Multiple sequence alignment - TraesCS1A01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G310200 chr1A 100.000 3493 0 0 1 3493 500843801 500840309 0.000000e+00 6451.0
1 TraesCS1A01G310200 chr1A 82.011 895 133 18 1615 2509 500822829 500821963 0.000000e+00 736.0
2 TraesCS1A01G310200 chr1A 86.364 440 58 2 1033 1471 500823384 500822946 2.440000e-131 479.0
3 TraesCS1A01G310200 chr1D 91.707 2074 127 25 929 2990 405376368 405374328 0.000000e+00 2835.0
4 TraesCS1A01G310200 chr1D 93.898 508 24 4 2986 3493 405374249 405373749 0.000000e+00 760.0
5 TraesCS1A01G310200 chr1D 83.396 536 82 5 1963 2498 405285294 405284766 1.130000e-134 490.0
6 TraesCS1A01G310200 chr1D 86.927 436 54 3 1038 1471 405285748 405285314 1.460000e-133 486.0
7 TraesCS1A01G310200 chr1D 90.050 201 8 3 315 503 405378585 405378385 2.080000e-62 250.0
8 TraesCS1A01G310200 chr1D 94.017 117 7 0 685 801 405376509 405376393 9.960000e-41 178.0
9 TraesCS1A01G310200 chr1B 90.773 1875 108 31 886 2749 545277702 545275882 0.000000e+00 2444.0
10 TraesCS1A01G310200 chr1B 82.759 522 73 14 1993 2506 545165807 545165295 1.910000e-122 449.0
11 TraesCS1A01G310200 chr1B 88.728 346 34 3 219 559 545278289 545277944 5.390000e-113 418.0
12 TraesCS1A01G310200 chr1B 97.674 86 2 0 713 798 545277783 545277698 7.810000e-32 148.0
13 TraesCS1A01G310200 chr1B 83.553 152 22 2 3330 3481 545235426 545235278 4.700000e-29 139.0
14 TraesCS1A01G310200 chr1B 91.667 72 1 1 617 683 545277923 545277852 1.030000e-15 95.3
15 TraesCS1A01G310200 chr4A 88.462 312 31 5 1 310 259086855 259086547 4.260000e-99 372.0
16 TraesCS1A01G310200 chr4A 87.147 319 38 3 1 317 166198790 166198473 3.320000e-95 359.0
17 TraesCS1A01G310200 chr4A 86.581 313 37 5 1 310 492521854 492522164 1.200000e-89 340.0
18 TraesCS1A01G310200 chr4A 86.581 313 37 5 1 310 493738617 493738927 1.200000e-89 340.0
19 TraesCS1A01G310200 chr4A 82.609 92 8 6 798 888 623894007 623894091 1.340000e-09 75.0
20 TraesCS1A01G310200 chr5D 86.859 312 38 3 1 310 216997305 216997615 2.580000e-91 346.0
21 TraesCS1A01G310200 chr3D 86.581 313 39 3 1 311 525038158 525038469 3.340000e-90 342.0
22 TraesCS1A01G310200 chr3D 81.188 303 35 15 1016 1302 438566678 438566974 1.260000e-54 224.0
23 TraesCS1A01G310200 chr3D 77.778 279 43 15 1041 1302 438542916 438543192 1.680000e-33 154.0
24 TraesCS1A01G310200 chr7B 86.538 312 38 4 1 310 678927537 678927228 1.200000e-89 340.0
25 TraesCS1A01G310200 chr7B 83.000 200 27 3 3063 3261 559265055 559264862 1.290000e-39 174.0
26 TraesCS1A01G310200 chr7A 86.538 312 39 3 1 310 6358281 6358591 1.200000e-89 340.0
27 TraesCS1A01G310200 chr6D 86.538 312 39 3 1 310 366394859 366395169 1.200000e-89 340.0
28 TraesCS1A01G310200 chr6D 84.974 193 22 3 3070 3261 363466628 363466442 4.600000e-44 189.0
29 TraesCS1A01G310200 chr3B 83.276 293 38 8 1016 1302 574677871 574678158 3.460000e-65 259.0
30 TraesCS1A01G310200 chr3B 83.417 199 26 5 3064 3261 755478791 755478599 9.960000e-41 178.0
31 TraesCS1A01G310200 chr3B 83.249 197 26 5 3066 3261 254192881 254193071 1.290000e-39 174.0
32 TraesCS1A01G310200 chr3A 78.519 405 57 19 1016 1397 577559355 577559752 4.510000e-59 239.0
33 TraesCS1A01G310200 chr3A 83.000 200 26 4 3063 3261 560467064 560466872 1.290000e-39 174.0
34 TraesCS1A01G310200 chr3A 77.419 279 44 14 1041 1302 577076755 577077031 7.810000e-32 148.0
35 TraesCS1A01G310200 chr3A 87.500 96 4 4 794 888 725059422 725059510 1.710000e-18 104.0
36 TraesCS1A01G310200 chr5A 83.500 200 24 5 3064 3261 444536924 444536732 9.960000e-41 178.0
37 TraesCS1A01G310200 chr5A 86.598 97 7 4 795 891 349401375 349401465 6.170000e-18 102.0
38 TraesCS1A01G310200 chr5A 82.653 98 6 7 794 888 653386694 653386783 3.740000e-10 76.8
39 TraesCS1A01G310200 chr5A 97.619 42 1 0 2526 2567 426356813 426356854 4.840000e-09 73.1
40 TraesCS1A01G310200 chr2D 83.417 199 26 4 3064 3261 569200945 569200753 9.960000e-41 178.0
41 TraesCS1A01G310200 chr2D 85.417 96 3 9 795 888 195997043 195997129 4.800000e-14 89.8
42 TraesCS1A01G310200 chr7D 82.587 201 27 6 3063 3261 555059204 555059398 1.670000e-38 171.0
43 TraesCS1A01G310200 chr2A 86.957 92 4 4 798 888 54027820 54027904 2.870000e-16 97.1
44 TraesCS1A01G310200 chr4D 85.149 101 3 9 794 891 261792107 261792016 3.710000e-15 93.5
45 TraesCS1A01G310200 chr6A 85.870 92 5 4 798 888 499011144 499011228 1.340000e-14 91.6
46 TraesCS1A01G310200 chrUn 81.522 92 5 9 797 888 311422451 311422372 8.090000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G310200 chr1A 500840309 500843801 3492 True 6451.000 6451 100.0000 1 3493 1 chr1A.!!$R1 3492
1 TraesCS1A01G310200 chr1A 500821963 500823384 1421 True 607.500 736 84.1875 1033 2509 2 chr1A.!!$R2 1476
2 TraesCS1A01G310200 chr1D 405373749 405378585 4836 True 1005.750 2835 92.4180 315 3493 4 chr1D.!!$R2 3178
3 TraesCS1A01G310200 chr1D 405284766 405285748 982 True 488.000 490 85.1615 1038 2498 2 chr1D.!!$R1 1460
4 TraesCS1A01G310200 chr1B 545275882 545278289 2407 True 776.325 2444 92.2105 219 2749 4 chr1B.!!$R3 2530
5 TraesCS1A01G310200 chr1B 545165295 545165807 512 True 449.000 449 82.7590 1993 2506 1 chr1B.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 2439 0.238289 GACCGTTGCAACTCATGTGG 59.762 55.0 26.09 20.08 0.0 4.17 F
985 2725 0.243907 TCTCTCGCTTCAAGGTTCCG 59.756 55.0 0.00 0.00 0.0 4.30 F
2355 4136 0.036010 AACCGTGAAGAGGCTGATGG 60.036 55.0 0.00 0.00 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 3258 0.106335 TAGCTACGAGAGGGACGAGG 59.894 60.0 0.0 0.0 34.70 4.63 R
2420 4204 0.923358 AGGAACCACCCACTTCAACA 59.077 50.0 0.0 0.0 40.05 3.33 R
3469 5346 0.887836 CCATCCTCATCCCGCACATG 60.888 60.0 0.0 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.616159 GCCACTCTAGTTTTTGCCCA 58.384 50.000 0.00 0.00 0.00 5.36
20 21 1.269723 GCCACTCTAGTTTTTGCCCAC 59.730 52.381 0.00 0.00 0.00 4.61
21 22 1.886542 CCACTCTAGTTTTTGCCCACC 59.113 52.381 0.00 0.00 0.00 4.61
22 23 2.489073 CCACTCTAGTTTTTGCCCACCT 60.489 50.000 0.00 0.00 0.00 4.00
23 24 3.222603 CACTCTAGTTTTTGCCCACCTT 58.777 45.455 0.00 0.00 0.00 3.50
24 25 3.004734 CACTCTAGTTTTTGCCCACCTTG 59.995 47.826 0.00 0.00 0.00 3.61
