>input_sequence_49986
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---------------------ATGGGCTCCGTGGGGGTGCCGCCGTGCCACGTCGTGGCCGTGCCGTTCCCTGGCCGCGG
CCACGTCAACGCCATGCTGAACCTGTGCCGCCTCCTCGCCGCCCGCGACGGCGTCTCGGCCACCGTCGTCGTCACCGAGG
AGTGGCTCGGCCTGCTCGGCGGTCCCGCGCTCGCGCCGGGCGTCCGCCTCGAGGCCGTCCCCAACGTCATCCCCTCCGAG
CACGGCCGCGCCGCCGACTGGGCCGGGTTCGTGGACGCCGTGTACAACAAAATGGAGGCGCCGTTCGAGCGCCTGCTCGA
CCGTATCGGGGCCGCGCCCGCGGCCATTGTGACCGACACGTTCGTGCCGGGGGCAGTGCGCGTCGGCAACCGGCGGGGCG
TCCCCGTGTGCATCCTCTCGGCGCTCGGCGCCACCATGTTCTCCGTGCAGTACCGCTTCGACCGGTTGCCCACGGCTTCC
GGCGGTAGCGCTG------------ACATGACCGGTACCAGCACTACACCTCAGCTACCTCGTCCCTCTCGTAGCTAACG
CGCAGTGTTCTTCTTTCTGTAGTTAAACATTTCTGCAGCACAT--------------TACTGTAAATGATTAGTCTGAAA
TCTCATGCAGATGTCACTGATGATCCTTGTCTGATGGAAAACTACATTCCTGGACTCAAGTCGATCAGGCTTGCCGATCT
TGAGCCCACGCACTCCGACAAGATTAGGCTGGACAAAATCCTTGAAGCATACCCGTATGTGAGGAAAGCGCAGTGTGTCA
TCTTCACCTCATTCTACGAACTCGAGAGCAACGCCATTGACTTTCTCAGGCAAGAGCTCCCCTGCCCTGTGTTTGCCGTT
GGTCCTTGCATCCCCTTCTTGGCACTCCAAGAAAACCAGGCCGATTCAGAGGAAG---AAAAAGGCTACATGACTTGGCT
GGACACACAGCCGGCGAGCTCAGTGCTCTACGTCTCACTCGGCAGCTTCCTCTCGGTGTCGCCCGCCCAGATGGACGAGA
TCGCCATCGGCCTTGCGCAGAGCAAGGTCAGGTTCCTTTGGGTGCTGCGCGACGCGTGC--------GGCCGCGTGCAGG
GCTTGGCTTGCGGTGGTGGAAGCGACGGCGTGGTTGTCCCATGGTGTGACCAGCTCAAAGTATTGTGCCATCCCTCCATT
GGTGGGTTCATCACCCACTGTGGCATGAACTCGACGCTGGAGGCGCTGTACGCCGGCGTGCCGATGCTGACTCTGCCGAT
AGCCTTCGACCAGCCGATCAACAGCCGGCGT-ATCGTCGATGAGTGGAAGGTCGGGTACAGCCTCAAGGAGAAAGCCCGG
GCCGACGGCGTCATTGGTAGAGAGGAAATCGCGGAA-ACCGTGAAGAGGCTGATGGACT---GTGGTGATGGCGAGGGCA
CGAGGAGGAGAGCTTCGCTGCTGAAGGAGGCTTCTCGCGCCGCTGTTGAAGTGGGTGGTTCCTCGGACAGAGATATGACG
TCTTTCATCAATTACATTTCACAGTTCAAGAACTGA--------------------------------------------
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>chr1A_1_TraesCS1A01G310200
GCCACTCTAGTTTTTGCCCACCTTGCTTATGTCACTCTTGAATTTGACATTTTATTTTTTGTCACTCTTAGCTTTTGACA
ATATTCACTTTTGTCATTCGGTGGCAAAAGCAAAATTTTCAGAGTGGCAATTGTGATGAATTGTCAAAAGCTAAGAGTGA
TAAATGTGAAATAAAAAATTATCATTTTTCTATGGAATGACATTTATGATGTATTGTCAAAAGCTAAGAGCAGCAAAAGT
GAGATGTCAAATTCTAAAATGACATACATAAAATGAA-AAAAAACTAGAGTGACAAAAATAAAGTTTTCCCTGTAAAGTA
CATCTTCGGATCATTTTCTAGGGCCTGTAT------------GCGCGCGCACAGAGTCCCAAAAATGCCAACTGCCCCCT
TAAAAAACTCCAACTGGGTTTGCGGCGGATCTCGAGGCAGAAGCCGCCACCCCAGCACGATACTTGGCACACGGACAGAG
GCGGAATCCCGTCACGATTCACACAGCCGCCCAGTT-----------------------CGTCTCTCACTTCAAGGTTCG
AGCTGCAACGACGAGTGGCCAAGGAAGAGA-------GATGCT-------------------------------------
CTCTGTCATTTGTAGCACTGACTCATGTGC--------------------------------------------------
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-----------------TACTTCTTTCTTTTTTTTTTAGGGAAAACTCATGTGCTATTTCGAAAACAAAGGGACTGGAAC
AAGACATGACAGCCCATGCAGATGCAGGACC-------------------------------------------------
-----------------------GTTGCAACTCATGTGGTAGGCTGTACTATTCCAGCCCGTAGTCACACTATAGCCTGA
