 45.455 16.45 1.47 37.26 2.78
431 432 2.618241 GGTCTTGTGCATGACAGAAACA 59.382 45.455 16.45 0.00 37.26 2.83
432 433 3.254166 GGTCTTGTGCATGACAGAAACAT 59.746 43.478 16.45 0.00 37.26 2.71
433 434 4.224433 GTCTTGTGCATGACAGAAACATG 58.776 43.478 11.69 0.00 45.19 3.21
441 442 3.646611 TGACAGAAACATGCATTGTGG 57.353 42.857 5.71 0.00 38.99 4.17
442 443 2.288334 TGACAGAAACATGCATTGTGGC 60.288 45.455 5.71 9.88 38.99 5.01
443 444 1.001181 ACAGAAACATGCATTGTGGCC 59.999 47.619 0.00 0.00 38.99 5.36
444 445 0.244450 AGAAACATGCATTGTGGCCG 59.756 50.000 0.00 0.00 38.99 6.13
445 446 0.243365 GAAACATGCATTGTGGCCGA 59.757 50.000 0.00 0.00 38.99 5.54
446 447 0.678395 AAACATGCATTGTGGCCGAA 59.322 45.000 0.00 0.00 38.99 4.30
447 448 0.896923 AACATGCATTGTGGCCGAAT 59.103 45.000 0.00 0.00 38.99 3.34
448 449 0.457035 ACATGCATTGTGGCCGAATC 59.543 50.000 0.00 0.00 37.11 2.52
449 450 0.593008 CATGCATTGTGGCCGAATCG 60.593 55.000 0.00 0.00 0.00 3.34
474 475 1.856629 AATCCATGCACCAGAAAGGG 58.143 50.000 0.00 0.00 43.89 3.95
479 480 1.434513 ATGCACCAGAAAGGGTCCCA 61.435 55.000 11.55 0.00 43.89 4.37
480 481 1.152830 GCACCAGAAAGGGTCCCAA 59.847 57.895 11.55 0.00 43.89 4.12
485 486 1.609208 CAGAAAGGGTCCCAACACTG 58.391 55.000 11.55 9.97 38.55 3.66
507 508 0.036388 GAGCACGATGACCCTTGGAA 60.036 55.000 0.00 0.00 0.00 3.53
550 551 3.818787 GCCATGCCGGTGAAGCTG 61.819 66.667 1.90 0.00 36.97 4.24
574 575 3.186047 CGATGGACGCGGAACCAC 61.186 66.667 20.34 14.21 39.06 4.16
575 576 2.047655 GATGGACGCGGAACCACA 60.048 61.111 20.34 6.60 39.06 4.17
577 578 2.501223 GATGGACGCGGAACCACAGA 62.501 60.000 20.34 2.61 39.06 3.41
585 586 1.308069 CGGAACCACAGAAGGGCATG 61.308 60.000 0.00 0.00 0.00 4.06
594 595 3.764160 GAAGGGCATGAGAGGCGGG 62.764 68.421 0.00 0.00 34.40 6.13
597 598 3.797353 GGCATGAGAGGCGGGGAA 61.797 66.667 0.00 0.00 0.00 3.97
601 602 1.613630 ATGAGAGGCGGGGAACAGT 60.614 57.895 0.00 0.00 0.00 3.55
602 603 1.903877 ATGAGAGGCGGGGAACAGTG 61.904 60.000 0.00 0.00 0.00 3.66
621 622 1.674322 CCCCGTTACAAGGTGCCAG 60.674 63.158 0.00 0.00 0.00 4.85
641 642 3.640498 CAGCCATCCAGAAGATCACTAGA 59.360 47.826 0.00 0.00 30.59 2.43
673 674 0.465460 ACCGCACACAGGAACAACAT 60.465 50.000 0.00 0.00 0.00 2.71
703 705 2.665185 GAACGAAGCCACCACGCT 60.665 61.111 0.00 0.00 42.22 5.07
721 723 1.215423 GCTAATCACCCCAACCTGGAT 59.785 52.381 0.00 0.00 40.96 3.41
723 725 1.084018 AATCACCCCAACCTGGATGT 58.916 50.000 0.00 0.00 40.96 3.06
751 753 2.503158 CGTCGTCCGATGCAACGA 60.503 61.111 18.77 12.73 44.91 3.85
865 867 0.106318 GCATCCAGCTCCCCTTGAAT 60.106 55.000 0.00 0.00 41.15 2.57
872 874 0.181350 GCTCCCCTTGAATCGGATGT 59.819 55.000 0.00 0.00 0.00 3.06
880 882 2.168458 TGAATCGGATGTAGGGGACA 57.832 50.000 0.00 0.00 43.97 4.02
881 883 2.473070 TGAATCGGATGTAGGGGACAA 58.527 47.619 0.00 0.00 42.78 3.18
892 894 1.376812 GGGGACAAGCGTTGGTAGG 60.377 63.158 3.42 0.00 34.12 3.18
948 950 2.885113 CAGGCACGATCCAGACGA 59.115 61.111 0.00 0.00 34.70 4.20
994 996 1.905354 GAGGCCAAGGCAGTTGCTT 60.905 57.895 13.87 0.00 44.11 3.91
1053 1055 1.747355 GCTGTCAAAGATCCCACCATG 59.253 52.381 0.00 0.00 0.00 3.66
1103 1106 1.697432 ACTCGTGGATTCCAAGGACAA 59.303 47.619 17.09 0.00 34.18 3.18
1104 1107 2.305927 ACTCGTGGATTCCAAGGACAAT 59.694 45.455 17.09 0.00 34.18 2.71
1123 1126 2.501128 CACCGGATCCGAGCATGT 59.499 61.111 35.42 20.65 42.83 3.21
1127 1130 2.528743 CGGATCCGAGCATGTGCAC 61.529 63.158 30.62 10.75 45.16 4.57
1170 1174 0.249405 CACAACAAGCAATGGCCGTT 60.249 50.000 3.71 3.71 42.56 4.44
1171 1175 0.031994 ACAACAAGCAATGGCCGTTC 59.968 50.000 7.40 3.12 42.56 3.95
1177 1181 2.440247 CAATGGCCGTTCCCCCTC 60.440 66.667 7.40 0.00 0.00 4.30
1191 1195 2.895865 CCTCGCGGCGACTCTAGA 60.896 66.667 22.69 0.00 0.00 2.43
1222 1226 2.193248 GGCCCTCCACCATACAGC 59.807 66.667 0.00 0.00 0.00 4.40
1250 1254 2.264480 CGGTGGGCAAGACATCGA 59.736 61.111 0.00 0.00 44.77 3.59
1298 1302 3.411517 CTGGGGGAAGGGTCGCAT 61.412 66.667 0.00 0.00 38.45 4.73
1302 1306 2.808206 GGGGAAGGGTCGCATCGAT 61.808 63.158 0.00 0.00 38.42 3.59
1303 1307 1.595382 GGGAAGGGTCGCATCGATG 60.595 63.158 21.27 21.27 38.42 3.84
1304 1308 1.144057 GGAAGGGTCGCATCGATGT 59.856 57.895 25.47 4.67 38.42 3.06
1327 1331 1.446099 CACCACCGTGGATGTCGAG 60.446 63.158 24.80 1.32 40.96 4.04
1347 1351 2.736826 GGGGTCACTGGAGCTAGGC 61.737 68.421 0.00 0.00 41.29 3.93
1374 1378 0.035881 CACACCCAGCACAGACAGAT 59.964 55.000 0.00 0.00 0.00 2.90
1512 1535 1.632018 CCAGGATCCGGCAAAGGGTA 61.632 60.000 5.98 0.00 0.00 3.69
1513 1536 0.179045 CAGGATCCGGCAAAGGGTAG 60.179 60.000 5.98 0.00 0.00 3.18
1516 1539 1.077716 ATCCGGCAAAGGGTAGTGC 60.078 57.895 0.00 0.00 40.14 4.40
1544 1567 1.760086 CGGAGCAGGGAGATGGAGT 60.760 63.158 0.00 0.00 0.00 3.85
1546 1569 0.980231 GGAGCAGGGAGATGGAGTGT 60.980 60.000 0.00 0.00 0.00 3.55
1654 1678 5.835113 TGATGAGTGATACATGACGAAGA 57.165 39.130 0.00 0.00 0.00 2.87
1800 1825 1.941975 CGCCTGATCAATGTACATGCA 59.058 47.619 9.63 5.11 0.00 3.96
1829 1854 3.689649 ACCATTTGCTCTGATTTACCGAC 59.310 43.478 0.00 0.00 0.00 4.79
1867 1892 4.471747 TGCATTATGTAACCCAGACTGGTA 59.528 41.667 20.24 4.25 37.76 3.25
1873 1898 5.313280 TGTAACCCAGACTGGTAATGTTT 57.687 39.130 20.24 5.97 37.76 2.83
