>input_sequence_66252
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-------------------------------------------------ATGGATCCAGCAAAGTACTGGATGATAACCA
GGAGAAAGCAGGGTGATCAGAAGGCGCCTGCCGTCTTCAGCACGCCGCACGTCACCGTCGGCAGCGGCGGCGGCACTTCC
TCGGCCACCTACTACGAGTCGTGGGAGGAGCGCGCGTTCGCCCAGGACTCCGCGGGGAGCCTCGGGGGCTGCATCTGGCC
GCCGAGATCCTACTCGTGCAGCTTCTGCGGCCGAGAGTTCCGGTCTGCGCAGGCCCTCGGTGGGCACATGAACGTCCACC
GGAGGGACCGGGCCAGGCTCAAGCTCTCCGGGATGGTGGAGGAGGGGGGCGGCGTCGACGTCCATGGCATGCCTCTGCAC
CAAGGCTACATGATCCAGCCGCTGCCGTGCCCTCCTCCAAGACCTAGTGCTCCAAGCACAGAAGCTAACCCTAATTCAGT
ACGCAGTTTTCTTTCGGATCCAGGGAGATCGTTGGTGGATGCTGCGACTGCAAGAACCATTTGGGGCAAACAAGTCTTGG
CCGCCCCTCTCGTGTCCCCATCAGACACCCAAGACCATGGTGAGAAAGAGGTGTTTCTTCACGATGCCGAGGTACGTTCA
GAGCAAGAACTGCGTGTTGGGGGTGGCGAGCTGAAGCTGGGTCTTTTGGGCCGCCGAACAAGAAGTGTCTTTGAA---GA
TGATAAAGAAGACGATGAAAGGATTGTTCATCTATGTCGCAAGAGGAGGAGGATTGATCTAGAGGCTACCGAGTTCGTTC
TTTATTCTTCCTCTAGTGAGCATCTGCAACGTGATGATCCTCGTGATGATGGCGACGATGATAATCGTCGTGTGAAGGTA
CTTAAGCTTTGTCCTAGCACCCCGGCCGAGGAACTAGATCTTGAGCTTAGGCTTTGA-----------------------
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>chr1A_1_TraesCS1A01G313600
TGTCATTTCGACCTTTCCAACTTCCGTGGTATCAAACCCCTGGTCTTGGCTCATGGATCCGACTAT-TCTCATTTCGTAG
AAAA-CCGACCGGGCCAACTTGGTCATCCAACCGAACCAACATCAGGGATCTTGAATCCTTGGTCTTGGATCATGGATCC
GATCCGCGCATCAACTGTCCCAGCCAACATGGGCATTTCGACCTTTCCGACTTCCGGAGTATCAAATCCCTAGTCATGGA
TCATGGATCTAACTTTCATGATTCTAAGCATCATTCTTCCCGGCCAACATGGGCATTCCGACATTTCTTGCTTCGAGGGT
AACGAACCCCTAGTCTTGGATCATGGATCCGACTTTCATGATTTCGAGTTTCATCGCTCCCACCCAACATGGTTTCGACC
ACCAACTCCTGGGGTATCAAACCCCTGGTGCTAGACTGGATTAAGCTGTTTATAACAGTA--TGTGGCAGTGACCGTAAT
TAGCGGAAATAAGCTTTGCTTGCAATTATTGACACCCAGTCAAGTATCGCCATCAAAGACTAGATAGAGACGGATACCAC
CCCTTTCGTTGCCGTGCAGCACTCAGGTTAAATATCGTTAAACCTTGTAACTAGTTGCACTAGCTACCAAATTAACACTG
ATCTGGGATTTGAATAAGATGCCACTTTTCGTTTCAGAAACAGTCACACTT--CCTGTGACAAACTGGATGTGTGAAGAA
AAGATAGGGCCAGGACCCACTAGGGTACTACAGACAACGAAAGGTGAGTCAGGTTGCTTGCATCCGTAAAGGCAAGCAAA
TCAAGCAACCCTTGCAGCTTCTCCCTTCCCTCCGGCTTCCTCTCACACCTGTAGATTTGATATGTACTCTTGTCCTGCTT
CATCTTAGACTCCGACCACCCACCTCTCCGCCATCAAGCACCTCCCATGGTCTTGACATCCTTGACATCCCAGAGCACTT
---GTAGTAGTCAAGAGGAGTCGTAGCTGGTAGCTAGGAGCGTCATCTCATGGATCCAGCAAAGTACTGGATGATAACCA