25 26 1.960689 TCTAGTTTTTGCCCACCTTGC 59.039 47.619 0.00 0.00 0.00 4.01
26 27 1.963515 CTAGTTTTTGCCCACCTTGCT 59.036 47.619 0.00 0.00 0.00 3.91
27 28 1.203237 AGTTTTTGCCCACCTTGCTT 58.797 45.000 0.00 0.00 0.00 3.91
28 29 2.393646 AGTTTTTGCCCACCTTGCTTA 58.606 42.857 0.00 0.00 0.00 3.09
29 30 2.972021 AGTTTTTGCCCACCTTGCTTAT 59.028 40.909 0.00 0.00 0.00 1.73
30 31 3.066380 GTTTTTGCCCACCTTGCTTATG 58.934 45.455 0.00 0.00 0.00 1.90
31 32 2.008242 TTTGCCCACCTTGCTTATGT 57.992 45.000 0.00 0.00 0.00 2.29
32 33 1.544724 TTGCCCACCTTGCTTATGTC 58.455 50.000 0.00 0.00 0.00 3.06
33 34 0.403655 TGCCCACCTTGCTTATGTCA 59.596 50.000 0.00 0.00 0.00 3.58
34 35 0.811281 GCCCACCTTGCTTATGTCAC 59.189 55.000 0.00 0.00 0.00 3.67
35 36 1.614317 GCCCACCTTGCTTATGTCACT 60.614 52.381 0.00 0.00 0.00 3.41
36 37 2.359900 CCCACCTTGCTTATGTCACTC 58.640 52.381 0.00 0.00 0.00 3.51
37 38 2.026822 CCCACCTTGCTTATGTCACTCT 60.027 50.000 0.00 0.00 0.00 3.24
38 39 3.560025 CCCACCTTGCTTATGTCACTCTT 60.560 47.826 0.00 0.00 0.00 2.85
39 40 3.438087 CCACCTTGCTTATGTCACTCTTG 59.562 47.826 0.00 0.00 0.00 3.02
40 41 4.318332 CACCTTGCTTATGTCACTCTTGA 58.682 43.478 0.00 0.00 0.00 3.02
41 42 4.756642 CACCTTGCTTATGTCACTCTTGAA 59.243 41.667 0.00 0.00 31.90 2.69
42 43 5.413833 CACCTTGCTTATGTCACTCTTGAAT 59.586 40.000 0.00 0.00 31.90 2.57
43 44 6.006449 ACCTTGCTTATGTCACTCTTGAATT 58.994 36.000 0.00 0.00 31.90 2.17
44 45 6.491403 ACCTTGCTTATGTCACTCTTGAATTT 59.509 34.615 0.00 0.00 31.90 1.82
45 46 6.805271 CCTTGCTTATGTCACTCTTGAATTTG 59.195 38.462 0.00 0.00 31.90 2.32
46 47 7.308770 CCTTGCTTATGTCACTCTTGAATTTGA 60.309 37.037 0.00 0.00 31.90 2.69
47 48 6.902341 TGCTTATGTCACTCTTGAATTTGAC 58.098 36.000 0.00 0.00 39.09 3.18
79 80 6.751514 TTTTGTCACTCTTAGCTTTTGACA 57.248 33.333 0.00 1.31 43.65 3.58
81 82 6.942532 TTGTCACTCTTAGCTTTTGACAAT 57.057 33.333 17.37 0.00 46.87 2.71
83 84 8.621532 TTGTCACTCTTAGCTTTTGACAATAT 57.378 30.769 17.37 0.00 46.87 1.28
84 85 8.621532 TGTCACTCTTAGCTTTTGACAATATT 57.378 30.769 11.08 0.00 42.68 1.28
85 86 8.721478 TGTCACTCTTAGCTTTTGACAATATTC 58.279 33.333 11.08 0.00 42.68 1.75
86 87 8.721478 GTCACTCTTAGCTTTTGACAATATTCA 58.279 33.333 0.00 0.00 37.20 2.57
87 88 8.721478 TCACTCTTAGCTTTTGACAATATTCAC 58.279 33.333 0.00 0.00 0.00 3.18
88 89 8.725148 CACTCTTAGCTTTTGACAATATTCACT 58.275 33.333 0.00 0.00 0.00 3.41
89 90 9.289782 ACTCTTAGCTTTTGACAATATTCACTT 57.710 29.630 0.00 0.00 0.00 3.16
94 95 8.579682 AGCTTTTGACAATATTCACTTTTGTC 57.420 30.769 7.82 7.82 45.94 3.18
100 101 7.725610 GACAATATTCACTTTTGTCATTCGG 57.274 36.000 9.47 0.00 45.37 4.30
101 102 7.214467 ACAATATTCACTTTTGTCATTCGGT 57.786 32.000 0.00 0.00 0.00 4.69
102 103 7.083858 ACAATATTCACTTTTGTCATTCGGTG 58.916 34.615 0.00 0.00 0.00 4.94
103 104 3.980646 TTCACTTTTGTCATTCGGTGG 57.019 42.857 0.00 0.00 0.00 4.61
104 105 1.606668 TCACTTTTGTCATTCGGTGGC 59.393 47.619 0.00 0.00 0.00 5.01
105 106 1.336440 CACTTTTGTCATTCGGTGGCA 59.664 47.619 0.00 0.00 41.60 4.92
110 111 0.313672 TGTCATTCGGTGGCAAAAGC 59.686 50.000 0.00 0.00 40.05 3.51
111 112 0.313672 GTCATTCGGTGGCAAAAGCA 59.686 50.000 0.00 0.00 30.99 3.91
112 113 1.035923 TCATTCGGTGGCAAAAGCAA 58.964 45.000 0.00 0.00 0.00 3.91
113 114 1.410517 TCATTCGGTGGCAAAAGCAAA 59.589 42.857 0.00 0.00 0.00 3.68
114 115 2.159043 TCATTCGGTGGCAAAAGCAAAA 60.159 40.909 0.00 0.00 0.00 2.44
115 116 2.611225 TTCGGTGGCAAAAGCAAAAT 57.389 40.000 0.00 0.00 0.00 1.82
116 117 2.611225 TCGGTGGCAAAAGCAAAATT 57.389 40.000 0.00 0.00 0.00 1.82
117 118 2.911484 TCGGTGGCAAAAGCAAAATTT 58.089 38.095 0.00 0.00 0.00 1.82
118 119 3.274288 TCGGTGGCAAAAGCAAAATTTT 58.726 36.364 0.00 0.00 32.65 1.82
119 120 3.311048 TCGGTGGCAAAAGCAAAATTTTC 59.689 39.130 0.00 0.00 30.01 2.29
120 121 3.064545 CGGTGGCAAAAGCAAAATTTTCA 59.935 39.130 0.00 0.00 30.01 2.69
121 122 4.600032 GGTGGCAAAAGCAAAATTTTCAG 58.400 39.130 0.00 0.00 30.01 3.02
122 123 4.335037 GGTGGCAAAAGCAAAATTTTCAGA 59.665 37.500 0.00 0.00 30.01 3.27
123 124 5.504392 GTGGCAAAAGCAAAATTTTCAGAG 58.496 37.500 0.00 0.00 30.01 3.35
124 125 5.065090 GTGGCAAAAGCAAAATTTTCAGAGT 59.935 36.000 0.00 0.00 30.01 3.24
125 126 5.064962 TGGCAAAAGCAAAATTTTCAGAGTG 59.935 36.000 0.00 0.00 30.01 3.51
126 127 5.504392 GCAAAAGCAAAATTTTCAGAGTGG 58.496 37.500 0.00 0.00 30.01 4.00
127 128 5.504392 CAAAAGCAAAATTTTCAGAGTGGC 58.496 37.500 0.00 0.00 30.01 5.01
128 129 4.405116 AAGCAAAATTTTCAGAGTGGCA 57.595 36.364 0.00 0.00 0.00 4.92
129 130 4.405116 AGCAAAATTTTCAGAGTGGCAA 57.595 36.364 0.00 0.00 0.00 4.52
130 131 4.964593 AGCAAAATTTTCAGAGTGGCAAT 58.035 34.783 0.00 0.00 0.00 3.56
131 132 5.370679 AGCAAAATTTTCAGAGTGGCAATT 58.629 33.333 0.00 0.00 0.00 2.32
132 133 5.237779 AGCAAAATTTTCAGAGTGGCAATTG 59.762 36.000 0.00 0.00 0.00 2.32
133 134 5.007921 GCAAAATTTTCAGAGTGGCAATTGT 59.992 36.000 7.40 0.00 0.00 2.71
134 135 6.423862 CAAAATTTTCAGAGTGGCAATTGTG 58.576 36.000 7.40 0.00 0.00 3.33
135 136 5.534207 AATTTTCAGAGTGGCAATTGTGA 57.466 34.783 7.40 0.00 0.00 3.58
136 137 5.733620 ATTTTCAGAGTGGCAATTGTGAT 57.266 34.783 7.40 0.00 0.00 3.06
137 138 4.508461 TTTCAGAGTGGCAATTGTGATG 57.492 40.909 7.40 0.00 0.00 3.07
138 139 3.421919 TCAGAGTGGCAATTGTGATGA 57.578 42.857 7.40 1.19 0.00 2.92
139 140 3.753815 TCAGAGTGGCAATTGTGATGAA 58.246 40.909 7.40 0.00 0.00 2.57
140 141 4.338012 TCAGAGTGGCAATTGTGATGAAT 58.662 39.130 7.40 0.00 0.00 2.57
141 142 4.768448 TCAGAGTGGCAATTGTGATGAATT 59.232 37.500 7.40 0.00 0.00 2.17
142 143 4.862574 CAGAGTGGCAATTGTGATGAATTG 59.137 41.667 7.40 0.00 43.43 2.32
143 144 4.525487 AGAGTGGCAATTGTGATGAATTGT 59.475 37.500 7.40 0.00 42.81 2.71
144 145 4.813027 AGTGGCAATTGTGATGAATTGTC 58.187 39.130 7.40 0.00 44.67 3.18
148 149 6.542574 GGCAATTGTGATGAATTGTCAAAA 57.457 33.333 7.40 0.00 44.11 2.44
149 150 6.595794 GGCAATTGTGATGAATTGTCAAAAG 58.404 36.000 7.40 0.00 44.11 2.27
150 151 6.075280 GCAATTGTGATGAATTGTCAAAAGC 58.925 36.000 7.40 0.00 42.81 3.51
151 152 6.073440 GCAATTGTGATGAATTGTCAAAAGCT 60.073 34.615 7.40 0.00 42.81 3.74
152 153 7.116662 GCAATTGTGATGAATTGTCAAAAGCTA 59.883 33.333 7.40 0.00 42.81 3.32
153 154 8.980610 CAATTGTGATGAATTGTCAAAAGCTAA 58.019 29.630 0.00 0.00 38.16 3.09
154 155 8.752766 ATTGTGATGAATTGTCAAAAGCTAAG 57.247 30.769 0.00 0.00 37.30 2.18