CACATTACAGATCACGAGGCCCATACGGCCGCCAAAAGCCCACCACACCACGATACTACTCCCTCTGTCCCAAAATAATG
TAAGAACGTTTTTGATAGTACAATGCTAGTGCAAAAAGCGTTCTTATATTCTGGGACGGAGGGAGTACTTGTTGGCGCAC
GGACAGAGGCACGATTCGCAGTTCGCAGTTCGCACAGCCGCCCCGTTCGTCTCTCTCTCTCTCAGTCTCTCGCTTCAAGG
TTCCGGCCAA--CCAGCTGCAATGGGCTCCGTGGGGGTGCCGCCGTGCCACGTCGTGGCCGTGCCGTTCCCTGGCCGCGG
CCACGTCAACGCCATGCTGAACCTGTGCCGCCTCCTCGCCGCCCGCGACGGCGTCTCGGCCACCGTCGTCGTCACCGAGG
AGTGGCTCGGCCTGCTCGGCGGTCCCGCGCTCGCGCCGGGCGTCCGCCTCGAGGCCGTCCCCAACGTCATCCCCTCCGAG
CACGGCCGCGCCGCCGACTGGGCCGGGTTCGTGGACGCCGTGTACAACAAAATGGAGGCGCCGTTCGAGCGCCTGCTCGA
CCGTATCGGGGCCGCGCCCGCGGCCATTGTGACCGACACGTTCGTGCCGGGGGCAGTGCGCGTCGGCAACCGGCGGGGCG
TCCCCGTGTGCATCCTCTCGGCGCTCGGCGCCACCATGTTCTCCGTGCAGTACCGCTTCGACCGGTTGCCCACGGCTTCC
GGCGGTAGCGCTG------------ACATGACCGGTACCAGCACTACACCTCAGCTACCTCGTCCCTCTCGTAGCTAACG
CGCAGTGTTCTTCTTTCTGTAGTTAAACATTTCTGCAGCACAT--------------TACTGTAAATGATTAGTCTGAAA
TCTCATGCAGATGTCACTGATGATCCTTGTCTGATGGAAAACTACATTCCTGGACTCAAGTCGATCAGGCTTGCCGATCT
TGAGCCCACGCACTCCGACAAGATTAGGCTGGACAAAATCCTTGAAGCATACCCGTATGTGAGGAAAGCGCAGTGTGTCA
TCTTCACCTCATTCTACGAACTCGAGAGCAACGCCATTGACTTTCTCAGGCAAGAGCTCCCCTGCCCTGTGTTTGCCGTT
GGTCCTTGCATCCCCTTCTTGGCACTCCAAGAAAACCAGGCCGATTCAGAGGAAG---AAAAAGGCTACATGACTTGGCT
GGACACACAGCCGGCGAGCTCAGTGCTCTACGTCTCACTCGGCAGCTTCCTCTCGGTGTCGCCCGCCCAGATGGACGAGA
TCGCCATCGGCCTTGCGCAGAGCAAGGTCAGGTTCCTTTGGGTGCTGCGCGACGCGTGC--------GGCCGCGTGCAGG
GCTTGGCTTGCGGTGGTGGAAGCGACGGCGTGGTTGTCCCATGGTGTGACCAGCTCAAAGTATTGTGCCATCCCTCCATT
GGTGGGTTCATCACCCACTGTGGCATGAACTCGACGCTGGAGGCGCTGTACGCCGGCGTGCCGATGCTGACTCTGCCGAT
AGCCTTCGACCAGCCGATCAACAGCCGGCGT-ATCGTCGATGAGTGGAAGGTCGGGTACAGCCTCAAGGAGAAAGCCCGG
GCCGACGGCGTCATTGGTAGAGAGGAAATCGCGGAA-ACCGTGAAGAGGCTGATGGACT---GTGGTGATGGCGAGGGCA
CGAGGAGGAGAGCTTCGCTGCTGAAGGAGGCTTCTCGCGCCGCTGTTGAAGTGGGTGGTTCCTCGGACAGAGATATGACG
TCTTTCATCAATTACATTTCACAGTTCAAGAACTGATATGTTCTTAGAGGCTACATTCTCAAACAAACGTACTCCCTTCG
TTCCATAATTCCTGTCGTGGTTTTAGTTCAAAAATACTAGTAGGTTCGTTATCATGATGTATTCGAATTCGATTTGTATT
AGCTGCTAGTACTCCACCATTTCCAAATGAACTCTGGTCGATTTTCTCATGGAATGGAGGAGATTTCTAATAGTACTTCC
AGAACAATCTCTTTGGTGTAATAAACTTGCACAAGATTCAATTGGTGGCAGATTGTTAATAACTCAAACTACTTTCTCTA
------GTGTAGTAAGTCGACTCCACCGGCCCTCTTTGCTTTTTT----ATGAGGTATTAACTCATTTTTCTGCACTTTT
CTGCCGGAGTAGTGTATTTGTGCATTTAACATCTCTTTGTACTCTTTGTCTTTGTCTTTGAAGGAAATAATTAATTATTA
CAATAGCTCTCCTTGTCTTTGAGAAAGTCACTTGCATTGTTCAGAACACTTGCAAGTAAGTAC-----------------
------------------------------------------------------------------ATGACTATTTTGTT
CAACTAATCTAACAAAAACCAGAGAAATGACCAATACCACACAAGAAACTGGAAAAGCTTTAGGACTCCATTGATTCAAA
GGATTTTCATAGGAGTTTTAGAGGATTAGAATTCTTAGGGTTTTTTCTATGTTGGTTGTTCGATTCGTAGGATAGAAATA
GAATCATCTAGGGATTTTTCCTATGGATTTCTTTGTATTACTTCTCATAGGATTTCTAGCATCCACTCAAACCTTTTTAA
AAGAATTCTTTATTTTTAGGCCTCGAGGATTGTATCTTCTCAATGCAGACATAGTCATTGATGTCATAGGTTGAGCACCC
ACAGGCAAGCGCTCGAAGAGCCACAACACACTTCATCAATGGAAAATCCTCGCAGTGAGTCATGGAGTGAACCCATTGTC