GGAGAAAGCAGGGTGATCAGAAGGCGCCTGCCGTCTTCAGCACGCCGCACGTCACCGTCGGCAGCGGCGGCGGCACTTCC
TCGGCCACCTACTACGAGTCGTGGGAGGAGCGCGCGTTCGCCCAGGACTCCGCGGGGAGCCTCGGGGGCTGCATCTGGCC
GCCGAGATCCTACTCGTGCAGCTTCTGCGGCCGAGAGTTCCGGTCTGCGCAGGCCCTCGGTGGGCACATGAACGTCCACC
GGAGGGACCGGGCCAGGCTCAAGCTCTCCGGGATGGTGGAGGAGGGGGGCGGCGTCGACGTCCATGGCATGCCTCTGCAC
CAAGGCTACATGATCCAGCCGCTGCCGTGCCCTCCTCCAAGACCTAGTGCTCCAAGCACAGAAGCTAACCCTAATTCAGT
ACGCAGTTTTCTTTCGGATCCAGGGAGATCGTTGGTGGATGCTGCGACTGCAAGAACCATTTGGGGCAAACAAGTCTTGG
CCGCCCCTCTCGTGTCCCCATCAGACACCCAAGACCATGGTGAGAAAGAGGTGTTTCTTCACGATGCCGAGGTACGTTCA
GAGCAAGAACTGCGTGTTGGGGGTGGCGAGCTGAAGCTGGGTCTTTTGGGCCGCCGAACAAGAAGTGTCTTTGAA---GA
TGATAAAGAAGACGATGAAAGGATTGTTCATCTATGTCGCAAGAGGAGGAGGATTGATCTAGAGGCTACCGAGTTCGTTC
TTTATTCTTCCTCTAGTGAGCATCTGCAACGTGATGATCCTCGTGATGATGGCGACGATGATAATCGTCGTGTGAAGGTA
CTTAAGCTTTGTCCTAGCACCCCGGCCGAGGAACTAGATCTTGAGCTTAGGCTTTGAGACTATCCAAAACTATACTAGAG
CCCG----TGATTCCATCTGCCTGTTTATTTCTACAACATTGTACAAGCGCTTGTATTTAGTTATTTGTTCTTCTTGCTC
TGTAGAAACGTTGGCTTGAGCTATTTACATTTTTT-AATCTTATTTCGGTCGATTTAATTGATTTGGGCAAGTCAATTCT
CTTTGCAAATGTCTAAAGGTGTACTCTAGAGGAAGCATCATCTCAACTGATTTGTCATATTTTGTATCAGGGGGTTGAAC
TCAAAATCAAGAGCTTACTTGCATACATGTGTGAAATTCAATGTCATTTTTCCTGTGTATGGCTTATATTTGTTCACCTA
GTTGTTTCATCGGACTACCTTTATCTTCAAGCATTTTGCAAAAACGTCGCACTACTAGCGGTTGCACTTGCATGCAATCC
CCTGCGTAAATGGCAGAAATGTTTCTGACTCTTGTCATCATCTTCGTTGGGTCAGCAGCTGCTTGGCATGGATCATCGTT
GCTATTTTTTTTCCTTTCTTCTTTGTAT-------TTTTCTTTCGTCTGTGCATAGCTTTGGTCTTGTATGATTTTGCTT
TATGCCGACATAATCCTTTGTGTGTGTGTGCGT--TGGTGTTAAATGTGTGCATCC---TAATCGTGCAGAGATTGTGTG
CCTACTTGATCATTTTATTTGTATCCCC---------TTGATGCTATATTACAAGTCAATAAAAATGCCCTTTATTGAAA
GAATTTTTTTCAATATATGACTGTTGAACTAAGCTCACAACTAATTACTCCCTCATGCA-TGCTTCATAATAATAAGTCT
ATATATGGATAGGAAAAAACATGTAATTCATTTTTCATTAGCACC----TATAGTGTACTAATGGAATTCCATATAGTAG
CAAATATTGAGA------ATCTGTCGTGTAAAACGAATTAATCTGTAAGCACATGTACACTGGCGTCTTTATCTTAACTA
ATATGCGGCGTGGTGTGGTAAAGTGGCAAAGAGTAAACGTGTAAAGAACTTCGT
>chr1D_1
TGTCATTTCGACCTTTTCAACTTC--TGGTATCGAACCCCTGGTCTTGGCACATGGATCCGACTATTTCTCATTTCACAG
AACATCCGAGCGGACCAACTTGGTCATCCAACCGAACCAACATCAGGGATCTTGAATCCTTAGTTTTGGATCATGGATTT
GATCCGAGCATCAGCCGTCCCATCTAACATGGGCATTTCGACCTTTCCGACTTCGAGAGTATCAAATCCCTAGTCATGGA
TCATGGATCTAACCTTCATGATTCTGAGCATCATTCGTCCCGCCCAACATGGGCATTTTGACATTTCGGACTTCCAGGGT
