>input_sequence_75206
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-----------------------------------------ATGGCGGGGGTGGAAGCCGGGGATGCGACCGACGCTGTC
AAAGATCCCACCATGGGAG-CCTGTTGCGGAGCTCCACAACAACCACTCGTGGATTCCAAGGACAATCCACCGGATCCGA
GCATGTGCACGCTAGCCGTCACCGGATTTAGGCCACAAC-AAGCAATGGCCGTTCCCCCTCGCGGCGACTCTAGAACCAC
CTCCATGTGGCCCTCCACCATACAGCCCCCACGATGCGGTGGGCAAGACATCGAAGGGAGGGGCTGGGACTGGCAAGGCC
AAGGCTGGGGGAAGGGTCGCATCGATGTGGGGCACCACCGTGGATGTCGAGGGGGGTCACTGGAGCTAGGCCAAGACCCA
CACCCAGCACAGACAGATCACGTGTCGCCGCAGCCAACGG------G-----GGCCGGGAGCTTGGGTGAGGATCCATGT
CACAGGGAAGACGGGGGCACGGCAAAGCAGGGCTC--------CGGGGGGAGACGAGGGAGGGCACGGAGGGGGCCCAGG
ATCCGGCAAAGGGTAGTGCAGGGCCGGCCGGAGCAGGGAGATGGAGTGTGCACCGCCGCGCGG-GCTCACCCTTCGCGGG
AGTAG---------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G315800
AGATACTTGACATAAGAAAAGCTTTAGCAGACGAACTACACGATCTTGAGCTATGCTTAGGATTGGGTCTTGTCCATCAC
ATCATTCTCCTAATGATGTGATCCTGTTATCAATGACATCCAATGTCCATGGTCAGGAAACCGTAACCATCTATTGATCA
ACTAGCTAGTCAACTAGAGGCTCACTAGGGATATGTTGTGGTCTATGTATTCACACATGTATTACGATTTCCGGATAACA
CAATTATAGCATGAACAATAGACAATCATCATGAACAAGGAAATATAATAATAACCATTTTATTATTGCCTCTAGGGCAT
ATTTCAACACCGGGGGTGCATCGACATATGATGCAGGCAGTAGGATGGATGGTGGAGGAGCATGTCGTGGCATCGTAGTC
TGATCGGTGTGGTCTTGTGCATGACAGAAACATGCATTGTGGCCGAATCGGAGGAAATCCATGCACCAGAAAGGGTCCCA
ACACTGGCGAGCACGATGACCCTTGGAAAGGCACCGAAAGGAACGGTCTCTCGGCCATGCCGGTGAAGCTGGCCGTGCGA
TGGACGCGGAACCACAGAAGGGCATGAGAGGCGGGGAACAGTGCCCCGTTACAAGGTGCCAGCCATCCAGAAGATCACTA
GAAGGTGTGGGCTCACCGCACACAGGAACAACATGTGTTGCATCCCGA-ACGAAGCCACCACGCTAATCACCCCAACCTG
GATGTGAGGGAGGCACGTCGTCCGATGCAACGAAGCCACGCGGGGAAGCGACACCCGGGAAGCAATGGCCGGCGCTAGAG
GGGCCAATAGCTCGCCGGGAGTAGAGAGCGTTGGGGTTGTGGCAGCAGCATCCAGCTCCCCTTGAATCGGATGTAGGGGA
CAAGCGTTGGTAGGCACTGGAGCGGCCTTCGTCGCGGTCTTTTTGTAGATGGCAGGCACGATCCAGACGACGAACAACGG
CCTAGTCAGCCTTGCCGGAGGCCAAGGCAGTTGCTTCCAGCATGGCGGGGGTGGAAGCCGGGGATGCGACCGACGCTGTC
AAAGATCCCACCATGGGAG-CCTGTTGCGGAGCTCCACAACAACCACTCGTGGATTCCAAGGACAATCCACCGGATCCGA
GCATGTGCACGCTAGCCGTCACCGGATTTAGGCCACAAC-AAGCAATGGCCGTTCCCCCTCGCGGCGACTCTAGAACCAC
CTCCATGTGGCCCTCCACCATACAGCCCCCACGATGCGGTGGGCAAGACATCGAAGGGAGGGGCTGGGACTGGCAAGGCC
AAGGCTGGGGGAAGGGTCGCATCGATGTGGGGCACCACCGTGGATGTCGAGGGGGGTCACTGGAGCTAGGCCAAGACCCA
CACCCAGCACAGACAGATCACGTGTCGCCGCAGCCAACGG------G-----GGCCGGGAGCTTGGGTGAGGATCCATGT
CACAGGGAAGACGGGGGCACGGCAAAGCAGGGCTC--------CGGGGGGAGACGAGGGAGGGCACGGAGGGGGCCCAGG
ATCCGGCAAAGGGTAGTGCAGGGCCGGCCGGAGCAGGGAGATGGAGTGTGCACCGCCGCGCGG-GCTCACCCTTCGCGGG
AGTAGTCACGAGAGGGCATGCCCAGGAAATTATATGTACACAATTCCAATATGCATGATGAGTGATACATGACGAAGAAC
ACTTGTC-AACACCCTGTAGTAGGATCGAAGTATTTGTATAATGTTTGTAATTTGATTGTAATAAATGTTTGTCTGTATT
GTCCACATTAGGTGAATTTTATTGTCATTGTCTGAAGTGCATTCCGCCTGATCAATGTACATGCAAGAACAACCATTTGC
TCTGATTTACCGACTTCTAAACAGTGTATGCATTATGTAACCCAGACTGGTAATGTTTGTTTTGTCGACAAAAGAAATCT
ACTGAAAATTTCATGGCCTGATTGTTATCCATAAGCTACAAACCCTGACAAACTTACAACATTTCATTTATCTTAATCAT
