Multiple sequence alignment - TraesCS1A01G309100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G309100 chr1A 100.000 3067 0 0 1 3067 499928619 499925553 0.000000e+00 5664
1 TraesCS1A01G309100 chr1A 82.945 1331 135 46 399 1672 499809708 499808413 0.000000e+00 1116
2 TraesCS1A01G309100 chr1A 84.028 576 35 21 1776 2324 499808230 499807685 4.570000e-138 501
3 TraesCS1A01G309100 chr1A 91.262 103 8 1 1 102 565354932 565354830 4.120000e-29 139
4 TraesCS1A01G309100 chr1D 90.075 1340 76 31 400 1696 404261582 404260257 0.000000e+00 1685
5 TraesCS1A01G309100 chr1D 82.291 1327 116 56 399 1663 404240548 404239279 0.000000e+00 1038
6 TraesCS1A01G309100 chr1D 88.196 449 21 13 1780 2217 404239175 404238748 9.810000e-140 507
7 TraesCS1A01G309100 chr1D 87.980 391 22 8 1779 2169 404260214 404259849 3.630000e-119 438
8 TraesCS1A01G309100 chr1D 86.920 237 23 5 2502 2733 404259659 404259426 3.030000e-65 259
9 TraesCS1A01G309100 chr1D 92.121 165 10 3 2446 2607 404238443 404238279 2.380000e-56 230
10 TraesCS1A01G309100 chr1D 89.634 164 15 2 170 333 493221758 493221919 1.110000e-49 207
11 TraesCS1A01G309100 chr1D 82.412 199 21 6 2639 2836 404236575 404236390 8.800000e-36 161
12 TraesCS1A01G309100 chr1B 82.294 1683 178 65 590 2217 543741404 543739787 0.000000e+00 1347
13 TraesCS1A01G309100 chr1B 78.825 2229 202 125 481 2590 543581685 543579608 0.000000e+00 1253
14 TraesCS1A01G309100 chr1B 85.934 391 26 12 2284 2650 543739784 543739399 1.030000e-104 390
15 TraesCS1A01G309100 chr1B 90.123 162 15 1 171 332 40182193 40182353 3.100000e-50 209
16 TraesCS1A01G309100 chr1B 89.091 110 11 1 1 109 247087187 247087078 5.330000e-28 135
17 TraesCS1A01G309100 chr7B 89.157 166 16 2 168 332 339685605 339685441 4.010000e-49 206
18 TraesCS1A01G309100 chr7B 88.623 167 18 1 166 332 443741562 443741397 5.190000e-48 202
19 TraesCS1A01G309100 chr7B 89.024 164 17 1 170 333 460995606 460995768 5.190000e-48 202
20 TraesCS1A01G309100 chr7A 89.091 165 16 2 170 333 606634147 606634310 1.440000e-48 204
21 TraesCS1A01G309100 chr7A 91.589 107 7 2 1 106 610088887 610088992 2.460000e-31 147
22 TraesCS1A01G309100 chr7A 90.741 108 8 2 1 107 671128884 671128990 3.190000e-30 143
23 TraesCS1A01G309100 chr5A 88.554 166 18 1 167 332 653299437 653299601 1.870000e-47 200
24 TraesCS1A01G309100 chr5A 92.453 106 7 1 1 105 436885215 436885110 1.910000e-32 150
25 TraesCS1A01G309100 chr5A 92.233 103 7 1 1 102 645397416 645397314 8.860000e-31 145
26 TraesCS1A01G309100 chr3D 87.719 171 20 1 162 332 552772347 552772516 6.710000e-47 198
27 TraesCS1A01G309100 chr6A 87.719 171 18 3 164 333 27786394 27786226 2.410000e-46 196
28 TraesCS1A01G309100 chr5B 93.396 106 6 1 1 105 478325177 478325072 4.090000e-34 156
29 TraesCS1A01G309100 chr7D 91.262 103 8 1 1 102 169823789 169823891 4.120000e-29 139
30 TraesCS1A01G309100 chr4A 90.291 103 9 1 1 102 46310352 46310454 1.920000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G309100 chr1A 499925553 499928619 3066 True 5664.0 5664 100.0000 1 3067 1 chr1A.!!$R1 3066
1 TraesCS1A01G309100 chr1A 499807685 499809708 2023 True 808.5 1116 83.4865 399 2324 2 chr1A.!!$R3 1925
2 TraesCS1A01G309100 chr1D 404259426 404261582 2156 True 794.0 1685 88.3250 400 2733 3 chr1D.!!$R2 2333
3 TraesCS1A01G309100 chr1D 404236390 404240548 4158 True 484.0 1038 86.2550 399 2836 4 chr1D.!!$R1 2437
4 TraesCS1A01G309100 chr1B 543579608 543581685 2077 True 1253.0 1253 78.8250 481 2590 1 chr1B.!!$R2 2109
5 TraesCS1A01G309100 chr1B 543739399 543741404 2005 True 868.5 1347 84.1140 590 2650 2 chr1B.!!$R3 2060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.323302 TTTGCTCCGCATGTAGTCCA 59.677 50.0 0.0 0.0 38.76 4.02 F
1710 1890 0.035317 TCAAGCGTCCAGTTGCTCAT 59.965 50.0 0.0 0.0 41.46 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2214 0.035881 TGCTTGAGAGGTTCCTGCAG 59.964 55.0 6.78 6.78 32.07 4.41 R
2777 4901 0.039798 CACAGCACAACAGACATGCC 60.040 55.0 0.00 0.00 40.33 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.969816 CTTTGACCAAAGCTAATACGTGG 58.030 43.478 9.25 0.00 40.94 4.94
79 80 3.965379 TGACCAAAGCTAATACGTGGA 57.035 42.857 0.00 0.00 33.39 4.02
80 81 3.857052 TGACCAAAGCTAATACGTGGAG 58.143 45.455 0.00 0.00 33.39 3.86
81 82 3.259876 TGACCAAAGCTAATACGTGGAGT 59.740 43.478 0.00 0.00 33.39 3.85
82 83 4.463539 TGACCAAAGCTAATACGTGGAGTA 59.536 41.667 0.00 0.00 40.03 2.59
83 84 5.047164 TGACCAAAGCTAATACGTGGAGTAA 60.047 40.000 0.00 0.00 39.04 2.24
84 85 5.797051 ACCAAAGCTAATACGTGGAGTAAA 58.203 37.500 0.00 0.00 39.04 2.01
85 86 6.412214 ACCAAAGCTAATACGTGGAGTAAAT 58.588 36.000 0.00 0.00 39.04 1.40
86 87 7.558604 ACCAAAGCTAATACGTGGAGTAAATA 58.441 34.615 0.00 0.00 39.04 1.40
87 88 8.042515 ACCAAAGCTAATACGTGGAGTAAATAA 58.957 33.333 0.00 0.00 39.04 1.40
88 89 8.548721 CCAAAGCTAATACGTGGAGTAAATAAG 58.451 37.037 0.00 0.00 39.04 1.73
89 90 9.309516 CAAAGCTAATACGTGGAGTAAATAAGA 57.690 33.333 0.00 0.00 39.04 2.10
90 91 9.880157 AAAGCTAATACGTGGAGTAAATAAGAA 57.120 29.630 0.00 0.00 39.04 2.52
91 92 8.868635 AGCTAATACGTGGAGTAAATAAGAAC 57.131 34.615 0.00 0.00 39.04 3.01
92 93 7.646922 AGCTAATACGTGGAGTAAATAAGAACG 59.353 37.037 0.00 0.00 39.04 3.95
93 94 7.096312 GCTAATACGTGGAGTAAATAAGAACGG 60.096 40.741 0.00 0.00 39.04 4.44
94 95 4.789012 ACGTGGAGTAAATAAGAACGGA 57.211 40.909 0.00 0.00 34.06 4.69
95 96 5.334724 ACGTGGAGTAAATAAGAACGGAT 57.665 39.130 0.00 0.00 34.06 4.18
96 97 5.107133 ACGTGGAGTAAATAAGAACGGATG 58.893 41.667 0.00 0.00 34.06 3.51
97 98 4.506654 CGTGGAGTAAATAAGAACGGATGG 59.493 45.833 0.00 0.00 0.00 3.51
98 99 5.667466 GTGGAGTAAATAAGAACGGATGGA 58.333 41.667 0.00 0.00 0.00 3.41
99 100 5.753921 GTGGAGTAAATAAGAACGGATGGAG 59.246 44.000 0.00 0.00 0.00 3.86
100 101 5.424252 TGGAGTAAATAAGAACGGATGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
101 102 6.608405 TGGAGTAAATAAGAACGGATGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
102 103 7.146648 GGAGTAAATAAGAACGGATGGAGTAG 58.853 42.308 0.00 0.00 0.00 2.57
103 104 7.201893 GGAGTAAATAAGAACGGATGGAGTAGT 60.202 40.741 0.00 0.00 0.00 2.73
104 105 8.075761 AGTAAATAAGAACGGATGGAGTAGTT 57.924 34.615 0.00 0.00 0.00 2.24
105 106 9.193806 AGTAAATAAGAACGGATGGAGTAGTTA 57.806 33.333 0.00 0.00 0.00 2.24
106 107 9.978044 GTAAATAAGAACGGATGGAGTAGTTAT 57.022 33.333 0.00 0.00 0.00 1.89
108 109 9.901172 AAATAAGAACGGATGGAGTAGTTATTT 57.099 29.630 0.00 0.00 31.67 1.40
109 110 9.901172 AATAAGAACGGATGGAGTAGTTATTTT 57.099 29.630 0.00 0.00 31.67 1.82
111 112 8.943909 AAGAACGGATGGAGTAGTTATTTTAG 57.056 34.615 0.00 0.00 0.00 1.85
112 113 8.075761 AGAACGGATGGAGTAGTTATTTTAGT 57.924 34.615 0.00 0.00 0.00 2.24
113 114 8.537858 AGAACGGATGGAGTAGTTATTTTAGTT 58.462 33.333 0.00 0.00 0.00 2.24
114 115 9.807649 GAACGGATGGAGTAGTTATTTTAGTTA 57.192 33.333 0.00 0.00 0.00 2.24
154 155 7.400599 ACATAGATGTTCGGTACTGTAGAAA 57.599 36.000 0.64 0.00 37.90 2.52
155 156 7.833786 ACATAGATGTTCGGTACTGTAGAAAA 58.166 34.615 0.64 0.00 37.90 2.29
156 157 8.308931 ACATAGATGTTCGGTACTGTAGAAAAA 58.691 33.333 0.64 0.00 37.90 1.94
157 158 8.808529 CATAGATGTTCGGTACTGTAGAAAAAG 58.191 37.037 0.64 0.00 0.00 2.27
158 159 6.989659 AGATGTTCGGTACTGTAGAAAAAGA 58.010 36.000 0.64 0.00 0.00 2.52
159 160 7.439381 AGATGTTCGGTACTGTAGAAAAAGAA 58.561 34.615 0.64 0.00 0.00 2.52
160 161 7.929785 AGATGTTCGGTACTGTAGAAAAAGAAA 59.070 33.333 0.64 0.00 0.00 2.52
161 162 8.617290 ATGTTCGGTACTGTAGAAAAAGAAAT 57.383 30.769 0.64 0.00 0.00 2.17
162 163 8.441312 TGTTCGGTACTGTAGAAAAAGAAATT 57.559 30.769 0.64 0.00 0.00 1.82
163 164 9.545105 TGTTCGGTACTGTAGAAAAAGAAATTA 57.455 29.630 0.64 0.00 0.00 1.40
164 165 9.803130 GTTCGGTACTGTAGAAAAAGAAATTAC 57.197 33.333 0.64 0.00 0.00 1.89