155 156 7.509141 TGTGATGAATTGTCAAAAGCTAAGA 57.491 32.000 0.00 0.00 37.30 2.10
156 157 7.587629 TGTGATGAATTGTCAAAAGCTAAGAG 58.412 34.615 0.00 0.00 37.30 2.85
157 158 7.229306 TGTGATGAATTGTCAAAAGCTAAGAGT 59.771 33.333 0.00 0.00 37.30 3.24
158 159 7.536622 GTGATGAATTGTCAAAAGCTAAGAGTG 59.463 37.037 0.00 0.00 37.30 3.51
159 160 7.445096 TGATGAATTGTCAAAAGCTAAGAGTGA 59.555 33.333 0.00 0.00 37.30 3.41
160 161 7.750229 TGAATTGTCAAAAGCTAAGAGTGAT 57.250 32.000 0.00 0.00 0.00 3.06
161 162 8.846943 TGAATTGTCAAAAGCTAAGAGTGATA 57.153 30.769 0.00 0.00 0.00 2.15
162 163 9.283768 TGAATTGTCAAAAGCTAAGAGTGATAA 57.716 29.630 0.00 0.00 0.00 1.75
166 167 8.621532 TGTCAAAAGCTAAGAGTGATAAATGT 57.378 30.769 0.00 0.00 0.00 2.71
167 168 8.506437 TGTCAAAAGCTAAGAGTGATAAATGTG 58.494 33.333 0.00 0.00 0.00 3.21
168 169 8.721478 GTCAAAAGCTAAGAGTGATAAATGTGA 58.279 33.333 0.00 0.00 0.00 3.58
169 170 9.283768 TCAAAAGCTAAGAGTGATAAATGTGAA 57.716 29.630 0.00 0.00 0.00 3.18
170 171 9.897744 CAAAAGCTAAGAGTGATAAATGTGAAA 57.102 29.630 0.00 0.00 0.00 2.69
218 219 9.406113 TGGAATGACATTTATGATGTATTGTCA 57.594 29.630 1.39 6.08 45.10 3.58
223 224 9.571810 TGACATTTATGATGTATTGTCAAAAGC 57.428 29.630 1.38 0.00 40.14 3.51
230 231 7.076842 TGATGTATTGTCAAAAGCTAAGAGC 57.923 36.000 0.00 0.00 42.84 4.09
231 232 6.654582 TGATGTATTGTCAAAAGCTAAGAGCA 59.345 34.615 0.64 0.00 45.56 4.26
232 233 6.486253 TGTATTGTCAAAAGCTAAGAGCAG 57.514 37.500 0.64 0.00 45.56 4.24
238 239 4.678742 GTCAAAAGCTAAGAGCAGCAAAAG 59.321 41.667 0.64 0.00 45.56 2.27
240 241 3.911661 AAGCTAAGAGCAGCAAAAGTG 57.088 42.857 0.64 0.00 45.56 3.16
256 257 8.077991 CAGCAAAAGTGAGATGTCAAATTCTAA 58.922 33.333 0.00 0.00 33.27 2.10
310 312 8.306313 AGAGTGACAAAAATAAAGTTTTCCCT 57.694 30.769 0.00 0.00 0.00 4.20
312 314 7.847096 AGTGACAAAAATAAAGTTTTCCCTGT 58.153 30.769 0.00 0.00 0.00 4.00
313 315 8.973182 AGTGACAAAAATAAAGTTTTCCCTGTA 58.027 29.630 0.00 0.00 0.00 2.74
345 347 2.104792 TCGGATCATTTTCTAGGGCCTG 59.895 50.000 18.53 6.47 0.00 4.85
347 349 3.071023 CGGATCATTTTCTAGGGCCTGTA 59.929 47.826 18.53 0.00 0.00 2.74
387 401 0.767833 AAAATGCCAACTGCCCCCTT 60.768 50.000 0.00 0.00 40.16 3.95
455 469 1.078497 CCCAGCACGATACTTGGCA 60.078 57.895 0.00 0.00 0.00 4.92
555 599 1.270907 GAGTGGCCAAGGAAGAGAGA 58.729 55.000 7.24 0.00 0.00 3.10
559 603 0.545646 GGCCAAGGAAGAGAGATGCT 59.454 55.000 0.00 0.00 0.00 3.79
575 656 4.440880 AGATGCTCTCTGTCATTTGTAGC 58.559 43.478 0.00 0.00 31.12 3.58
579 660 3.370366 GCTCTCTGTCATTTGTAGCACTG 59.630 47.826 0.00 0.00 0.00 3.66
596 2264 4.185467 CACTGACTCATGTGCTACTTCT 57.815 45.455 0.00 0.00 0.00 2.85
597 2265 4.564041 CACTGACTCATGTGCTACTTCTT 58.436 43.478 0.00 0.00 0.00 2.52
598 2266 4.993584 CACTGACTCATGTGCTACTTCTTT 59.006 41.667 0.00 0.00 0.00 2.52
599 2267 5.119898 CACTGACTCATGTGCTACTTCTTTC 59.880 44.000 0.00 0.00 0.00 2.62
600 2268 5.011533 ACTGACTCATGTGCTACTTCTTTCT 59.988 40.000 0.00 0.00 0.00 2.52
601 2269 5.858381 TGACTCATGTGCTACTTCTTTCTT 58.142 37.500 0.00 0.00 0.00 2.52
602 2270 6.291377 TGACTCATGTGCTACTTCTTTCTTT 58.709 36.000 0.00 0.00 0.00 2.52
603 2271 6.767902 TGACTCATGTGCTACTTCTTTCTTTT 59.232 34.615 0.00 0.00 0.00 2.27
604 2272 7.283127 TGACTCATGTGCTACTTCTTTCTTTTT 59.717 33.333 0.00 0.00 0.00 1.94
699 2439 0.238289 GACCGTTGCAACTCATGTGG 59.762 55.000 26.09 20.08 0.00 4.17
798 2538 1.187974 CCCACCACACCACGATACTA 58.812 55.000 0.00 0.00 0.00 1.82
799 2539 1.134907 CCCACCACACCACGATACTAC 60.135 57.143 0.00 0.00 0.00 2.73
800 2540 1.822990 CCACCACACCACGATACTACT 59.177 52.381 0.00 0.00 0.00 2.57
801 2541 2.159282 CCACCACACCACGATACTACTC 60.159 54.545 0.00 0.00 0.00 2.59
802 2542 2.097825 ACCACACCACGATACTACTCC 58.902 52.381 0.00 0.00 0.00 3.85
803 2543 1.407979 CCACACCACGATACTACTCCC 59.592 57.143 0.00 0.00 0.00 4.30
804 2544 2.376109 CACACCACGATACTACTCCCT 58.624 52.381 0.00 0.00 0.00 4.20
805 2545 2.358267 CACACCACGATACTACTCCCTC 59.642 54.545 0.00 0.00 0.00 4.30
806 2546 2.241685 ACACCACGATACTACTCCCTCT 59.758 50.000 0.00 0.00 0.00 3.69
807 2547 2.619177 CACCACGATACTACTCCCTCTG 59.381 54.545 0.00 0.00 0.00 3.35
808 2548 2.241685 ACCACGATACTACTCCCTCTGT 59.758 50.000 0.00 0.00 0.00 3.41
809 2549 2.879646 CCACGATACTACTCCCTCTGTC 59.120 54.545 0.00 0.00 0.00 3.51
810 2550 2.879646 CACGATACTACTCCCTCTGTCC 59.120 54.545 0.00 0.00 0.00 4.02
811 2551 2.158638 ACGATACTACTCCCTCTGTCCC 60.159 54.545 0.00 0.00 0.00 4.46
812 2552 2.158652 CGATACTACTCCCTCTGTCCCA 60.159 54.545 0.00 0.00 0.00 4.37
813 2553 3.687551 CGATACTACTCCCTCTGTCCCAA 60.688 52.174 0.00 0.00 0.00 4.12
814 2554 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
815 2555 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
816 2556 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
817 2557 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
818 2558 5.098663 ACTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
819 2559 5.731678 ACTACTCCCTCTGTCCCAAAATAAT 59.268 40.000 0.00 0.00 0.00 1.28
820 2560 4.860022 ACTCCCTCTGTCCCAAAATAATG 58.140 43.478 0.00 0.00 0.00 1.90
821 2561 4.292306 ACTCCCTCTGTCCCAAAATAATGT 59.708 41.667 0.00 0.00 0.00 2.71
822 2562 5.491078 ACTCCCTCTGTCCCAAAATAATGTA 59.509 40.000 0.00 0.00 0.00 2.29
823 2563 6.011981 ACTCCCTCTGTCCCAAAATAATGTAA 60.012 38.462 0.00 0.00 0.00 2.41
824 2564 6.423182 TCCCTCTGTCCCAAAATAATGTAAG 58.577 40.000 0.00 0.00 0.00 2.34
825 2565 6.216662 TCCCTCTGTCCCAAAATAATGTAAGA 59.783 38.462 0.00 0.00 0.00 2.10
826 2566 6.889722 CCCTCTGTCCCAAAATAATGTAAGAA 59.110 38.462 0.00 0.00 0.00 2.52
827 2567 7.148069 CCCTCTGTCCCAAAATAATGTAAGAAC 60.148 40.741 0.00 0.00 0.00 3.01
828 2568 7.372451 TCTGTCCCAAAATAATGTAAGAACG 57.628 36.000 0.00 0.00 0.00 3.95
829 2569 6.938030 TCTGTCCCAAAATAATGTAAGAACGT 59.062 34.615 0.00 0.00 0.00 3.99
830 2570 7.446013 TCTGTCCCAAAATAATGTAAGAACGTT 59.554 33.333 0.00 0.00 38.41 3.99
831 2571 7.942990 TGTCCCAAAATAATGTAAGAACGTTT 58.057 30.769 0.46 0.00 36.28 3.60
832 2572 8.414778 TGTCCCAAAATAATGTAAGAACGTTTT 58.585 29.630 0.46 0.00 36.28 2.43
833 2573 9.251792 GTCCCAAAATAATGTAAGAACGTTTTT 57.748 29.630 9.22 9.22 36.28 1.94
834 2574 9.250624 TCCCAAAATAATGTAAGAACGTTTTTG 57.749 29.630 13.87 10.24 36.28 2.44