TTGAGGGATGGCATAAATGAAACTATGTTATATAGGAGTGCAAAAACTTCATTTCATTTGACAGATAATAGAATTTCTTC
TTTCAACACGTACATCAACG------------------------------------------------------------
---------------------------------------------AGGGTGTCGATGACTTGAGTGATGAATGGTCATGG
TCGTG--------CTTTTGGAGTAAGAGTTGAACAAGGGGGTGTGCAGTTTGAATGTAAATGACGAGTATGGAGAGACCA
AGGTCATTTGTAATTAGGTGTGGCTAATGCAAGAAGACTTGCGAGCTCTTCATGGTGAGACTCTCGTTGGAGGAGAGGCT
ACAGCCGGGGAGAGAGGGACCAGCAGGGACCGAGAGTTGGCCTCCTACAGC-----------------------------
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-GCGCGCGGGGGAGGGTGGGCTGGTGGCTTAGGCTGGGCTTGTTGGGTGACGACGGCAGCACCTCCAGAGTTGCTCGGGA
GCGACCCTGGAGGCAGCTATGTCTCGTACACAGTCAATCTTTGGTGGATATGTTGTTCATGTATTTCCCGGTTTACTAAC
ATGCAACATGCAACATGAATTGCCTAGGCACCGGGGCAATCTCATGGAAAAAGTTGATCTCACTCCCGTGCGACTCCAGT
GAGTCACACCAGGGCGCTCCAGTCCGGTG
>chr1B_459
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----------------------------------------------------------CCATGCGCCAGAAAGGATCCCG
GCACTCGCGAGCACGATGACCCTTGGAGAGGCACCAGAAGCAACGGCCTCTCGGCCATGCCGGGGGAGCTAGTCGTGCGA
TGGATGCAGAACCATGGGAGGGCATAAGAGGCGGCGAGCAGCACCCCGTTACAAGGTGCCAACCATCCAGAATATGACTA
GCGGGTGTGGGCTCATCGCCCACAGGAACAACAGGTGTTGCAT-CCAA-ATGAAGCCACCACGCCAATCACCCCAACCTG
GACGCGACGGACGCACACCGTCCGATCCAACGGAGCCACGCGGC--AGCGACATCCGGGAAGCAATGGCCGTCACCACAG
GGGCCAACAGCTCTCCGGGAGTAGAGAGCATTGGGGTTGTGGCAGCAGCATCCAACTCCCCTTGAACCGGATGCATGGGA
CCCGCGTTGGTAGACACTGGAGCAGCCTTCGTCGTAGTCTTTTTTTAGATGGCGGGCACGATCCAGACGGCGAAAAACGG
CCTGGTCAGCCTTGCGGGAGGCCAAGGTAGTTGCTGCCAATGCGGCGGCAGTGGAAGCCGGGGATGCGATCGGCGTTGTC
GAATATCCCACCAT-GGAG-CCTGTTGCGGAGCTCCACAACAACCACTCGTGGCTTACAAGGGCAGCCCACCAGATCCTA
GCATGAGCAGGCTAGTAGGCGCCAGACTTAGGCCACAAATAAGAAATGGTCGTCTCCT-TGGCGGCGACTCTAGCACCAC
CTCCATGTGGCCCTCCACCATACAG-CCCCACGATGCAGTGGACAAGACATCGGAGGGAGGGGCTGGGGCTGGCAAGGCC
GAGGCTAGAAGAAGGGTCGCAACGACAGGGGGCACCACCAAGGACGTCGA-GGGGGTCACTTGAGCTAGGGCAAGACCCA
CACCCAGCACAGACAGAGCAAGTGTCGCCGTAGCCGTCGG------GAACATGGCCGGGAGCTTGGGCGAGGATCCATGT
CACAAGGAAGACATGTGCACGACGAAGTGGGCCTC--------CGGGGGTAGACGAGGGAGGGCGTGGAGGGGGGCTAGG
ATCCATCAAAGGGTGTTGTAGGGCCAGCCGGAGTAGGGAGATGGAGCAGGCGCCACCGCGCGCCGCTCACCCTTCGCGAG
AGCAGTCACGAGAGGGCATGCCCGGAAAATTATATGTACACAATTCCAATATGCATGATGAGTGATACCTGACGAAGCAC
ACTTGTCAAACACCCTGTAGTAGGATCGAAGTATTTGCATAATGTTTGTAATTTGATTGTAATAAATGCTTGTCTGTATT
GTCCACATTAGGTGAATTTTATTGTCATCGTATGAAGTGCATTCCGCCGGATCAATGTACATGCGAGAACAACCATTTGC
TCTGATTTACCGAGTTCTAAATAGTGTATGCATTATTTAAACCAGACTGGTGATGTTCGTTTCGTCGCCAAAA-AGATCA
ACTAAAAATATCATGGCCTGATTGTCATCCATAAGCTACAAACCCTGACAAACTCACAACATTTCATTTATCTTGATCAT
TTGAGGAATGGCATAAATGAACATTTGTTATATAAGAGTGCAAAAACCTCATTTCAGTTGACAAATAGTAGAATTTCTTC
TTTCAACAATTACATCAACG------------------------------------------------------------
---------------------------------------------TGCGTGTC---------------------------
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>chr1D_624