165 166 9.768662 TTCGGTACTGTAGAAAAAGAAATTACT 57.231 29.630 0.64 0.00 0.00 2.24
178 179 9.682465 AAAAAGAAATTACTATGTACTCCCTCC 57.318 33.333 0.00 0.00 0.00 4.30
179 180 7.989947 AAGAAATTACTATGTACTCCCTCCA 57.010 36.000 0.00 0.00 0.00 3.86
180 181 8.568617 AAGAAATTACTATGTACTCCCTCCAT 57.431 34.615 0.00 0.00 0.00 3.41
181 182 8.568617 AGAAATTACTATGTACTCCCTCCATT 57.431 34.615 0.00 0.00 0.00 3.16
182 183 8.652290 AGAAATTACTATGTACTCCCTCCATTC 58.348 37.037 0.00 0.00 0.00 2.67
183 184 6.936968 ATTACTATGTACTCCCTCCATTCC 57.063 41.667 0.00 0.00 0.00 3.01
184 185 4.561254 ACTATGTACTCCCTCCATTCCT 57.439 45.455 0.00 0.00 0.00 3.36
185 186 5.681494 ACTATGTACTCCCTCCATTCCTA 57.319 43.478 0.00 0.00 0.00 2.94
186 187 6.039415 ACTATGTACTCCCTCCATTCCTAA 57.961 41.667 0.00 0.00 0.00 2.69
187 188 6.449956 ACTATGTACTCCCTCCATTCCTAAA 58.550 40.000 0.00 0.00 0.00 1.85
188 189 7.082972 ACTATGTACTCCCTCCATTCCTAAAT 58.917 38.462 0.00 0.00 0.00 1.40
189 190 8.239478 ACTATGTACTCCCTCCATTCCTAAATA 58.761 37.037 0.00 0.00 0.00 1.40
190 191 9.273137 CTATGTACTCCCTCCATTCCTAAATAT 57.727 37.037 0.00 0.00 0.00 1.28
192 193 9.805204 ATGTACTCCCTCCATTCCTAAATATAT 57.195 33.333 0.00 0.00 0.00 0.86
193 194 9.046846 TGTACTCCCTCCATTCCTAAATATATG 57.953 37.037 0.00 0.00 0.00 1.78
194 195 9.047947 GTACTCCCTCCATTCCTAAATATATGT 57.952 37.037 0.00 0.00 0.00 2.29
196 197 9.805204 ACTCCCTCCATTCCTAAATATATGTAT 57.195 33.333 0.00 0.00 0.00 2.29
271 272 6.734104 AGACTGTAGATTCACTCATTTTGC 57.266 37.500 0.00 0.00 0.00 3.68
272 273 6.471146 AGACTGTAGATTCACTCATTTTGCT 58.529 36.000 0.00 0.00 0.00 3.91
273 274 6.593382 AGACTGTAGATTCACTCATTTTGCTC 59.407 38.462 0.00 0.00 0.00 4.26
274 275 5.645497 ACTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 0.00 4.70
275 276 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
276 277 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
277 278 1.603456 TTCACTCATTTTGCTCCGCA 58.397 45.000 0.00 0.00 36.47 5.69
278 279 1.825090 TCACTCATTTTGCTCCGCAT 58.175 45.000 0.00 0.00 38.76 4.73
279 280 1.469703 TCACTCATTTTGCTCCGCATG 59.530 47.619 0.00 0.00 38.76 4.06
280 281 1.200716 CACTCATTTTGCTCCGCATGT 59.799 47.619 0.00 0.00 38.76 3.21
281 282 2.419673 CACTCATTTTGCTCCGCATGTA 59.580 45.455 0.00 0.00 38.76 2.29
282 283 2.679837 ACTCATTTTGCTCCGCATGTAG 59.320 45.455 0.00 0.00 38.76 2.74
283 284 2.679837 CTCATTTTGCTCCGCATGTAGT 59.320 45.455 0.00 0.00 38.76 2.73
284 285 2.677836 TCATTTTGCTCCGCATGTAGTC 59.322 45.455 0.00 0.00 38.76 2.59
285 286 1.448985 TTTTGCTCCGCATGTAGTCC 58.551 50.000 0.00 0.00 38.76 3.85
286 287 0.323302 TTTGCTCCGCATGTAGTCCA 59.677 50.000 0.00 0.00 38.76 4.02
287 288 0.541392 TTGCTCCGCATGTAGTCCAT 59.459 50.000 0.00 0.00 38.76 3.41
288 289 1.408969 TGCTCCGCATGTAGTCCATA 58.591 50.000 0.00 0.00 31.71 2.74
289 290 1.970640 TGCTCCGCATGTAGTCCATAT 59.029 47.619 0.00 0.00 31.71 1.78
290 291 2.368548 TGCTCCGCATGTAGTCCATATT 59.631 45.455 0.00 0.00 31.71 1.28
291 292 2.738846 GCTCCGCATGTAGTCCATATTG 59.261 50.000 0.00 0.00 30.71 1.90
292 293 3.554960 GCTCCGCATGTAGTCCATATTGA 60.555 47.826 0.00 0.00 30.71 2.57
293 294 4.631131 CTCCGCATGTAGTCCATATTGAA 58.369 43.478 0.00 0.00 30.71 2.69
294 295 5.029807 TCCGCATGTAGTCCATATTGAAA 57.970 39.130 0.00 0.00 30.71 2.69
295 296 5.620206 TCCGCATGTAGTCCATATTGAAAT 58.380 37.500 0.00 0.00 30.71 2.17
296 297 6.764379 TCCGCATGTAGTCCATATTGAAATA 58.236 36.000 0.00 0.00 30.71 1.40
297 298 7.394016 TCCGCATGTAGTCCATATTGAAATAT 58.606 34.615 0.00 0.00 30.71 1.28
298 299 7.549134 TCCGCATGTAGTCCATATTGAAATATC 59.451 37.037 0.00 0.00 30.71 1.63
299 300 7.550551 CCGCATGTAGTCCATATTGAAATATCT 59.449 37.037 0.00 0.00 30.71 1.98
300 301 9.586435 CGCATGTAGTCCATATTGAAATATCTA 57.414 33.333 0.00 0.00 30.71 1.98
329 330 9.712305 AAGACTTATATTTACGAATGGATGGAG 57.288 33.333 0.00 0.00 0.00 3.86
330 331 8.871125 AGACTTATATTTACGAATGGATGGAGT 58.129 33.333 0.00 0.00 0.00 3.85
337 338 7.548196 TTTACGAATGGATGGAGTATTTCAC 57.452 36.000 0.00 0.00 0.00 3.18
338 339 4.451900 ACGAATGGATGGAGTATTTCACC 58.548 43.478 0.00 0.00 0.00 4.02
339 340 4.080582 ACGAATGGATGGAGTATTTCACCA 60.081 41.667 0.00 0.00 40.76 4.17
340 341 4.881273 CGAATGGATGGAGTATTTCACCAA 59.119 41.667 0.00 0.00 39.98 3.67
341 342 5.356751 CGAATGGATGGAGTATTTCACCAAA 59.643 40.000 0.00 0.00 39.98 3.28
342 343 6.127758 CGAATGGATGGAGTATTTCACCAAAA 60.128 38.462 0.00 0.00 39.98 2.44
343 344 7.416664 CGAATGGATGGAGTATTTCACCAAAAT 60.417 37.037 0.00 0.00 39.98 1.82
344 345 8.837099 AATGGATGGAGTATTTCACCAAAATA 57.163 30.769 0.00 0.00 39.98 1.40
345 346 9.438163 AATGGATGGAGTATTTCACCAAAATAT 57.562 29.630 0.00 0.00 40.89 1.28
358 359 8.690203 TTCACCAAAATATATACATGGACAGG 57.310 34.615 14.86 0.00 35.16 4.00
359 360 7.230747 TCACCAAAATATATACATGGACAGGG 58.769 38.462 14.86 0.00 35.16 4.45
360 361 7.073088 TCACCAAAATATATACATGGACAGGGA 59.927 37.037 14.86 5.21 35.16 4.20
361 362 7.890127 CACCAAAATATATACATGGACAGGGAT 59.110 37.037 14.86 0.00 35.16 3.85
362 363 9.122954 ACCAAAATATATACATGGACAGGGATA 57.877 33.333 14.86 0.00 35.16 2.59
369 370 6.875972 ATACATGGACAGGGATATAACTCC 57.124 41.667 0.00 0.00 34.31 3.85
370 371 4.566837 ACATGGACAGGGATATAACTCCA 58.433 43.478 0.00 0.00 37.01 3.86
371 372 5.165652 ACATGGACAGGGATATAACTCCAT 58.834 41.667 0.00 0.00 38.76 3.41
437 446 2.615447 AGATGCGTTGTAAGATGCCATG 59.385 45.455 0.00 0.00 0.00 3.66
452 461 4.219264 TGCCATGTTCACATATGACTCA 57.781 40.909 10.38 3.68 33.38 3.41
472 481 7.229306 TGACTCAGACAACAGAAATATTTTGCT 59.771 33.333 1.43 0.00 0.00 3.91
476 485 8.390354 TCAGACAACAGAAATATTTTGCTATCG 58.610 33.333 1.43 0.00 0.00 2.92
478 487 8.391106 AGACAACAGAAATATTTTGCTATCGAC 58.609 33.333 1.43 0.00 0.00 4.20
493 502 6.582636 TGCTATCGACTATTGTCCAAGATTT 58.417 36.000 1.57 0.00 39.94 2.17
496 505 7.852945 GCTATCGACTATTGTCCAAGATTTTTG 59.147 37.037 1.57 0.00 39.94 2.44
522 531 6.763135 AGGTTATATATGAAGCCATGCATACG 59.237 38.462 0.00 0.00 34.31 3.06
523 532 6.017934 GGTTATATATGAAGCCATGCATACGG 60.018 42.308 0.00 0.00 34.31 4.02
525 534 1.888215 ATGAAGCCATGCATACGGAG 58.112 50.000 7.24 0.00 0.00 4.63
526 535 0.815213 TGAAGCCATGCATACGGAGC 60.815 55.000 7.24 2.46 0.00 4.70
529 538 0.394216 AGCCATGCATACGGAGCAAA 60.394 50.000 7.24 0.00 46.27 3.68
530 539 0.455410 GCCATGCATACGGAGCAAAA 59.545 50.000 7.24 0.00 46.27 2.44
531 540 1.067516 GCCATGCATACGGAGCAAAAT 59.932 47.619 7.24 0.00 46.27 1.82
532 541 2.734670 CCATGCATACGGAGCAAAATG 58.265 47.619 0.00 0.00 46.27 2.32
559 585 3.637998 TGACTTCACGGAGTACACTTC 57.362 47.619 0.00 0.00 41.61 3.01
640 670 9.653287 CAACAGTTATATATGACCGGACATATT 57.347 33.333 33.74 24.84 41.67 1.28
654 684 6.040166 ACCGGACATATTACTCTAACAACGAT 59.960 38.462 9.46 0.00 0.00 3.73
676 706 6.037830 CGATGATAAGTCCAAATTAAACCGGT 59.962 38.462 0.00 0.00 0.00 5.28
677 707 6.503589 TGATAAGTCCAAATTAAACCGGTG 57.496 37.500 8.52 0.00 0.00 4.94
678 708 6.005198 TGATAAGTCCAAATTAAACCGGTGT 58.995 36.000 8.52 4.57 0.00 4.16
775 807 2.235898 GCCATTGGCCAAAACTTATCCA 59.764 45.455 24.71 0.00 44.06 3.41
777 809 4.626046 GCCATTGGCCAAAACTTATCCATT 60.626 41.667 24.71 0.00 44.06 3.16
789 821 1.102154 TATCCATTTTGGGCTGCACG 58.898 50.000 0.50 0.00 38.32 5.34
829 867 0.947244 CACAGTGTTGACAAGGAGGC 59.053 55.000 0.00 0.00 0.00 4.70
893 939 3.202373 AGCACCTTCCTTCCCCTATAAAC 59.798 47.826 0.00 0.00 0.00 2.01
942 1000 1.532868 GCTCGCAAGTTCACAAGTCAT 59.467 47.619 0.00 0.00 39.48 3.06
945 1003 4.667668 GCTCGCAAGTTCACAAGTCATAAG 60.668 45.833 0.00 0.00 39.48 1.73
1281 1372 4.262249 CGATCCTTCTTCCCTTCCATACTC 60.262 50.000 0.00 0.00 0.00 2.59
1287 1378 2.191981 TCCCTTCCATACTCCTTCCC 57.808 55.000 0.00 0.00 0.00 3.97
1300 1391 7.093289 CCATACTCCTTCCCTCGTATATTTCAT 60.093 40.741 0.00 0.00 0.00 2.57