TAAATTTTATGGCTCCAACCCCTACACAGAACTATGGTGGTAGCAACATCGGCACATCGTCGCCACATGTGCGGGATGAG
GATGGAGGA
>chr1B_219
AAAAGGT-------------------------------------------------------------------------
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----------------------------------------------------------------TAAGAGTGACAAAATT
AAGATGTCAAATTCTAGAATGGCATAAGCAAAATGCACAATAAACTGGAATGGTAAAAACAAAATTTTCCCCGGGAAGAA
CATCTTCGGATCATTTTCTAGGGCCTCTCTGC---------CGCGCGCGCACACAGTCCTAAAAATGCCAACTGCCTCCT
AAAAAAACTCCAACTCGGTTTGCGGCGGATCTCGAGGCAGAAGCCGCCACCCCAGCACGATACTTGGCGCACGGACAGAG
GCGGAATCCCGTCACGATTCACACAGCCTCCCAGTT-----------------------CGTCTCTCACTTCAAGGTTCG
AGCTGCAACGACGAGTGGCCAAGCAAGAGA-------GCTGCAACGACGAGTGGCC------------------------
-------------AGTACTAACTCATGTGC--------------------------------------------------
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-----------------TACTG--------------------------------CGTTTCGAAAACAAAGGGACTGGAAC
AAGACATGACAGCCCATGCAGATGCTGGACTCACTATAGCCTGACCCATTATAGGTTGACACATTACAGATCTG------
--------------TACGCATAGGTTGCAACTCATGTG-------------TTCCAGCCCGTAGTCACACTATAGCCTGA
CACATTACAGATCACGAGGCCCATACGGCCGGCAAAAGCCCACCACACCACG----------------------------
----------------------------------------------------------------GTACTTGTTGGCGCAT
GGACAGAGGCACGATTCGCAGTTCGCAGTTC-----GCTGCCCCGTTCGGCTCTCTCTCTCGCTT------------AGG
TTCCAGCCAACCCCAGCTGCAATGGGCTCCGTGGCGGCGCCGCCGTGCCACGTCGTGGCCGTGCCGTTCCCTGGCCGCGG
CCACGTTAACGCGATGCTGAACCTGTGCCGCC-----------CGCGACGGCGTCTCGGCCACGGTCGTCGTCACCGAGG
AGTGGCTCGGCCTTCTCGGCGGTCCCGTGCTCGCGCCGGGCGTCCGCCTCGAGGCCATCCCCAACGTCATCCCCTCCGAG
CACGGCCGCGCGGCCGACTGGGCCGGGTTCGTGGACGCCGTGTACACCAAAATGGAGGCGCCGTTCGAGCTCCTGCTCGA
CCGTCTCGGGGCCGCGCCCGCGGCCATCGTCACCGACACGTTCGTGCCGGGGGCGGTGCGCGTCGGCAACCGGAGGGGCG
TCCCCGTGTGCATCCTCTCGGCGCTCGGCGCCACCATGTTCTCCGTGCAGTACCGCTTCGACCGGTTGCCCACGGCTGCC
CGCGGTAGCGCTG------------ACATGGCCGGTACCAGTTCTACGCCCCAA----CTCGTCCCTCGTAGTGTGA---
-----TGTTCTTCTTTGTCTAC---------TCTGCAGCAAGCCAGTGCATTAATGGTACTGTACATGATTAGCCTTAAA
TCTCATGCAGATGTCAC---TGATCCTTGTCTGATGGAAAACTATATTCCTGGACTCAAGTCGATCAGGCTAACCGATCT
TGAGCCCACGCACTCGGACAAGATTAGGCTGGACAAAATCCTTGAAGCATACCCGTATGTGAGGAAAGCACAATGTGTCA
TCTTCACCTCCTTCTACGAGCTCGAGAGCAACGCCATTGACTTTCTAAGGCAAGAGCTCCCCTGCCCGGTGTTTGCCGTT
GGTCCTTGCATCCCATTCATGTCACTCCAAGAAAACCAGGCAGATTCAGAGGAAG---AACAAGGCTACAAGACTTGGCT
GGACACACAGCCGGCGAGCTCAGTGCTCTACGTCTCACTCGGCAGCTTCCTCTCCGTGTCGTCCGCCCAGCTCGACGAGA
TCGCCATTGGCCTGGCCCAGAGCAAGGTCAGGTTCCTCTGGGTGCTCCGAGACGCGTGC--------TCCCGAGTGCAGG
ATTTGATCC------GTGGAGGCGACGGCGTGGTCGTTCCGTGGTGTGACCAGCTCAAGGTCCTGTGCCATCCATCCTC-
GGTGGGTTCTTCACCCACTGCGGCATGAACTCGACGCTCGAGGCGCTGTACGCCGGCGTGCCGATGCTGACTCTGCCGAT
AGCCTTCGACCAGCCGATCAACAGCCGGC-TGATCGTCGATGAGTGGAAGGTCGGGTACAGCCTCAAGGAGAAGGCCCGG
GCCGACGGCGTCATTGGTAGAGAGGAAATCGCGGAA-ACCGTGAAGAGGCTGATGAACCGTCGTGGTGATGGCGAGGGCA