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---------------------------------------------------------------CATCCAGAAGATCACTA
GCAGTGCC-------CCTCACACACGAACAACAGGGGTTGCAT-CCCGGACAAAGCTACCACACCAGTCACCCCAACCTC
GACGCGAGGGAGGCACGTCGTCCGATGCAACGGAGCCACACGAC--AGCGGCATCCGAGAAGCAATGGCCGGCACCAGAA
GGGCCAACAGCTCGCCGGGAGTAGAGAGCGTTGGGGTTGTGGCAGCAGCATCCTGCTCCCCTTGAACCGGATGCAGGGGA
CCCACGTTGGTAGACACTAGAGCGACCTTTGTCGCGGTCTTTTTGTAGATGGCAGGCACGATCCAGACGGCGAACAATGG
C-TGGTCAGCATTGTGGGAGGCCAAGGCATTTATTGCCAGCGTGGCGGCGGCGGAAG-CGGGGATGCGACCGGCGCTATC
AAAGATCCCACCAT-GGGATCCTATTGAAGAGTTCCACAACAACCACTCGTAGCTTTCTGGGGCAGCCCACCGGATCCGA
GCATCAGCAGGCTAGCCGACACCGGATTTAAGCCACAGC-AAGCAATGGTTGTCTCCCCTGGCGGCGACTCCAGCACCGC
CTCCATGTGGCCCTCCACCATACAA-CCCCACGATGCGGTGGACACGACATCGGAGAGAGGGGCTGGGGCTGGCAAGGCC
GAGGTTGGGGGAAGGGTCGCAGCGACCGGGGAGG-CACCATGGACGTCGA-GGGGGTCACTGGAGCTAGGGAAAGACCCA
CACCCAGCACCGACAGAGCACGTGTCTCCGCAACCATCGGGGACACG-----GGCCAGGAGCTTGGGTGAGGATCCACGT
CACTGGGAAGACGGGGGCACGACGAAGCAGGGCTCCGGGGAGGCGGGGGGAGACGAGGGAAGGCACGGAGGGGCCCAGGA
T----------------------CCGGCCGGAGCAGGGAGATGGAGCGGGCACCGCTGCGCGC-GCTCACCCTTCGTGGG
AGTAGTCACGAGGGTGCATGCCCGGAAATTTATAT-TACACAATTACAATATGCATGATGAGTGATACATGACGAAGCAC
ACTTGTC-AACACCCTGTAGTAGGATCGAAGTATTTATATAATGTTTGTAATTTGATTGTAATAAATGTTTGTCTGTATT
GTCCACATTAGGTGAATTTTATTGTCATCGTCTGAAGTGCATTCTGCCTGATCAATGTACATGCGAGAACAACCATTTGC
TCTGATTTACCGAGTTCTAAACAGTGTATGCATTATGTAAACCAGACTGGTGATGTTGGTTTCGTCACCAAAA-AAATCA
ACTAAAAAATTCATGGGCTGATTGTTATCCATAAGCTACAAACCCTGACAAACTTACAACATTTCATTTATCTTGATCGT
CTGAGGAATGGCATAAATGAAACTCTATTATATAGGAGTGCAAAAACCTCATTTCGTTTGAGGGATAGTAGATTTTCTTC
TTTCAACACGTACATCAACGAGGGTTTCAGGAATGGCATAAATGAAACTCTATTATATAGGAGTGCAAAAACCTCATTTC
GTTTGAGGGATAGTAGATTTTCTTCTTTCAACACGTACATCAATGAGGGTGTCGATGACTTGAGTGACGAATGGTCATGT
GCTAGAGGTCGCACTTTTGGGGTAAGAGCTGAACAAGGGTGTGTGCAGTTTCAATGTAAATGACGAGCATGGAGAGACCA
AGGTCCTTTGAAATTATGTGTGGCTGATGCAAGAAGACTCGGGAGCTCTCCATGGTGAGACTCTCGTTGGAGGAGAGGCT
ACAACCGGGGAGAGAGGGACCAGCAAGGACCGAGAGTTGGCCTCCTACAGCGCGCACGGGGGAGGGTGAGTTGATGGCTT
AGGCTGGGCTTGTTGGGTGGCGGCGGCAACGCCTCCAGAGTTGCTCGGGAGCGACCTGGGAGGCAGCTAGGTCTCGTACA
AATTCAATCTTTGTTGGATATGTTGATCATGTATTTTTCTGGTTTACTAACATGCAACATGCAACACAAATGGCCTACAC
AGCGCACGGGGGAGGGTGGGTTGATGGCTTAGGCTGGGCATGTTGGGTGGCGGCGGCAGCGCCTCCAGAGTTGCTCGGGA
GCGACCCGGGAGGCAGCTAGGTCTCGTACAAATTCAATATTTGTTGGATATGTTGTTCATGTATTTCCTGGTTTACTAA-
------CATGCAACACGAATGGCCTAGGCACCGGGGCGATCTCTCGAAAAAAGTTGATCTCACTCCCGTGCGACTTCAGT
GAGTCGCACCATGGCGCTCGAGTCC----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------S----S
S----S---------------------S-------SS---S-----S----------------S-S----S-S-------
----S--S------SS-S-------S--------S--S---SS------------------S------------------
-S-------------------------------S---------S--S-----------------S---------------
--S-S---------------------------S----------SSS-------S-------------------S-S----