1330 1421 0.528684 CGCCTCGTCTTCTTCATCCC 60.529 60.000 0.00 0.00 0.00 3.85
1427 1556 1.838112 ACTGTGAGCCTCTCTCTCTG 58.162 55.000 0.00 0.00 42.38 3.35
1663 1828 1.202627 GCTGTGAGTCCATGATCTCCC 60.203 57.143 12.26 4.42 0.00 4.30
1707 1887 1.388547 TTTTCAAGCGTCCAGTTGCT 58.611 45.000 0.00 0.00 44.97 3.91
1708 1888 0.944386 TTTCAAGCGTCCAGTTGCTC 59.056 50.000 0.00 0.00 41.46 4.26
1709 1889 0.179059 TTCAAGCGTCCAGTTGCTCA 60.179 50.000 0.00 0.00 41.46 4.26
1710 1890 0.035317 TCAAGCGTCCAGTTGCTCAT 59.965 50.000 0.00 0.00 41.46 2.90
1711 1891 1.275010 TCAAGCGTCCAGTTGCTCATA 59.725 47.619 0.00 0.00 41.46 2.15
1712 1892 1.662629 CAAGCGTCCAGTTGCTCATAG 59.337 52.381 0.00 0.00 41.46 2.23
1713 1893 0.898320 AGCGTCCAGTTGCTCATAGT 59.102 50.000 0.00 0.00 36.53 2.12
1715 1895 1.661112 GCGTCCAGTTGCTCATAGTTC 59.339 52.381 0.00 0.00 0.00 3.01
1721 1901 4.160439 TCCAGTTGCTCATAGTTCCTACAG 59.840 45.833 0.00 0.00 0.00 2.74
1734 1989 5.751586 AGTTCCTACAGAAACAAGTTTGGA 58.248 37.500 2.45 0.67 35.85 3.53
1741 1996 6.136541 ACAGAAACAAGTTTGGATCTGAAC 57.863 37.500 23.85 0.00 42.55 3.18
1742 1997 5.652014 ACAGAAACAAGTTTGGATCTGAACA 59.348 36.000 23.85 0.00 42.55 3.18
1743 1998 6.322201 ACAGAAACAAGTTTGGATCTGAACAT 59.678 34.615 23.85 8.82 42.55 2.71
1745 2000 7.707893 CAGAAACAAGTTTGGATCTGAACATTT 59.292 33.333 17.26 9.63 42.55 2.32
1747 2002 9.696917 GAAACAAGTTTGGATCTGAACATTTAT 57.303 29.630 2.45 0.00 32.11 1.40
1770 2025 9.632638 TTATATATACCCTCCTAATACACGGAC 57.367 37.037 0.00 0.00 0.00 4.79
1771 2026 2.842645 ACCCTCCTAATACACGGACT 57.157 50.000 0.00 0.00 0.00 3.85
1772 2027 2.385803 ACCCTCCTAATACACGGACTG 58.614 52.381 0.00 0.00 0.00 3.51
1773 2028 1.068741 CCCTCCTAATACACGGACTGC 59.931 57.143 0.00 0.00 0.00 4.40
1774 2029 1.754803 CCTCCTAATACACGGACTGCA 59.245 52.381 0.00 0.00 0.00 4.41
1798 2053 0.550914 AGGCACCTTCAACAGAACCA 59.449 50.000 0.00 0.00 0.00 3.67
1923 2182 5.691754 CGACGATCAATTAATCCAGTGATCA 59.308 40.000 20.19 0.00 44.30 2.92
1952 2211 1.585297 TCGTTTTCCCGTCCTGTTTC 58.415 50.000 0.00 0.00 0.00 2.78
1954 2213 1.585297 GTTTTCCCGTCCTGTTTCGA 58.415 50.000 0.00 0.00 0.00 3.71
1955 2214 1.262417 GTTTTCCCGTCCTGTTTCGAC 59.738 52.381 0.00 0.00 0.00 4.20
1990 2249 2.741985 CAACGATCTGTGCGGCCA 60.742 61.111 2.24 0.00 0.00 5.36
2076 2335 1.725641 CAACTGCTAGACCGATGCAA 58.274 50.000 0.00 0.00 36.22 4.08
2078 2337 1.186200 ACTGCTAGACCGATGCAAGA 58.814 50.000 0.00 0.00 36.22 3.02
2079 2338 1.759445 ACTGCTAGACCGATGCAAGAT 59.241 47.619 0.00 0.00 36.22 2.40
2081 2340 0.864455 GCTAGACCGATGCAAGATGC 59.136 55.000 0.00 0.00 45.29 3.91
2119 2378 3.429822 CCGCCGGAGTGAAGAATAAACTA 60.430 47.826 5.05 0.00 0.00 2.24
2140 2406 6.446318 ACTAGCAGTACTACTACTACTAGCG 58.554 44.000 12.99 0.00 44.48 4.26
2181 2473 2.703798 GCCGGTTCATGCATGCACT 61.704 57.895 25.37 9.74 0.00 4.40
2201 2493 3.700038 ACTACTTAGGTGGATTCGTGAGG 59.300 47.826 0.00 0.00 0.00 3.86
2203 2495 1.831736 CTTAGGTGGATTCGTGAGGGT 59.168 52.381 0.00 0.00 0.00 4.34
2212 2504 4.225492 TGGATTCGTGAGGGTGGTTAATTA 59.775 41.667 0.00 0.00 0.00 1.40
2213 2505 4.814771 GGATTCGTGAGGGTGGTTAATTAG 59.185 45.833 0.00 0.00 0.00 1.73
2214 2506 3.255969 TCGTGAGGGTGGTTAATTAGC 57.744 47.619 0.00 0.00 0.00 3.09
2215 2507 2.835764 TCGTGAGGGTGGTTAATTAGCT 59.164 45.455 0.00 0.00 0.00 3.32
2216 2508 2.936498 CGTGAGGGTGGTTAATTAGCTG 59.064 50.000 0.00 0.00 0.00 4.24
2217 2509 3.369052 CGTGAGGGTGGTTAATTAGCTGA 60.369 47.826 0.00 0.00 0.00 4.26
2224 2553 1.950216 GGTTAATTAGCTGAGCAGGCC 59.050 52.381 7.39 0.00 0.00 5.19
2367 2761 1.268948 TGCTCTGCTCGATCGAATCTG 60.269 52.381 19.92 16.23 0.00 2.90
2373 2767 1.514811 GCTCGATCGAATCTGTTCACG 59.485 52.381 19.92 4.32 33.86 4.35
2412 2846 1.372997 TTCTCTGTTCCTGTCGCGC 60.373 57.895 0.00 0.00 0.00 6.86
2415 2849 3.036084 CTGTTCCTGTCGCGCGTT 61.036 61.111 30.98 0.00 0.00 4.84
2428 2862 4.255126 GCGTTCAGTACCGCTTCA 57.745 55.556 6.94 0.00 46.08 3.02
2429 2863 2.524300 GCGTTCAGTACCGCTTCAA 58.476 52.632 6.94 0.00 46.08 2.69
2430 2864 0.863144 GCGTTCAGTACCGCTTCAAA 59.137 50.000 6.94 0.00 46.08 2.69
2467 2901 8.554835 TGATCACAGGTCAAATTTAACGAATA 57.445 30.769 0.00 0.00 0.00 1.75
2618 3055 4.909695 ACTTGGTAGTACAGTACCCCTTTT 59.090 41.667 14.99 0.00 41.79 2.27
2668 4791 1.167851 GAGTTAGCAGCCATTGTGCA 58.832 50.000 2.55 0.00 43.82 4.57
2674 4797 0.528924 GCAGCCATTGTGCAATCAGA 59.471 50.000 0.00 0.00 40.86 3.27
2676 4799 1.135199 CAGCCATTGTGCAATCAGACC 60.135 52.381 0.00 0.00 0.00 3.85
2692 4815 2.413112 CAGACCGTGATGAACATGTGTC 59.587 50.000 0.00 0.00 36.69 3.67
2709 4832 8.125978 ACATGTGTCTTTTAATGAATGGATGT 57.874 30.769 0.00 0.00 0.00 3.06
2768 4891 3.357079 CAAAAGCCTCACGCGCCT 61.357 61.111 5.73 0.00 44.76 5.52
2769 4892 3.050275 AAAAGCCTCACGCGCCTC 61.050 61.111 5.73 0.00 44.76 4.70
2775 4899 2.507102 CTCACGCGCCTCGACAAT 60.507 61.111 5.73 0.00 41.67 2.71
2777 4901 1.202973 CTCACGCGCCTCGACAATAG 61.203 60.000 5.73 0.00 41.67 1.73
2787 4911 2.159043 CCTCGACAATAGGCATGTCTGT 60.159 50.000 10.89 0.00 43.93 3.41
2792 4916 2.489329 ACAATAGGCATGTCTGTTGTGC 59.511 45.455 33.16 0.87 43.88 4.57
2793 4917 2.751259 CAATAGGCATGTCTGTTGTGCT 59.249 45.455 24.05 0.00 38.83 4.40
2794 4918 1.812235 TAGGCATGTCTGTTGTGCTG 58.188 50.000 10.89 0.00 38.83 4.41
2795 4919 0.179009 AGGCATGTCTGTTGTGCTGT 60.179 50.000 0.00 0.00 38.83 4.40
2796 4920 0.039798 GGCATGTCTGTTGTGCTGTG 60.040 55.000 0.00 0.00 38.83 3.66
2797 4921 0.946528 GCATGTCTGTTGTGCTGTGA 59.053 50.000 0.00 0.00 36.02 3.58
2803 4927 2.874701 GTCTGTTGTGCTGTGAATCAGT 59.125 45.455 0.00 0.00 45.23 3.41
2804 4928 3.059325 GTCTGTTGTGCTGTGAATCAGTC 60.059 47.826 0.00 0.00 45.23 3.51
2820 4944 7.117812 GTGAATCAGTCGAGTCCTAAATTTTGA 59.882 37.037 0.00 0.00 35.34 2.69
2821 4945 6.969828 ATCAGTCGAGTCCTAAATTTTGAC 57.030 37.500 10.85 10.85 0.00 3.18
2838 4962 5.652744 TTTGACGTGAAAAGAGTAAGAGC 57.347 39.130 0.00 0.00 0.00 4.09
2839 4963 4.316205 TGACGTGAAAAGAGTAAGAGCA 57.684 40.909 0.00 0.00 0.00 4.26
2840 4964 4.883083 TGACGTGAAAAGAGTAAGAGCAT 58.117 39.130 0.00 0.00 0.00 3.79
2841 4965 4.923871 TGACGTGAAAAGAGTAAGAGCATC 59.076 41.667 0.00 0.00 0.00 3.91
2854 4978 1.960417 GAGCATCTTTAGCAGACCCC 58.040 55.000 0.00 0.00 32.83 4.95
2855 4979 0.179000 AGCATCTTTAGCAGACCCCG 59.821 55.000 0.00 0.00 32.83 5.73
2856 4980 0.107654 GCATCTTTAGCAGACCCCGT 60.108 55.000 0.00 0.00 32.83 5.28
2857 4981 1.656652 CATCTTTAGCAGACCCCGTG 58.343 55.000 0.00 0.00 32.83 4.94
2858 4982 1.066143 CATCTTTAGCAGACCCCGTGT 60.066 52.381 0.00 0.00 32.83 4.49
2859 4983 1.927487 TCTTTAGCAGACCCCGTGTA 58.073 50.000 0.00 0.00 0.00 2.90
2860 4984 2.250031 TCTTTAGCAGACCCCGTGTAA 58.750 47.619 0.00 0.00 0.00 2.41
2861 4985 2.835764 TCTTTAGCAGACCCCGTGTAAT 59.164 45.455 0.00 0.00 0.00 1.89
2862 4986 2.684001 TTAGCAGACCCCGTGTAATG 57.316 50.000 0.00 0.00 0.00 1.90
2863 4987 0.177141 TAGCAGACCCCGTGTAATGC 59.823 55.000 0.00 0.00 39.11 3.56
2864 4988 2.112815 GCAGACCCCGTGTAATGCC 61.113 63.158 0.00 0.00 34.98 4.40
2865 4989 1.813753 CAGACCCCGTGTAATGCCG 60.814 63.158 0.00 0.00 0.00 5.69
2866 4990 1.985662 AGACCCCGTGTAATGCCGA 60.986 57.895 0.00 0.00 0.00 5.54
2867 4991 1.145377 GACCCCGTGTAATGCCGAT 59.855 57.895 0.00 0.00 0.00 4.18
2868 4992 0.878961 GACCCCGTGTAATGCCGATC 60.879 60.000 0.00 0.00 0.00 3.69
2869 4993 1.597027 CCCCGTGTAATGCCGATCC 60.597 63.158 0.00 0.00 0.00 3.36
2870 4994 1.145156 CCCGTGTAATGCCGATCCA 59.855 57.895 0.00 0.00 0.00 3.41
2871 4995 1.157870 CCCGTGTAATGCCGATCCAC 61.158 60.000 0.00 0.00 0.00 4.02
2872 4996 0.461163 CCGTGTAATGCCGATCCACA 60.461 55.000 0.00 0.00 0.00 4.17
2873 4997 1.364721 CGTGTAATGCCGATCCACAA 58.635 50.000 0.00 0.00 0.00 3.33