835 2575 9.250624 CCCAAAATAATGTAAGAACGTTTTTGA 57.749 29.630 13.87 1.47 35.87 2.69
846 2586 9.047871 GTAAGAACGTTTTTGATAGTACAATGC 57.952 33.333 13.87 0.00 0.00 3.56
847 2587 7.435068 AGAACGTTTTTGATAGTACAATGCT 57.565 32.000 0.46 0.00 0.00 3.79
848 2588 8.542497 AGAACGTTTTTGATAGTACAATGCTA 57.458 30.769 0.46 0.00 0.00 3.49
849 2589 8.656849 AGAACGTTTTTGATAGTACAATGCTAG 58.343 33.333 0.46 0.00 0.00 3.42
850 2590 7.900782 ACGTTTTTGATAGTACAATGCTAGT 57.099 32.000 0.00 0.00 0.00 2.57
851 2591 7.739295 ACGTTTTTGATAGTACAATGCTAGTG 58.261 34.615 0.00 0.00 0.00 2.74
852 2592 6.682863 CGTTTTTGATAGTACAATGCTAGTGC 59.317 38.462 0.00 0.00 40.20 4.40
874 2614 6.796629 GCAAAAAGCGTTCTTATATTCTGG 57.203 37.500 0.00 0.00 31.02 3.86
875 2615 5.743872 GCAAAAAGCGTTCTTATATTCTGGG 59.256 40.000 0.00 0.00 31.02 4.45
876 2616 6.404293 GCAAAAAGCGTTCTTATATTCTGGGA 60.404 38.462 0.00 0.00 31.02 4.37
877 2617 6.679327 AAAAGCGTTCTTATATTCTGGGAC 57.321 37.500 0.00 0.00 31.02 4.46
878 2618 3.978687 AGCGTTCTTATATTCTGGGACG 58.021 45.455 0.00 0.00 0.00 4.79
879 2619 3.057734 GCGTTCTTATATTCTGGGACGG 58.942 50.000 0.00 0.00 0.00 4.79
880 2620 3.243636 GCGTTCTTATATTCTGGGACGGA 60.244 47.826 0.00 0.00 45.11 4.69
881 2621 9.973376 AAAGCGTTCTTATATTCTGGGACGGAG 62.973 44.444 0.00 0.00 37.14 4.63
932 2672 0.246912 GATTCGCAGTTCGCAGTTCG 60.247 55.000 0.00 0.00 42.60 3.95
933 2673 2.227968 ATTCGCAGTTCGCAGTTCGC 62.228 55.000 0.00 0.00 42.60 4.70
934 2674 3.701530 CGCAGTTCGCAGTTCGCA 61.702 61.111 0.00 0.00 42.60 5.10
962 2702 1.406341 CCCGTTCGTCTCTCTCTCTCT 60.406 57.143 0.00 0.00 0.00 3.10
964 2704 2.612604 CGTTCGTCTCTCTCTCTCTCA 58.387 52.381 0.00 0.00 0.00 3.27
965 2705 2.603110 CGTTCGTCTCTCTCTCTCTCAG 59.397 54.545 0.00 0.00 0.00 3.35
968 2708 3.096852 TCGTCTCTCTCTCTCTCAGTCT 58.903 50.000 0.00 0.00 0.00 3.24
977 2717 2.027653 TCTCTCTCAGTCTCTCGCTTCA 60.028 50.000 0.00 0.00 0.00 3.02
985 2725 0.243907 TCTCTCGCTTCAAGGTTCCG 59.756 55.000 0.00 0.00 0.00 4.30
1013 2755 4.738998 TGCAATGGGCTCCGTGGG 62.739 66.667 0.00 0.00 45.15 4.61
1265 3007 2.347242 TTCGTGGACGCCGTGTACAA 62.347 55.000 0.00 0.00 45.06 2.41
1477 3231 2.202743 GCGGTAGCGCTGACATGA 60.203 61.111 30.48 0.00 0.00 3.07
1488 3242 0.460284 CTGACATGACCGGTACCAGC 60.460 60.000 7.34 0.00 0.00 4.85
1489 3243 1.188871 TGACATGACCGGTACCAGCA 61.189 55.000 7.34 0.00 0.00 4.41
1497 3251 1.255667 CCGGTACCAGCACTACACCT 61.256 60.000 13.54 0.00 0.00 4.00
1500 3254 1.204941 GGTACCAGCACTACACCTCAG 59.795 57.143 7.15 0.00 0.00 3.35
1501 3255 0.895530 TACCAGCACTACACCTCAGC 59.104 55.000 0.00 0.00 0.00 4.26
1502 3256 0.833834 ACCAGCACTACACCTCAGCT 60.834 55.000 0.00 0.00 35.63 4.24
1503 3257 1.186200 CCAGCACTACACCTCAGCTA 58.814 55.000 0.00 0.00 33.59 3.32
1504 3258 1.134965 CCAGCACTACACCTCAGCTAC 60.135 57.143 0.00 0.00 33.59 3.58
1515 3269 0.106918 CTCAGCTACCTCGTCCCTCT 60.107 60.000 0.00 0.00 0.00 3.69
1516 3270 0.107116 TCAGCTACCTCGTCCCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
1517 3271 1.153127 AGCTACCTCGTCCCTCTCG 60.153 63.158 0.00 0.00 0.00 4.04
1518 3272 1.451747 GCTACCTCGTCCCTCTCGT 60.452 63.158 0.00 0.00 0.00 4.18
1521 3275 0.179062 TACCTCGTCCCTCTCGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
1524 3278 1.474677 CCTCGTCCCTCTCGTAGCTAA 60.475 57.143 0.00 0.00 0.00 3.09
1525 3279 1.598601 CTCGTCCCTCTCGTAGCTAAC 59.401 57.143 0.00 0.00 0.00 2.34
1545 3299 1.397693 CGCGCAGTGTTCTTCTTTCTG 60.398 52.381 8.75 0.00 0.00 3.02
1551 3305 5.690409 CGCAGTGTTCTTCTTTCTGTAGTTA 59.310 40.000 0.00 0.00 0.00 2.24
1553 3307 7.254319 CGCAGTGTTCTTCTTTCTGTAGTTAAA 60.254 37.037 0.00 0.00 0.00 1.52
1555 3309 8.879759 CAGTGTTCTTCTTTCTGTAGTTAAACA 58.120 33.333 0.00 0.00 0.00 2.83
1568 3322 4.916983 AGTTAAACATTTCTGCAGCACA 57.083 36.364 9.47 0.00 0.00 4.57
1569 3323 5.458041 AGTTAAACATTTCTGCAGCACAT 57.542 34.783 9.47 0.00 0.00 3.21
1577 3345 5.473162 ACATTTCTGCAGCACATTACTGTAA 59.527 36.000 9.47 2.26 37.47 2.41
1589 3357 9.102757 AGCACATTACTGTAAATGATTAGTCTG 57.897 33.333 15.48 4.77 38.84 3.51
1610 3378 4.840271 TGAAATCTCATGCAGATGTCACT 58.160 39.130 17.31 0.03 45.48 3.41
1611 3379 4.634443 TGAAATCTCATGCAGATGTCACTG 59.366 41.667 17.31 0.00 45.48 3.66
1612 3380 4.482952 AATCTCATGCAGATGTCACTGA 57.517 40.909 7.99 0.00 41.47 3.41
1763 3531 2.548707 GCAGTGTGTCATCTTCACCTCA 60.549 50.000 0.00 0.00 35.25 3.86
1772 3540 5.185056 TGTCATCTTCACCTCATTCTACGAA 59.815 40.000 0.00 0.00 0.00 3.85
1799 3567 1.537202 AGCAACGCCATTGACTTTCTC 59.463 47.619 0.00 0.00 41.23 2.87
1851 3619 0.846427 TGGTCCTTGCATCCCCTTCT 60.846 55.000 0.00 0.00 0.00 2.85
1971 3742 2.507324 GCTTCCTCTCGGTGTCGC 60.507 66.667 0.00 0.00 36.13 5.19
2027 3798 1.072965 CAGAGCAAGGTCAGGTTCCTT 59.927 52.381 1.84 0.00 44.93 3.36
2036 3807 0.178992 TCAGGTTCCTTTGGGTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
2071 3850 4.047059 CGTGCAGGGCTTGGCTTG 62.047 66.667 0.00 2.06 0.00 4.01
2072 3851 4.368543 GTGCAGGGCTTGGCTTGC 62.369 66.667 20.91 20.91 38.68 4.01
2102 3881 4.612412 GACGGCGTGGTTGTCCCA 62.612 66.667 21.19 0.00 42.51 4.37
2135 3914 2.099756 GCTCAAAGTATTGTGCCATCCC 59.900 50.000 4.70 0.00 45.66 3.85
2294 4074 1.628846 GGGTACAGCCTCAAGGAGAAA 59.371 52.381 0.00 0.00 37.39 2.52
2355 4136 0.036010 AACCGTGAAGAGGCTGATGG 60.036 55.000 0.00 0.00 0.00 3.51
2530 4314 6.297353 GCTACATTCTCAAACAAACGTACTC 58.703 40.000 0.00 0.00 0.00 2.59
2534 4318 4.411256 TCTCAAACAAACGTACTCCCTT 57.589 40.909 0.00 0.00 0.00 3.95
2567 4351 4.139859 TCCTGTCGTGGTTTTAGTTCAA 57.860 40.909 0.00 0.00 0.00 2.69
2674 4458 4.199310 GGTCGATTTTCTCATGGAATGGA 58.801 43.478 0.00 0.00 46.73 3.41
2912 4706 6.659242 ACTCTTTGTCTTTGTCTTTGAAGGAA 59.341 34.615 0.00 0.00 0.00 3.36
3004 4881 9.543018 GCAAGTAAGTACATGACTATTTTGTTC 57.457 33.333 0.00 0.00 37.44 3.18
3068 4945 5.891551 ACAAGAAACTGGAAAAGCTTTAGGA 59.108 36.000 13.10 0.00 0.00 2.94
3073 4950 3.394606 ACTGGAAAAGCTTTAGGACTCCA 59.605 43.478 22.30 22.30 0.00 3.86
3084 4961 6.376581 AGCTTTAGGACTCCATTGATTCAAAG 59.623 38.462 2.68 0.00 0.00 2.77
3161 5038 6.038356 GGTTGTTCGATTCGTAGGATAGAAA 58.962 40.000 5.89 0.00 0.00 2.52
3162 5039 6.700520 GGTTGTTCGATTCGTAGGATAGAAAT 59.299 38.462 5.89 0.00 0.00 2.17