CGAGGAGGAGAGCTTCGCTGCTGAAGGAGGCTTCCCGCGCCGCCGTTGAAGTGGGTGGTTCCTCGGACAGAGATATGGCG
TCTTTCATCAATTACATTTCACATTTCAAGGACTGATATGTTCTTAGAGGCTACATTCTCAAACAAACGTACTACCTCCG
TTCCATAATTCCTGTCGTGGTTTTAGTTCAGAAATACTAGTGGGTTCCTTATCGTGATGTATTCGAATTCGATATGTAGT
AGCTGCTAGTACTCCACCATTTCCAAATGAACTCTGGTCTATTTTCTCATGGAATGGGGGAGATTTCTAATACA---TTC
AGAATAATCTCTTTGGTGTAGTAAACTTGCACAAGATTCAATTGGTGGCAGA----------------------------
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>chr1D_315
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---------------------------------------------------------------------------AAGAA
CATCTTCGGATCATTTTCTAGGGCCTCTCTGGACGCGCGCGCGCCCACACACACAGTCCCAAAAATGCCAACTGCCCCCT
AAAAAAACTCCAACTGGGTTTGCGGCGGATCTCGAGGCAGAAGCCGCCACCCCAGCACGATGCTTGGCGCACGGACAGAG
GCGGAATCCCGTCACGATTCACAGAGCCGCCCAGTTTTGTTTTTTGTTTTTTGAGAGTTCGTCTCTCGCTTCAAGGTTCG
AGCCACGACCACGAGCTGCAATGGGGTGGGCTCCATGGCGGTAACGACGAGTGGCTACTGGCTAGGGAAGAGATGCTCAG
CTCTGTCATGTGTAGTACTAACTCGTGTGGAGTATACTGTATTTCGAAAAAAAAATGACTGCAAGGGCAAAACTACCACA
TTTGGGGCAGAGTAGACACATAACTGCCTACTTTGCCTCTTTTGTCTGAAAACTACCAACATTGAGGCAGGTATGTGACA
CATACCACTGTTCGCTCGGTTTAGCCATTTTCTGACCAGTCGGCCCCACTTTCAGGTCGACGTGGCAACGAACGACAGAC
ACGTAGCTGACGGCGTTAGGTCTTCGCTCGGACAGTGTTTGCCCAACAGTTCAGTCCAGCTCCACTCTCTCTCCCGTGCG
TTCTTGGACCATGGCGACTCATCACATAATTCTCTTATAATGGAAATACTACTCATCACATAATTCTTTAATCTTCCTCA
GCTTTGCCCTGGTACCTTCTTTCTGCTTGACCAAATCTGCAATCATTAACTCCAATTTTCTCTTCTCTTCCTTGATTTTA
TCCCTGTCCTTCTCTGCCTTGATCCTCAACACCTTATGCATGTTACTAGCTGCAGCATCCAGCTTTTTCTTCTCCTCCAG
TTCTGCCCTTGCATCAATGAGTGCTTGTTCAGCCTTTGCCTTCAGAGCAAGTGTGATCTGCTTCTCATTCACAGTCTTGT
TCACTTCTTCTTGGACAATCTTCAAATCACGGTGGAGCTTGGTTATTTCATCCCTAAACTTGAACTTTTCCTCCATACAG
TACAGAGCATCACTAACTCTTCCTTGTTTGGCTTCTCCATACATCTCCCATAATTTTCCAATAGCTTTCTGCAGTGATGA
TGGCCAATCTCCATCTACCCATTTAACATAATCACATCTTTCCCCAAACTACAGAAACATAGAACATTTTTATTTCATTA
GTTCCTAATTGAATTGCTACATTTACTGATGAGTAAGCAGTGATTAAAGAAATAGGTACAGGTAAATCACACACCTGCCC
TGCACATCCCAAAAATTTCCTTCCTGTCTCATATCCTTCCCAACCTACAAACTTTGCGGCAATGGCTCCACATTTACAAC
GTGGAGGTGTTGCTCCATCAGCTAACCCTTCCCAATCCGAGTCGTAAAGGGTCTTTAAGCCCTAAGAAATAGAATGTACA
TTGTGGCTGAGAGAAGATCTAGCTCGAATCATATATCCCCAATTCCTAAATCCCCAAATCAGAGAAACCCTAACCGTAGA
ATTCAGAAAAATGATGACTGACCTCGCTGGTAGCATTGCTGTGGTCCTCAGACGATTCCTCACCGTCTCCCCACGATACC
ATGTCGGGCGGCGAGGTAGAACCCCGGCGGCGGCGGCGGCGACGGGTGGCGTCGGGTGAGCGAGCGAGGAGACTGTTTCT
GTCTCGAACGGTGGTTATATCGCCTACCCAAGGAGACCTAATGGCCGTCAGCTACGTGTCCATCGTCCATTGCCACGTCG
ACCTGAACGTGGGGCCGACCGGTCAGAAAATAGCTAAACCGAGCGAACGGTGGTATGTGTCACATACCTGCCCCAATGTT
GGTAGTTTTCAGACAAAAGAGGCAAAGTAGGTAGTTATGTGTCTACTCTGCCCCAAATGTGGTAGTTCTGGATCATTTAC
TCAACTCGTGTGGAGTATACTG--------------------------------TATTTCGAAAAAAAAACGACTGGAAC
AACCCATGCAGGACCCAACATGGTACGCATAGGTTTTTTTTTTTTGAGAATTACGCATAGGTTTTTTTTTCAGACATAGG
TTTTTTTTTAGAATTACTCATAGGTTGCAACTCATGTGCTAGGCTGTACTATTCCAGCCCGTAGTCACACTATAGCCTGA