2874 4998 1.735018 CGTGTAATGCCGATCCACAAA 59.265 47.619 0.00 0.00 0.00 2.83
2875 4999 2.160615 CGTGTAATGCCGATCCACAAAA 59.839 45.455 0.00 0.00 0.00 2.44
2876 5000 3.181501 CGTGTAATGCCGATCCACAAAAT 60.182 43.478 0.00 0.00 0.00 1.82
2877 5001 4.104776 GTGTAATGCCGATCCACAAAATG 58.895 43.478 0.00 0.00 0.00 2.32
2878 5002 2.298411 AATGCCGATCCACAAAATGC 57.702 45.000 0.00 0.00 0.00 3.56
2879 5003 0.101040 ATGCCGATCCACAAAATGCG 59.899 50.000 0.00 0.00 0.00 4.73
2880 5004 1.240641 TGCCGATCCACAAAATGCGT 61.241 50.000 0.00 0.00 0.00 5.24
2881 5005 0.109319 GCCGATCCACAAAATGCGTT 60.109 50.000 0.00 0.00 0.00 4.84
2882 5006 1.668628 GCCGATCCACAAAATGCGTTT 60.669 47.619 0.00 0.00 0.00 3.60
2883 5007 2.414824 GCCGATCCACAAAATGCGTTTA 60.415 45.455 3.90 0.00 0.00 2.01
2884 5008 3.733684 GCCGATCCACAAAATGCGTTTAT 60.734 43.478 3.90 0.00 0.00 1.40
2885 5009 4.496673 GCCGATCCACAAAATGCGTTTATA 60.497 41.667 3.90 0.00 0.00 0.98
2886 5010 5.204833 CCGATCCACAAAATGCGTTTATAG 58.795 41.667 3.90 0.88 0.00 1.31
2887 5011 5.220777 CCGATCCACAAAATGCGTTTATAGT 60.221 40.000 3.90 1.51 0.00 2.12
2888 5012 6.255215 CGATCCACAAAATGCGTTTATAGTT 58.745 36.000 3.90 0.00 0.00 2.24
2889 5013 6.410914 CGATCCACAAAATGCGTTTATAGTTC 59.589 38.462 3.90 0.00 0.00 3.01
2890 5014 5.623335 TCCACAAAATGCGTTTATAGTTCG 58.377 37.500 3.90 0.00 0.00 3.95
2900 5024 6.230460 GCGTTTATAGTTCGCTGAAAAATG 57.770 37.500 9.75 0.00 45.29 2.32
2901 5025 5.227184 GCGTTTATAGTTCGCTGAAAAATGG 59.773 40.000 9.75 0.00 45.29 3.16
2902 5026 6.539324 CGTTTATAGTTCGCTGAAAAATGGA 58.461 36.000 0.00 0.00 0.00 3.41
2903 5027 7.186804 CGTTTATAGTTCGCTGAAAAATGGAT 58.813 34.615 0.00 0.00 0.00 3.41
2904 5028 7.696453 CGTTTATAGTTCGCTGAAAAATGGATT 59.304 33.333 0.00 0.00 0.00 3.01
2905 5029 9.353999 GTTTATAGTTCGCTGAAAAATGGATTT 57.646 29.630 0.00 0.00 0.00 2.17
2906 5030 8.909708 TTATAGTTCGCTGAAAAATGGATTTG 57.090 30.769 0.00 0.00 0.00 2.32
2907 5031 3.989817 AGTTCGCTGAAAAATGGATTTGC 59.010 39.130 0.00 0.00 0.00 3.68
2908 5032 2.594321 TCGCTGAAAAATGGATTTGCG 58.406 42.857 7.76 7.76 38.78 4.85
2909 5033 1.655099 CGCTGAAAAATGGATTTGCGG 59.345 47.619 0.00 0.47 35.89 5.69
2910 5034 2.001872 GCTGAAAAATGGATTTGCGGG 58.998 47.619 0.00 0.00 33.95 6.13
2911 5035 2.612721 GCTGAAAAATGGATTTGCGGGT 60.613 45.455 0.00 0.00 33.95 5.28
2912 5036 3.253230 CTGAAAAATGGATTTGCGGGTC 58.747 45.455 0.00 0.00 30.17 4.46
2913 5037 2.258755 GAAAAATGGATTTGCGGGTCG 58.741 47.619 0.00 0.00 0.00 4.79
2914 5038 1.540267 AAAATGGATTTGCGGGTCGA 58.460 45.000 0.00 0.00 0.00 4.20
2915 5039 0.808755 AAATGGATTTGCGGGTCGAC 59.191 50.000 7.13 7.13 0.00 4.20
2916 5040 0.322098 AATGGATTTGCGGGTCGACA 60.322 50.000 18.91 0.00 0.00 4.35
2917 5041 1.024579 ATGGATTTGCGGGTCGACAC 61.025 55.000 18.91 13.91 0.00 3.67
2919 5043 2.736682 GATTTGCGGGTCGACACGG 61.737 63.158 38.17 21.71 44.19 4.94
2920 5044 3.524648 ATTTGCGGGTCGACACGGT 62.525 57.895 38.17 5.32 44.19 4.83
2921 5045 4.953868 TTGCGGGTCGACACGGTG 62.954 66.667 38.17 14.49 44.19 4.94
2925 5049 3.681835 GGGTCGACACGGTGCTCT 61.682 66.667 18.91 0.00 0.00 4.09
2926 5050 2.338984 GGTCGACACGGTGCTCTT 59.661 61.111 18.91 0.00 0.00 2.85
2927 5051 1.300697 GGTCGACACGGTGCTCTTT 60.301 57.895 18.91 0.00 0.00 2.52
2928 5052 0.878961 GGTCGACACGGTGCTCTTTT 60.879 55.000 18.91 0.00 0.00 2.27
2929 5053 1.603678 GGTCGACACGGTGCTCTTTTA 60.604 52.381 18.91 0.00 0.00 1.52
2930 5054 1.454653 GTCGACACGGTGCTCTTTTAC 59.545 52.381 11.55 0.00 0.00 2.01
2931 5055 1.067364 TCGACACGGTGCTCTTTTACA 59.933 47.619 8.30 0.00 0.00 2.41
2932 5056 1.455786 CGACACGGTGCTCTTTTACAG 59.544 52.381 8.30 0.00 0.00 2.74
2933 5057 1.798813 GACACGGTGCTCTTTTACAGG 59.201 52.381 8.30 0.00 0.00 4.00
2934 5058 1.140252 ACACGGTGCTCTTTTACAGGT 59.860 47.619 8.30 0.00 0.00 4.00
2935 5059 1.798813 CACGGTGCTCTTTTACAGGTC 59.201 52.381 0.00 0.00 0.00 3.85
2936 5060 1.414919 ACGGTGCTCTTTTACAGGTCA 59.585 47.619 0.00 0.00 0.00 4.02
2937 5061 2.069273 CGGTGCTCTTTTACAGGTCAG 58.931 52.381 0.00 0.00 0.00 3.51
2938 5062 1.807142 GGTGCTCTTTTACAGGTCAGC 59.193 52.381 0.00 0.00 0.00 4.26
2939 5063 2.551071 GGTGCTCTTTTACAGGTCAGCT 60.551 50.000 0.00 0.00 0.00 4.24
2940 5064 3.306780 GGTGCTCTTTTACAGGTCAGCTA 60.307 47.826 0.00 0.00 0.00 3.32
2941 5065 3.680458 GTGCTCTTTTACAGGTCAGCTAC 59.320 47.826 0.00 0.00 0.00 3.58
2942 5066 3.323691 TGCTCTTTTACAGGTCAGCTACA 59.676 43.478 0.00 0.00 0.00 2.74
2943 5067 3.680458 GCTCTTTTACAGGTCAGCTACAC 59.320 47.826 0.00 0.00 0.00 2.90
2944 5068 3.909430 TCTTTTACAGGTCAGCTACACG 58.091 45.455 0.00 0.00 0.00 4.49
2945 5069 2.736144 TTTACAGGTCAGCTACACGG 57.264 50.000 0.00 0.00 0.00 4.94
2946 5070 0.892755 TTACAGGTCAGCTACACGGG 59.107 55.000 0.00 0.00 0.00 5.28
2947 5071 0.968901 TACAGGTCAGCTACACGGGG 60.969 60.000 0.00 0.00 0.00 5.73
2948 5072 2.119832 AGGTCAGCTACACGGGGT 59.880 61.111 0.00 0.00 0.00 4.95
2949 5073 1.982938 AGGTCAGCTACACGGGGTC 60.983 63.158 0.00 0.00 0.00 4.46
2950 5074 1.982938 GGTCAGCTACACGGGGTCT 60.983 63.158 0.00 0.00 0.00 3.85
2951 5075 1.215647 GTCAGCTACACGGGGTCTG 59.784 63.158 0.00 0.00 0.00 3.51
2952 5076 2.125512 CAGCTACACGGGGTCTGC 60.126 66.667 0.00 0.00 0.00 4.26
2953 5077 2.283966 AGCTACACGGGGTCTGCT 60.284 61.111 5.19 5.19 35.49 4.24
2954 5078 2.184579 GCTACACGGGGTCTGCTC 59.815 66.667 0.00 0.00 0.00 4.26
2955 5079 2.490217 CTACACGGGGTCTGCTCG 59.510 66.667 0.00 0.00 0.00 5.03
2956 5080 3.064987 CTACACGGGGTCTGCTCGG 62.065 68.421 0.00 0.00 0.00 4.63
2980 5104 4.973055 CCCACGTCGACCCGCAAA 62.973 66.667 10.58 0.00 0.00 3.68
2981 5105 2.740826 CCACGTCGACCCGCAAAT 60.741 61.111 10.58 0.00 0.00 2.32
2982 5106 2.736682 CCACGTCGACCCGCAAATC 61.737 63.158 10.58 0.00 0.00 2.17
2983 5107 2.807895 ACGTCGACCCGCAAATCG 60.808 61.111 10.58 0.00 39.72 3.34
2984 5108 2.505337 CGTCGACCCGCAAATCGA 60.505 61.111 10.58 0.00 44.68 3.59
2986 5110 4.677407 TCGACCCGCAAATCGAAA 57.323 50.000 0.00 0.00 43.97 3.46
2987 5111 2.915775 TCGACCCGCAAATCGAAAA 58.084 47.368 0.00 0.00 43.97 2.29
2988 5112 0.513820 TCGACCCGCAAATCGAAAAC 59.486 50.000 0.00 0.00 43.97 2.43
2989 5113 0.453782 CGACCCGCAAATCGAAAACC 60.454 55.000 0.00 0.00 40.86 3.27
2990 5114 0.109458 GACCCGCAAATCGAAAACCC 60.109 55.000 0.00 0.00 41.67 4.11
2991 5115 1.214325 CCCGCAAATCGAAAACCCC 59.786 57.895 0.00 0.00 41.67 4.95
2992 5116 1.154112 CCGCAAATCGAAAACCCCG 60.154 57.895 0.00 0.00 41.67 5.73
2993 5117 1.799916 CGCAAATCGAAAACCCCGC 60.800 57.895 0.00 0.00 41.67 6.13
2994 5118 1.287503 GCAAATCGAAAACCCCGCA 59.712 52.632 0.00 0.00 0.00 5.69
2995 5119 0.108851 GCAAATCGAAAACCCCGCAT 60.109 50.000 0.00 0.00 0.00 4.73
2996 5120 1.133407 GCAAATCGAAAACCCCGCATA 59.867 47.619 0.00 0.00 0.00 3.14
2997 5121 2.416162 GCAAATCGAAAACCCCGCATAA 60.416 45.455 0.00 0.00 0.00 1.90
2998 5122 3.434637 CAAATCGAAAACCCCGCATAAG 58.565 45.455 0.00 0.00 0.00 1.73
2999 5123 1.021968 ATCGAAAACCCCGCATAAGC 58.978 50.000 0.00 0.00 37.42 3.09
3012 5136 2.104144 GCATAAGCGAATTTGACAGCG 58.896 47.619 0.00 0.00 34.34 5.18
3013 5137 2.223021 GCATAAGCGAATTTGACAGCGA 60.223 45.455 0.00 0.00 34.34 4.93
3014 5138 3.546815 GCATAAGCGAATTTGACAGCGAT 60.547 43.478 0.00 0.00 34.34 4.58
3015 5139 4.591202 CATAAGCGAATTTGACAGCGATT 58.409 39.130 0.00 0.00 36.32 3.34
3016 5140 3.559238 AAGCGAATTTGACAGCGATTT 57.441 38.095 0.00 0.00 34.34 2.17
3017 5141 3.122937 AGCGAATTTGACAGCGATTTC 57.877 42.857 0.00 0.00 34.34 2.17
3018 5142 2.483877 AGCGAATTTGACAGCGATTTCA 59.516 40.909 0.00 0.00 34.34 2.69
3019 5143 3.058293 AGCGAATTTGACAGCGATTTCAA 60.058 39.130 0.00 0.00 34.34 2.69
3020 5144 3.058129 GCGAATTTGACAGCGATTTCAAC 59.942 43.478 1.02 0.00 31.42 3.18
3021 5145 4.218265 CGAATTTGACAGCGATTTCAACA 58.782 39.130 1.02 0.00 31.42 3.33