1878 1903 4.959839 ACCCAGACTGGTAATGTTTGTTTT 59.040 37.500 20.24 0.00 36.67 2.43
1883 1908 5.587043 AGACTGGTAATGTTTGTTTTGTCGA 59.413 36.000 0.00 0.00 0.00 4.20
2000 2025 6.012337 TGAGGGATGGCATAAATGAAACTA 57.988 37.500 0.00 0.00 0.00 2.24
2098 2228 2.093973 GGGTGTCGATGACTTGAGTGAT 60.094 50.000 0.00 0.00 33.15 3.06
2110 2240 4.267536 ACTTGAGTGATGAATGGTCATGG 58.732 43.478 0.00 0.00 44.83 3.66
2111 2241 4.263639 ACTTGAGTGATGAATGGTCATGGT 60.264 41.667 0.00 0.00 44.83 3.55
2113 2243 2.868583 GAGTGATGAATGGTCATGGTCG 59.131 50.000 0.00 0.00 44.83 4.79
2114 2244 2.237143 AGTGATGAATGGTCATGGTCGT 59.763 45.455 0.00 0.00 44.83 4.34
2123 2261 1.234821 GTCATGGTCGTGCTTTTGGA 58.765 50.000 0.00 0.00 0.00 3.53
2131 2269 3.391049 GTCGTGCTTTTGGAGTAAGAGT 58.609 45.455 0.00 0.00 30.14 3.24
2142 2280 3.072476 TGGAGTAAGAGTTGAACAAGGGG 59.928 47.826 0.00 0.00 0.00 4.79
2154 2292 1.042559 ACAAGGGGGTGTGCAGTTTG 61.043 55.000 0.00 0.00 0.00 2.93
2170 2308 5.238432 TGCAGTTTGAATGTAAATGACGAGT 59.762 36.000 0.00 0.00 0.00 4.18
2193 2331 2.711009 TGGAGAGACCAAGGTCATTTGT 59.289 45.455 20.52 0.00 46.75 2.83
2199 2337 7.281100 GGAGAGACCAAGGTCATTTGTAATTAG 59.719 40.741 20.52 0.00 46.76 1.73
2208 2346 5.883673 GGTCATTTGTAATTAGGTGTGGCTA 59.116 40.000 0.00 0.00 0.00 3.93
2222 2360 3.503748 GTGTGGCTAATGCAAGAAGACTT 59.496 43.478 0.00 0.00 41.91 3.01
2232 2370 2.411904 CAAGAAGACTTGCGAGCTCTT 58.588 47.619 12.85 14.83 45.19 2.85
2266 2404 0.457851 CGTTGGAGGAGAGGCTACAG 59.542 60.000 0.00 0.00 0.00 2.74
2288 2426 2.063378 GGGAGAGAGGGACCAGCAG 61.063 68.421 0.00 0.00 0.00 4.24
2352 2680 3.732849 GGTGGCTTAGGCTGGGCT 61.733 66.667 7.43 1.68 38.73 5.19
2362 2690 2.203480 GCTGGGCTTGTTGGGTGA 60.203 61.111 0.00 0.00 0.00 4.02
2365 2693 2.112297 GGGCTTGTTGGGTGACGA 59.888 61.111 0.00 0.00 0.00 4.20
2412 2740 2.136878 CGACCCTGGAGGCAGCTAT 61.137 63.158 0.00 0.00 40.58 2.97
2423 2751 1.405821 AGGCAGCTATGTCTCGTACAC 59.594 52.381 0.00 0.00 36.32 2.90
2425 2753 2.455032 GCAGCTATGTCTCGTACACAG 58.545 52.381 0.00 0.00 42.09 3.66
2431 2759 4.735822 GCTATGTCTCGTACACAGTCAATC 59.264 45.833 0.00 0.00 42.09 2.67
2436 2764 4.386049 GTCTCGTACACAGTCAATCTTTGG 59.614 45.833 0.00 0.00 0.00 3.28
2461 2789 7.425606 GTGGATATGTTGTTCATGTATTTCCC 58.574 38.462 0.00 0.00 37.91 3.97
2472 2800 7.119553 TGTTCATGTATTTCCCGGTTTACTAAC 59.880 37.037 0.00 4.45 0.00 2.34
2473 2801 6.709281 TCATGTATTTCCCGGTTTACTAACA 58.291 36.000 0.00 0.00 35.92 2.41
2474 2802 7.340256 TCATGTATTTCCCGGTTTACTAACAT 58.660 34.615 0.00 0.00 35.92 2.71
2475 2803 6.988622 TGTATTTCCCGGTTTACTAACATG 57.011 37.500 0.00 0.00 35.92 3.21
2476 2804 4.976224 ATTTCCCGGTTTACTAACATGC 57.024 40.909 0.00 0.00 35.92 4.06
2477 2805 3.420300 TTCCCGGTTTACTAACATGCA 57.580 42.857 0.00 0.00 35.92 3.96
2478 2806 3.420300 TCCCGGTTTACTAACATGCAA 57.580 42.857 0.00 0.00 35.92 4.08
2516 2844 4.424711 GGCACCGGGGCAATCTCA 62.425 66.667 33.37 0.00 42.77 3.27
2517 2845 2.124151 GCACCGGGGCAATCTCAT 60.124 61.111 27.59 0.00 0.00 2.90
2519 2847 1.825191 CACCGGGGCAATCTCATGG 60.825 63.158 6.32 0.00 0.00 3.66
2548 2876 1.658686 ATCTCACTCCCGTGCGACTC 61.659 60.000 0.00 0.00 37.66 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.709600 GCTAAAGCTTTTCTTATGTCAAGTATC 57.290 33.333 18.47 0.00 38.21 2.24
2 3 9.231297 TGCTAAAGCTTTTCTTATGTCAAGTAT 57.769 29.630 18.47 0.00 42.66 2.12
3 4 8.615878 TGCTAAAGCTTTTCTTATGTCAAGTA 57.384 30.769 18.47 0.96 42.66 2.24
4 5 7.445402 TCTGCTAAAGCTTTTCTTATGTCAAGT 59.555 33.333 18.47 0.00 42.66 3.16
5 6 7.748241 GTCTGCTAAAGCTTTTCTTATGTCAAG 59.252 37.037 18.47 5.49 42.66 3.02
6 7 7.571244 CGTCTGCTAAAGCTTTTCTTATGTCAA 60.571 37.037 18.47 0.00 42.66 3.18
7 8 6.128553 CGTCTGCTAAAGCTTTTCTTATGTCA 60.129 38.462 18.47 3.64 42.66 3.58
8 9 6.090898 TCGTCTGCTAAAGCTTTTCTTATGTC 59.909 38.462 18.47 1.59 42.66 3.06
9 10 5.932303 TCGTCTGCTAAAGCTTTTCTTATGT 59.068 36.000 18.47 0.00 42.66 2.29
10 11 6.408858 TCGTCTGCTAAAGCTTTTCTTATG 57.591 37.500 18.47 5.69 42.66 1.90
11 12 6.651225 AGTTCGTCTGCTAAAGCTTTTCTTAT 59.349 34.615 18.47 0.00 42.66 1.73
12 13 5.989777 AGTTCGTCTGCTAAAGCTTTTCTTA 59.010 36.000 18.47 0.00 42.66 2.10
13 14 4.816925 AGTTCGTCTGCTAAAGCTTTTCTT 59.183 37.500 18.47 0.00 42.66 2.52
14 15 4.381411 AGTTCGTCTGCTAAAGCTTTTCT 58.619 39.130 18.47 0.00 42.66 2.52
15 16 4.733972 AGTTCGTCTGCTAAAGCTTTTC 57.266 40.909 18.47 10.34 42.66 2.29
16 17 5.050295 GTGTAGTTCGTCTGCTAAAGCTTTT 60.050 40.000 18.47 1.58 42.66 2.27
17 18 4.448060 GTGTAGTTCGTCTGCTAAAGCTTT 59.552 41.667 17.30 17.30 42.66 3.51
18 19 3.988517 GTGTAGTTCGTCTGCTAAAGCTT 59.011 43.478 3.26 0.00 42.66 3.74
19 20 3.576648 GTGTAGTTCGTCTGCTAAAGCT 58.423 45.455 3.26 0.00 42.66 3.74
20 21 2.341760 CGTGTAGTTCGTCTGCTAAAGC 59.658 50.000 0.00 0.00 42.50 3.51
21 22 3.818387 TCGTGTAGTTCGTCTGCTAAAG 58.182 45.455 0.00 0.00 0.00 1.85
22 23 3.902261 TCGTGTAGTTCGTCTGCTAAA 57.098 42.857 0.00 0.00 0.00 1.85
23 24 3.688185 AGATCGTGTAGTTCGTCTGCTAA 59.312 43.478 0.00 0.00 0.00 3.09
24 25 3.268330 AGATCGTGTAGTTCGTCTGCTA 58.732 45.455 0.00 0.00 0.00 3.49
25 26 2.085320 AGATCGTGTAGTTCGTCTGCT 58.915 47.619 0.00 0.00 0.00 4.24
26 27 2.546195 AGATCGTGTAGTTCGTCTGC 57.454 50.000 0.00 0.00 0.00 4.26
27 28 4.079665 TCAAGATCGTGTAGTTCGTCTG 57.920 45.455 8.54 0.00 0.00 3.51