AACGAACCCCTAGTCTTGGATCATGGATCCGTCTTTCATGATTTCGAGCTTCATCGCTCCCACCCAACACGGTATCGACC
ACCAACTCCCGGGGTATCGAACCCCTGGTGCTGGACTGGATGAAGCTGTTTATAACAGTA--TGTGGCAGTGACCGTAAT
TAGCTGAAATAAGCTTTACACGCAATTATTGACACCCAGTCAAGTATCGCCATCAAAGACTAGATAGAGACGGATACCAC
CCCTTTCGTTGCCGTGCAGCACTCAGGTTAAATATCGTTAAACCTTGTAACTAGTTGCACTAGCTACCAAATTAACACTG
ATCTGGGATTTGAATAAGATGCCACTTTTCGTTTCAGAAACAGTCACACTT--CCTGTGACAAACTGGATGTGTGAAGAA
AAGATAGGGCCAGGACCCACTAGGGTACTACAGACAACGAAAGGTGAGTCAGGTTGCTTGCATCCGTAAAGGCAAGCAAA
TCAAGCAACCCTTGCAGCTTCTCCCTTCCCTCCGGCTTCCTCTCACACCTGTAGATTTGATATGTACTCTTGTCCTGCTT
CATCTTGGACTCCGACCACCCACCTCTCCGCCATCAAGCACCTCCCATGGTCTTGACATCCCAGAGCACT--------TT
---GTAGTAGTCAAGAGGAATCGTAGCTAGTAGCTAGGAGCGTCATCTCATGGATCCAGCAAAGTACTGGATGATAACCA
GGAGAAAGCAGGGTGATCAGAAGGCGCCTGCCGTCTTCAGCACGCCGCACATCGCCGTCGGCAGCGGCGGCGGCACCTCC
TCGGCCACCTACTACGAGTCGTGGGAGGAGCGCGCGTTCGCCCAGGACTCCGCGGGGAGCCTCGGGGGCTGCATCTGGCC
GCCGAGATCCTACTCGTGCAGCTTCTGCGGCCGAGAGTTCCGGTCGGCGCAGGCCCTCGGTGGGCACATGAACGTGCACC
GGAGGGACCGGGCCCGGCTCAAGCTCTCCGGGATGGTGGAGGATGGGGGCGGCGTCGACGTCCATGGCATGCCTCTTCAT
CAAGGCTACATGATCCAGCCGCTGCCATGCCCTCCTCCAAGACCTAGTGCTCCAAGCACAGAAGCTAACCCTAATCCAGT
ACGCAGCTTTCTTTCGGATCCAGGGAAGTCGTTGGTGGACGCTGCAACTGCAAGAACCATTTGGGGCAAACAAGTCTTGG
CCGCCCCTCTCGCGTCCCCATCAGACACCCAAGAACATGGTGAGAAGGATGTGTTTCTTCGCGACGCCGAGGTACGTTCA
GAGCAAGAACTGCGTGCTGGGGCTGGCGAGCTGAAGCTGAGCCTTTTGGGCCGCCGAACAAGAAGTGCCTTTGAGGATGA
TGATAAAGAAGACGATGAAAAGATTGTTCATCTATGTCGCAAGAGGAGGAGGATTGATCTGGAGGCTACCGAGTTCGTTC
TGTCTTCTTCCTCTAGTGAGCATCTGCAACGTGATGATCCTCGTGATGATGGCGACGATGATAATCGTCGTGTGAAGGTA
CTTAAGCTTTGTCCTAGCACCCCGGCCGAGGAACTAGATCTTGAGCTTAGGCTTTGAGACCATCCAAAACTATACTAGAG
CCCG----TGATTCCATCTGCCTGTTTATTTCTACAACATTGTACAAGTGCTTGTATTTAGTTATTTATTTTTCTTGCTT
TTTAGAAACGTTGGCTTGTTATTTTACA--TTTTT-AATCCTATTTTGGTCGATTTAATTGATTTGGGCAAGTCAATTCT
CTTTGCAAATGTCTAAAGGTGTACTCTAGAGGAAGCATCATCTCAACTGATTTGTCATATTTTGTAACAGGAGGTTGAAC
TCAAAATCAAGAGCTTACTTGCATACATGTGTGAAATTCAATGTCATTTTTCCTGTGTATGGCTTATATTTGTTCACCTA
GTTGTTTCATCGGACTGCATTTATGTTCAAGCATTTTGCAAAAACCCCGCACTACTAGAGGTTGCACTTGCATGCAATCC
CCTGCGTAAATGGCAAAAATGTTTCCGACTCTTGTAATCATCTTCGTTGGGTCAGCAGCTGCTTGGCATGGATCATCGTT
GCTCTTTTTTTT------TTCTTTGTAT-------TTTTCTTTCGCCTAGGCATAGCTTTGGTCTTGTATGATTTTGCTT