3022 5146 4.674662 CGAATTTGACAGCGATTTCAACAA 59.325 37.500 1.02 0.00 31.42 2.83
3023 5147 5.343058 CGAATTTGACAGCGATTTCAACAAT 59.657 36.000 1.02 0.00 31.42 2.71
3024 5148 6.129115 CGAATTTGACAGCGATTTCAACAATT 60.129 34.615 1.02 0.69 31.42 2.32
3025 5149 5.886715 TTTGACAGCGATTTCAACAATTG 57.113 34.783 1.02 3.24 31.42 2.32
3026 5150 4.827304 TGACAGCGATTTCAACAATTGA 57.173 36.364 13.59 0.00 38.04 2.57
3027 5151 4.786507 TGACAGCGATTTCAACAATTGAG 58.213 39.130 13.59 4.35 41.38 3.02
3028 5152 4.275689 TGACAGCGATTTCAACAATTGAGT 59.724 37.500 13.59 0.00 41.38 3.41
3029 5153 5.186996 ACAGCGATTTCAACAATTGAGTT 57.813 34.783 13.59 0.00 41.38 3.01
3030 5154 5.215160 ACAGCGATTTCAACAATTGAGTTC 58.785 37.500 13.59 0.00 41.38 3.01
3031 5155 5.214417 CAGCGATTTCAACAATTGAGTTCA 58.786 37.500 13.59 0.00 41.38 3.18
3032 5156 5.686841 CAGCGATTTCAACAATTGAGTTCAA 59.313 36.000 13.59 0.00 41.38 2.69
3058 5182 7.946918 TTTGAACAATAAATCATAGTTCGCG 57.053 32.000 0.00 0.00 40.95 5.87
3059 5183 5.498159 TGAACAATAAATCATAGTTCGCGC 58.502 37.500 0.00 0.00 40.95 6.86
3060 5184 4.115405 ACAATAAATCATAGTTCGCGCG 57.885 40.909 26.76 26.76 0.00 6.86
3061 5185 2.856091 ATAAATCATAGTTCGCGCGC 57.144 45.000 27.95 23.91 0.00 6.86
3062 5186 1.562017 TAAATCATAGTTCGCGCGCA 58.438 45.000 32.61 13.12 0.00 6.09
3063 5187 0.724549 AAATCATAGTTCGCGCGCAA 59.275 45.000 32.61 20.84 0.00 4.85
3064 5188 0.724549 AATCATAGTTCGCGCGCAAA 59.275 45.000 32.61 18.20 0.00 3.68
3065 5189 0.937304 ATCATAGTTCGCGCGCAAAT 59.063 45.000 32.61 23.61 0.00 2.32
3066 5190 1.562017 TCATAGTTCGCGCGCAAATA 58.438 45.000 32.61 24.86 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.643463 TCCACGTATTAGCTTTGGTCAAA 58.357 39.130 0.00 0.00 0.00 2.69
58 59 4.250464 CTCCACGTATTAGCTTTGGTCAA 58.750 43.478 0.00 0.00 0.00 3.18
59 60 3.259876 ACTCCACGTATTAGCTTTGGTCA 59.740 43.478 0.00 0.00 0.00 4.02
60 61 3.858247 ACTCCACGTATTAGCTTTGGTC 58.142 45.455 0.00 0.00 0.00 4.02
61 62 3.975168 ACTCCACGTATTAGCTTTGGT 57.025 42.857 0.00 0.00 0.00 3.67
62 63 6.920569 ATTTACTCCACGTATTAGCTTTGG 57.079 37.500 0.00 0.00 0.00 3.28
63 64 9.309516 TCTTATTTACTCCACGTATTAGCTTTG 57.690 33.333 0.00 0.00 0.00 2.77
64 65 9.880157 TTCTTATTTACTCCACGTATTAGCTTT 57.120 29.630 0.00 0.00 0.00 3.51
65 66 9.310716 GTTCTTATTTACTCCACGTATTAGCTT 57.689 33.333 0.00 0.00 0.00 3.74
66 67 7.646922 CGTTCTTATTTACTCCACGTATTAGCT 59.353 37.037 0.00 0.00 0.00 3.32
67 68 7.096312 CCGTTCTTATTTACTCCACGTATTAGC 60.096 40.741 0.00 0.00 0.00 3.09
68 69 8.131100 TCCGTTCTTATTTACTCCACGTATTAG 58.869 37.037 0.00 0.00 0.00 1.73
69 70 7.995289 TCCGTTCTTATTTACTCCACGTATTA 58.005 34.615 0.00 0.00 0.00 0.98
70 71 6.866480 TCCGTTCTTATTTACTCCACGTATT 58.134 36.000 0.00 0.00 0.00 1.89
71 72 6.455360 TCCGTTCTTATTTACTCCACGTAT 57.545 37.500 0.00 0.00 0.00 3.06
72 73 5.895636 TCCGTTCTTATTTACTCCACGTA 57.104 39.130 0.00 0.00 0.00 3.57
73 74 4.789012 TCCGTTCTTATTTACTCCACGT 57.211 40.909 0.00 0.00 0.00 4.49
74 75 4.506654 CCATCCGTTCTTATTTACTCCACG 59.493 45.833 0.00 0.00 0.00 4.94
75 76 5.667466 TCCATCCGTTCTTATTTACTCCAC 58.333 41.667 0.00 0.00 0.00 4.02
76 77 5.424252 ACTCCATCCGTTCTTATTTACTCCA 59.576 40.000 0.00 0.00 0.00 3.86
77 78 5.915175 ACTCCATCCGTTCTTATTTACTCC 58.085 41.667 0.00 0.00 0.00 3.85
78 79 7.714703 ACTACTCCATCCGTTCTTATTTACTC 58.285 38.462 0.00 0.00 0.00 2.59
79 80 7.657023 ACTACTCCATCCGTTCTTATTTACT 57.343 36.000 0.00 0.00 0.00 2.24
80 81 9.978044 ATAACTACTCCATCCGTTCTTATTTAC 57.022 33.333 0.00 0.00 0.00 2.01
82 83 9.901172 AAATAACTACTCCATCCGTTCTTATTT 57.099 29.630 0.00 0.00 0.00 1.40
83 84 9.901172 AAAATAACTACTCCATCCGTTCTTATT 57.099 29.630 0.00 0.00 0.00 1.40
86 87 8.537858 ACTAAAATAACTACTCCATCCGTTCTT 58.462 33.333 0.00 0.00 0.00 2.52
87 88 8.075761 ACTAAAATAACTACTCCATCCGTTCT 57.924 34.615 0.00 0.00 0.00 3.01
88 89 8.713737 AACTAAAATAACTACTCCATCCGTTC 57.286 34.615 0.00 0.00 0.00 3.95
130 131 7.400599 TTTCTACAGTACCGAACATCTATGT 57.599 36.000 0.00 0.00 44.20 2.29
131 132 8.697846 TTTTTCTACAGTACCGAACATCTATG 57.302 34.615 0.00 0.00 0.00 2.23
132 133 8.746530 TCTTTTTCTACAGTACCGAACATCTAT 58.253 33.333 0.00 0.00 0.00 1.98
133 134 8.114331 TCTTTTTCTACAGTACCGAACATCTA 57.886 34.615 0.00 0.00 0.00 1.98
134 135 6.989659 TCTTTTTCTACAGTACCGAACATCT 58.010 36.000 0.00 0.00 0.00 2.90
135 136 7.647907 TTCTTTTTCTACAGTACCGAACATC 57.352 36.000 0.00 0.00 0.00 3.06
136 137 8.617290 ATTTCTTTTTCTACAGTACCGAACAT 57.383 30.769 0.00 0.00 0.00 2.71
137 138 8.441312 AATTTCTTTTTCTACAGTACCGAACA 57.559 30.769 0.00 0.00 0.00 3.18
138 139 9.803130 GTAATTTCTTTTTCTACAGTACCGAAC 57.197 33.333 0.00 0.00 0.00 3.95
139 140 9.768662 AGTAATTTCTTTTTCTACAGTACCGAA 57.231 29.630 0.00 0.00 0.00 4.30
152 153 9.682465 GGAGGGAGTACATAGTAATTTCTTTTT 57.318 33.333 0.00 0.00 0.00 1.94
153 154 8.832735 TGGAGGGAGTACATAGTAATTTCTTTT 58.167 33.333 0.00 0.00 0.00 2.27
154 155 8.388656 TGGAGGGAGTACATAGTAATTTCTTT 57.611 34.615 0.00 0.00 0.00 2.52
155 156 7.989947 TGGAGGGAGTACATAGTAATTTCTT 57.010 36.000 0.00 0.00 0.00 2.52
156 157 8.568617 AATGGAGGGAGTACATAGTAATTTCT 57.431 34.615 0.00 0.00 0.00 2.52
157 158 7.878644 GGAATGGAGGGAGTACATAGTAATTTC 59.121 40.741 0.00 0.00 0.00 2.17
158 159 7.572861 AGGAATGGAGGGAGTACATAGTAATTT 59.427 37.037 0.00 0.00 0.00 1.82
159 160 7.082972 AGGAATGGAGGGAGTACATAGTAATT 58.917 38.462 0.00 0.00 0.00 1.40
160 161 6.635021 AGGAATGGAGGGAGTACATAGTAAT 58.365 40.000 0.00 0.00 0.00 1.89
161 162 6.039415 AGGAATGGAGGGAGTACATAGTAA 57.961 41.667 0.00 0.00 0.00 2.24
162 163 5.681494 AGGAATGGAGGGAGTACATAGTA 57.319 43.478 0.00 0.00 0.00 1.82
163 164 4.561254 AGGAATGGAGGGAGTACATAGT 57.439 45.455 0.00 0.00 0.00 2.12
164 165 6.996180 TTTAGGAATGGAGGGAGTACATAG 57.004 41.667 0.00 0.00 0.00 2.23
166 167 9.805204 ATATATTTAGGAATGGAGGGAGTACAT 57.195 33.333 0.00 0.00 0.00 2.29
167 168 9.046846 CATATATTTAGGAATGGAGGGAGTACA 57.953 37.037 0.00 0.00 0.00 2.90
168 169 9.047947 ACATATATTTAGGAATGGAGGGAGTAC 57.952 37.037 0.00 0.00 0.00 2.73
170 171 9.805204 ATACATATATTTAGGAATGGAGGGAGT 57.195 33.333 0.00 0.00 0.00 3.85
245 246 8.721478 GCAAAATGAGTGAATCTACAGTCTAAA 58.279 33.333 0.00 0.00 39.91 1.85
246 247 8.097038 AGCAAAATGAGTGAATCTACAGTCTAA 58.903 33.333 0.00 0.00 39.91 2.10
247 248 7.615403 AGCAAAATGAGTGAATCTACAGTCTA 58.385 34.615 0.00 0.00 39.91 2.59
248 249 6.471146 AGCAAAATGAGTGAATCTACAGTCT 58.529 36.000 0.00 0.00 39.91 3.24
249 250 6.183360 GGAGCAAAATGAGTGAATCTACAGTC 60.183 42.308 0.00 0.00 39.73 3.51
250 251 5.645497 GGAGCAAAATGAGTGAATCTACAGT 59.355 40.000 0.00 0.00 0.00 3.55
251 252 5.220548 CGGAGCAAAATGAGTGAATCTACAG 60.221 44.000 0.00 0.00 0.00 2.74
252 253 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
253 254 5.149054 CGGAGCAAAATGAGTGAATCTAC 57.851 43.478 0.00 0.00 0.00 2.59
271 272 4.257267 TCAATATGGACTACATGCGGAG 57.743 45.455 0.00 0.00 40.82 4.63
272 273 4.681074 TTCAATATGGACTACATGCGGA 57.319 40.909 0.00 0.00 40.82 5.54
273 274 5.947228 ATTTCAATATGGACTACATGCGG 57.053 39.130 0.00 0.00 40.82 5.69
274 275 8.484641 AGATATTTCAATATGGACTACATGCG 57.515 34.615 0.00 0.00 40.82 4.73
303 304 9.712305 CTCCATCCATTCGTAAATATAAGTCTT 57.288 33.333 0.00 0.00 0.00 3.01
304 305 8.871125 ACTCCATCCATTCGTAAATATAAGTCT 58.129 33.333 0.00 0.00 0.00 3.24
311 312 9.268268 GTGAAATACTCCATCCATTCGTAAATA 57.732 33.333 0.00 0.00 0.00 1.40
312 313 7.228706 GGTGAAATACTCCATCCATTCGTAAAT 59.771 37.037 0.00 0.00 32.94 1.40
313 314 6.540914 GGTGAAATACTCCATCCATTCGTAAA 59.459 38.462 0.00 0.00 32.94 2.01
314 315 6.053005 GGTGAAATACTCCATCCATTCGTAA 58.947 40.000 0.00 0.00 32.94 3.18
315 316 5.129650 TGGTGAAATACTCCATCCATTCGTA 59.870 40.000 0.00 0.00 37.26 3.43
316 317 4.080582 TGGTGAAATACTCCATCCATTCGT 60.081 41.667 0.00 0.00 37.26 3.85