28 29 3.426426 GCTCAAGATCGTGTAGTTCGTCT 60.426 47.826 8.54 0.00 0.00 4.18
29 30 2.847133 GCTCAAGATCGTGTAGTTCGTC 59.153 50.000 8.54 0.00 0.00 4.20
30 31 2.488545 AGCTCAAGATCGTGTAGTTCGT 59.511 45.455 8.54 0.00 0.00 3.85
31 32 3.138205 AGCTCAAGATCGTGTAGTTCG 57.862 47.619 8.54 0.00 0.00 3.95
32 33 4.442733 GCATAGCTCAAGATCGTGTAGTTC 59.557 45.833 8.54 0.00 0.00 3.01
33 34 4.098654 AGCATAGCTCAAGATCGTGTAGTT 59.901 41.667 8.54 5.81 30.62 2.24
34 35 3.634448 AGCATAGCTCAAGATCGTGTAGT 59.366 43.478 8.54 0.00 30.62 2.73
35 36 4.235939 AGCATAGCTCAAGATCGTGTAG 57.764 45.455 8.54 6.21 30.62 2.74
36 37 4.655762 AAGCATAGCTCAAGATCGTGTA 57.344 40.909 8.54 0.00 38.25 2.90
37 38 3.533606 AAGCATAGCTCAAGATCGTGT 57.466 42.857 8.54 0.00 38.25 4.49
38 39 3.986572 CCTAAGCATAGCTCAAGATCGTG 59.013 47.826 1.76 1.76 38.25 4.35
39 40 3.891977 TCCTAAGCATAGCTCAAGATCGT 59.108 43.478 0.00 0.00 38.25 3.73
40 41 4.511617 TCCTAAGCATAGCTCAAGATCG 57.488 45.455 0.00 0.00 38.25 3.69
41 42 5.642919 CCAATCCTAAGCATAGCTCAAGATC 59.357 44.000 0.00 0.00 38.25 2.75
42 43 5.514484 CCCAATCCTAAGCATAGCTCAAGAT 60.514 44.000 0.00 0.00 38.25 2.40
43 44 4.202398 CCCAATCCTAAGCATAGCTCAAGA 60.202 45.833 0.00 0.00 38.25 3.02
44 45 4.070716 CCCAATCCTAAGCATAGCTCAAG 58.929 47.826 0.00 0.00 38.25 3.02
45 46 3.459598 ACCCAATCCTAAGCATAGCTCAA 59.540 43.478 0.00 0.00 38.25 3.02
46 47 3.048600 ACCCAATCCTAAGCATAGCTCA 58.951 45.455 0.00 0.00 38.25 4.26
47 48 3.326297 AGACCCAATCCTAAGCATAGCTC 59.674 47.826 0.00 0.00 38.25 4.09
48 49 3.321950 AGACCCAATCCTAAGCATAGCT 58.678 45.455 0.00 0.00 42.56 3.32
49 50 3.778954 AGACCCAATCCTAAGCATAGC 57.221 47.619 0.00 0.00 0.00 2.97
50 51 5.041191 ACAAGACCCAATCCTAAGCATAG 57.959 43.478 0.00 0.00 0.00 2.23
51 52 4.141482 GGACAAGACCCAATCCTAAGCATA 60.141 45.833 0.00 0.00 0.00 3.14
52 53 3.372025 GGACAAGACCCAATCCTAAGCAT 60.372 47.826 0.00 0.00 0.00 3.79
53 54 2.026262 GGACAAGACCCAATCCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
54 55 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
55 56 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
56 57 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
57 58 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
58 59 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
59 60 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
60 61 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
61 62 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
62 63 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
63 64 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
64 65 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
65 66 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
66 67 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
67 68 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
68 69 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
69 70 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
70 71 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
71 72 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
72 73 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
80 81 7.017353 ACAGGATCACATCATTAGGAGAATGAT 59.983 37.037 6.90 6.90 45.40 2.45
81 82 6.328410 ACAGGATCACATCATTAGGAGAATGA 59.672 38.462 2.66 2.66 40.50 2.57
82 83 6.531923 ACAGGATCACATCATTAGGAGAATG 58.468 40.000 0.00 0.00 0.00 2.67
83 84 6.760440 ACAGGATCACATCATTAGGAGAAT 57.240 37.500 0.00 0.00 0.00 2.40
84 85 6.566079 AACAGGATCACATCATTAGGAGAA 57.434 37.500 0.00 0.00 0.00 2.87
85 86 7.510343 TGATAACAGGATCACATCATTAGGAGA 59.490 37.037 0.00 0.00 30.75 3.71
86 87 7.674120 TGATAACAGGATCACATCATTAGGAG 58.326 38.462 0.00 0.00 30.75 3.69
87 88 7.616528 TGATAACAGGATCACATCATTAGGA 57.383 36.000 0.00 0.00 30.75 2.94
88 89 8.727910 CATTGATAACAGGATCACATCATTAGG 58.272 37.037 0.00 0.00 35.56 2.69
89 90 9.498176 TCATTGATAACAGGATCACATCATTAG 57.502 33.333 0.00 0.00 35.56 1.73
90 91 9.276590 GTCATTGATAACAGGATCACATCATTA 57.723 33.333 0.00 0.00 35.56 1.90
91 92 7.776500 TGTCATTGATAACAGGATCACATCATT 59.224 33.333 0.00 0.00 35.56 2.57
92 93 7.284820 TGTCATTGATAACAGGATCACATCAT 58.715 34.615 0.00 0.00 35.56 2.45
93 94 6.652053 TGTCATTGATAACAGGATCACATCA 58.348 36.000 0.00 0.00 35.56 3.07
94 95 7.094890 GGATGTCATTGATAACAGGATCACATC 60.095 40.741 0.00 0.48 36.17 3.06
95 96 6.713903 GGATGTCATTGATAACAGGATCACAT 59.286 38.462 0.00 0.00 35.56 3.21
96 97 6.057533 GGATGTCATTGATAACAGGATCACA 58.942 40.000 0.00 0.00 35.56 3.58
97 98 6.057533 TGGATGTCATTGATAACAGGATCAC 58.942 40.000 0.00 0.00 35.56 3.06
98 99 6.251255 TGGATGTCATTGATAACAGGATCA 57.749 37.500 0.00 0.00 33.96 2.92
99 100 7.230108 ACATTGGATGTCATTGATAACAGGATC 59.770 37.037 0.00 0.00 39.92 3.36
100 101 7.064866 ACATTGGATGTCATTGATAACAGGAT 58.935 34.615 0.00 0.00 39.92 3.24
101 102 6.425735 ACATTGGATGTCATTGATAACAGGA 58.574 36.000 0.00 0.00 39.92 3.86
102 103 6.704289 ACATTGGATGTCATTGATAACAGG 57.296 37.500 0.00 0.00 39.92 4.00
116 117 2.092267 TCCTGACCATGGACATTGGATG 60.092 50.000 21.47 5.31 0.00 3.51
117 118 2.207988 TCCTGACCATGGACATTGGAT 58.792 47.619 21.47 0.00 0.00 3.41
118 119 1.667595 TCCTGACCATGGACATTGGA 58.332 50.000 21.47 18.93 0.00 3.53