CGCGTTACAAATCACGAGGCCCATGCGGCCGCCAAAAGCCCACCCCACCACGATACTT----------------------
-------------------------------------------------------------------CTTGTTGGCGCAC
GGACAGAGGCACGGTTCGCA--------------CAGCCGCGACGTTCGTCTCTTTCTGGC----TCGCTCGCTTCGAGG
TTCAAGCCAA--CCAGCTGCAATGGGCTCCGTGGCGGTGCCGCCGTGCCACGTCGTGGCCATGCCGTTCCCTGGCCGCGG
TCACGTCAACGCCATGCTGAACCTGTGCCGCCTCCTCGCCGCCCGTGACGGCGTCTCGGCCACCGTCGTCGTCACCGAGG
AGTGGCTCGGCCTGCTCGGCGGCCCCGCGCTCGCGCCCGGCGTACGCCTCGAGGCCGTCCCCAACGTCATCCCCTCCGAG
CACGGCCGCGCCGCCGACTGGGTCGGGTTCGTGGACGCCGTGTACACCAAAATGGAGGCGCCGTTCGAGCGCCTCCTCGA
CCGTCTCGGGGCCGCGCCCGCGGCCATTGTGACCGACACGTTCGTGCCGGGGGCGGTGCGCGCCGGCAACCGGAGGGGCG
TCCCTGTGTGCATCCTCTCGGCGCTCGGCGCCACCATGTTCTCCGTGCAGTACCGCTTCGATCGGTTGCCCACGGCTGCC
GGCGGTAGCGCTG------------ACATGGCCGGTACCAGTTCTACGCCCCAA----CTCGTCCCTCGTAGT-------
--------TCTTCTTTGTCTAC---------TCTGCAGCACGCCAGTGCATTAATGGTACTGTACATGATCAGTCTTAAA
TCTCATGCAGATGTCAC---TGATCCTTGTCTGATGGAAAACTACATTCCTGGACTCAAGTCGATCCGGCTTGCCGATCT
TGAGCCCACGCACTCCGACAAGATTAGGCTGGACAAAATTCTTGAAGCATACCCTTACGTGAGGAAAGCGCAATGTGTCA
TCTTCACCTCCTTCTACGAGCTCGAGAGCAACGCCATTGACTTTCTAAGGCAAGAGCTCCCTTGCCCTGTGTTTGCCGTT
GGTCCTTGCATCCCCTTCATGGCACTCCAAGAAAACCAGGCCAATCCAGAGGAAG---AAA---GCTACATGGCTTGGCT
GGACACACAGCCTGCGAGCTCAGTGCTCTACGTCTCACTCGGCAGCTTCCTCTCAGTGTCGGCCACCCAGCTCGACGAGA
TCGCCATTGGCCTTGCCCAGAGCAAGGTCAGGTTCCTCTGGGTGCTCCGCGACAAGTGC--------TCCCGAGTGCAGG
ATTTGATCC------GTGGAAGCGACGGCGTGGTCGTTCCGTGGTGTGACCAGCTCAAAATCCTGTGCCATCCATCCATT
GGTGGGTTCTTCACCCACTGCGGCATGAACTCGACGCTGGAGGCGCTGTACGCCGGCGTGCCGATGCTGACCCTGCCGAT
AGCCTTCGACCAGCCGATCAACAGCCGGC-TGATCGTCGATGAGTGGAAGGTTGGGTACAGCCTCAAGGAGAAGGCCCGG
GCCGACGGCGTCATTGGTAGAGGGGAAATCGCTGGA-GCCGTGAAGAGGCTGGTGAACT---GTGGTGATGGCGAGGGCA
CGAGGAGGAGAGCTTCTGTGCTGAAGGAGGCTTCTCGCGCCGCCGTTGAAGTGGGTGGTTCCTCTGACAGAGATATGGTG
TCTTTCATCAATTACATTTCACATTTCAAGGACTGATGTGTTCTTAGAGGCTACGTTCTCAAACAAACGTACTACCTCTG
TTCCATAATTCCTGTTGTGGTTTTAGTTCAGAAATACTAGTAGGTTCGTTATCGTGATGTATCCGAATTTGATTTGTAGT
ATCTGCTAGTACTCCACCATTTCCGAATGAACTCTGGTCGATTTTCTCATGGAATGGGGGAGATTTCTAATAGTACTTTC
AGAACAATCTCTTTGGTGTAATAAGCTTGCACAACATTCAATTGGTGGCAGATTGTTAATAACTCAAACTACTTTCTCTA
CTACTCGTGTAGTAAGTCGACTCCACCGGCCCTCTTTGCTTTTTTTTTTATGAGCTATTAACTCCTTTTTCTGCACTTTT
CTGCCGGAGTAGTGTATTTGTGCATTTAACATCTCTTTGTACTCTTTGTCTTTGTCTTTGAAGGA-ATAATTAATTATTA
CAATAGCTCTCCTTGTCTTTGAGAAAGTCACTTGCATTGTTCAGAACACTTGCAAGTAAGTACTCCCTCTGTAAACTAAT
ATAAGAGTGTTTAGAATACTAAAGTAGTATTATAAACGCTCTTATATTAGTTTACGGAGGGAGTACATGACTATTTTGTT
TAACTAATCTAACAAAAACCAGAGAAATGACCAATACCACACAAGAAACTGGAAAAGCTTTAGGGCTCCTTTGATTCAAA
TGATTTTCATAGGAGTTTTAGAGGATTAGAATCCTTAGGGTTTTTTCTACGTCGGTTGTTCGATTCGTAGGATAGAATCA
-----ATCTAGGGATTTTTCTTATGGATTTCTTTGTATTACTTCTCATAGGATTTCTAGCATCCACTCAAACCTCTTTGA
AAGGATCCTTTATTTTGATGCCTCGAGGATTGTATCTTCTCAATGCGGACATAGTCATTGATGGCATATGTCGAGCACCC
ATAGGCAAGCGCTCGAAGAGCCACAACACACTTCATCAATGGAAAATCCTCGCAGTGAGTCATGGAGTGAACCCATCGCC