317 318 4.450976 TGGTGAAATACTCCATCCATTCG 58.549 43.478 0.00 0.00 37.26 3.34
318 319 6.773976 TTTGGTGAAATACTCCATCCATTC 57.226 37.500 0.00 0.00 41.02 2.67
319 320 7.738437 ATTTTGGTGAAATACTCCATCCATT 57.262 32.000 0.00 0.00 41.02 3.16
332 333 9.130661 CCTGTCCATGTATATATTTTGGTGAAA 57.869 33.333 0.00 0.00 0.00 2.69
333 334 7.723616 CCCTGTCCATGTATATATTTTGGTGAA 59.276 37.037 0.00 0.00 0.00 3.18
334 335 7.073088 TCCCTGTCCATGTATATATTTTGGTGA 59.927 37.037 0.00 0.00 0.00 4.02
335 336 7.230747 TCCCTGTCCATGTATATATTTTGGTG 58.769 38.462 0.00 0.00 0.00 4.17
336 337 7.401060 TCCCTGTCCATGTATATATTTTGGT 57.599 36.000 0.00 0.00 0.00 3.67
343 344 9.656323 GGAGTTATATCCCTGTCCATGTATATA 57.344 37.037 0.00 0.00 32.79 0.86
344 345 8.129001 TGGAGTTATATCCCTGTCCATGTATAT 58.871 37.037 0.00 0.00 38.72 0.86
345 346 7.483881 TGGAGTTATATCCCTGTCCATGTATA 58.516 38.462 0.00 0.00 38.72 1.47
346 347 6.331032 TGGAGTTATATCCCTGTCCATGTAT 58.669 40.000 0.00 0.00 38.72 2.29
347 348 5.722290 TGGAGTTATATCCCTGTCCATGTA 58.278 41.667 0.00 0.00 38.72 2.29
348 349 4.566837 TGGAGTTATATCCCTGTCCATGT 58.433 43.478 0.00 0.00 38.72 3.21
349 350 5.768980 ATGGAGTTATATCCCTGTCCATG 57.231 43.478 0.87 0.00 42.08 3.66
350 351 5.415065 TCATGGAGTTATATCCCTGTCCAT 58.585 41.667 0.00 0.00 44.02 3.41
351 352 4.826616 TCATGGAGTTATATCCCTGTCCA 58.173 43.478 0.00 0.00 38.72 4.02
352 353 5.825593 TTCATGGAGTTATATCCCTGTCC 57.174 43.478 0.00 0.00 38.72 4.02
378 379 9.618890 GCAATGTATATATTCCTGTCCATGTAT 57.381 33.333 0.00 0.00 0.00 2.29
379 380 8.825774 AGCAATGTATATATTCCTGTCCATGTA 58.174 33.333 0.00 0.00 0.00 2.29
380 381 7.693132 AGCAATGTATATATTCCTGTCCATGT 58.307 34.615 0.00 0.00 0.00 3.21
381 382 8.571461 AAGCAATGTATATATTCCTGTCCATG 57.429 34.615 0.00 0.00 0.00 3.66
382 383 8.385491 TGAAGCAATGTATATATTCCTGTCCAT 58.615 33.333 0.00 0.00 0.00 3.41
383 384 7.661437 GTGAAGCAATGTATATATTCCTGTCCA 59.339 37.037 0.00 0.00 0.00 4.02
384 385 7.661437 TGTGAAGCAATGTATATATTCCTGTCC 59.339 37.037 0.00 0.00 0.00 4.02
385 386 8.607441 TGTGAAGCAATGTATATATTCCTGTC 57.393 34.615 0.00 0.00 0.00 3.51
386 387 7.173907 GCTGTGAAGCAATGTATATATTCCTGT 59.826 37.037 0.00 0.00 34.41 4.00
387 388 7.389884 AGCTGTGAAGCAATGTATATATTCCTG 59.610 37.037 0.00 0.00 37.25 3.86
388 389 7.456725 AGCTGTGAAGCAATGTATATATTCCT 58.543 34.615 0.00 0.00 37.25 3.36
389 390 7.678947 AGCTGTGAAGCAATGTATATATTCC 57.321 36.000 0.00 0.00 37.25 3.01
390 391 8.777413 TGAAGCTGTGAAGCAATGTATATATTC 58.223 33.333 0.00 0.00 37.25 1.75
391 392 8.681486 TGAAGCTGTGAAGCAATGTATATATT 57.319 30.769 0.00 0.00 37.25 1.28
392 393 8.152898 TCTGAAGCTGTGAAGCAATGTATATAT 58.847 33.333 0.00 0.00 37.25 0.86
393 394 7.500141 TCTGAAGCTGTGAAGCAATGTATATA 58.500 34.615 0.00 0.00 37.25 0.86
394 395 6.351711 TCTGAAGCTGTGAAGCAATGTATAT 58.648 36.000 0.00 0.00 37.25 0.86
395 396 5.733676 TCTGAAGCTGTGAAGCAATGTATA 58.266 37.500 0.00 0.00 37.25 1.47
396 397 4.582869 TCTGAAGCTGTGAAGCAATGTAT 58.417 39.130 0.00 0.00 37.25 2.29
397 398 4.006780 TCTGAAGCTGTGAAGCAATGTA 57.993 40.909 0.00 0.00 37.25 2.29
419 420 1.819928 ACATGGCATCTTACAACGCA 58.180 45.000 0.00 0.00 0.00 5.24
437 446 6.159293 TCTGTTGTCTGAGTCATATGTGAAC 58.841 40.000 1.90 0.00 35.80 3.18
452 461 8.391106 GTCGATAGCAAAATATTTCTGTTGTCT 58.609 33.333 0.10 1.62 0.00 3.41
472 481 9.098355 CTCAAAAATCTTGGACAATAGTCGATA 57.902 33.333 0.00 0.00 45.92 2.92
476 485 7.454260 ACCTCAAAAATCTTGGACAATAGTC 57.546 36.000 0.00 0.00 44.21 2.59
493 502 7.003482 TGCATGGCTTCATATATAACCTCAAA 58.997 34.615 0.00 0.00 0.00 2.69
496 505 7.042456 CGTATGCATGGCTTCATATATAACCTC 60.042 40.741 10.16 0.00 0.00 3.85
508 517 0.815213 TGCTCCGTATGCATGGCTTC 60.815 55.000 10.16 0.00 35.31 3.86
522 531 2.490903 AGTCATGCACTCATTTTGCTCC 59.509 45.455 0.00 0.00 40.86 4.70
523 532 3.844577 AGTCATGCACTCATTTTGCTC 57.155 42.857 0.00 0.00 40.86 4.26
525 534 3.671928 GTGAAGTCATGCACTCATTTTGC 59.328 43.478 0.00 0.00 40.63 3.68
526 535 3.910170 CGTGAAGTCATGCACTCATTTTG 59.090 43.478 0.00 0.00 32.30 2.44
529 538 2.079158 CCGTGAAGTCATGCACTCATT 58.921 47.619 0.00 0.00 32.30 2.57
530 539 1.276138 TCCGTGAAGTCATGCACTCAT 59.724 47.619 0.00 0.00 32.30 2.90
531 540 0.678950 TCCGTGAAGTCATGCACTCA 59.321 50.000 0.00 0.00 32.30 3.41
532 541 1.337260 ACTCCGTGAAGTCATGCACTC 60.337 52.381 0.00 0.00 32.30 3.51
640 670 7.634671 TGGACTTATCATCGTTGTTAGAGTA 57.365 36.000 0.00 0.00 0.00 2.59
654 684 6.005198 ACACCGGTTTAATTTGGACTTATCA 58.995 36.000 2.97 0.00 0.00 2.15
769 801 1.476085 CGTGCAGCCCAAAATGGATAA 59.524 47.619 0.00 0.00 40.96 1.75
771 803 0.899717 ACGTGCAGCCCAAAATGGAT 60.900 50.000 0.00 0.00 40.96 3.41
772 804 0.250945 TACGTGCAGCCCAAAATGGA 60.251 50.000 0.00 0.00 40.96 3.41
775 807 1.883021 GCTACGTGCAGCCCAAAAT 59.117 52.632 0.00 0.00 42.31 1.82
789 821 3.132646 TGGCATGGGAAATCAAATGCTAC 59.867 43.478 15.03 5.01 43.87 3.58
829 867 0.456312 GCGTGTGAACTCCTACTCCG 60.456 60.000 0.00 0.00 0.00 4.63
871 917 2.889522 TATAGGGGAAGGAAGGTGCT 57.110 50.000 0.00 0.00 0.00 4.40
901 947 0.321346 GTGCTTTGGTTTGATGGGGG 59.679 55.000 0.00 0.00 0.00 5.40
903 949 1.606224 GCTGTGCTTTGGTTTGATGGG 60.606 52.381 0.00 0.00 0.00 4.00
904 950 1.342174 AGCTGTGCTTTGGTTTGATGG 59.658 47.619 0.00 0.00 33.89 3.51
905 951 2.669364 GAGCTGTGCTTTGGTTTGATG 58.331 47.619 0.00 0.00 39.88 3.07
906 952 1.267806 CGAGCTGTGCTTTGGTTTGAT 59.732 47.619 0.00 0.00 39.88 2.57
907 953 0.662619 CGAGCTGTGCTTTGGTTTGA 59.337 50.000 0.00 0.00 39.88 2.69
908 954 0.936297 GCGAGCTGTGCTTTGGTTTG 60.936 55.000 0.00 0.00 39.88 2.93
909 955 1.360192 GCGAGCTGTGCTTTGGTTT 59.640 52.632 0.00 0.00 39.88 3.27
910 956 1.383456 TTGCGAGCTGTGCTTTGGTT 61.383 50.000 8.82 0.00 39.88 3.67
911 957 1.789078 CTTGCGAGCTGTGCTTTGGT 61.789 55.000 8.82 0.00 39.88 3.67
942 1000 4.124351 CGAGCACGGCCGGTCTTA 62.124 66.667 31.76 0.00 35.72 2.10
966 1024 0.031616 GGAGGTGATCTGAGGGGAGT 60.032 60.000 0.00 0.00 0.00 3.85
967 1025 0.762461 GGGAGGTGATCTGAGGGGAG 60.762 65.000 0.00 0.00 0.00 4.30
1281 1372 9.726438 AGAAATAATGAAATATACGAGGGAAGG 57.274 33.333 0.00 0.00 0.00 3.46
1287 1378 8.162880 GCGTCCAGAAATAATGAAATATACGAG 58.837 37.037 0.00 0.00 0.00 4.18
1330 1421 4.353737 CATGGCCGATTGTACTGAAAATG 58.646 43.478 0.00 0.00 0.00 2.32
1427 1556 1.026718 CGGGCAGAAACAGATGGGTC 61.027 60.000 0.00 0.00 0.00 4.46
1464 1626 8.528643 ACATGCCATATACGTATAAGAGCTAAA 58.471 33.333 18.69 7.38 0.00 1.85
1468 1630 8.755941 CATTACATGCCATATACGTATAAGAGC 58.244 37.037 18.69 19.38 0.00 4.09
1476 1638 4.690748 GTGCTCATTACATGCCATATACGT 59.309 41.667 0.00 0.00 0.00 3.57
1477 1639 4.690280 TGTGCTCATTACATGCCATATACG 59.310 41.667 0.00 0.00 0.00 3.06
1496 1658 0.605319 TCCACGAAATCCACCTGTGC 60.605 55.000 0.00 0.00 0.00 4.57
1550 1712 4.618920 GGAGTTCAGGTTCTCCAAGTTA 57.381 45.455 6.37 0.00 46.59 2.24
1697 1877 3.618690 AGGAACTATGAGCAACTGGAC 57.381 47.619 0.00 0.00 36.02 4.02
1700 1880 5.330455 TCTGTAGGAACTATGAGCAACTG 57.670 43.478 0.00 0.00 45.60 3.16
1702 1882 5.932303 TGTTTCTGTAGGAACTATGAGCAAC 59.068 40.000 4.79 0.00 45.60 4.17
1707 1887 7.444183 CCAAACTTGTTTCTGTAGGAACTATGA 59.556 37.037 4.79 0.00 45.60 2.15
1708 1888 7.444183 TCCAAACTTGTTTCTGTAGGAACTATG 59.556 37.037 4.79 0.00 45.60 2.23
1709 1889 7.514721 TCCAAACTTGTTTCTGTAGGAACTAT 58.485 34.615 4.79 0.00 45.60 2.12
1710 1890 6.891388 TCCAAACTTGTTTCTGTAGGAACTA 58.109 36.000 4.79 0.00 41.75 2.24
1711 1891 5.751586 TCCAAACTTGTTTCTGTAGGAACT 58.248 37.500 4.79 0.00 46.37 3.01
1712 1892 6.486993 AGATCCAAACTTGTTTCTGTAGGAAC 59.513 38.462 6.41 0.00 33.13 3.62
1713 1893 6.486657 CAGATCCAAACTTGTTTCTGTAGGAA 59.513 38.462 6.41 0.00 33.83 3.36
1715 1895 5.997746 TCAGATCCAAACTTGTTTCTGTAGG 59.002 40.000 13.94 4.02 36.97 3.18
1721 1901 9.696917 ATAAATGTTCAGATCCAAACTTGTTTC 57.303 29.630 8.72 0.00 0.00 2.78