119 120 2.493278 GTTTCCTGACCATGGACATTGG 59.507 50.000 21.47 16.85 32.65 3.16
120 121 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
121 122 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
122 123 1.340017 CGGTTTCCTGACCATGGACAT 60.340 52.381 21.47 0.00 39.78 3.06
123 124 0.036164 CGGTTTCCTGACCATGGACA 59.964 55.000 21.47 18.47 39.78 4.02
124 125 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
125 126 1.646912 TACGGTTTCCTGACCATGGA 58.353 50.000 21.47 0.00 39.78 3.41
126 127 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
127 128 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
128 129 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
129 130 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
130 131 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
131 132 3.329929 AGATGGTTACGGTTTCCTGAC 57.670 47.619 0.00 0.00 0.00 3.51
132 133 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
133 134 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
134 135 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
135 136 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
136 137 7.280205 AGTTGATCAATAGATGGTTACGGTTTC 59.720 37.037 12.12 0.00 33.72 2.78
137 138 7.110155 AGTTGATCAATAGATGGTTACGGTTT 58.890 34.615 12.12 0.00 33.72 3.27
138 139 6.650120 AGTTGATCAATAGATGGTTACGGTT 58.350 36.000 12.12 0.00 33.72 4.44
139 140 6.235231 AGTTGATCAATAGATGGTTACGGT 57.765 37.500 12.12 0.00 33.72 4.83
140 141 6.366332 GCTAGTTGATCAATAGATGGTTACGG 59.634 42.308 12.12 0.00 33.72 4.02
141 142 7.148641 AGCTAGTTGATCAATAGATGGTTACG 58.851 38.462 12.12 0.00 33.72 3.18
142 143 9.632807 CTAGCTAGTTGATCAATAGATGGTTAC 57.367 37.037 12.12 0.00 33.72 2.50
143 144 9.368416 ACTAGCTAGTTGATCAATAGATGGTTA 57.632 33.333 20.95 2.84 30.73 2.85
144 145 8.256356 ACTAGCTAGTTGATCAATAGATGGTT 57.744 34.615 20.95 1.85 30.73 3.67
145 146 7.507277 TGACTAGCTAGTTGATCAATAGATGGT 59.493 37.037 26.71 20.79 36.50 3.55
146 147 7.890515 TGACTAGCTAGTTGATCAATAGATGG 58.109 38.462 26.71 15.36 36.50 3.51
147 148 9.190858 GTTGACTAGCTAGTTGATCAATAGATG 57.809 37.037 26.71 9.84 36.50 2.90
148 149 9.142014 AGTTGACTAGCTAGTTGATCAATAGAT 57.858 33.333 26.71 14.17 36.50 1.98
149 150 8.526667 AGTTGACTAGCTAGTTGATCAATAGA 57.473 34.615 26.71 3.46 36.50 1.98
150 151 9.891828 CTAGTTGACTAGCTAGTTGATCAATAG 57.108 37.037 26.71 20.08 39.43 1.73
151 152 9.628500 TCTAGTTGACTAGCTAGTTGATCAATA 57.372 33.333 26.71 16.36 44.24 1.90
152 153 8.526667 TCTAGTTGACTAGCTAGTTGATCAAT 57.473 34.615 26.71 16.17 44.24 2.57
153 154 7.067615 CCTCTAGTTGACTAGCTAGTTGATCAA 59.932 40.741 26.71 21.37 44.24 2.57
154 155 6.544197 CCTCTAGTTGACTAGCTAGTTGATCA 59.456 42.308 26.71 17.01 44.24 2.92
155 156 6.514376 GCCTCTAGTTGACTAGCTAGTTGATC 60.514 46.154 26.71 14.64 44.24 2.92
156 157 5.300792 GCCTCTAGTTGACTAGCTAGTTGAT 59.699 44.000 26.71 15.39 44.24 2.57
157 158 4.641094 GCCTCTAGTTGACTAGCTAGTTGA 59.359 45.833 26.71 15.60 44.24 3.18
158 159 4.642885 AGCCTCTAGTTGACTAGCTAGTTG 59.357 45.833 26.71 12.91 44.24 3.16
159 160 4.862371 AGCCTCTAGTTGACTAGCTAGTT 58.138 43.478 26.71 13.81 44.24 2.24
160 161 4.080243 TGAGCCTCTAGTTGACTAGCTAGT 60.080 45.833 26.35 26.35 44.24 2.57
161 162 4.274950 GTGAGCCTCTAGTTGACTAGCTAG 59.725 50.000 19.44 19.44 44.24 3.42
162 163 4.080243 AGTGAGCCTCTAGTTGACTAGCTA 60.080 45.833 12.30 0.00 44.24 3.32
163 164 3.020984 GTGAGCCTCTAGTTGACTAGCT 58.979 50.000 12.30 7.92 44.24 3.32
164 165 3.020984 AGTGAGCCTCTAGTTGACTAGC 58.979 50.000 12.30 3.61 44.24 3.42
165 166 4.819630 CCTAGTGAGCCTCTAGTTGACTAG 59.180 50.000 11.14 11.14 45.57 2.57
166 167 4.385421 CCCTAGTGAGCCTCTAGTTGACTA 60.385 50.000 0.00 0.00 34.72 2.59
167 168 3.626222 CCCTAGTGAGCCTCTAGTTGACT 60.626 52.174 0.00 0.00 34.72 3.41
168 169 2.691011 CCCTAGTGAGCCTCTAGTTGAC 59.309 54.545 0.00 0.00 34.72 3.18
169 170 2.581246 TCCCTAGTGAGCCTCTAGTTGA 59.419 50.000 0.00 4.76 34.72 3.18
170 171 3.019799 TCCCTAGTGAGCCTCTAGTTG 57.980 52.381 0.00 3.20 34.72 3.16
171 172 3.983533 ATCCCTAGTGAGCCTCTAGTT 57.016 47.619 0.00 0.00 34.72 2.24
172 173 4.355588 ACATATCCCTAGTGAGCCTCTAGT 59.644 45.833 0.00 0.00 34.72 2.57
173 174 4.929479 ACATATCCCTAGTGAGCCTCTAG 58.071 47.826 0.00 0.00 35.86 2.43
174 175 5.080337 CAACATATCCCTAGTGAGCCTCTA 58.920 45.833 0.00 0.00 0.00 2.43
175 176 3.900601 CAACATATCCCTAGTGAGCCTCT 59.099 47.826 0.00 0.00 0.00 3.69
176 177 3.643792 ACAACATATCCCTAGTGAGCCTC 59.356 47.826 0.00 0.00 0.00 4.70
177 178 3.389329 CACAACATATCCCTAGTGAGCCT 59.611 47.826 0.00 0.00 0.00 4.58
178 179 3.495100 CCACAACATATCCCTAGTGAGCC 60.495 52.174 0.00 0.00 0.00 4.70
179 180 3.134804 ACCACAACATATCCCTAGTGAGC 59.865 47.826 0.00 0.00 0.00 4.26
180 181 4.651503 AGACCACAACATATCCCTAGTGAG 59.348 45.833 0.00 0.00 0.00 3.51
181 182 4.620723 AGACCACAACATATCCCTAGTGA 58.379 43.478 0.00 0.00 0.00 3.41
182 183 6.042093 ACATAGACCACAACATATCCCTAGTG 59.958 42.308 0.00 0.00 0.00 2.74
183 184 6.143915 ACATAGACCACAACATATCCCTAGT 58.856 40.000 0.00 0.00 0.00 2.57
184 185 6.672266 ACATAGACCACAACATATCCCTAG 57.328 41.667 0.00 0.00 0.00 3.02
185 186 8.736097 AATACATAGACCACAACATATCCCTA 57.264 34.615 0.00 0.00 0.00 3.53
186 187 7.292356 TGAATACATAGACCACAACATATCCCT 59.708 37.037 0.00 0.00 0.00 4.20