TAAATTTTATGGCTCCAACCCCTACACAGAACTATGGTGGTAGCAACATCGGCACATCGTTGCCATA--TGCGGGATGAG
GATGGAGGA
>chr1A_1033
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-----------------------------------------------------CGTGGCCGTGCCGTACCCTGGCCGCGG
CCACATCAACGCGATGCTGAACCTGTGCCGTGTCCTCGCCGCCCGGGGCGGCGTGTCCTCCACCATCGTCGTCACCGAGG
AGTGGCTCGGCCTGCTCGGCGGCGGGCCCGCGCCGTCGGGCGTCCGCCTGGAGGCCATCCCCAACGTCGCCCCCTCCGAG
CACGGCCGCGCCGCCGACATGGTCGGGTTCGTCGAGGCCGTGTACACCCGGATGGAGGCTCCCTTCGAGCACCTCCTCGA
CCGGCTCGGGGCCGCGCCCGCGGCCATCGTCGCCGACACGTTCGTGCCCTGGGCGGTGCGCGTCGGCGACCGGAGGGGCG
TCCCGGTGTGCGTCCTCTCGCCGCTCAGCGTCACCATGTTCTCCGTGCAGTACCACTTCCACCGCCTGCCCGTGGCCGCC
GACGGTACCGCTTCTCCGGTGTCTGACAACTCAGGTACAAGTTCTCCAACCCAAACTTTCCAGATCGTAATCAAATTTGT
TGGGATTTCACCACAACAATGGTTGATCTTAGTAT---------------------------------------------
-----TGCAGATGGCAA---GGATTCTTGTCTGATTGAGAGCTACATTCCTGGCCTGAAGTCAATCAGGTTAGCCGATCT
TGAGCCCACACACTCCAACAAGGTAGTGCTGAACCAGGTCCTTGAAGCA---------------------CAGTGTGTCA
TCTTCACCTCCTTCTACGAGCTCGAGAGCGACGCCATTGACTCCCTAAGGCGAGAGCTCCGCTGCCCCGTGTTCGCCGTT
GGCCTTTGCATCCCCTTCATGGTACTCCAAGAACACAATGCCAGTTCTTCACAAGAGCAAG---GCTACATGGCTTGGCT
GGACACGCAGCCGGTGAACTCAGTGTTGTATGTCTCACTCGGCAGCTACCTCTCGGTGTCGTCCGCTCAGCTCGACGAGA
TCGCCGTTGGCCTGGCCCAGAGCAATGTCAGGTTCCTGTGGGTGCTCCGCGATGCATGC--------GCCGGTGTGCGCG
ATTTGATCC------GTGGAAGCCACTGTGTGATCGTCCCGTGGTGTGACCAACTCAAGGTGTTGTGCCATCCTTCGGTT
GG-GGGTTCTTCACCCACTGCGGCATGAACTCGACGCTGGAGGCGCTCTACGCCGGCGTGCCGATGCTGACTCTGCCGAT
AGCTTTCGACCAGCCGATCAATAGCCGGC-TGATCGTCGATGAGTGGAAGGTTGGGCACAACCTCAAGGAGAAGGTCCGG
GGCGATGACGTCATCGGAAGAGATGAAATTGATGAA-GGTGTTAAGAGGCTCATGAATT---GTGACGACGGTGAGGGCA
CGAGGGGGAGAGCTTCGCTTATGAAAGAGGCTTCTCGCGCCGCGGTCGAAGTGGGTGGTTCATCGGGCAGCGATATCACG
TCTTTCATCAGTTACATTTCACGGCTCAATAATTGAAATGTTGTTAGAGACT----------------------------
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>chr1D_1038
CCGTCG--------------------------------------------------------------------------
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---------------------------------------------------------------CCGCACCCTGGCCGCGG
CCACATCAACGCGATGCTGAACCTGTGCCGCCTCCTCGCCGCCCGGGGCGGCGTCTCCGCCACCGTCGTCGTCAGCGAGG
AGTGGCTCGGCCTGCTCGGCGGCGGGCCCGCGCCGTCGGGCGTCCGCCTGGAGGCCATCCCCAACGTCGTCCCCTCCGAG
CACGGCCGCGCCGAGGACATGGCCGGGTTCGTCGAGGCCGTGTACACCCGGATGGAGGCTCCCTTCGAGCGCCTCCTCGA
CCGGCTCGGGGCCGCGCCGGCGGCCATATTCGCCGACACGTTCGTGCCCTGGGCCGTGCGCGTAGGCAACCGGAGGGGCG
TCCCGGTGTGCGTCCTCTCGCCACCCAGCGCCACCATGTTCTCCGTGCAGTACCGCTTCGACCGCCTGCCCGTGGCCGCC
GGCGGTACCGCTTGTCCGGTGTCTGACAACT-------------------------------------------------
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----------------------------------------------------TCGGTGTCGTCCGCTCAGCTCGACGAGA
TCGCCATTGGCCTGGCCGAGAGCAAGTTCAGGTTCCTCTGGGTGCTCCGCGACGCCTGC--------GCCGGCGTGCACG
ATTTGATCC------GTCGAGGCGACTGTGTGATCGTCCCGTGGTGTGACCAGCTCAATGTATTGTGCCATCCTTCCGTT