3164 5041 8.903723 GTTGTTCGATTCGTAGGATAGAAATAG 58.096 37.037 5.89 0.00 0.00 1.73
3165 5042 8.387190 TGTTCGATTCGTAGGATAGAAATAGA 57.613 34.615 5.89 0.00 0.00 1.98
3166 5043 8.843262 TGTTCGATTCGTAGGATAGAAATAGAA 58.157 33.333 5.89 0.00 0.00 2.10
3167 5044 9.843334 GTTCGATTCGTAGGATAGAAATAGAAT 57.157 33.333 5.89 0.00 28.08 2.40
3238 5115 4.640771 TTCTAGCATCCACTCAAACCTT 57.359 40.909 0.00 0.00 0.00 3.50
3242 5119 6.539173 TCTAGCATCCACTCAAACCTTTTTA 58.461 36.000 0.00 0.00 0.00 1.52
3247 5124 6.983890 GCATCCACTCAAACCTTTTTAAAAGA 59.016 34.615 17.91 0.00 0.00 2.52
3290 5167 5.052481 CGAGGATTGTATCTTCTCAATGCA 58.948 41.667 10.75 0.00 42.12 3.96
3307 5184 6.117488 TCAATGCAGACATAGTCATTGATGT 58.883 36.000 11.14 0.00 45.47 3.06
3400 5277 2.644299 TGAGTCATGGAGTGAACCCATT 59.356 45.455 0.00 0.00 42.18 3.16
3402 5279 2.376518 AGTCATGGAGTGAACCCATTGT 59.623 45.455 0.00 0.00 42.18 2.71
3464 5341 1.060937 GCAACATCGGCACATCGTC 59.939 57.895 0.00 0.00 0.00 4.20
3472 5349 2.400798 GCACATCGTCGCCACATG 59.599 61.111 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.269723 GTGGGCAAAAACTAGAGTGGC 59.730 52.381 0.00 0.79 35.91 5.01
2 3 2.863809 AGGTGGGCAAAAACTAGAGTG 58.136 47.619 0.00 0.00 0.00 3.51
5 6 1.960689 GCAAGGTGGGCAAAAACTAGA 59.039 47.619 0.00 0.00 0.00 2.43
6 7 1.963515 AGCAAGGTGGGCAAAAACTAG 59.036 47.619 0.00 0.00 0.00 2.57
7 8 2.080654 AGCAAGGTGGGCAAAAACTA 57.919 45.000 0.00 0.00 0.00 2.24
8 9 1.203237 AAGCAAGGTGGGCAAAAACT 58.797 45.000 0.00 0.00 0.00 2.66
9 10 2.900716 TAAGCAAGGTGGGCAAAAAC 57.099 45.000 0.00 0.00 0.00 2.43
10 11 2.703007 ACATAAGCAAGGTGGGCAAAAA 59.297 40.909 0.00 0.00 0.00 1.94
11 12 2.298729 GACATAAGCAAGGTGGGCAAAA 59.701 45.455 0.00 0.00 0.00 2.44
12 13 1.892474 GACATAAGCAAGGTGGGCAAA 59.108 47.619 0.00 0.00 0.00 3.68
13 14 1.202989 TGACATAAGCAAGGTGGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
14 15 0.403655 TGACATAAGCAAGGTGGGCA 59.596 50.000 0.00 0.00 0.00 5.36
15 16 0.811281 GTGACATAAGCAAGGTGGGC 59.189 55.000 0.00 0.00 0.00 5.36
16 17 2.026822 AGAGTGACATAAGCAAGGTGGG 60.027 50.000 0.00 0.00 0.00 4.61
17 18 3.340814 AGAGTGACATAAGCAAGGTGG 57.659 47.619 0.00 0.00 0.00 4.61
18 19 4.318332 TCAAGAGTGACATAAGCAAGGTG 58.682 43.478 0.00 0.00 0.00 4.00
19 20 4.623932 TCAAGAGTGACATAAGCAAGGT 57.376 40.909 0.00 0.00 0.00 3.50
20 21 6.506500 AATTCAAGAGTGACATAAGCAAGG 57.493 37.500 0.00 0.00 31.90 3.61
21 22 7.536622 GTCAAATTCAAGAGTGACATAAGCAAG 59.463 37.037 1.67 0.00 40.10 4.01
22 23 7.013178 TGTCAAATTCAAGAGTGACATAAGCAA 59.987 33.333 4.63 0.00 44.02 3.91
23 24 6.486320 TGTCAAATTCAAGAGTGACATAAGCA 59.514 34.615 4.63 0.00 44.02 3.91
24 25 6.902341 TGTCAAATTCAAGAGTGACATAAGC 58.098 36.000 4.63 0.00 44.02 3.09
55 56 7.151999 TGTCAAAAGCTAAGAGTGACAAAAA 57.848 32.000 12.67 0.00 44.06 1.94
56 57 6.751514 TGTCAAAAGCTAAGAGTGACAAAA 57.248 33.333 12.67 0.00 44.06 2.44
59 60 8.621532 AATATTGTCAAAAGCTAAGAGTGACA 57.378 30.769 11.57 11.57 45.03 3.58
60 61 8.721478 TGAATATTGTCAAAAGCTAAGAGTGAC 58.279 33.333 0.00 0.00 39.22 3.67
61 62 8.721478 GTGAATATTGTCAAAAGCTAAGAGTGA 58.279 33.333 0.00 0.00 0.00 3.41
62 63 8.725148 AGTGAATATTGTCAAAAGCTAAGAGTG 58.275 33.333 0.00 0.00 0.00 3.51
63 64 8.854614 AGTGAATATTGTCAAAAGCTAAGAGT 57.145 30.769 0.00 0.00 0.00 3.24
77 78 7.083858 CACCGAATGACAAAAGTGAATATTGT 58.916 34.615 0.00 0.00 39.82 2.71
78 79 6.527722 CCACCGAATGACAAAAGTGAATATTG 59.472 38.462 0.00 0.00 0.00 1.90
79 80 6.620678 CCACCGAATGACAAAAGTGAATATT 58.379 36.000 0.00 0.00 0.00 1.28
80 81 5.393027 GCCACCGAATGACAAAAGTGAATAT 60.393 40.000 0.00 0.00 0.00 1.28
81 82 4.083003 GCCACCGAATGACAAAAGTGAATA 60.083 41.667 0.00 0.00 0.00 1.75
82 83 3.305335 GCCACCGAATGACAAAAGTGAAT 60.305 43.478 0.00 0.00 0.00 2.57
83 84 2.034053 GCCACCGAATGACAAAAGTGAA 59.966 45.455 0.00 0.00 0.00 3.18
84 85 1.606668 GCCACCGAATGACAAAAGTGA 59.393 47.619 0.00 0.00 0.00 3.41
85 86 1.336440 TGCCACCGAATGACAAAAGTG 59.664 47.619 0.00 0.00 0.00 3.16
86 87 1.686355 TGCCACCGAATGACAAAAGT 58.314 45.000 0.00 0.00 0.00 2.66
87 88 2.791383 TTGCCACCGAATGACAAAAG 57.209 45.000 0.00 0.00 0.00 2.27
88 89 3.452474 CTTTTGCCACCGAATGACAAAA 58.548 40.909 11.35 11.35 37.75 2.44
89 90 2.801342 GCTTTTGCCACCGAATGACAAA 60.801 45.455 0.00 0.00 40.15 2.83
90 91 1.269517 GCTTTTGCCACCGAATGACAA 60.270 47.619 0.00 0.00 40.15 3.18
91 92 0.313672 GCTTTTGCCACCGAATGACA 59.686 50.000 0.00 0.00 40.15 3.58
92 93 0.313672 TGCTTTTGCCACCGAATGAC 59.686 50.000 0.00 0.00 46.87 3.06
93 94 1.035923 TTGCTTTTGCCACCGAATGA 58.964 45.000 0.00 0.00 46.87 2.57
94 95 1.863267 TTTGCTTTTGCCACCGAATG 58.137 45.000 0.00 0.00 46.87 2.67
95 96 2.611225 TTTTGCTTTTGCCACCGAAT 57.389 40.000 0.00 0.00 46.87 3.34
96 97 2.611225 ATTTTGCTTTTGCCACCGAA 57.389 40.000 0.00 0.00 46.87 4.30
97 98 2.611225 AATTTTGCTTTTGCCACCGA 57.389 40.000 0.00 0.00 46.87 4.69
98 99 3.064545 TGAAAATTTTGCTTTTGCCACCG 59.935 39.130 8.47 0.00 46.87 4.94
99 100 4.335037 TCTGAAAATTTTGCTTTTGCCACC 59.665 37.500 8.47 0.00 46.87 4.61
100 101 5.065090 ACTCTGAAAATTTTGCTTTTGCCAC 59.935 36.000 8.47 0.00 46.87 5.01
101 102 5.064962 CACTCTGAAAATTTTGCTTTTGCCA 59.935 36.000 8.47 0.00 46.87 4.92
102 103 5.504392 CACTCTGAAAATTTTGCTTTTGCC 58.496 37.500 8.47 0.00 46.87 4.52
104 105 5.064962 TGCCACTCTGAAAATTTTGCTTTTG 59.935 36.000 8.47 0.31 0.00 2.44
105 106 5.184711 TGCCACTCTGAAAATTTTGCTTTT 58.815 33.333 8.47 0.00 0.00 2.27
106 107 4.768583 TGCCACTCTGAAAATTTTGCTTT 58.231 34.783 8.47 0.00 0.00 3.51
107 108 4.405116 TGCCACTCTGAAAATTTTGCTT 57.595 36.364 8.47 0.00 0.00 3.91
108 109 4.405116 TTGCCACTCTGAAAATTTTGCT 57.595 36.364 8.47 0.00 0.00 3.91
109 110 5.007921 ACAATTGCCACTCTGAAAATTTTGC 59.992 36.000 8.47 4.25 0.00 3.68
110 111 6.258287 TCACAATTGCCACTCTGAAAATTTTG 59.742 34.615 8.47 0.00 0.00 2.44
111 112 6.347696 TCACAATTGCCACTCTGAAAATTTT 58.652 32.000 5.05 2.28 0.00 1.82
112 113 5.916318 TCACAATTGCCACTCTGAAAATTT 58.084 33.333 5.05 0.00 0.00 1.82
113 114 5.534207 TCACAATTGCCACTCTGAAAATT 57.466 34.783 5.05 0.00 0.00 1.82
114 115 5.244402 TCATCACAATTGCCACTCTGAAAAT 59.756 36.000 5.05 0.00 0.00 1.82
115 116 4.583907 TCATCACAATTGCCACTCTGAAAA 59.416 37.500 5.05 0.00 0.00 2.29
