Multiple sequence alignment - TraesCS1A01G313600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G313600 chr1A 100.000 2885 0 0 1 2885 505339974 505337090 0.000000e+00 5328.0
1 TraesCS1A01G313600 chr1D 93.657 2901 131 23 1 2885 409350025 409347162 0.000000e+00 4289.0
2 TraesCS1A01G313600 chr1D 73.545 189 40 6 2398 2586 121307513 121307335 2.400000e-06 63.9
3 TraesCS1A01G313600 chr1B 91.289 2916 175 42 4 2885 551118167 551115297 0.000000e+00 3904.0
4 TraesCS1A01G313600 chr5A 83.529 85 11 2 2428 2512 679878228 679878147 3.080000e-10 76.8
5 TraesCS1A01G313600 chr5B 75.439 171 30 9 2428 2597 247675326 247675167 3.990000e-09 73.1
6 TraesCS1A01G313600 chr6B 97.436 39 1 0 2559 2597 439726939 439726977 1.860000e-07 67.6
7 TraesCS1A01G313600 chr2B 91.111 45 2 2 2411 2455 281871535 281871577 3.100000e-05 60.2
8 TraesCS1A01G313600 chr2B 94.595 37 2 0 2427 2463 470521137 470521173 1.120000e-04 58.4
9 TraesCS1A01G313600 chr3B 79.070 86 14 2 2427 2512 710921026 710921107 4.020000e-04 56.5
10 TraesCS1A01G313600 chr3A 100.000 29 0 0 2427 2455 147794397 147794369 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G313600 chr1A 505337090 505339974 2884 True 5328 5328 100.000 1 2885 1 chr1A.!!$R1 2884
1 TraesCS1A01G313600 chr1D 409347162 409350025 2863 True 4289 4289 93.657 1 2885 1 chr1D.!!$R2 2884
2 TraesCS1A01G313600 chr1B 551115297 551118167 2870 True 3904 3904 91.289 4 2885 1 chr1B.!!$R1 2881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 94 0.038343 TTCGTAGAAAACCGACCGGG 60.038 55.0 13.43 0.0 45.9 5.73 F
1545 1555 0.035056 CCCCATCAGACACCCAAGAC 60.035 60.0 0.00 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1741 0.810016 GAACGAACTCGGTAGCCTCT 59.190 55.0 3.88 0.0 40.66 3.69 R
2839 2889 0.816018 TGCCACTTTACCACACCACG 60.816 55.0 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.558321 CCTTTCCAACTTCCGTGGTATCA 60.558 47.826 0.00 0.00 0.00 2.15
75 77 4.871513 TGGATCCGACTATTCTCATTTCG 58.128 43.478 7.39 0.00 0.00 3.46
76 78 4.341235 TGGATCCGACTATTCTCATTTCGT 59.659 41.667 7.39 0.00 0.00 3.85
81 83 7.092137 TCCGACTATTCTCATTTCGTAGAAA 57.908 36.000 0.00 0.00 45.90 2.52
87 90 5.834239 TTCTCATTTCGTAGAAAACCGAC 57.166 39.130 0.00 0.00 45.90 4.79
91 94 0.038343 TTCGTAGAAAACCGACCGGG 60.038 55.000 13.43 0.00 45.90 5.73
139 142 4.789807 ACATCAGGGATCTTGAATCCTTG 58.210 43.478 9.29 9.29 43.99 3.61