-------S----------------------------------------------------------S------S------
-SS----------S-------------------------------------------------------S----------
---S-----------S-------------------S-----S------S-----------------------S-------
--------------S--------------------------------------S--S-----S--SS-------------
-----S---S--------S------------------------------S---SS-----S-------------S-----
-------------------------S----------------S----------S--------------S-----------
S--------------------S---SSS-----------S----S-----S-------------------S---------
-----------------S------------------S-------------------------------------------
---------------------S-S----------------------------------------------------S---
----SS--------SS--S---------------------------S-S-------------S-----------------
-----------------------S-S---------------------------------------------------S--
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----------------------------S-----------------------------------S---------------
-------------S--------------------------S----------S-----S----S----S-----S-----S
---S----------------------------------------------------------------------S-----
------S-----------------S----------------------S-------------------S------------
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-------------------------------------------------------------------S-----------S
S-SS----------------S-------S----------S-----------S---------------S------------
-----S----S-----S--------S-------------S-S-------S------------------------------
---S---------------------S------------------------------------------------------
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-----S--------------S--S---------------S---------S--S-------S-------------------
-------S-----------S----------S-S-----S----S------------------------S----------S
SSSSSS---------S----S----------------S-----SS-S----------------------------S----
-----S-----S-------S-----SSSS
>forward_143
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-------------------------------------------TGTCCATGGTCAGGAAACCG-----------------
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>reverse_1517
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----------------------------------------------------------------------------CAGG
ATCCGGCAAAGGGTAG----------------------------------------------------------------
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>forward_1175
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-----------------------------------ACAACAAGCAATGGCCGTTC-------------------------
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>reverse_2360
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---------------------------------------TGCGAGCTCTTCATGGTGAG---------------------
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