116 117 4.143543 TCATCACAATTGCCACTCTGAAA 58.856 39.130 5.05 0.00 0.00 2.69
117 118 3.753815 TCATCACAATTGCCACTCTGAA 58.246 40.909 5.05 0.00 0.00 3.02
118 119 3.421919 TCATCACAATTGCCACTCTGA 57.578 42.857 5.05 0.71 0.00 3.27
119 120 4.713824 ATTCATCACAATTGCCACTCTG 57.286 40.909 5.05 0.00 0.00 3.35
120 121 4.525487 ACAATTCATCACAATTGCCACTCT 59.475 37.500 5.05 0.00 44.47 3.24
121 122 4.813027 ACAATTCATCACAATTGCCACTC 58.187 39.130 5.05 0.00 44.47 3.51
122 123 4.281435 TGACAATTCATCACAATTGCCACT 59.719 37.500 5.05 0.00 44.47 4.00
123 124 4.558178 TGACAATTCATCACAATTGCCAC 58.442 39.130 5.05 0.66 44.47 5.01
124 125 4.868314 TGACAATTCATCACAATTGCCA 57.132 36.364 5.05 0.00 44.47 4.92
125 126 6.542574 TTTTGACAATTCATCACAATTGCC 57.457 33.333 5.05 0.00 44.47 4.52
126 127 6.073440 AGCTTTTGACAATTCATCACAATTGC 60.073 34.615 5.05 0.00 44.47 3.56
127 128 7.416154 AGCTTTTGACAATTCATCACAATTG 57.584 32.000 3.24 3.24 45.59 2.32
128 129 9.199982 CTTAGCTTTTGACAATTCATCACAATT 57.800 29.630 0.00 0.00 0.00 2.32
129 130 8.579006 TCTTAGCTTTTGACAATTCATCACAAT 58.421 29.630 0.00 0.00 0.00 2.71
130 131 7.939782 TCTTAGCTTTTGACAATTCATCACAA 58.060 30.769 0.00 0.00 0.00 3.33
131 132 7.229306 ACTCTTAGCTTTTGACAATTCATCACA 59.771 33.333 0.00 0.00 0.00 3.58
132 133 7.536622 CACTCTTAGCTTTTGACAATTCATCAC 59.463 37.037 0.00 0.00 0.00 3.06
133 134 7.445096 TCACTCTTAGCTTTTGACAATTCATCA 59.555 33.333 0.00 0.00 0.00 3.07
134 135 7.810658 TCACTCTTAGCTTTTGACAATTCATC 58.189 34.615 0.00 0.00 0.00 2.92
135 136 7.750229 TCACTCTTAGCTTTTGACAATTCAT 57.250 32.000 0.00 0.00 0.00 2.57
136 137 7.750229 ATCACTCTTAGCTTTTGACAATTCA 57.250 32.000 0.00 0.00 0.00 2.57
140 141 9.066892 ACATTTATCACTCTTAGCTTTTGACAA 57.933 29.630 0.00 0.00 0.00 3.18
141 142 8.506437 CACATTTATCACTCTTAGCTTTTGACA 58.494 33.333 0.00 0.00 0.00 3.58
142 143 8.721478 TCACATTTATCACTCTTAGCTTTTGAC 58.279 33.333 0.00 0.00 0.00 3.18
143 144 8.846943 TCACATTTATCACTCTTAGCTTTTGA 57.153 30.769 0.00 0.00 0.00 2.69
144 145 9.897744 TTTCACATTTATCACTCTTAGCTTTTG 57.102 29.630 0.00 0.00 0.00 2.44
192 193 9.406113 TGACAATACATCATAAATGTCATTCCA 57.594 29.630 0.00 0.00 41.39 3.53
197 198 9.571810 GCTTTTGACAATACATCATAAATGTCA 57.428 29.630 2.54 2.54 43.70 3.58
198 199 9.793252 AGCTTTTGACAATACATCATAAATGTC 57.207 29.630 0.00 0.00 38.08 3.06
204 205 8.830580 GCTCTTAGCTTTTGACAATACATCATA 58.169 33.333 0.00 0.00 38.45 2.15
205 206 7.337689 TGCTCTTAGCTTTTGACAATACATCAT 59.662 33.333 0.00 0.00 42.97 2.45
206 207 6.654582 TGCTCTTAGCTTTTGACAATACATCA 59.345 34.615 0.00 0.00 42.97 3.07
207 208 7.076842 TGCTCTTAGCTTTTGACAATACATC 57.923 36.000 0.00 0.00 42.97 3.06
208 209 6.404074 GCTGCTCTTAGCTTTTGACAATACAT 60.404 38.462 0.00 0.00 42.97 2.29
209 210 5.106555 GCTGCTCTTAGCTTTTGACAATACA 60.107 40.000 0.00 0.00 42.97 2.29
210 211 5.106555 TGCTGCTCTTAGCTTTTGACAATAC 60.107 40.000 0.00 0.00 42.97 1.89
211 212 5.003160 TGCTGCTCTTAGCTTTTGACAATA 58.997 37.500 0.00 0.00 42.97 1.90
212 213 3.822735 TGCTGCTCTTAGCTTTTGACAAT 59.177 39.130 0.00 0.00 42.97 2.71
213 214 3.213506 TGCTGCTCTTAGCTTTTGACAA 58.786 40.909 0.00 0.00 42.97 3.18
214 215 2.849942 TGCTGCTCTTAGCTTTTGACA 58.150 42.857 0.00 0.00 42.97 3.58
215 216 3.904136 TTGCTGCTCTTAGCTTTTGAC 57.096 42.857 0.00 0.00 42.97 3.18
216 217 4.339247 ACTTTTGCTGCTCTTAGCTTTTGA 59.661 37.500 0.00 0.00 42.97 2.69
217 218 4.443394 CACTTTTGCTGCTCTTAGCTTTTG 59.557 41.667 0.00 0.00 42.97 2.44
218 219 4.339247 TCACTTTTGCTGCTCTTAGCTTTT 59.661 37.500 0.00 0.00 42.97 2.27
219 220 3.885297 TCACTTTTGCTGCTCTTAGCTTT 59.115 39.130 0.00 0.00 42.97 3.51
220 221 3.480470 TCACTTTTGCTGCTCTTAGCTT 58.520 40.909 0.00 0.00 42.97 3.74
221 222 3.072944 CTCACTTTTGCTGCTCTTAGCT 58.927 45.455 0.00 0.00 42.97 3.32
222 223 3.070018 TCTCACTTTTGCTGCTCTTAGC 58.930 45.455 0.00 0.00 43.95 3.09
223 224 4.694509 ACATCTCACTTTTGCTGCTCTTAG 59.305 41.667 0.00 0.00 0.00 2.18
230 231 6.444633 AGAATTTGACATCTCACTTTTGCTG 58.555 36.000 0.00 0.00 0.00 4.41
231 232 6.645790 AGAATTTGACATCTCACTTTTGCT 57.354 33.333 0.00 0.00 0.00 3.91
232 233 8.801715 TTTAGAATTTGACATCTCACTTTTGC 57.198 30.769 0.00 0.00 0.00 3.68
285 287 8.197439 CAGGGAAAACTTTATTTTTGTCACTCT 58.803 33.333 0.00 0.00 0.00 3.24
288 290 9.589111 TTACAGGGAAAACTTTATTTTTGTCAC 57.411 29.630 0.00 0.00 0.00 3.67
298 300 9.856162 AAGATGTACTTTACAGGGAAAACTTTA 57.144 29.630 0.00 0.00 42.77 1.85
302 304 6.128363 CCGAAGATGTACTTTACAGGGAAAAC 60.128 42.308 0.00 0.00 42.77 2.43
310 312 8.786826 AAAATGATCCGAAGATGTACTTTACA 57.213 30.769 0.00 0.00 43.80 2.41
313 315 9.319143 CTAGAAAATGATCCGAAGATGTACTTT 57.681 33.333 0.00 0.00 39.13 2.66
317 319 6.741521 GCCCTAGAAAATGATCCGAAGATGTA 60.742 42.308 0.00 0.00 30.90 2.29
360 374 2.867647 GCAGTTGGCATTTTTGGGACTC 60.868 50.000 0.00 0.00 43.97 3.36
455 469 2.227089 GATTCCGCCTCTGTCCGTGT 62.227 60.000 0.00 0.00 0.00 4.49
555 599 3.937706 GTGCTACAAATGACAGAGAGCAT 59.062 43.478 0.00 0.00 40.29 3.79
559 603 4.281941 AGTCAGTGCTACAAATGACAGAGA 59.718 41.667 13.52 0.00 43.55 3.10
575 656 4.185467 AGAAGTAGCACATGAGTCAGTG 57.815 45.455 14.67 14.67 38.74 3.66
579 660 6.793492 AAAGAAAGAAGTAGCACATGAGTC 57.207 37.500 0.00 0.00 0.00 3.36
605 2273 7.775053 ATAGCACATGAGTTTTCCCTAAAAA 57.225 32.000 0.00 0.00 36.37 1.94
606 2274 7.775053 AATAGCACATGAGTTTTCCCTAAAA 57.225 32.000 0.00 0.00 32.15 1.52
607 2275 7.361713 CGAAATAGCACATGAGTTTTCCCTAAA 60.362 37.037 0.00 0.00 0.00 1.85
608 2276 6.093495 CGAAATAGCACATGAGTTTTCCCTAA 59.907 38.462 0.00 0.00 0.00 2.69
609 2277 5.584649 CGAAATAGCACATGAGTTTTCCCTA 59.415 40.000 0.00 0.00 0.00 3.53
610 2278 4.396166 CGAAATAGCACATGAGTTTTCCCT 59.604 41.667 0.00 0.00 0.00 4.20
611 2279 4.394920 TCGAAATAGCACATGAGTTTTCCC 59.605 41.667 0.00 0.00 0.00 3.97
612 2280 5.545658 TCGAAATAGCACATGAGTTTTCC 57.454 39.130 0.00 0.00 0.00 3.13
613 2281 7.378461 TGTTTTCGAAATAGCACATGAGTTTTC 59.622 33.333 12.12 2.91 0.00 2.29
614 2282 7.199766 TGTTTTCGAAATAGCACATGAGTTTT 58.800 30.769 12.12 0.00 0.00 2.43
615 2283 6.734137 TGTTTTCGAAATAGCACATGAGTTT 58.266 32.000 12.12 0.00 0.00 2.66
616 2284 6.312399 TGTTTTCGAAATAGCACATGAGTT 57.688 33.333 12.12 0.00 0.00 3.01
617 2285 5.940192 TGTTTTCGAAATAGCACATGAGT 57.060 34.783 12.12 0.00 0.00 3.41