TATGCCAACATGATCCTTTGTGTGTGAGT--GT--TGGTGTTGAATGTGTGCATCCGCCTAATCATGCAGAGGCTGTGTA
TGTACTTGATCATGCTGTTTATATCCCC---------TTGATGCTATGTTACGAGTCAATAAAAATGCCCTTTATCGAGA
GAGAAAATTTCAATAAATGACTGTTGAACTAAGCTCACAACTAATTACTCCCTCATGCA-TGCTTTAGAATCGGTG---T
ATATATGGATAGGACAAAACATGTAATTCATTTTTCATTAGTACCTATATATAGTGTACTAATGGAATTCCATATAGCAA
ATA-----GAGA------ATCTGTCGTGTAAAACGAATTAATCTGTAAGCATATGTACACTGAAGCCTTTGTCTTAACTA
AGATGCGT-----TGTGGTAAAGTGGCAAAGAGTAAACGTGTAAAGAACTTCGT
>chr1B_4
---CATTTCGACCTTTCCAACTTCCGTGGCATCGAACCCCTAGTCTTGGCTCATGGATCCGACTA-TTCTCATTTCACAG
AACATCCGAGCGGACCAACTTGGTCATCCAACCGAACCAACATCAGTGATCTTGAATCCTTAGTCTTGGATCATGGATTT
GATCTGAGCATCAGCCGTCCCAGCCAACATGCGTATTTCGACATTTTTGACTTCCGGACTATCAAATCCCTGGTCATGGA
TCATGGGTCTAACCTTCATGATTCTGAGCATCATTCGTCCCGGCCAACATGGGCATTTCGACATTCC-GACTTCCAAGGT
AACGAACCCCTAGCCTTGGATCATGGATCCGTCTTTCATGATTTTGAGCTTCATCGCTCCCACCCAACACGGTATCGACC
ACCAACTCTCGGGGTATCGTACCCCTGGTGCTGGACTGGATTAAGCTGTTTATAACAGTATATGTGGCAGTGACCGTAAT
TAGCGGAAATAAGCTTTGCTTGCAATTATTGACACCCAGTCAAGTATCGCCATCAAAGACTAGATAGAGACGGATACCAC
CCCTTTCGTTGCCGTGCGGCACTCAGGTTAAATATCGTTAAACCTTGTAACTAGTTGCACTAGCTACCAAATTAACACTG
ATCTGGGATTTGAATAAGATGCCACTTTTCGTTTCAGAAACAGTCACACACTCCCTGTGACAAACTGGATGTGTGAAGAA
AAGATAGGGCCAGGACCCACTAGGGTACTACAGACAACGAAAGGTGAGTCAGGTTGCTTGCATCCGTAAAGGCAAGCAAA
TCAAGCAACCCTTGCAGCTTCTCCCTTCCCTCCGGCTTCCTCTCACACCTGTAGATTTGATATGTACTCTTGTCCTGCTT
CATCTTGGACTCCGACCACCCACCTCTCCGCCATCAAGCACCTCCCATGCTTTTGACATCCCAGAGCACT--------TG
TACGTAGTAGTCAAGAGGAGTCGCAGCTAGTAGCAAGGAGCGTCATCTCATGGATCCAGCAAAGTACTGGATGATAACCA
GGAGAAAGCAGGGTGATCAGAAGGCGCCGGCCGTCTTCAGCACGCCGCACATCACCGTCGGCAGCGGCGGCGGCGCCTCC
TCGGCATCCTACTACGAGTCGTGGGAGGAGCGCGCGTTCGCCCAGGACTCCGCGGGGAACCTCGGTGGCTGCATCTGGCC
ACCAAGATCCTACTCGTGCAGCTTCTGCGGCCGAGAGTTCCGGTCGGCTCAGGCGCTCGGCGGGCACATGAACGTCCACC
GGAGGGACCGGGCGAGGCTCAAGCTGTCCGGAATGGTGGAGGAGGGGGGCGGCGTCGACGTTCATGGCATGCCTCTGCAC
CAAGGCTACATGATCCAGCCGCTGCCGTGTCCTCCTCCAAGACCTAGTGCTCCAAGCACAGAAGCTAACCCTAATCCAGT
ACGCAGCTTTCTTTCGAATCCAGGGAGATCGTTGGTGGATGCTGCAACTGCAAGAACCATTTGGGGCAAACAGGTCTTGG
CCGCCCCTCTCGCCTCCCCGTCGGACACCCAAGAACATGGTGAGAAAGAGGTGTTTCTTCACGATGTCGAGGTACGTTCA
GAGCAAGAACTGCGTGCTGGGGGTGGCGAGCTGAAGCTGAGTCTTCTTGGACGCCGAACAAGGAGTGTCTATGAG---GA
TGATAAAGAAGACGATGAAAAGATTGTTCATCTATGTCGCAAAAGGAGGAGGATTGATCTGGAGGCTACCGAGTTCGCTC