187 188 7.387948 GTGAATACATAGACCACAACATATCCC 59.612 40.741 0.00 0.00 0.00 3.85
188 189 7.931407 TGTGAATACATAGACCACAACATATCC 59.069 37.037 0.00 0.00 35.16 2.59
189 190 8.765219 GTGTGAATACATAGACCACAACATATC 58.235 37.037 0.00 0.00 39.13 1.63
190 191 8.264347 TGTGTGAATACATAGACCACAACATAT 58.736 33.333 0.00 0.00 39.13 1.78
191 192 7.616313 TGTGTGAATACATAGACCACAACATA 58.384 34.615 0.00 0.00 39.13 2.29
192 193 6.472016 TGTGTGAATACATAGACCACAACAT 58.528 36.000 0.00 0.00 39.13 2.71
193 194 5.859495 TGTGTGAATACATAGACCACAACA 58.141 37.500 0.00 0.00 39.13 3.33
194 195 6.371548 ACATGTGTGAATACATAGACCACAAC 59.628 38.462 0.00 0.00 39.17 3.32
195 196 6.472016 ACATGTGTGAATACATAGACCACAA 58.528 36.000 0.00 0.00 39.17 3.33
196 197 6.048732 ACATGTGTGAATACATAGACCACA 57.951 37.500 0.00 0.00 39.17 4.17
197 198 8.662781 AATACATGTGTGAATACATAGACCAC 57.337 34.615 9.11 0.00 39.17 4.16
198 199 9.758651 GTAATACATGTGTGAATACATAGACCA 57.241 33.333 9.11 0.00 39.17 4.02
199 200 8.912658 CGTAATACATGTGTGAATACATAGACC 58.087 37.037 9.11 0.00 39.17 3.85
200 201 9.673454 TCGTAATACATGTGTGAATACATAGAC 57.327 33.333 9.11 0.00 39.17 2.59
205 206 8.822855 GGAAATCGTAATACATGTGTGAATACA 58.177 33.333 9.11 0.00 34.63 2.29
206 207 8.002107 CGGAAATCGTAATACATGTGTGAATAC 58.998 37.037 9.11 0.76 0.00 1.89
207 208 7.170151 CCGGAAATCGTAATACATGTGTGAATA 59.830 37.037 9.11 0.00 37.11 1.75
208 209 6.018262 CCGGAAATCGTAATACATGTGTGAAT 60.018 38.462 9.11 0.00 37.11 2.57
209 210 5.292345 CCGGAAATCGTAATACATGTGTGAA 59.708 40.000 9.11 0.00 37.11 3.18
210 211 4.806775 CCGGAAATCGTAATACATGTGTGA 59.193 41.667 9.11 0.00 37.11 3.58
211 212 4.806775 TCCGGAAATCGTAATACATGTGTG 59.193 41.667 9.11 0.00 37.11 3.82
212 213 5.013568 TCCGGAAATCGTAATACATGTGT 57.986 39.130 9.11 0.00 37.11 3.72
213 214 7.170151 TGTTATCCGGAAATCGTAATACATGTG 59.830 37.037 9.01 0.00 37.11 3.21
214 215 7.170320 GTGTTATCCGGAAATCGTAATACATGT 59.830 37.037 9.01 2.69 37.11 3.21
215 216 7.170151 TGTGTTATCCGGAAATCGTAATACATG 59.830 37.037 9.01 0.00 31.67 3.21
216 217 7.211573 TGTGTTATCCGGAAATCGTAATACAT 58.788 34.615 9.01 0.00 31.67 2.29
217 218 6.571605 TGTGTTATCCGGAAATCGTAATACA 58.428 36.000 9.01 13.79 33.00 2.29
218 219 7.467557 TTGTGTTATCCGGAAATCGTAATAC 57.532 36.000 9.01 11.23 37.11 1.89
219 220 8.665643 AATTGTGTTATCCGGAAATCGTAATA 57.334 30.769 9.01 0.00 37.11 0.98
220 221 7.562454 AATTGTGTTATCCGGAAATCGTAAT 57.438 32.000 9.01 3.30 37.11 1.89
221 222 6.988622 AATTGTGTTATCCGGAAATCGTAA 57.011 33.333 9.01 0.00 37.11 3.18
222 223 9.414295 CTATAATTGTGTTATCCGGAAATCGTA 57.586 33.333 9.01 0.00 37.11 3.43
223 224 7.095355 GCTATAATTGTGTTATCCGGAAATCGT 60.095 37.037 9.01 0.00 37.11 3.73
224 225 7.095397 TGCTATAATTGTGTTATCCGGAAATCG 60.095 37.037 9.01 0.00 38.88 3.34
225 226 8.094798 TGCTATAATTGTGTTATCCGGAAATC 57.905 34.615 9.01 1.80 0.00 2.17
226 227 8.514594 CATGCTATAATTGTGTTATCCGGAAAT 58.485 33.333 9.01 0.00 0.00 2.17
227 228 7.717436 TCATGCTATAATTGTGTTATCCGGAAA 59.283 33.333 9.01 0.99 0.00 3.13
228 229 7.220740 TCATGCTATAATTGTGTTATCCGGAA 58.779 34.615 9.01 0.00 0.00 4.30
229 230 6.764379 TCATGCTATAATTGTGTTATCCGGA 58.236 36.000 6.61 6.61 0.00 5.14
230 231 7.041440 TGTTCATGCTATAATTGTGTTATCCGG 60.041 37.037 0.00 0.00 0.00 5.14
231 232 7.860613 TGTTCATGCTATAATTGTGTTATCCG 58.139 34.615 0.00 0.00 0.00 4.18
237 238 9.394767 TGTCTATTGTTCATGCTATAATTGTGT 57.605 29.630 0.00 0.00 0.00 3.72
245 246 8.913487 TGATGATTGTCTATTGTTCATGCTAT 57.087 30.769 0.00 0.00 0.00 2.97
246 247 8.780249 CATGATGATTGTCTATTGTTCATGCTA 58.220 33.333 0.00 0.00 0.00 3.49
247 248 7.501225 TCATGATGATTGTCTATTGTTCATGCT 59.499 33.333 0.00 0.00 33.46 3.79
248 249 7.645402 TCATGATGATTGTCTATTGTTCATGC 58.355 34.615 0.00 0.00 33.46 4.06
249 250 9.447040 GTTCATGATGATTGTCTATTGTTCATG 57.553 33.333 0.00 0.00 34.37 3.07
250 251 9.181061 TGTTCATGATGATTGTCTATTGTTCAT 57.819 29.630 0.00 0.00 0.00 2.57
251 252 8.564509 TGTTCATGATGATTGTCTATTGTTCA 57.435 30.769 0.00 0.00 0.00 3.18
252 253 9.499585 CTTGTTCATGATGATTGTCTATTGTTC 57.500 33.333 0.00 0.00 0.00 3.18
253 254 8.464404 CCTTGTTCATGATGATTGTCTATTGTT 58.536 33.333 0.00 0.00 0.00 2.83
254 255 7.830697 TCCTTGTTCATGATGATTGTCTATTGT 59.169 33.333 0.00 0.00 0.00 2.71
255 256 8.217131 TCCTTGTTCATGATGATTGTCTATTG 57.783 34.615 0.00 0.00 0.00 1.90
256 257 8.812513 TTCCTTGTTCATGATGATTGTCTATT 57.187 30.769 0.00 0.00 0.00 1.73
257 258 8.812513 TTTCCTTGTTCATGATGATTGTCTAT 57.187 30.769 0.00 0.00 0.00 1.98
258 259 8.812513 ATTTCCTTGTTCATGATGATTGTCTA 57.187 30.769 0.00 0.00 0.00 2.59
259 260 7.713734 ATTTCCTTGTTCATGATGATTGTCT 57.286 32.000 0.00 0.00 0.00 3.41
290 291 9.533831 CCCTAGAGGCAATAATAAAATGGTTAT 57.466 33.333 0.00 0.00 0.00 1.89
291 292 8.934023 CCCTAGAGGCAATAATAAAATGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
292 293 7.839680 CCCTAGAGGCAATAATAAAATGGTT 57.160 36.000 0.00 0.00 0.00 3.67
308 309 4.137543 GGTGTTGAAATATGCCCTAGAGG 58.862 47.826 0.00 0.00 39.47 3.69
309 310 3.809832 CGGTGTTGAAATATGCCCTAGAG 59.190 47.826 0.00 0.00 0.00 2.43
310 311 3.433031 CCGGTGTTGAAATATGCCCTAGA 60.433 47.826 0.00 0.00 0.00 2.43
311 312 2.878406 CCGGTGTTGAAATATGCCCTAG 59.122 50.000 0.00 0.00 0.00 3.02
312 313 2.422235 CCCGGTGTTGAAATATGCCCTA 60.422 50.000 0.00 0.00 0.00 3.53