156 159 3.137176 TCCTTGGTCTTGGATCATGGATC 59.863 47.826 10.18 0.00 40.51 3.36
171 174 1.664649 GATCCGATCCGCGCATCAA 60.665 57.895 11.18 0.00 39.11 2.57
173 176 2.369257 ATCCGATCCGCGCATCAACT 62.369 55.000 11.18 0.00 39.11 3.16
251 254 6.440010 CCTAGTCATGGATCATGGATCTAACT 59.560 42.308 7.88 4.69 41.66 2.24
274 277 8.749026 ACTTTCATGATTCTAAGCATCATTCT 57.251 30.769 0.00 0.00 39.00 2.40
305 308 2.026641 CATGGGCATTCCGACATTTCT 58.973 47.619 0.00 0.00 38.76 2.52
306 309 2.214376 TGGGCATTCCGACATTTCTT 57.786 45.000 0.00 0.00 38.76 2.52
307 310 1.818060 TGGGCATTCCGACATTTCTTG 59.182 47.619 0.00 0.00 38.76 3.02
312 315 3.419915 CATTCCGACATTTCTTGCTTCG 58.580 45.455 0.00 0.00 0.00 3.79
366 369 4.188247 TCCGACTTTCATGATTTCGAGT 57.812 40.909 17.93 8.60 0.00 4.18
387 390 1.077501 CATCGCTCCCACCCAACAT 60.078 57.895 0.00 0.00 0.00 2.71
391 394 1.228862 GCTCCCACCCAACATGGTT 60.229 57.895 0.00 0.00 36.12 3.67
407 410 0.108019 GGTTTCGACCACCAACTCCT 59.892 55.000 7.93 0.00 34.04 3.69
430 433 1.562475 GGTATCAAACCCCTGGTGCTA 59.438 52.381 0.00 0.00 43.16 3.49
880 887 5.480422 TGTACTCTTGTCCTGCTTCATCTTA 59.520 40.000 0.00 0.00 0.00 2.10
935 942 1.842562 CTCCCATGGTCTTGACATCCT 59.157 52.381 11.73 0.00 0.00 3.24
936 943 2.240667 CTCCCATGGTCTTGACATCCTT 59.759 50.000 11.73 0.00 0.00 3.36
939 946 3.012518 CCATGGTCTTGACATCCTTGAC 58.987 50.000 2.57 0.00 0.00 3.18
940 947 3.559811 CCATGGTCTTGACATCCTTGACA 60.560 47.826 2.57 0.00 0.00 3.58
941 948 4.267536 CATGGTCTTGACATCCTTGACAT 58.732 43.478 3.08 0.00 0.00 3.06
943 950 3.274288 GGTCTTGACATCCTTGACATCC 58.726 50.000 3.08 0.00 0.00 3.51
944 951 3.274288 GTCTTGACATCCTTGACATCCC 58.726 50.000 0.00 0.00 0.00 3.85
945 952 2.912295 TCTTGACATCCTTGACATCCCA 59.088 45.455 0.00 0.00 0.00 4.37
946 953 3.054875 TCTTGACATCCTTGACATCCCAG 60.055 47.826 0.00 0.00 0.00 4.45
947 954 2.550175 TGACATCCTTGACATCCCAGA 58.450 47.619 0.00 0.00 0.00 3.86
948 955 2.502947 TGACATCCTTGACATCCCAGAG 59.497 50.000 0.00 0.00 0.00 3.35
949 956 1.211457 ACATCCTTGACATCCCAGAGC 59.789 52.381 0.00 0.00 0.00 4.09
950 957 1.211212 CATCCTTGACATCCCAGAGCA 59.789 52.381 0.00 0.00 0.00 4.26
951 958 0.615331 TCCTTGACATCCCAGAGCAC 59.385 55.000 0.00 0.00 0.00 4.40
979 989 2.088423 AGTCAAGAGGAGTCGTAGCTG 58.912 52.381 0.00 0.00 0.00 4.24
1426 1436 4.576330 AGCACAGAAGCTAACCCTAATT 57.424 40.909 0.00 0.00 44.50 1.40