GGGGGGTTCTTCACCCGCTGCGGCATGAACTCGACGCTGGATGCGCTGTACGCCGGCGTGCCGATGCTGACTCTGCCGAT
AGCCTTCGACCAGCCGATCAACAGCCGGC-T-ATCGTCGACGAGTGGAAGGTTGGGTACAACCTCAAGGAGAAGGTCTGG
GGCGATGACGCCATCGGAAGAGATGAAATTGCTGGA-GGTGTTAATGGGCTTATGAATT---GTGACGACGGTGAGGGCG
CGAGGAGGAGAGCGTCTCTTATGAAAGAAGCTTCTCGTGCCGCGGTCGAAGTGGGTGGTTCATCGGACAGCGATTTCACG
TCTTTCATCAGTTACATTTCACGGCTCAATAACTGAAATGT---------------------------------------
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>chr1B_1993
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--GCCATTGGCCTGGCCCAGAGCAAGGTCAGGTTCCTGTGGGTGCTCCGCGACGCCTGTGCGGCTGTGCCGGCGTGCATG
ATTTGATCC------GTGAAAGCGACTGTGCGATCGTCCCGTGGTGTGACTAGCTCAAGGTGTTGTGCCATCCTTCAGTT
GGTGGGTTCATCACCCACTGCGGAATGAACTCGACGCTGGAGGCGCTGTACGCCGGCGTGCCGATGCTGACTCTGCCGAT
AGCTTTCGACCAGCCGATCAATGGATCATT-----GTCGATGAGTGGAAGGTTGGGTACAACCTCAAGGAGAAGGTCCGG
GGCGATGGCGTCATCGGAAGAGATCACATTGCTGAAGGGTGTTAAGAGGCTCATGAATT---GTGATGACGGTGAGGGCT
CGAGGAGGAGAGCGTCGCTTATGAAAGAGGCTTCTCGCGCCACGGTCGAAGTGGGTGGTTCATCGGACAGCGATATCACG
TCTTTCATCAATTACATTTTGCGGCTCAATAACTGAAATGTCGTTAGAG-------------------------------
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---------
>SNPs
S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SSS-----S-
S---------------S----S----SSS------S----S-----S--S--SS-----S---S-------S-SS---S-
--------------------------S-S------------------------S--------------------------
S-------------------------------------------------------------------S-----------
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--------------------------------------S---S-------------------------------------
---------S-----S---S------------------------------------------------------------
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---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-------------------------S----S-------------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-------------------------------SSS---------------------------S-SS--S--------S---
----S-----------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
----S-------------------------------------------------S------------------S------
-----------------------------------------------------------------------------S--
------------------------------S----------SS-------S--SSSSS----------SSSS--S--SSS
S-SSS-------------S-----S-S-S-S----------SS---------------------S-----------S---
-----------------SSS------------------------------------------------------------
--------------------------------------------------------------------------------
----------S--------S--------------------------S---------------------------------
------------------S-------------------------------------------------------------
-------------------------------------------------------------S--------S-S-------