313 314 1.684869 CCCGGTGTTGAAATATGCCCT 60.685 52.381 0.00 0.00 0.00 5.19
314 315 0.744281 CCCGGTGTTGAAATATGCCC 59.256 55.000 0.00 0.00 0.00 5.36
315 316 0.744281 CCCCGGTGTTGAAATATGCC 59.256 55.000 0.00 0.00 0.00 4.40
316 317 0.744281 CCCCCGGTGTTGAAATATGC 59.256 55.000 0.00 0.00 0.00 3.14
317 318 2.137810 ACCCCCGGTGTTGAAATATG 57.862 50.000 0.00 0.00 32.98 1.78
329 330 2.111999 ATATGTCGATGCACCCCCGG 62.112 60.000 0.00 0.00 0.00 5.73
330 331 0.950555 CATATGTCGATGCACCCCCG 60.951 60.000 0.00 0.00 0.00 5.73
331 332 0.396435 TCATATGTCGATGCACCCCC 59.604 55.000 1.90 0.00 0.00 5.40
332 333 2.079158 CATCATATGTCGATGCACCCC 58.921 52.381 1.90 0.00 34.32 4.95
338 339 2.415512 CTGCCTGCATCATATGTCGATG 59.584 50.000 1.90 0.63 42.62 3.84
339 340 2.038164 ACTGCCTGCATCATATGTCGAT 59.962 45.455 1.90 0.00 0.00 3.59
340 341 1.413812 ACTGCCTGCATCATATGTCGA 59.586 47.619 1.90 0.00 0.00 4.20
341 342 1.875009 ACTGCCTGCATCATATGTCG 58.125 50.000 1.90 0.00 0.00 4.35
342 343 3.007290 TCCTACTGCCTGCATCATATGTC 59.993 47.826 1.90 0.00 0.00 3.06
343 344 2.974794 TCCTACTGCCTGCATCATATGT 59.025 45.455 1.90 0.00 0.00 2.29
344 345 3.690475 TCCTACTGCCTGCATCATATG 57.310 47.619 0.00 0.00 0.00 1.78
345 346 3.054582 CCATCCTACTGCCTGCATCATAT 60.055 47.826 0.00 0.00 0.00 1.78
346 347 2.303890 CCATCCTACTGCCTGCATCATA 59.696 50.000 0.00 0.00 0.00 2.15
347 348 1.073444 CCATCCTACTGCCTGCATCAT 59.927 52.381 0.00 0.00 0.00 2.45
348 349 0.471191 CCATCCTACTGCCTGCATCA 59.529 55.000 0.00 0.00 0.00 3.07
349 350 0.761187 TCCATCCTACTGCCTGCATC 59.239 55.000 0.00 0.00 0.00 3.91
350 351 1.073444 CATCCATCCTACTGCCTGCAT 59.927 52.381 0.00 0.00 0.00 3.96
351 352 0.471191 CATCCATCCTACTGCCTGCA 59.529 55.000 0.00 0.00 0.00 4.41
352 353 0.250640 CCATCCATCCTACTGCCTGC 60.251 60.000 0.00 0.00 0.00 4.85
353 354 1.135094 ACCATCCATCCTACTGCCTG 58.865 55.000 0.00 0.00 0.00 4.85
354 355 1.135094 CACCATCCATCCTACTGCCT 58.865 55.000 0.00 0.00 0.00 4.75
355 356 0.109342 CCACCATCCATCCTACTGCC 59.891 60.000 0.00 0.00 0.00 4.85
356 357 1.071385 CTCCACCATCCATCCTACTGC 59.929 57.143 0.00 0.00 0.00 4.40
357 358 1.696336 CCTCCACCATCCATCCTACTG 59.304 57.143 0.00 0.00 0.00 2.74
358 359 1.580658 TCCTCCACCATCCATCCTACT 59.419 52.381 0.00 0.00 0.00 2.57
359 360 1.974236 CTCCTCCACCATCCATCCTAC 59.026 57.143 0.00 0.00 0.00 3.18
360 361 1.762827 GCTCCTCCACCATCCATCCTA 60.763 57.143 0.00 0.00 0.00 2.94
361 362 1.059006 GCTCCTCCACCATCCATCCT 61.059 60.000 0.00 0.00 0.00 3.24
362 363 1.348008 TGCTCCTCCACCATCCATCC 61.348 60.000 0.00 0.00 0.00 3.51
363 364 0.769873 ATGCTCCTCCACCATCCATC 59.230 55.000 0.00 0.00 0.00 3.51
364 365 0.477204 CATGCTCCTCCACCATCCAT 59.523 55.000 0.00 0.00 0.00 3.41
365 366 0.915872 ACATGCTCCTCCACCATCCA 60.916 55.000 0.00 0.00 0.00 3.41
366 367 0.179034 GACATGCTCCTCCACCATCC 60.179 60.000 0.00 0.00 0.00 3.51
367 368 0.531532 CGACATGCTCCTCCACCATC 60.532 60.000 0.00 0.00 0.00 3.51
368 369 1.267574 ACGACATGCTCCTCCACCAT 61.268 55.000 0.00 0.00 0.00 3.55
369 370 1.913262 ACGACATGCTCCTCCACCA 60.913 57.895 0.00 0.00 0.00 4.17
370 371 1.448540 CACGACATGCTCCTCCACC 60.449 63.158 0.00 0.00 0.00 4.61
371 372 1.448540 CCACGACATGCTCCTCCAC 60.449 63.158 0.00 0.00 0.00 4.02
372 373 2.981302 CCACGACATGCTCCTCCA 59.019 61.111 0.00 0.00 0.00 3.86
373 374 2.512515 GCCACGACATGCTCCTCC 60.513 66.667 0.00 0.00 0.00 4.30
374 375 1.153289 ATGCCACGACATGCTCCTC 60.153 57.895 0.00 0.00 0.00 3.71
375 376 1.153289 GATGCCACGACATGCTCCT 60.153 57.895 0.00 0.00 0.00 3.69
376 377 2.528743 CGATGCCACGACATGCTCC 61.529 63.158 0.00 0.00 35.09 4.70
377 378 0.527600 TACGATGCCACGACATGCTC 60.528 55.000 6.64 0.00 37.03 4.26
378 379 0.528466 CTACGATGCCACGACATGCT 60.528 55.000 6.64 0.00 37.03 3.79
379 380 0.806102 ACTACGATGCCACGACATGC 60.806 55.000 6.64 0.00 37.03 4.06
380 381 1.200483 GACTACGATGCCACGACATG 58.800 55.000 6.64 0.00 37.03 3.21
381 382 1.103803 AGACTACGATGCCACGACAT 58.896 50.000 6.64 0.00 37.03 3.06
382 383 0.170339 CAGACTACGATGCCACGACA 59.830 55.000 6.64 0.00 37.03 4.35
383 384 0.450583 TCAGACTACGATGCCACGAC 59.549 55.000 6.64 0.00 37.03 4.34
384 385 1.333931 GATCAGACTACGATGCCACGA 59.666 52.381 6.64 0.00 37.03 4.35
385 386 1.759994 GATCAGACTACGATGCCACG 58.240 55.000 0.00 0.00 39.31 4.94
386 387 1.600663 CCGATCAGACTACGATGCCAC 60.601 57.143 0.00 0.00 0.00 5.01
387 388 0.668535 CCGATCAGACTACGATGCCA 59.331 55.000 0.00 0.00 0.00 4.92
388 389 0.669077 ACCGATCAGACTACGATGCC 59.331 55.000 0.00 0.00 0.00 4.40
389 390 1.065701 ACACCGATCAGACTACGATGC 59.934 52.381 0.00 0.00 0.00 3.91
390 391 2.541794 CCACACCGATCAGACTACGATG 60.542 54.545 0.00 0.00 0.00 3.84
391 392 1.676529 CCACACCGATCAGACTACGAT 59.323 52.381 0.00 0.00 0.00 3.73
392 393 1.092348 CCACACCGATCAGACTACGA 58.908 55.000 0.00 0.00 0.00 3.43
393 394 0.809385 ACCACACCGATCAGACTACG 59.191 55.000 0.00 0.00 0.00 3.51
394 395 2.093106 AGACCACACCGATCAGACTAC 58.907 52.381 0.00 0.00 0.00 2.73
395 396 2.492088 CAAGACCACACCGATCAGACTA 59.508 50.000 0.00 0.00 0.00 2.59
396 397 1.273606 CAAGACCACACCGATCAGACT 59.726 52.381 0.00 0.00 0.00 3.24
397 398 1.000955 ACAAGACCACACCGATCAGAC 59.999 52.381 0.00 0.00 0.00 3.51
398 399 1.000843 CACAAGACCACACCGATCAGA 59.999 52.381 0.00 0.00 0.00 3.27