1476 1486 2.040213 GATCGTTGGTGGATGCTGCG 62.040 60.000 0.00 0.00 0.00 5.18
1545 1555 0.035056 CCCCATCAGACACCCAAGAC 60.035 60.000 0.00 0.00 0.00 3.01
1665 1675 3.064820 GCCGAACAAGAAGTGTCTTTGAA 59.935 43.478 0.00 0.00 41.55 2.69
1688 1701 9.091784 TGAAGATGATAAAGAAGACGATGAAAG 57.908 33.333 0.00 0.00 0.00 2.62
1728 1741 3.900601 GCAAGAGGAGGAGGATTGATCTA 59.099 47.826 0.00 0.00 0.00 1.98
1749 1762 1.201880 GAGGCTACCGAGTTCGTTCTT 59.798 52.381 0.48 0.00 37.74 2.52
1751 1764 2.821969 AGGCTACCGAGTTCGTTCTTTA 59.178 45.455 0.48 0.00 37.74 1.85
1952 1969 9.672086 TGTTTATTTCTACAACATTGTACAAGC 57.328 29.630 14.65 0.00 42.35 4.01
1974 1991 8.575454 CAAGCGCTTGTATTTAGTTATTTGTTC 58.425 33.333 36.23 0.00 35.92 3.18
2002 2019 3.390135 CTCTGTAGAAACGTTGGCTTGA 58.610 45.455 0.00 2.24 0.00 3.02
2003 2020 3.390135 TCTGTAGAAACGTTGGCTTGAG 58.610 45.455 0.00 2.81 0.00 3.02
2004 2021 1.871039 TGTAGAAACGTTGGCTTGAGC 59.129 47.619 0.00 0.00 41.14 4.26
2006 2023 2.543777 AGAAACGTTGGCTTGAGCTA 57.456 45.000 0.00 0.00 41.70 3.32
2009 2026 3.821033 AGAAACGTTGGCTTGAGCTATTT 59.179 39.130 0.00 0.00 41.70 1.40
2010 2027 5.001232 AGAAACGTTGGCTTGAGCTATTTA 58.999 37.500 0.00 0.00 41.70 1.40
2011 2028 4.680171 AACGTTGGCTTGAGCTATTTAC 57.320 40.909 0.00 0.00 41.70 2.01
2012 2029 3.670625 ACGTTGGCTTGAGCTATTTACA 58.329 40.909 2.66 0.00 41.70 2.41
2013 2030 4.261801 ACGTTGGCTTGAGCTATTTACAT 58.738 39.130 2.66 0.00 41.70 2.29
2134 2152 8.906867 ACTGATTTGTCATATTTTGTATCAGGG 58.093 33.333 0.00 0.00 36.91 4.45
2239 2257 4.768448 TCACCTAGTTGTTTCATCGGACTA 59.232 41.667 0.00 0.00 0.00 2.59
2241 2259 4.081807 ACCTAGTTGTTTCATCGGACTACC 60.082 45.833 0.00 0.00 0.00 3.18
2281 2299 2.720891 GCAAAAACGTCGCACTACTAGC 60.721 50.000 0.00 0.00 0.00 3.42
2386 2404 1.140652 TGGCATGGATCATCGTTGCTA 59.859 47.619 9.56 2.22 0.00 3.49
2421 2446 9.516314 CCTTTCTTCTTTGTATTTTTCTTTCGT 57.484 29.630 0.00 0.00 0.00 3.85
2424 2449 9.716507 TTCTTCTTTGTATTTTTCTTTCGTCTG 57.283 29.630 0.00 0.00 0.00 3.51
2425 2450 8.889717 TCTTCTTTGTATTTTTCTTTCGTCTGT 58.110 29.630 0.00 0.00 0.00 3.41
2462 2487 6.197096 GTCTTGTATGATTTTGCTTTATGCCG 59.803 38.462 0.00 0.00 42.00 5.69
2467 2492 5.826601 TGATTTTGCTTTATGCCGACATA 57.173 34.783 0.00 0.00 42.00 2.29
2496 2523 0.727970 GTGTGTGTGCGTTGGTGTTA 59.272 50.000 0.00 0.00 0.00 2.41
2523 2553 1.756538 TGCATCCTAATCGTGCAGAGA 59.243 47.619 0.00 0.00 43.30 3.10