-------S--------S--------------------S--------S---------------------S-----------
SS---SSSSSSSSSS-------------------S-----S--------------------------------S------
--------------------S-----------------------------------------------------------
-----------------------------S-------------------------------------------S------
-------------------------------------------------------S------------------------
-------------------------------------------S------------------------------------
-------------------------------------------------------------------------S---S--
------------------------------S----------------------S------------------------S-
---------------------------------------------------------S--------------------S-
--------------------------------------------------------------------------------
------------------------------------------------------S---------S---------------
-----------------------------------------------------------------S--------------
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--------------------------------------------------------------------------------
S---------------------------------------------------------------S----S----------
S-------------------------------S----------------S--S------------------------SS-
SSSSS---------------S-----------------------------------------------------S---S-
---S--S---------S-S---------------------------S----------------S----S--S--------
-S--------------------------------------------------------------------------S-S-
------------------------------------------------------------S----S-SS-----------
---------
>forward_2439
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-------------------GACCGTTGCAACTCATGTGG-----------------------------------------
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>reverse_3258
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---------------------------------------------------------CCTCGTCCCTCTCGTAGCTA---
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>forward_2725
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-----------------------------------------------------------------TCTCTCGCTTCAAGG
TTCCG---------------------------------------------------------------------------
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>reverse_4204
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-------------------------------------------TGTTGAAGTGGGTGGTTCCT-----------------
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>forward_4136
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------------------------------------AACCGTGAAGAGGCTGATGG------------------------
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>reverse_5346
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-----------------------------------------------------------------CATGTGCGGGATGAG
GATGG----