399 400 1.432514 CACAAGACCACACCGATCAG 58.567 55.000 0.00 0.00 0.00 2.90
400 401 0.602638 GCACAAGACCACACCGATCA 60.603 55.000 0.00 0.00 0.00 2.92
401 402 0.602638 TGCACAAGACCACACCGATC 60.603 55.000 0.00 0.00 0.00 3.69
402 403 0.036732 ATGCACAAGACCACACCGAT 59.963 50.000 0.00 0.00 0.00 4.18
403 404 0.884259 CATGCACAAGACCACACCGA 60.884 55.000 0.00 0.00 0.00 4.69
404 405 0.884259 TCATGCACAAGACCACACCG 60.884 55.000 0.00 0.00 0.00 4.94
405 406 0.593128 GTCATGCACAAGACCACACC 59.407 55.000 0.00 0.00 0.00 4.16
406 407 1.265095 CTGTCATGCACAAGACCACAC 59.735 52.381 11.79 0.00 33.31 3.82
407 408 1.140652 TCTGTCATGCACAAGACCACA 59.859 47.619 11.79 0.00 33.31 4.17
408 409 1.882912 TCTGTCATGCACAAGACCAC 58.117 50.000 11.79 0.00 33.31 4.16
409 410 2.618241 GTTTCTGTCATGCACAAGACCA 59.382 45.455 11.79 2.21 33.31 4.02
410 411 2.618241 TGTTTCTGTCATGCACAAGACC 59.382 45.455 11.79 0.00 33.31 3.85
411 412 3.969117 TGTTTCTGTCATGCACAAGAC 57.031 42.857 8.41 8.41 33.31 3.01
412 413 4.492791 CATGTTTCTGTCATGCACAAGA 57.507 40.909 0.00 0.00 36.68 3.02
419 420 3.924073 CCACAATGCATGTTTCTGTCATG 59.076 43.478 0.00 0.00 41.46 3.07
420 421 3.615592 GCCACAATGCATGTTTCTGTCAT 60.616 43.478 0.00 0.00 41.46 3.06
421 422 2.288334 GCCACAATGCATGTTTCTGTCA 60.288 45.455 0.00 0.00 41.46 3.58
422 423 2.331194 GCCACAATGCATGTTTCTGTC 58.669 47.619 0.00 0.00 41.46 3.51
423 424 1.001181 GGCCACAATGCATGTTTCTGT 59.999 47.619 0.00 0.00 41.46 3.41
424 425 1.717194 GGCCACAATGCATGTTTCTG 58.283 50.000 0.00 0.00 41.46 3.02
425 426 0.244450 CGGCCACAATGCATGTTTCT 59.756 50.000 2.24 0.00 41.46 2.52
426 427 0.243365 TCGGCCACAATGCATGTTTC 59.757 50.000 2.24 0.00 41.46 2.78
427 428 0.678395 TTCGGCCACAATGCATGTTT 59.322 45.000 2.24 0.00 41.46 2.83
428 429 0.896923 ATTCGGCCACAATGCATGTT 59.103 45.000 2.24 0.00 41.46 2.71
429 430 0.457035 GATTCGGCCACAATGCATGT 59.543 50.000 2.24 0.00 45.34 3.21
430 431 0.593008 CGATTCGGCCACAATGCATG 60.593 55.000 2.24 0.00 0.00 4.06
431 432 1.727511 CCGATTCGGCCACAATGCAT 61.728 55.000 12.95 0.00 41.17 3.96
432 433 2.405805 CCGATTCGGCCACAATGCA 61.406 57.895 12.95 0.00 41.17 3.96
433 434 2.408835 CCGATTCGGCCACAATGC 59.591 61.111 12.95 0.00 41.17 3.56
449 450 1.064463 TCTGGTGCATGGATTTCCTCC 60.064 52.381 0.00 0.00 45.19 4.30
450 451 2.425143 TCTGGTGCATGGATTTCCTC 57.575 50.000 0.00 0.00 36.82 3.71
451 452 2.905415 TTCTGGTGCATGGATTTCCT 57.095 45.000 0.00 0.00 36.82 3.36
452 453 2.167075 CCTTTCTGGTGCATGGATTTCC 59.833 50.000 0.00 0.00 0.00 3.13
453 454 2.167075 CCCTTTCTGGTGCATGGATTTC 59.833 50.000 0.00 0.00 0.00 2.17
454 455 2.181975 CCCTTTCTGGTGCATGGATTT 58.818 47.619 0.00 0.00 0.00 2.17
455 456 1.077663 ACCCTTTCTGGTGCATGGATT 59.922 47.619 0.00 0.00 37.20 3.01
456 457 0.706433 ACCCTTTCTGGTGCATGGAT 59.294 50.000 0.00 0.00 37.20 3.41
457 458 0.038166 GACCCTTTCTGGTGCATGGA 59.962 55.000 0.00 0.00 39.24 3.41
464 465 0.185175 GTGTTGGGACCCTTTCTGGT 59.815 55.000 13.00 0.00 42.79 4.00
474 475 3.050275 GCTCGCCAGTGTTGGGAC 61.050 66.667 0.00 0.00 45.16 4.46
479 480 2.029288 CATCGTGCTCGCCAGTGTT 61.029 57.895 2.69 0.00 36.96 3.32
480 481 2.433145 CATCGTGCTCGCCAGTGT 60.433 61.111 2.69 0.00 36.96 3.55
485 486 3.665675 AAGGGTCATCGTGCTCGCC 62.666 63.158 2.69 0.00 36.96 5.54
507 508 1.599797 CCGTTCCTTTCGGTGCCTT 60.600 57.895 0.00 0.00 42.62 4.35
515 516 0.736672 GCCGAGAGACCGTTCCTTTC 60.737 60.000 0.00 0.00 0.00 2.62
516 517 1.292541 GCCGAGAGACCGTTCCTTT 59.707 57.895 0.00 0.00 0.00 3.11
520 521 1.519455 CATGGCCGAGAGACCGTTC 60.519 63.158 0.00 0.00 0.00 3.95
543 544 4.393155 ATCGCACGGCCAGCTTCA 62.393 61.111 14.50 0.11 0.00 3.02
564 565 2.742372 CCCTTCTGTGGTTCCGCG 60.742 66.667 0.00 0.00 0.00 6.46
567 568 0.038166 TCATGCCCTTCTGTGGTTCC 59.962 55.000 0.00 0.00 0.00 3.62
574 575 1.523258 CGCCTCTCATGCCCTTCTG 60.523 63.158 0.00 0.00 0.00 3.02
575 576 2.739996 CCGCCTCTCATGCCCTTCT 61.740 63.158 0.00 0.00 0.00 2.85
577 578 3.801997 CCCGCCTCTCATGCCCTT 61.802 66.667 0.00 0.00 0.00 3.95
585 586 2.266055 CACTGTTCCCCGCCTCTC 59.734 66.667 0.00 0.00 0.00 3.20
594 595 0.535553 TTGTAACGGGGCACTGTTCC 60.536 55.000 18.48 6.32 44.81 3.62
597 598 1.072505 CCTTGTAACGGGGCACTGT 59.927 57.895 0.00 0.00 37.99 3.55
621 622 4.502950 CCTTCTAGTGATCTTCTGGATGGC 60.503 50.000 16.42 0.00 33.61 4.40
673 674 0.533085 TTCGTTCGGGATGCAACACA 60.533 50.000 0.00 0.00 0.00 3.72
683 684 3.047877 GTGGTGGCTTCGTTCGGG 61.048 66.667 0.00 0.00 0.00 5.14
686 687 0.947180 TTAGCGTGGTGGCTTCGTTC 60.947 55.000 0.00 0.00 41.39 3.95
703 705 2.025416 CACATCCAGGTTGGGGTGATTA 60.025 50.000 12.46 0.00 42.09 1.75
721 723 3.680786 CGACGTGCCTCCCTCACA 61.681 66.667 0.00 0.00 34.27 3.58
723 725 3.371063 GACGACGTGCCTCCCTCA 61.371 66.667 4.58 0.00 0.00 3.86
762 764 3.952628 CTTCCCGGGTGTCGCTTCC 62.953 68.421 22.86 0.00 37.59 3.46
763 765 2.434359 CTTCCCGGGTGTCGCTTC 60.434 66.667 22.86 0.00 37.59 3.86
764 766 4.699522 GCTTCCCGGGTGTCGCTT 62.700 66.667 22.86 0.00 37.59 4.68
792 794 0.323302 GAGCTATTGGCCCCTCTAGC 59.677 60.000 0.00 7.56 43.05 3.42
794 796 1.472662 GCGAGCTATTGGCCCCTCTA 61.473 60.000 0.00 0.00 43.05 2.43
806 808 1.227883 CTCTACTCCCGGCGAGCTA 60.228 63.158 9.30 9.56 43.01 3.32
865 867 1.672854 CGCTTGTCCCCTACATCCGA 61.673 60.000 0.00 0.00 38.10 4.55