2532 2562 0.950555 TCGTGCAGAGATTGTGTGCC 60.951 55.000 0.31 0.00 45.06 5.01
2551 2581 8.028354 TGTGTGCCTACTTGATCATTTTATTTG 58.972 33.333 0.00 0.00 0.00 2.32
2574 2613 7.806680 TGTATCCCCTTGATGCTATATTACA 57.193 36.000 0.00 0.00 37.04 2.41
2666 2706 2.627515 TACTCCCTCATGCATGCTTC 57.372 50.000 22.25 0.00 0.00 3.86
2668 2708 1.214673 ACTCCCTCATGCATGCTTCAT 59.785 47.619 22.25 0.44 0.00 2.57
2672 2712 5.221986 ACTCCCTCATGCATGCTTCATAATA 60.222 40.000 22.25 0.10 0.00 0.98
2673 2713 5.633117 TCCCTCATGCATGCTTCATAATAA 58.367 37.500 22.25 0.00 0.00 1.40
2674 2714 6.250711 TCCCTCATGCATGCTTCATAATAAT 58.749 36.000 22.25 0.00 0.00 1.28
2675 2715 7.404481 TCCCTCATGCATGCTTCATAATAATA 58.596 34.615 22.25 0.00 0.00 0.98
2677 2717 8.188799 CCCTCATGCATGCTTCATAATAATAAG 58.811 37.037 22.25 8.38 0.00 1.73
2678 2718 8.737175 CCTCATGCATGCTTCATAATAATAAGT 58.263 33.333 22.25 0.00 0.00 2.24
2679 2719 9.770503 CTCATGCATGCTTCATAATAATAAGTC 57.229 33.333 22.25 0.00 0.00 3.01
2802 2852 9.047871 GTGTAAAACGAATTAATCTGTAAGCAC 57.952 33.333 0.00 0.00 0.00 4.40
2832 2882 7.328737 ACACTGGCGTCTTTATCTTAACTAAT 58.671 34.615 0.00 0.00 0.00 1.73
2838 2888 7.411588 GGCGTCTTTATCTTAACTAATATGCGG 60.412 40.741 0.00 0.00 0.00 5.69
2839 2889 7.445836 CGTCTTTATCTTAACTAATATGCGGC 58.554 38.462 0.00 0.00 0.00 6.53
2840 2890 7.445836 GTCTTTATCTTAACTAATATGCGGCG 58.554 38.462 0.51 0.51 0.00 6.46
2841 2891 7.115947 GTCTTTATCTTAACTAATATGCGGCGT 59.884 37.037 9.37 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.360393 TGAGCCAAGACCAGGGGTTT 61.360 55.000 0.00 0.00 35.25 3.27
75 77 1.742880 GGCCCGGTCGGTTTTCTAC 60.743 63.158 8.67 0.00 0.00 2.59
76 78 1.766625 TTGGCCCGGTCGGTTTTCTA 61.767 55.000 0.00 0.00 0.00 2.10
81 83 3.881104 AAGTTGGCCCGGTCGGTT 61.881 61.111 0.00 0.00 0.00 4.44
87 90 2.035626 ATGACCAAGTTGGCCCGG 59.964 61.111 22.25 0.00 42.67 5.73
156 159 2.586079 AGTTGATGCGCGGATCGG 60.586 61.111 31.08 0.00 38.94 4.18
157 160 2.082437 GACAGTTGATGCGCGGATCG 62.082 60.000 31.08 20.75 42.12 3.69
251 254 8.627403 GGAAGAATGATGCTTAGAATCATGAAA 58.373 33.333 15.84 0.00 42.58 2.69
263 266 0.753111 GGCCGGGAAGAATGATGCTT 60.753 55.000 2.18 0.00 0.00 3.91
295 298 1.394917 CCTCGAAGCAAGAAATGTCGG 59.605 52.381 0.00 0.00 30.74 4.79
305 308 1.787012 GTTCGTTACCCTCGAAGCAA 58.213 50.000 1.09 0.00 45.58 3.91
306 309 3.502237 GTTCGTTACCCTCGAAGCA 57.498 52.632 1.09 0.00 45.58 3.91