1745 2000 9.007494 AGTCCGTGTATTAGGAGGGTATATATA 57.993 37.037 0.00 0.00 37.18 0.86
1747 2002 7.114754 CAGTCCGTGTATTAGGAGGGTATATA 58.885 42.308 0.00 0.00 37.18 0.86
1748 2003 5.950549 CAGTCCGTGTATTAGGAGGGTATAT 59.049 44.000 0.00 0.00 37.18 0.86
1749 2004 5.319453 CAGTCCGTGTATTAGGAGGGTATA 58.681 45.833 0.00 0.00 37.18 1.47
1750 2005 4.150359 CAGTCCGTGTATTAGGAGGGTAT 58.850 47.826 0.00 0.00 37.18 2.73
1752 2007 2.385803 CAGTCCGTGTATTAGGAGGGT 58.614 52.381 0.00 0.00 37.18 4.34
1753 2008 1.068741 GCAGTCCGTGTATTAGGAGGG 59.931 57.143 0.00 0.00 37.18 4.30
1755 2010 3.384668 CATGCAGTCCGTGTATTAGGAG 58.615 50.000 0.00 0.00 37.18 3.69
1757 2012 2.158957 ACCATGCAGTCCGTGTATTAGG 60.159 50.000 0.00 0.00 26.99 2.69
1758 2013 3.179443 ACCATGCAGTCCGTGTATTAG 57.821 47.619 0.00 0.00 26.99 1.73
1760 2015 2.158957 CCTACCATGCAGTCCGTGTATT 60.159 50.000 0.00 0.00 26.99 1.89
1763 2018 1.596934 CCTACCATGCAGTCCGTGT 59.403 57.895 0.00 0.00 0.00 4.49
1764 2019 1.815421 GCCTACCATGCAGTCCGTG 60.815 63.158 0.00 0.00 0.00 4.94
1765 2020 2.290287 TGCCTACCATGCAGTCCGT 61.290 57.895 0.00 0.00 34.05 4.69
1766 2021 1.815421 GTGCCTACCATGCAGTCCG 60.815 63.158 0.00 0.00 39.87 4.79
1767 2022 1.452108 GGTGCCTACCATGCAGTCC 60.452 63.158 0.00 0.00 46.71 3.85
1768 2023 4.225497 GGTGCCTACCATGCAGTC 57.775 61.111 0.00 0.00 46.71 3.51
1798 2053 3.782443 GGATCGGGCCGGTCAAGT 61.782 66.667 37.29 12.45 38.92 3.16
1923 2182 2.100916 ACGGGAAAACGATCGAGATGAT 59.899 45.455 24.34 1.06 41.06 2.45
1952 2211 0.318441 TTGAGAGGTTCCTGCAGTCG 59.682 55.000 13.81 0.00 0.00 4.18
1954 2213 0.036022 GCTTGAGAGGTTCCTGCAGT 59.964 55.000 13.81 0.00 0.00 4.40
1955 2214 0.035881 TGCTTGAGAGGTTCCTGCAG 59.964 55.000 6.78 6.78 32.07 4.41
1990 2249 1.123928 GGGACCATCTGTCGGAATCT 58.876 55.000 0.00 0.00 45.46 2.40
2054 2313 0.108186 CATCGGTCTAGCAGTTGCCA 60.108 55.000 0.00 0.00 43.38 4.92
2140 2406 1.817099 CCCGATTCTCTGGCTGCAC 60.817 63.158 0.50 0.00 0.00 4.57
2181 2473 3.028850 CCCTCACGAATCCACCTAAGTA 58.971 50.000 0.00 0.00 0.00 2.24
2201 2493 2.945668 CCTGCTCAGCTAATTAACCACC 59.054 50.000 0.00 0.00 0.00 4.61
2203 2495 2.643551 GCCTGCTCAGCTAATTAACCA 58.356 47.619 0.00 0.00 0.00 3.67
2212 2504 2.029623 CATAAATTGGCCTGCTCAGCT 58.970 47.619 3.32 0.00 0.00 4.24
2213 2505 1.068127 CCATAAATTGGCCTGCTCAGC 59.932 52.381 3.32 0.00 39.09 4.26
2214 2506 2.658285 TCCATAAATTGGCCTGCTCAG 58.342 47.619 3.32 0.00 46.01 3.35
2215 2507 2.824689 TCCATAAATTGGCCTGCTCA 57.175 45.000 3.32 0.00 46.01 4.26
2216 2508 2.961062 ACATCCATAAATTGGCCTGCTC 59.039 45.455 3.32 0.00 46.01 4.26
2217 2509 3.036452 ACATCCATAAATTGGCCTGCT 57.964 42.857 3.32 0.00 46.01 4.24
2224 2553 7.061673 CGGTTTGTACACAACATCCATAAATTG 59.938 37.037 17.09 0.00 38.10 2.32
2233 2562 4.201589 CGATCTCGGTTTGTACACAACATC 60.202 45.833 17.09 12.09 35.12 3.06
2247 2578 0.100682 CCACAACGATCGATCTCGGT 59.899 55.000 24.34 8.58 42.88 4.69
2367 2761 1.512926 ATGCAGTCAACTCCGTGAAC 58.487 50.000 0.00 0.00 0.00 3.18
2373 2767 1.126846 CGAACGAATGCAGTCAACTCC 59.873 52.381 15.31 0.00 0.00 3.85
2412 2846 1.136336 GCTTTGAAGCGGTACTGAACG 60.136 52.381 5.68 0.00 42.88 3.95
2425 2859 6.888105 TGTGATCATATAGGTCAGCTTTGAA 58.112 36.000 0.00 0.00 0.00 2.69
2426 2860 6.463472 CCTGTGATCATATAGGTCAGCTTTGA 60.463 42.308 0.00 0.00 0.00 2.69
2427 2861 5.699915 CCTGTGATCATATAGGTCAGCTTTG 59.300 44.000 0.00 0.00 0.00 2.77
2428 2862 5.367937 ACCTGTGATCATATAGGTCAGCTTT 59.632 40.000 18.28 1.15 39.23 3.51
2429 2863 4.904251 ACCTGTGATCATATAGGTCAGCTT 59.096 41.667 18.28 1.69 39.23 3.74
2430 2864 4.487804 ACCTGTGATCATATAGGTCAGCT 58.512 43.478 18.28 0.00 39.23 4.24
2574 3011 2.047274 ATCCACACCGTTGAGGCG 60.047 61.111 0.00 0.00 46.52 5.52
2642 3081 1.247567 TGGCTGCTAACTCAAAAGGC 58.752 50.000 0.00 0.00 0.00 4.35
2668 4791 3.686241 CACATGTTCATCACGGTCTGATT 59.314 43.478 0.00 0.00 37.53 2.57
2674 4797 2.839486 AGACACATGTTCATCACGGT 57.161 45.000 0.00 0.00 0.00 4.83
2676 4799 7.297391 TCATTAAAAGACACATGTTCATCACG 58.703 34.615 0.00 0.00 0.00 4.35
2768 4891 3.261580 CAACAGACATGCCTATTGTCGA 58.738 45.455 0.00 0.00 46.39 4.20
2769 4892 3.002791 ACAACAGACATGCCTATTGTCG 58.997 45.455 0.00 0.00 46.39 4.35
2775 4899 1.072173 ACAGCACAACAGACATGCCTA 59.928 47.619 0.00 0.00 40.33 3.93
2777 4901 0.039798 CACAGCACAACAGACATGCC 60.040 55.000 0.00 0.00 40.33 4.40
2793 4917 5.661056 ATTTAGGACTCGACTGATTCACA 57.339 39.130 0.00 0.00 0.00 3.58
2794 4918 6.969828 AAATTTAGGACTCGACTGATTCAC 57.030 37.500 0.00 0.00 0.00 3.18
2795 4919 7.117812 GTCAAAATTTAGGACTCGACTGATTCA 59.882 37.037 13.05 0.00 0.00 2.57
2796 4920 7.457060 GTCAAAATTTAGGACTCGACTGATTC 58.543 38.462 13.05 0.00 0.00 2.52
2797 4921 6.090898 CGTCAAAATTTAGGACTCGACTGATT 59.909 38.462 16.39 0.00 0.00 2.57
2803 4927 4.873817 TCACGTCAAAATTTAGGACTCGA 58.126 39.130 16.39 11.40 0.00 4.04
2804 4928 5.585500 TTCACGTCAAAATTTAGGACTCG 57.415 39.130 16.39 9.73 0.00 4.18
2820 4944 5.140747 AGATGCTCTTACTCTTTTCACGT 57.859 39.130 0.00 0.00 0.00 4.49
2821 4945 6.473397 AAAGATGCTCTTACTCTTTTCACG 57.527 37.500 0.00 0.00 35.27 4.35
2836 4960 0.179000 CGGGGTCTGCTAAAGATGCT 59.821 55.000 0.00 0.00 37.23 3.79
2837 4961 0.107654 ACGGGGTCTGCTAAAGATGC 60.108 55.000 0.00 0.00 37.23 3.91
2838 4962 1.066143 ACACGGGGTCTGCTAAAGATG 60.066 52.381 0.00 0.00 37.23 2.90
2839 4963 1.276622 ACACGGGGTCTGCTAAAGAT 58.723 50.000 0.00 0.00 37.23 2.40
2840 4964 1.927487 TACACGGGGTCTGCTAAAGA 58.073 50.000 0.00 0.00 0.00 2.52
2841 4965 2.754946 TTACACGGGGTCTGCTAAAG 57.245 50.000 0.00 0.00 0.00 1.85
2842 4966 2.937873 GCATTACACGGGGTCTGCTAAA 60.938 50.000 9.81 0.00 36.11 1.85
2843 4967 1.406341 GCATTACACGGGGTCTGCTAA 60.406 52.381 9.81 0.00 36.11 3.09
2844 4968 0.177141 GCATTACACGGGGTCTGCTA 59.823 55.000 9.81 0.00 36.11 3.49
2845 4969 1.078426 GCATTACACGGGGTCTGCT 60.078 57.895 9.81 0.00 36.11 4.24
2846 4970 2.112815 GGCATTACACGGGGTCTGC 61.113 63.158 8.84 8.84 37.49 4.26
2847 4971 1.813753 CGGCATTACACGGGGTCTG 60.814 63.158 0.00 0.00 0.00 3.51
2848 4972 1.335132 ATCGGCATTACACGGGGTCT 61.335 55.000 0.00 0.00 0.00 3.85
2849 4973 0.878961 GATCGGCATTACACGGGGTC 60.879 60.000 0.00 0.00 0.00 4.46
2850 4974 1.145377 GATCGGCATTACACGGGGT 59.855 57.895 0.00 0.00 0.00 4.95
2851 4975 1.597027 GGATCGGCATTACACGGGG 60.597 63.158 0.00 0.00 0.00 5.73
2852 4976 1.145156 TGGATCGGCATTACACGGG 59.855 57.895 0.00 0.00 0.00 5.28
2853 4977 0.461163 TGTGGATCGGCATTACACGG 60.461 55.000 0.00 0.00 34.93 4.94
2854 4978 1.364721 TTGTGGATCGGCATTACACG 58.635 50.000 0.00 0.00 34.93 4.49
2855 4979 3.840890 TTTTGTGGATCGGCATTACAC 57.159 42.857 0.00 0.00 0.00 2.90
2856 4980 3.428725 GCATTTTGTGGATCGGCATTACA 60.429 43.478 0.00 0.00 0.00 2.41
2857 4981 3.115554 GCATTTTGTGGATCGGCATTAC 58.884 45.455 0.00 0.00 0.00 1.89
2858 4982 2.223456 CGCATTTTGTGGATCGGCATTA 60.223 45.455 0.00 0.00 0.00 1.90
2859 4983 1.469595 CGCATTTTGTGGATCGGCATT 60.470 47.619 0.00 0.00 0.00 3.56
2860 4984 0.101040 CGCATTTTGTGGATCGGCAT 59.899 50.000 0.00 0.00 0.00 4.40
2861 4985 1.240641 ACGCATTTTGTGGATCGGCA 61.241 50.000 0.00 0.00 30.87 5.69
2862 4986 0.109319 AACGCATTTTGTGGATCGGC 60.109 50.000 0.00 0.00 30.87 5.54
2863 4987 2.346099 AAACGCATTTTGTGGATCGG 57.654 45.000 0.00 0.00 30.87 4.18
2864 4988 5.806286 ACTATAAACGCATTTTGTGGATCG 58.194 37.500 0.00 0.00 30.87 3.69
2865 4989 6.410914 CGAACTATAAACGCATTTTGTGGATC 59.589 38.462 0.00 0.00 30.87 3.36
2866 4990 6.255215 CGAACTATAAACGCATTTTGTGGAT 58.745 36.000 0.00 0.00 30.87 3.41
2867 4991 5.623335 CGAACTATAAACGCATTTTGTGGA 58.377 37.500 0.00 0.00 30.87 4.02
2868 4992 5.908240 CGAACTATAAACGCATTTTGTGG 57.092 39.130 0.00 0.00 30.87 4.17