618 2286 6.306356 CCTTTGTTTTCGAAATAGCACATGAG 59.694 38.462 12.12 12.48 0.00 2.90
619 2287 6.148948 CCTTTGTTTTCGAAATAGCACATGA 58.851 36.000 12.12 4.56 0.00 3.07
620 2288 5.345741 CCCTTTGTTTTCGAAATAGCACATG 59.654 40.000 12.12 8.66 0.00 3.21
621 2289 5.242838 TCCCTTTGTTTTCGAAATAGCACAT 59.757 36.000 12.12 0.00 0.00 3.21
622 2290 4.580995 TCCCTTTGTTTTCGAAATAGCACA 59.419 37.500 12.12 10.12 0.00 4.57
623 2291 4.915667 GTCCCTTTGTTTTCGAAATAGCAC 59.084 41.667 12.12 7.44 0.00 4.40
624 2292 4.825085 AGTCCCTTTGTTTTCGAAATAGCA 59.175 37.500 12.12 8.62 0.00 3.49
625 2293 5.154222 CAGTCCCTTTGTTTTCGAAATAGC 58.846 41.667 12.12 6.09 0.00 2.97
626 2294 5.472137 TCCAGTCCCTTTGTTTTCGAAATAG 59.528 40.000 12.12 7.07 0.00 1.73
678 2346 0.108585 ACATGAGTTGCAACGGTCCT 59.891 50.000 23.21 5.93 0.00 3.85
683 2351 1.464608 CCTACCACATGAGTTGCAACG 59.535 52.381 23.21 11.89 0.00 4.10
798 2538 4.292306 ACATTATTTTGGGACAGAGGGAGT 59.708 41.667 0.00 0.00 42.39 3.85
799 2539 4.860022 ACATTATTTTGGGACAGAGGGAG 58.140 43.478 0.00 0.00 42.39 4.30
800 2540 4.946160 ACATTATTTTGGGACAGAGGGA 57.054 40.909 0.00 0.00 42.39 4.20
801 2541 6.423182 TCTTACATTATTTTGGGACAGAGGG 58.577 40.000 0.00 0.00 42.39 4.30
802 2542 7.414098 CGTTCTTACATTATTTTGGGACAGAGG 60.414 40.741 0.00 0.00 42.39 3.69
803 2543 7.119262 ACGTTCTTACATTATTTTGGGACAGAG 59.881 37.037 0.00 0.00 42.39 3.35
804 2544 6.938030 ACGTTCTTACATTATTTTGGGACAGA 59.062 34.615 0.00 0.00 42.39 3.41
805 2545 7.141100 ACGTTCTTACATTATTTTGGGACAG 57.859 36.000 0.00 0.00 42.39 3.51
806 2546 7.513371 AACGTTCTTACATTATTTTGGGACA 57.487 32.000 0.00 0.00 0.00 4.02
807 2547 8.806177 AAAACGTTCTTACATTATTTTGGGAC 57.194 30.769 0.00 0.00 0.00 4.46
808 2548 9.250624 CAAAAACGTTCTTACATTATTTTGGGA 57.749 29.630 0.00 0.00 34.54 4.37
809 2549 9.250624 TCAAAAACGTTCTTACATTATTTTGGG 57.749 29.630 0.00 0.00 37.21 4.12
820 2560 9.047871 GCATTGTACTATCAAAAACGTTCTTAC 57.952 33.333 0.00 0.00 0.00 2.34
821 2561 8.995220 AGCATTGTACTATCAAAAACGTTCTTA 58.005 29.630 0.00 0.00 0.00 2.10
822 2562 7.871853 AGCATTGTACTATCAAAAACGTTCTT 58.128 30.769 0.00 0.00 0.00 2.52
823 2563 7.435068 AGCATTGTACTATCAAAAACGTTCT 57.565 32.000 0.00 0.00 0.00 3.01
824 2564 8.440833 ACTAGCATTGTACTATCAAAAACGTTC 58.559 33.333 0.00 0.00 0.00 3.95
825 2565 8.227791 CACTAGCATTGTACTATCAAAAACGTT 58.772 33.333 0.00 0.00 0.00 3.99
826 2566 7.623506 GCACTAGCATTGTACTATCAAAAACGT 60.624 37.037 0.00 0.00 41.58 3.99
827 2567 6.682863 GCACTAGCATTGTACTATCAAAAACG 59.317 38.462 0.00 0.00 41.58 3.60
828 2568 7.954906 GCACTAGCATTGTACTATCAAAAAC 57.045 36.000 0.00 0.00 41.58 2.43
840 2580 9.536049 TAAGAACGCTTTTTGCACTAGCATTGT 62.536 37.037 12.68 1.74 42.07 2.71
841 2581 7.272506 TAAGAACGCTTTTTGCACTAGCATTG 61.273 38.462 12.68 1.79 42.07 2.82
842 2582 5.278266 TAAGAACGCTTTTTGCACTAGCATT 60.278 36.000 12.68 5.11 42.07 3.56
843 2583 4.215399 TAAGAACGCTTTTTGCACTAGCAT 59.785 37.500 12.68 2.89 42.07 3.79
844 2584 3.562141 TAAGAACGCTTTTTGCACTAGCA 59.438 39.130 12.68 0.00 41.38 3.49
845 2585 2.688364 AGAACGCTTTTTGCACTAGC 57.312 45.000 4.26 4.26 43.06 3.42
846 2586 8.391106 AGAATATAAGAACGCTTTTTGCACTAG 58.609 33.333 0.00 0.00 43.06 2.57
847 2587 8.175069 CAGAATATAAGAACGCTTTTTGCACTA 58.825 33.333 0.00 0.00 43.06 2.74
848 2588 7.023575 CAGAATATAAGAACGCTTTTTGCACT 58.976 34.615 0.00 0.00 43.06 4.40
849 2589 6.251376 CCAGAATATAAGAACGCTTTTTGCAC 59.749 38.462 0.00 0.00 43.06 4.57
850 2590 6.321717 CCAGAATATAAGAACGCTTTTTGCA 58.678 36.000 0.00 0.00 43.06 4.08
851 2591 5.743872 CCCAGAATATAAGAACGCTTTTTGC 59.256 40.000 0.00 0.00 35.56 3.68
852 2592 6.967199 GTCCCAGAATATAAGAACGCTTTTTG 59.033 38.462 0.00 0.00 35.56 2.44
853 2593 6.183360 CGTCCCAGAATATAAGAACGCTTTTT 60.183 38.462 0.00 0.00 35.56 1.94
854 2594 5.293569 CGTCCCAGAATATAAGAACGCTTTT 59.706 40.000 0.00 0.00 35.56 2.27
855 2595 4.809426 CGTCCCAGAATATAAGAACGCTTT 59.191 41.667 0.00 0.00 35.56 3.51
856 2596 4.369182 CGTCCCAGAATATAAGAACGCTT 58.631 43.478 0.00 0.00 38.15 4.68
857 2597 3.243771 CCGTCCCAGAATATAAGAACGCT 60.244 47.826 0.00 0.00 0.00 5.07
858 2598 3.057734 CCGTCCCAGAATATAAGAACGC 58.942 50.000 0.00 0.00 0.00 4.84
859 2599 4.547532 CTCCGTCCCAGAATATAAGAACG 58.452 47.826 0.00 0.00 0.00 3.95
860 2600 4.262506 CCCTCCGTCCCAGAATATAAGAAC 60.263 50.000 0.00 0.00 0.00 3.01
861 2601 3.901844 CCCTCCGTCCCAGAATATAAGAA 59.098 47.826 0.00 0.00 0.00 2.52
862 2602 3.141460 TCCCTCCGTCCCAGAATATAAGA 59.859 47.826 0.00 0.00 0.00 2.10
863 2603 3.507411 TCCCTCCGTCCCAGAATATAAG 58.493 50.000 0.00 0.00 0.00 1.73
864 2604 3.116862 ACTCCCTCCGTCCCAGAATATAA 60.117 47.826 0.00 0.00 0.00 0.98
865 2605 2.449730 ACTCCCTCCGTCCCAGAATATA 59.550 50.000 0.00 0.00 0.00 0.86
866 2606 1.220750 ACTCCCTCCGTCCCAGAATAT 59.779 52.381 0.00 0.00 0.00 1.28
867 2607 0.635009 ACTCCCTCCGTCCCAGAATA 59.365 55.000 0.00 0.00 0.00 1.75
868 2608 0.635009 TACTCCCTCCGTCCCAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
869 2609 0.324091 GTACTCCCTCCGTCCCAGAA 60.324 60.000 0.00 0.00 0.00 3.02
870 2610 1.212934 AGTACTCCCTCCGTCCCAGA 61.213 60.000 0.00 0.00 0.00 3.86
871 2611 0.324460 AAGTACTCCCTCCGTCCCAG 60.324 60.000 0.00 0.00 0.00 4.45
872 2612 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
873 2613 0.614134 ACAAGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
874 2614 1.067071 CAACAAGTACTCCCTCCGTCC 60.067 57.143 0.00 0.00 0.00 4.79
875 2615 1.067071 CCAACAAGTACTCCCTCCGTC 60.067 57.143 0.00 0.00 0.00 4.79
876 2616 0.974383 CCAACAAGTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
877 2617 0.391263 GCCAACAAGTACTCCCTCCG 60.391 60.000 0.00 0.00 0.00 4.63
878 2618 0.391263 CGCCAACAAGTACTCCCTCC 60.391 60.000 0.00 0.00 0.00 4.30
879 2619 1.019805 GCGCCAACAAGTACTCCCTC 61.020 60.000 0.00 0.00 0.00 4.30
880 2620 1.003718 GCGCCAACAAGTACTCCCT 60.004 57.895 0.00 0.00 0.00 4.20
881 2621 1.302192 TGCGCCAACAAGTACTCCC 60.302 57.895 4.18 0.00 0.00 4.30
882 2622 1.866925 GTGCGCCAACAAGTACTCC 59.133 57.895 4.18 0.00 0.00 3.85
883 2623 1.491563 CGTGCGCCAACAAGTACTC 59.508 57.895 4.18 0.00 0.00 2.59
884 2624 1.959226 CCGTGCGCCAACAAGTACT 60.959 57.895 4.18 0.00 0.00 2.73
962 2702 1.621992 ACCTTGAAGCGAGAGACTGA 58.378 50.000 0.00 0.00 0.00 3.41