349 352 6.537566 CGATGAAACTCGAAATCATGAAAGT 58.462 36.000 0.00 0.00 41.12 2.66
366 369 0.608035 GTTGGGTGGGAGCGATGAAA 60.608 55.000 0.00 0.00 0.00 2.69
391 394 1.752198 CCAGGAGTTGGTGGTCGAA 59.248 57.895 0.00 0.00 42.41 3.71
416 419 0.693049 CAGTCTAGCACCAGGGGTTT 59.307 55.000 0.00 0.00 31.02 3.27
880 887 2.603776 GGTGGGTGGTCGGAGTCT 60.604 66.667 0.00 0.00 0.00 3.24
935 942 1.421268 ACAAGTGCTCTGGGATGTCAA 59.579 47.619 0.00 0.00 0.00 3.18
936 943 1.059098 ACAAGTGCTCTGGGATGTCA 58.941 50.000 0.00 0.00 0.00 3.58
939 946 3.449018 ACTACTACAAGTGCTCTGGGATG 59.551 47.826 0.00 0.00 0.00 3.51
940 947 3.702045 GACTACTACAAGTGCTCTGGGAT 59.298 47.826 0.00 0.00 0.00 3.85
941 948 3.090037 GACTACTACAAGTGCTCTGGGA 58.910 50.000 0.00 0.00 0.00 4.37
943 950 4.218635 TCTTGACTACTACAAGTGCTCTGG 59.781 45.833 0.00 0.00 43.30 3.86
944 951 5.378292 TCTTGACTACTACAAGTGCTCTG 57.622 43.478 0.00 0.00 43.30 3.35
945 952 4.461081 CCTCTTGACTACTACAAGTGCTCT 59.539 45.833 0.00 0.00 43.30 4.09
946 953 4.459685 TCCTCTTGACTACTACAAGTGCTC 59.540 45.833 0.00 0.00 43.30 4.26
947 954 4.408276 TCCTCTTGACTACTACAAGTGCT 58.592 43.478 0.00 0.00 43.30 4.40
948 955 4.218852 ACTCCTCTTGACTACTACAAGTGC 59.781 45.833 0.00 0.00 43.30 4.40
949 956 5.391097 CGACTCCTCTTGACTACTACAAGTG 60.391 48.000 0.00 0.00 43.30 3.16
950 957 4.696402 CGACTCCTCTTGACTACTACAAGT 59.304 45.833 0.00 0.00 43.30 3.16
951 958 4.696402 ACGACTCCTCTTGACTACTACAAG 59.304 45.833 0.00 0.00 43.92 3.16
979 989 1.538075 GAGATGACGCTCCTAGCTACC 59.462 57.143 0.00 0.00 39.60 3.18
1107 1117 1.033746 CGTAGTAGGTGGCCGAGGAA 61.034 60.000 0.00 0.00 0.00 3.36
1426 1436 2.798283 CCGAAAGAAAACTGCGTACTGA 59.202 45.455 0.00 0.00 0.00 3.41
1437 1447 2.910319 TCTCCCTGGATCCGAAAGAAAA 59.090 45.455 7.39 0.00 0.00 2.29
1476 1486 1.273327 CCCCAAATGGTTCTTGCAGTC 59.727 52.381 0.00 0.00 0.00 3.51
1545 1555 2.867109 ACACCTCTTTCTCACCATGG 57.133 50.000 11.19 11.19 0.00 3.66
1665 1675 7.786030 TCCTTTCATCGTCTTCTTTATCATCT 58.214 34.615 0.00 0.00 0.00 2.90
1688 1701 4.811024 TCTTGCGACATAGATGAACAATCC 59.189 41.667 0.00 0.00 35.72 3.01
1728 1741 0.810016 GAACGAACTCGGTAGCCTCT 59.190 55.000 3.88 0.00 40.66 3.69
1749 1762 6.462207 GCAGATGCTCACTAGAGGAAGAATAA 60.462 42.308 0.00 0.00 45.75 1.40
1751 1764 4.202243 GCAGATGCTCACTAGAGGAAGAAT 60.202 45.833 0.00 0.00 45.75 2.40
1971 1988 4.745620 ACGTTTCTACAGAGCAAGAAGAAC 59.254 41.667 0.00 0.00 33.49 3.01