872 874 0.899720 CTACCAACGCTTGTCCCCTA 59.100 55.000 0.00 0.00 0.00 3.53
880 882 1.302511 CCAGTGCCTACCAACGCTT 60.303 57.895 0.00 0.00 0.00 4.68
881 883 2.172483 CTCCAGTGCCTACCAACGCT 62.172 60.000 0.00 0.00 0.00 5.07
948 950 0.038526 CTGACTAGGCCGTTGTTCGT 60.039 55.000 0.00 0.00 37.94 3.85
962 964 3.710722 CCTCCGGCAAGGCTGACT 61.711 66.667 0.00 0.00 40.77 3.41
974 976 3.058160 CAACTGCCTTGGCCTCCG 61.058 66.667 3.32 0.00 0.00 4.63
1007 1009 4.506255 CATCCCCGGCTTCCACCC 62.506 72.222 0.00 0.00 0.00 4.61
1031 1033 0.321653 GGTGGGATCTTTGACAGCGT 60.322 55.000 0.00 0.00 0.00 5.07
1091 1094 1.340991 CCGGTGGATTGTCCTTGGAAT 60.341 52.381 0.00 0.00 37.46 3.01
1094 1097 0.255890 ATCCGGTGGATTGTCCTTGG 59.744 55.000 0.00 0.00 39.79 3.61
1100 1103 1.823295 CTCGGATCCGGTGGATTGT 59.177 57.895 32.79 0.00 43.27 2.71
1103 1106 1.838846 ATGCTCGGATCCGGTGGAT 60.839 57.895 32.79 26.45 46.28 3.41
1104 1107 2.443952 ATGCTCGGATCCGGTGGA 60.444 61.111 32.79 25.52 40.25 4.02
1123 1126 4.735132 GGTGACGGCTAGCGTGCA 62.735 66.667 15.27 7.33 34.04 4.57
1136 1139 0.693622 TTGTGGCCTAAATCCGGTGA 59.306 50.000 3.32 0.00 0.00 4.02
1177 1181 2.278013 GGTTCTAGAGTCGCCGCG 60.278 66.667 6.39 6.39 0.00 6.46
1239 1243 0.462759 CCCTCCCTTCGATGTCTTGC 60.463 60.000 0.00 0.00 0.00 4.01
1250 1254 3.960313 AGTCCCAGCCCCTCCCTT 61.960 66.667 0.00 0.00 0.00 3.95
1277 1281 2.941583 GACCCTTCCCCCAGCCTT 60.942 66.667 0.00 0.00 0.00 4.35
1347 1351 2.282462 GCTGGGTGTGGGTCTTGG 60.282 66.667 0.00 0.00 0.00 3.61
1494 1517 0.179045 CTACCCTTTGCCGGATCCTG 60.179 60.000 5.05 4.14 0.00 3.86
1502 1525 1.678970 CCCTGCACTACCCTTTGCC 60.679 63.158 0.00 0.00 38.00 4.52
1503 1526 2.343426 GCCCTGCACTACCCTTTGC 61.343 63.158 0.00 0.00 39.33 3.68
1654 1678 2.507407 ACAGGGTGTTGACAAGTGTT 57.493 45.000 0.00 0.00 0.00 3.32
1764 1789 2.543578 GCGGAATGCACTTCAGACA 58.456 52.632 11.17 0.00 45.45 3.41
1856 1881 5.163457 ACAAAACAAACATTACCAGTCTGGG 60.163 40.000 23.06 7.53 43.37 4.45
1878 1903 7.780008 TTTCAGTAGATTTCTTTTGTCGACA 57.220 32.000 15.76 15.76 0.00 4.35
1889 1914 7.490402 CAGGCCATGAAATTTTCAGTAGATTTC 59.510 37.037 16.34 0.07 43.98 2.17
1895 1920 6.211184 ACAATCAGGCCATGAAATTTTCAGTA 59.789 34.615 16.34 0.00 43.98 2.74
1899 1924 7.225341 GGATAACAATCAGGCCATGAAATTTTC 59.775 37.037 5.01 2.05 42.53 2.29
1970 1995 6.555738 TCATTTATGCCATCCCTCAAATGATT 59.444 34.615 7.97 0.00 37.43 2.57
2000 2025 9.461312 TGAAGTTTTTGCACTCCTATATAACAT 57.539 29.630 0.00 0.00 0.00 2.71
2043 2068 9.268268 TGTACGTGTTGAAAGAAGAAATTCTAT 57.732 29.630 0.00 0.00 0.00 1.98
2098 2228 0.324614 AGCACGACCATGACCATTCA 59.675 50.000 0.00 0.00 35.73 2.57
2110 2240 3.391049 ACTCTTACTCCAAAAGCACGAC 58.609 45.455 0.00 0.00 0.00 4.34
2111 2241 3.746045 ACTCTTACTCCAAAAGCACGA 57.254 42.857 0.00 0.00 0.00 4.35
2113 2243 5.065988 TGTTCAACTCTTACTCCAAAAGCAC 59.934 40.000 0.00 0.00 0.00 4.40
2114 2244 5.189928 TGTTCAACTCTTACTCCAAAAGCA 58.810 37.500 0.00 0.00 0.00 3.91
2123 2261 3.053826 ACCCCCTTGTTCAACTCTTACT 58.946 45.455 0.00 0.00 0.00 2.24
2131 2269 0.754957 CTGCACACCCCCTTGTTCAA 60.755 55.000 0.00 0.00 0.00 2.69
2142 2280 5.402270 GTCATTTACATTCAAACTGCACACC 59.598 40.000 0.00 0.00 0.00 4.16
2154 2292 7.380065 GTCTCTCCATACTCGTCATTTACATTC 59.620 40.741 0.00 0.00 0.00 2.67
2170 2308 4.536090 ACAAATGACCTTGGTCTCTCCATA 59.464 41.667 19.11 0.00 46.60 2.74
2188 2326 6.379703 TGCATTAGCCACACCTAATTACAAAT 59.620 34.615 0.00 0.00 41.13 2.32
2193 2331 5.750524 TCTTGCATTAGCCACACCTAATTA 58.249 37.500 0.00 0.00 41.13 1.40
2199 2337 2.162408 GTCTTCTTGCATTAGCCACACC 59.838 50.000 0.00 0.00 41.13 4.16
2222 2360 0.108472 CTCACCATGAAGAGCTCGCA 60.108 55.000 8.37 11.37 0.00 5.10
2224 2362 1.476085 AGTCTCACCATGAAGAGCTCG 59.524 52.381 8.37 0.00 0.00 5.03
2288 2426 3.003763 AGGCCAACTCTCGGTCCC 61.004 66.667 5.01 0.00 0.00 4.46
2333 2661 2.273449 CCCAGCCTAAGCCACCAG 59.727 66.667 0.00 0.00 41.25 4.00
2336 2664 2.048603 CAAGCCCAGCCTAAGCCAC 61.049 63.158 0.00 0.00 41.25 5.01
2352 2680 2.589442 GCCGTCGTCACCCAACAA 60.589 61.111 0.00 0.00 0.00 2.83
2365 2693 3.699894 CTCTGGAGGTGCTGCCGT 61.700 66.667 0.00 0.00 43.70 5.68
2373 2701 2.286523 CCCGAGCAACTCTGGAGGT 61.287 63.158 0.00 0.00 37.09 3.85
2400 2728 0.684479 ACGAGACATAGCTGCCTCCA 60.684 55.000 0.00 0.00 28.67 3.86
2412 2740 4.848562 AAGATTGACTGTGTACGAGACA 57.151 40.909 0.00 0.00 34.94 3.41
2423 2751 6.151648 ACAACATATCCACCAAAGATTGACTG 59.848 38.462 0.00 0.00 0.00 3.51
2425 2753 6.515272 ACAACATATCCACCAAAGATTGAC 57.485 37.500 0.00 0.00 0.00 3.18
2431 2759 6.271488 ACATGAACAACATATCCACCAAAG 57.729 37.500 0.00 0.00 37.46 2.77
2436 2764 7.425606 GGGAAATACATGAACAACATATCCAC 58.574 38.462 0.00 0.00 37.46 4.02
2461 2789 3.851403 GCATGTTGCATGTTAGTAAACCG 59.149 43.478 10.31 0.00 44.26 4.44
2510 2838 7.668886 AGTGAGATCAACTTTTTCCATGAGATT 59.331 33.333 0.00 0.00 0.00 2.40
2516 2844 5.012893 GGGAGTGAGATCAACTTTTTCCAT 58.987 41.667 0.00 0.00 0.00 3.41
2517 2845 4.398319 GGGAGTGAGATCAACTTTTTCCA 58.602 43.478 0.00 0.00 0.00 3.53
2519 2847 4.065789 ACGGGAGTGAGATCAACTTTTTC 58.934 43.478 0.00 0.00 44.82 2.29
2548 2876 1.372683 CCCTGGTGTGACTCACTGG 59.627 63.158 10.54 9.51 45.50 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.