964 2704 1.273886 GGAACCTTGAAGCGAGAGACT 59.726 52.381 0.00 0.00 0.00 3.24
965 2705 1.715993 GGAACCTTGAAGCGAGAGAC 58.284 55.000 0.00 0.00 0.00 3.36
968 2708 1.292223 CCGGAACCTTGAAGCGAGA 59.708 57.895 0.00 0.00 0.00 4.04
977 2717 2.115266 CTGGTTGGCCGGAACCTT 59.885 61.111 22.04 0.00 45.07 3.50
985 2725 2.263540 CATTGCAGCTGGTTGGCC 59.736 61.111 17.12 0.00 0.00 5.36
1265 3007 1.862602 GAACGGCGCCTCCATTTTGT 61.863 55.000 26.68 9.42 34.01 2.83
1477 3231 1.538687 GGTGTAGTGCTGGTACCGGT 61.539 60.000 21.95 13.98 0.00 5.28
1488 3242 1.402259 CGAGGTAGCTGAGGTGTAGTG 59.598 57.143 0.00 0.00 0.00 2.74
1489 3243 1.004511 ACGAGGTAGCTGAGGTGTAGT 59.995 52.381 0.00 0.00 0.00 2.73
1497 3251 0.107116 GAGAGGGACGAGGTAGCTGA 60.107 60.000 0.00 0.00 0.00 4.26
1500 3254 0.179062 TACGAGAGGGACGAGGTAGC 60.179 60.000 0.00 0.00 34.70 3.58
1501 3255 1.868469 CTACGAGAGGGACGAGGTAG 58.132 60.000 0.00 0.00 34.70 3.18
1502 3256 0.179062 GCTACGAGAGGGACGAGGTA 60.179 60.000 0.00 0.00 34.70 3.08
1503 3257 1.451747 GCTACGAGAGGGACGAGGT 60.452 63.158 0.00 0.00 34.70 3.85
1504 3258 0.106335 TAGCTACGAGAGGGACGAGG 59.894 60.000 0.00 0.00 34.70 4.63
1517 3271 0.365859 GAACACTGCGCGTTAGCTAC 59.634 55.000 8.43 0.00 42.32 3.58
1518 3272 0.242825 AGAACACTGCGCGTTAGCTA 59.757 50.000 8.43 0.00 42.32 3.32
1521 3275 1.419374 AGAAGAACACTGCGCGTTAG 58.581 50.000 8.43 9.59 0.00 2.34
1524 3278 0.582005 GAAAGAAGAACACTGCGCGT 59.418 50.000 8.43 0.01 0.00 6.01
1525 3279 0.861837 AGAAAGAAGAACACTGCGCG 59.138 50.000 0.00 0.00 0.00 6.86
1526 3280 1.599542 ACAGAAAGAAGAACACTGCGC 59.400 47.619 0.00 0.00 32.67 6.09
1527 3281 4.051922 ACTACAGAAAGAAGAACACTGCG 58.948 43.478 0.00 0.00 32.67 5.18
1529 3283 8.879759 TGTTTAACTACAGAAAGAAGAACACTG 58.120 33.333 0.00 0.00 35.14 3.66
1530 3284 9.614792 ATGTTTAACTACAGAAAGAAGAACACT 57.385 29.630 0.00 0.00 0.00 3.55
1545 3299 5.757886 TGTGCTGCAGAAATGTTTAACTAC 58.242 37.500 20.43 0.00 0.00 2.73
1551 3305 5.221303 ACAGTAATGTGCTGCAGAAATGTTT 60.221 36.000 20.43 5.16 37.47 2.83
1553 3307 3.822735 ACAGTAATGTGCTGCAGAAATGT 59.177 39.130 20.43 7.33 37.47 2.71
1555 3309 6.573664 TTTACAGTAATGTGCTGCAGAAAT 57.426 33.333 20.43 3.97 37.47 2.17
1557 3311 5.704978 TCATTTACAGTAATGTGCTGCAGAA 59.295 36.000 20.43 2.96 36.95 3.02
1577 3345 7.991460 TCTGCATGAGATTTCAGACTAATCATT 59.009 33.333 0.00 0.00 36.61 2.57
1589 3357 4.874396 TCAGTGACATCTGCATGAGATTTC 59.126 41.667 0.00 5.73 39.64 2.17
1610 3378 5.440207 TTTCCATCAGACAAGGATCATCA 57.560 39.130 0.00 0.00 0.00 3.07
1611 3379 5.884792 AGTTTTCCATCAGACAAGGATCATC 59.115 40.000 0.00 0.00 0.00 2.92
1612 3380 5.824421 AGTTTTCCATCAGACAAGGATCAT 58.176 37.500 0.00 0.00 0.00 2.45
1763 3531 3.728268 CGTTGCTCTCGAGTTCGTAGAAT 60.728 47.826 13.13 0.00 45.90 2.40
1772 3540 1.016130 CAATGGCGTTGCTCTCGAGT 61.016 55.000 13.13 0.00 0.00 4.18
1799 3567 2.271497 CAGGGGAGCTCTTGCCTG 59.729 66.667 14.64 3.57 40.80 4.85
1982 3753 2.049985 CCGATGGCGATCTCGTCC 60.050 66.667 7.15 4.21 44.42 4.79
2006 3777 0.957888 GGAACCTGACCTTGCTCTGC 60.958 60.000 0.00 0.00 0.00 4.26
2062 3841 4.347453 CACCACCGCAAGCCAAGC 62.347 66.667 0.00 0.00 0.00 4.01
2063 3842 3.673484 CCACCACCGCAAGCCAAG 61.673 66.667 0.00 0.00 0.00 3.61
2067 3846 4.043200 GCTTCCACCACCGCAAGC 62.043 66.667 0.00 0.00 34.86 4.01
2068 3847 3.726517 CGCTTCCACCACCGCAAG 61.727 66.667 0.00 0.00 0.00 4.01
2069 3848 4.243008 TCGCTTCCACCACCGCAA 62.243 61.111 0.00 0.00 0.00 4.85
2070 3849 4.980805 GTCGCTTCCACCACCGCA 62.981 66.667 0.00 0.00 0.00 5.69
2102 3881 6.550159 CAATACTTTGAGCTGGTCACACCAT 61.550 44.000 9.38 0.00 40.44 3.55
2162 3941 1.737735 CAGCGTCGAGTTCATGCCA 60.738 57.895 0.00 0.00 0.00 4.92
2251 4030 2.358267 ACCTTCCACTCATCGACGATAC 59.642 50.000 10.57 0.00 0.00 2.24
2355 4136 1.448540 CCTCGCCATCACCACAGTC 60.449 63.158 0.00 0.00 0.00 3.51
2420 4204 0.923358 AGGAACCACCCACTTCAACA 59.077 50.000 0.00 0.00 40.05 3.33
2530 4314 3.877508 GACAGGAATTATGGAACGAAGGG 59.122 47.826 0.00 0.00 0.00 3.95
2534 4318 3.517602 CACGACAGGAATTATGGAACGA 58.482 45.455 0.00 0.00 0.00 3.85
2615 4399 3.095912 TGGTGGAGTACTAGCAGCTAA 57.904 47.619 3.09 0.00 31.84 3.09
2674 4458 9.716556 TTCTGGAAGTACTATTAGAAATCTCCT 57.283 33.333 11.16 0.00 33.76 3.69
2695 4479 6.824305 ATTACACCAAAGAGATTGTTCTGG 57.176 37.500 0.00 0.00 37.32 3.86
2831 4625 3.383761 CGGCAGAAAAGTGCAGAAAAAT 58.616 40.909 0.00 0.00 45.93 1.82
3068 4945 7.543359 TGAAAATCCTTTGAATCAATGGAGT 57.457 32.000 27.15 23.94 46.01 3.85
3073 4950 9.484806 ACTCCTATGAAAATCCTTTGAATCAAT 57.515 29.630 0.00 0.00 0.00 2.57
3084 4961 9.634021 AATCCTCTAAAACTCCTATGAAAATCC 57.366 33.333 0.00 0.00 0.00 3.01
3133 5010 3.061322 CCTACGAATCGAACAACCAACA 58.939 45.455 10.55 0.00 0.00 3.33
3136 5013 3.880047 ATCCTACGAATCGAACAACCA 57.120 42.857 10.55 0.00 0.00 3.67
3164 5041 8.386264 TCCATAGGAAAAATCCCTAGATGATTC 58.614 37.037 7.62 0.00 39.43 2.52
3165 5042 8.293027 TCCATAGGAAAAATCCCTAGATGATT 57.707 34.615 0.00 0.00 39.43 2.57
3166 5043 7.895144 TCCATAGGAAAAATCCCTAGATGAT 57.105 36.000 0.00 0.00 39.43 2.45
3167 5044 7.895144 ATCCATAGGAAAAATCCCTAGATGA 57.105 36.000 0.00 0.00 39.43 2.92
3168 5045 8.946797 AAATCCATAGGAAAAATCCCTAGATG 57.053 34.615 0.00 0.00 39.43 2.90
3242 5119 9.639601 CGAGGCCTAAAAATAAAGAATTCTTTT 57.360 29.630 32.37 19.42 43.07 2.27
3247 5124 7.116736 TCCTCGAGGCCTAAAAATAAAGAATT 58.883 34.615 27.39 0.00 34.44 2.17
3250 5127 5.687166 TCCTCGAGGCCTAAAAATAAAGA 57.313 39.130 27.39 0.58 34.44 2.52
3260 5137 3.527507 AGATACAATCCTCGAGGCCTA 57.472 47.619 27.39 10.50 34.44 3.93
3262 5139 2.630580 AGAAGATACAATCCTCGAGGCC 59.369 50.000 27.39 8.89 34.44 5.19
3315 5192 2.113774 CTTGCCTGTGGGTGCTCA 59.886 61.111 0.00 0.00 34.45 4.26
3325 5202 2.433145 TCTTCGAGCGCTTGCCTG 60.433 61.111 20.39 11.72 40.41 4.85
3400 5277 5.420739 GGGTTGGAGCCATAAAATTTAGACA 59.579 40.000 0.00 0.00 35.40 3.41
3402 5279 4.959839 GGGGTTGGAGCCATAAAATTTAGA 59.040 41.667 0.00 0.00 37.54 2.10
3469 5346 0.887836 CCATCCTCATCCCGCACATG 60.888 60.000 0.00 0.00 0.00 3.21
3471 5348 1.688884 TCCATCCTCATCCCGCACA 60.689 57.895 0.00 0.00 0.00 4.57
3472 5349 1.070445 CTCCATCCTCATCCCGCAC 59.930 63.158 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.