TGTCTTCTTCCTCTAGCGAGCATCTGCAACGTGACGACCCTCGTGATGATGGCGAC---GATAATCGTCGTGTGAAGGTA
CTTAAGCTTTGTCCTAGCACCCCGGACGAGGAACTAGATCTTGAGCTTAGGCTTTGAGACTATCCAAAACTATACTAGAG
TCCGTGCATGATTCCATCTGCCTGTTTATTTCTACAACATTGTACAAGTGCTTGTATTTAGTTATTTATTTTTCTTGCTG
GGTAGAAACGTTGGCTTGCTTTTTTACA--TTTTTTAATCCTATTTCGGTCGATTTTATTGATTTGGGCAAGTCAATTCT
CTTTGGAAATGTGCAAAGGTGTACTCTAGAGGAAA---CATCTCAACTGATTTGTCATATTTTGTAACAGGAGGTTGAAC
TCAAAATCAAGAGCTTACTTGCATACATGTGTGAAATTCAATGACATTTTTCATGTGTATGGCTTATATTTGTTCACCTA
GTTGTTTCATCGGAT---ATTTATCTTCAAGCATTTTGCAAAAACCTCGCAC---TAGAGGTTGCACTTGCATGCAATCC
CCTGCGTAAATGGCAGAAATGTTTCTGACTCTTGTCATCATCTTCGTTGGGTCAGCAGCTGCTTGGCGTGGATCATCGTT
GCTCTCTCTTTT------TTCCTTTCTTCTTTGTATTTTCTTTCGCTTAGGCATAGCTTTGGTCTTGTATGATTTTGCTA
TATGCTAACATGATCCTTTGTGTGTGTGCGCGCCGTGGTGTTGAATGTGTGCATGC---TAGTCGTGTAGAGGTCAAGTG
CATATTCGTTGTGTTTATAACTTTATATCCACTCAGTTTGATGCTATATTATCAGTCAATAAAAATGCGCTTTATCAGAA
AAAAATCAACGACT------CTGTTGAACTGAGCTCACAACTAATTACTCCATCGGCTCTTGCTTTAGAACCGGCA---T
ATATATGGATAGGACAAGACATGCAATTCATTTTTCGTTAGTACC----TATAGTGTACTACTGGAATTCCACATAGCAA
ATA-----TAGAGATCGAATCTGTTGTGTAAAACAAATTAATCTGTAAGCATATGTACACTGGCGT-TTTATCTTAACTA
AGATGC-----GGTGTGGTAAAGTGGCAAAGAGTAAACGTGTAAAGAACTTTGT
>SNPs
---------------------------------S------------------------------------------SS--
--S------S---S-----------------------------------------------S----------------SS
------S------S-S----------------------------------------------------------------
-------------S-----------S----------S--------------------S---------SSS----S-----
-------------------------------S----------------S--------------------S---S------
---------S--------S-------------S-----------------------------------------------
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------S------------------------------------------------------SS--SSS-SSSSSSSSS--
----------------------------S---------------------------------------------------
--------------------------------------------------S-------------------------S---
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---------------------------------------------S----------------------------------
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---------------------------------------------------------------------------S----
------S--------------------------------------S----------------------------------
------------S---------------------S---------------------------------------------
----------------S----------------------S----------------------------------S-----
--------------------S---------------------------------------S-------------------
-S-S----------------------------------------------------------------------------
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------------------------------------------------S------------------S--S--------S
------------------SSS-S--SSSSS----------S---------------------------------------
------------------------------------------------------------------S----S--------
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----------------S-S--------------------------S------------S---------------------
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---S--------SSSSSS---------------------------S--SS------------------------------
------S----S------------------------------S-----------------------------S-------
-S------------------S-------------------------------S----------------------S----
---SS-S--------S-------------------------------------------------S-S---SSSS-SSS-
--------------S--------------------------S-----------------------------------S-S
SS-SSSSS-------------------------------------------S----------------------------
-S-----SSSS-------------------------------------------
>forward_94
--------------------------------------------------------------------------TTCGTA
GAAAACCGACCGGG------------------------------------------------------------------
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>reverse_1741
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------------------------------------------------------------AGAGGCTACCGAGTTCGTTC
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>forward_1555
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---------------CCCCATCAGACACCCAAGAC---------------------------------------------
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>reverse_2889
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--------CGTGGTGTGGTAAAGTGGCA--------------------------