1974 1991 4.084328 CCAACGTTTCTACAGAGCAAGAAG 60.084 45.833 0.00 0.00 33.49 2.85
1983 2000 2.096218 GCTCAAGCCAACGTTTCTACAG 60.096 50.000 0.00 0.21 34.31 2.74
2023 2041 9.509855 CCAAATCAATTAAATCGACCGAAATAA 57.490 29.630 0.00 0.08 0.00 1.40
2129 2147 3.117322 TGATTTTGAGTTCAACCCCCTGA 60.117 43.478 0.00 0.00 35.28 3.86
2134 2152 4.279420 AGCTCTTGATTTTGAGTTCAACCC 59.721 41.667 0.00 0.00 35.28 4.11
2239 2257 6.100404 TGCAAAATGCTTGAAGATAAAGGT 57.900 33.333 0.00 0.00 45.31 3.50
2241 2259 9.161684 GTTTTTGCAAAATGCTTGAAGATAAAG 57.838 29.630 24.39 0.00 45.31 1.85
2395 2413 9.516314 ACGAAAGAAAAATACAAAGAAGAAAGG 57.484 29.630 0.00 0.00 0.00 3.11
2398 2416 9.716507 CAGACGAAAGAAAAATACAAAGAAGAA 57.283 29.630 0.00 0.00 0.00 2.52
2399 2417 8.889717 ACAGACGAAAGAAAAATACAAAGAAGA 58.110 29.630 0.00 0.00 0.00 2.87
2400 2418 8.947940 CACAGACGAAAGAAAAATACAAAGAAG 58.052 33.333 0.00 0.00 0.00 2.85
2421 2446 3.076621 CAAGACCAAAGCTATGCACAGA 58.923 45.455 0.00 0.00 0.00 3.41
2424 2449 4.635765 TCATACAAGACCAAAGCTATGCAC 59.364 41.667 0.00 0.00 0.00 4.57
2425 2450 4.842574 TCATACAAGACCAAAGCTATGCA 58.157 39.130 0.00 0.00 0.00 3.96
2462 2487 5.451908 CACACACACACAAAGGATTATGTC 58.548 41.667 0.00 0.00 0.00 3.06
2467 2492 1.065401 CGCACACACACACAAAGGATT 59.935 47.619 0.00 0.00 0.00 3.01
2496 2523 3.181497 GCACGATTAGGATGCACACATTT 60.181 43.478 0.00 0.00 39.23 2.32
2523 2553 6.594788 AAAATGATCAAGTAGGCACACAAT 57.405 33.333 0.00 0.00 0.00 2.71
2551 2581 8.322091 ACTTGTAATATAGCATCAAGGGGATAC 58.678 37.037 0.00 0.00 39.49 2.24
2617 2656 6.096673 TGTGAGCTTAGTTCAACAGTCATA 57.903 37.500 0.00 0.00 0.00 2.15
2722 2762 8.647796 TGGAATTCCATTAGTACACTATAGGTG 58.352 37.037 23.63 3.02 45.38 4.00
2754 2798 7.041721 ACACGACAGATTCTCAATATTTGCTA 58.958 34.615 0.00 0.00 0.00 3.49
2756 2800 6.111768 ACACGACAGATTCTCAATATTTGC 57.888 37.500 0.00 0.00 0.00 3.68
2802 2852 4.433615 AGATAAAGACGCCAGTGTACATG 58.566 43.478 0.00 0.00 0.00 3.21
2832 2882 2.168666 TTACCACACCACGCCGCATA 62.169 55.000 0.00 0.00 0.00 3.14
2838 2888 1.946267 CCACTTTACCACACCACGC 59.054 57.895 0.00 0.00 0.00 5.34
2839 2889 0.816018 TGCCACTTTACCACACCACG 60.816 55.000 0.00 0.00 0.00 4.94
2840 2890 1.394618 TTGCCACTTTACCACACCAC 58.605 50.000 0.00 0.00 0.00 4.16
2841 2891 2.028130 CTTTGCCACTTTACCACACCA 58.972 47.619 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.