2878 5002 6.539324 TCCATTTTTCAGCGAACTATAAACG 58.461 36.000 0.00 0.00 0.00 3.60
2879 5003 8.911247 AATCCATTTTTCAGCGAACTATAAAC 57.089 30.769 0.00 0.00 0.00 2.01
2880 5004 9.352784 CAAATCCATTTTTCAGCGAACTATAAA 57.647 29.630 0.00 0.00 0.00 1.40
2881 5005 7.487829 GCAAATCCATTTTTCAGCGAACTATAA 59.512 33.333 0.00 0.00 0.00 0.98
2882 5006 6.972328 GCAAATCCATTTTTCAGCGAACTATA 59.028 34.615 0.00 0.00 0.00 1.31
2883 5007 5.807011 GCAAATCCATTTTTCAGCGAACTAT 59.193 36.000 0.00 0.00 0.00 2.12
2884 5008 5.160641 GCAAATCCATTTTTCAGCGAACTA 58.839 37.500 0.00 0.00 0.00 2.24
2885 5009 3.989817 GCAAATCCATTTTTCAGCGAACT 59.010 39.130 0.00 0.00 0.00 3.01
2886 5010 3.181541 CGCAAATCCATTTTTCAGCGAAC 60.182 43.478 8.14 0.00 39.35 3.95
2887 5011 2.985809 CGCAAATCCATTTTTCAGCGAA 59.014 40.909 8.14 0.00 39.35 4.70
2888 5012 2.594321 CGCAAATCCATTTTTCAGCGA 58.406 42.857 8.14 0.00 39.35 4.93
2889 5013 1.655099 CCGCAAATCCATTTTTCAGCG 59.345 47.619 0.00 0.00 37.84 5.18
2890 5014 2.001872 CCCGCAAATCCATTTTTCAGC 58.998 47.619 0.00 0.00 0.00 4.26
2891 5015 3.253230 GACCCGCAAATCCATTTTTCAG 58.747 45.455 0.00 0.00 0.00 3.02
2892 5016 2.352225 CGACCCGCAAATCCATTTTTCA 60.352 45.455 0.00 0.00 0.00 2.69
2893 5017 2.094957 TCGACCCGCAAATCCATTTTTC 60.095 45.455 0.00 0.00 0.00 2.29
2894 5018 1.889829 TCGACCCGCAAATCCATTTTT 59.110 42.857 0.00 0.00 0.00 1.94
2895 5019 1.201414 GTCGACCCGCAAATCCATTTT 59.799 47.619 3.51 0.00 0.00 1.82
2896 5020 0.808755 GTCGACCCGCAAATCCATTT 59.191 50.000 3.51 0.00 0.00 2.32
2897 5021 0.322098 TGTCGACCCGCAAATCCATT 60.322 50.000 14.12 0.00 0.00 3.16
2898 5022 1.024579 GTGTCGACCCGCAAATCCAT 61.025 55.000 14.12 0.00 0.00 3.41
2899 5023 1.669760 GTGTCGACCCGCAAATCCA 60.670 57.895 14.12 0.00 0.00 3.41
2900 5024 2.736682 CGTGTCGACCCGCAAATCC 61.737 63.158 14.12 0.00 0.00 3.01
2901 5025 2.736682 CCGTGTCGACCCGCAAATC 61.737 63.158 15.28 0.00 0.00 2.17
2902 5026 2.740826 CCGTGTCGACCCGCAAAT 60.741 61.111 15.28 0.00 0.00 2.32
2903 5027 4.224274 ACCGTGTCGACCCGCAAA 62.224 61.111 15.28 0.00 0.00 3.68
2904 5028 4.953868 CACCGTGTCGACCCGCAA 62.954 66.667 15.28 0.00 0.00 4.85
2908 5032 2.710724 AAAGAGCACCGTGTCGACCC 62.711 60.000 14.12 0.00 0.00 4.46
2909 5033 0.878961 AAAAGAGCACCGTGTCGACC 60.879 55.000 14.12 3.43 0.00 4.79
2910 5034 1.454653 GTAAAAGAGCACCGTGTCGAC 59.545 52.381 9.11 9.11 0.00 4.20
2911 5035 1.067364 TGTAAAAGAGCACCGTGTCGA 59.933 47.619 0.00 0.00 0.00 4.20
2912 5036 1.455786 CTGTAAAAGAGCACCGTGTCG 59.544 52.381 0.00 0.00 0.00 4.35
2913 5037 1.798813 CCTGTAAAAGAGCACCGTGTC 59.201 52.381 0.00 0.00 0.00 3.67
2914 5038 1.140252 ACCTGTAAAAGAGCACCGTGT 59.860 47.619 0.00 0.00 0.00 4.49
2915 5039 1.798813 GACCTGTAAAAGAGCACCGTG 59.201 52.381 0.00 0.00 0.00 4.94
2916 5040 1.414919 TGACCTGTAAAAGAGCACCGT 59.585 47.619 0.00 0.00 0.00 4.83
2917 5041 2.069273 CTGACCTGTAAAAGAGCACCG 58.931 52.381 0.00 0.00 0.00 4.94
2918 5042 1.807142 GCTGACCTGTAAAAGAGCACC 59.193 52.381 0.00 0.00 0.00 5.01
2919 5043 2.772287 AGCTGACCTGTAAAAGAGCAC 58.228 47.619 0.00 0.00 0.00 4.40
2920 5044 3.323691 TGTAGCTGACCTGTAAAAGAGCA 59.676 43.478 0.00 0.00 0.00 4.26
2921 5045 3.680458 GTGTAGCTGACCTGTAAAAGAGC 59.320 47.826 0.00 0.00 0.00 4.09
2922 5046 3.921021 CGTGTAGCTGACCTGTAAAAGAG 59.079 47.826 0.00 0.00 0.00 2.85
2923 5047 3.305813 CCGTGTAGCTGACCTGTAAAAGA 60.306 47.826 0.00 0.00 0.00 2.52
2924 5048 2.993899 CCGTGTAGCTGACCTGTAAAAG 59.006 50.000 0.00 0.00 0.00 2.27
2925 5049 2.289195 CCCGTGTAGCTGACCTGTAAAA 60.289 50.000 0.00 0.00 0.00 1.52
2926 5050 1.274167 CCCGTGTAGCTGACCTGTAAA 59.726 52.381 0.00 0.00 0.00 2.01
2927 5051 0.892755 CCCGTGTAGCTGACCTGTAA 59.107 55.000 0.00 0.00 0.00 2.41
2928 5052 0.968901 CCCCGTGTAGCTGACCTGTA 60.969 60.000 0.00 0.00 0.00 2.74
2929 5053 2.283529 CCCCGTGTAGCTGACCTGT 61.284 63.158 0.00 0.00 0.00 4.00
2930 5054 2.227089 GACCCCGTGTAGCTGACCTG 62.227 65.000 0.00 0.00 0.00 4.00
2931 5055 1.982938 GACCCCGTGTAGCTGACCT 60.983 63.158 0.00 0.00 0.00 3.85
2932 5056 1.982938 AGACCCCGTGTAGCTGACC 60.983 63.158 0.00 0.00 0.00 4.02
2933 5057 1.215647 CAGACCCCGTGTAGCTGAC 59.784 63.158 0.00 0.00 0.00 3.51
2934 5058 2.646175 GCAGACCCCGTGTAGCTGA 61.646 63.158 0.00 0.00 0.00 4.26
2935 5059 2.125512 GCAGACCCCGTGTAGCTG 60.126 66.667 0.00 0.00 0.00 4.24
2936 5060 2.283966 AGCAGACCCCGTGTAGCT 60.284 61.111 0.00 0.00 34.57 3.32
2937 5061 2.184579 GAGCAGACCCCGTGTAGC 59.815 66.667 0.00 0.00 0.00 3.58
2938 5062 2.490217 CGAGCAGACCCCGTGTAG 59.510 66.667 0.00 0.00 0.00 2.74
2939 5063 3.066190 CCGAGCAGACCCCGTGTA 61.066 66.667 0.00 0.00 0.00 2.90
2963 5087 4.973055 TTTGCGGGTCGACGTGGG 62.973 66.667 9.92 0.00 35.98 4.61
2964 5088 2.736682 GATTTGCGGGTCGACGTGG 61.737 63.158 9.92 0.00 35.98 4.94
2965 5089 2.776072 GATTTGCGGGTCGACGTG 59.224 61.111 9.92 5.34 35.98 4.49
2966 5090 2.752322 TTCGATTTGCGGGTCGACGT 62.752 55.000 9.92 0.00 45.43 4.34
2967 5091 1.619526 TTTCGATTTGCGGGTCGACG 61.620 55.000 9.92 0.00 45.43 5.12
2968 5092 0.513820 TTTTCGATTTGCGGGTCGAC 59.486 50.000 7.13 7.13 45.43 4.20
2969 5093 0.513820 GTTTTCGATTTGCGGGTCGA 59.486 50.000 3.45 3.45 44.25 4.20
2970 5094 0.453782 GGTTTTCGATTTGCGGGTCG 60.454 55.000 0.00 0.00 41.33 4.79
2971 5095 0.109458 GGGTTTTCGATTTGCGGGTC 60.109 55.000 0.00 0.00 41.33 4.46
2972 5096 1.529152 GGGGTTTTCGATTTGCGGGT 61.529 55.000 0.00 0.00 41.33 5.28
2973 5097 1.214325 GGGGTTTTCGATTTGCGGG 59.786 57.895 0.00 0.00 41.33 6.13
2974 5098 1.154112 CGGGGTTTTCGATTTGCGG 60.154 57.895 0.00 0.00 41.33 5.69
2975 5099 1.799916 GCGGGGTTTTCGATTTGCG 60.800 57.895 0.00 0.00 42.69 4.85
2976 5100 0.108851 ATGCGGGGTTTTCGATTTGC 60.109 50.000 0.00 0.00 0.00 3.68
2977 5101 3.434637 CTTATGCGGGGTTTTCGATTTG 58.565 45.455 0.00 0.00 0.00 2.32
2978 5102 2.159296 GCTTATGCGGGGTTTTCGATTT 60.159 45.455 0.00 0.00 0.00 2.17
2979 5103 1.404035 GCTTATGCGGGGTTTTCGATT 59.596 47.619 0.00 0.00 0.00 3.34
2980 5104 1.021968 GCTTATGCGGGGTTTTCGAT 58.978 50.000 0.00 0.00 0.00 3.59
2981 5105 2.473457 GCTTATGCGGGGTTTTCGA 58.527 52.632 0.00 0.00 0.00 3.71
2992 5116 2.104144 CGCTGTCAAATTCGCTTATGC 58.896 47.619 0.00 0.00 0.00 3.14
2993 5117 3.656651 TCGCTGTCAAATTCGCTTATG 57.343 42.857 0.00 0.00 0.00 1.90
2994 5118 4.882671 AATCGCTGTCAAATTCGCTTAT 57.117 36.364 0.00 0.00 0.00 1.73
2995 5119 4.153296 TGAAATCGCTGTCAAATTCGCTTA 59.847 37.500 0.00 0.00 0.00 3.09
2996 5120 3.058293 TGAAATCGCTGTCAAATTCGCTT 60.058 39.130 0.00 0.00 0.00 4.68
2997 5121 2.483877 TGAAATCGCTGTCAAATTCGCT 59.516 40.909 0.00 0.00 0.00 4.93
2998 5122 2.850321 TGAAATCGCTGTCAAATTCGC 58.150 42.857 0.00 0.00 0.00 4.70
2999 5123 4.218265 TGTTGAAATCGCTGTCAAATTCG 58.782 39.130 0.00 0.00 35.60 3.34
3000 5124 6.695292 ATTGTTGAAATCGCTGTCAAATTC 57.305 33.333 0.00 0.00 35.60 2.17
3001 5125 6.700960 TCAATTGTTGAAATCGCTGTCAAATT 59.299 30.769 5.13 0.00 36.59 1.82
3002 5126 6.215121 TCAATTGTTGAAATCGCTGTCAAAT 58.785 32.000 5.13 0.00 36.59 2.32
3003 5127 5.586339 TCAATTGTTGAAATCGCTGTCAAA 58.414 33.333 5.13 0.00 36.59 2.69
3004 5128 5.180367 TCAATTGTTGAAATCGCTGTCAA 57.820 34.783 5.13 0.00 36.59 3.18
3005 5129 4.275689 ACTCAATTGTTGAAATCGCTGTCA 59.724 37.500 5.13 0.00 39.58 3.58
3006 5130 4.787598 ACTCAATTGTTGAAATCGCTGTC 58.212 39.130 5.13 0.00 39.58 3.51
3007 5131 4.836125 ACTCAATTGTTGAAATCGCTGT 57.164 36.364 5.13 0.00 39.58 4.40
3008 5132 5.214417 TGAACTCAATTGTTGAAATCGCTG 58.786 37.500 5.13 0.00 39.58 5.18
3009 5133 5.437289 TGAACTCAATTGTTGAAATCGCT 57.563 34.783 5.13 0.00 39.58 4.93
3010 5134 6.695292 ATTGAACTCAATTGTTGAAATCGC 57.305 33.333 5.13 0.00 43.48 4.58
3032 5156 9.009327 CGCGAACTATGATTTATTGTTCAAAAT 57.991 29.630 0.00 0.00 45.68 1.82
3033 5157 7.007905 GCGCGAACTATGATTTATTGTTCAAAA 59.992 33.333 12.10 0.00 45.68 2.44
3034 5158 6.467682 GCGCGAACTATGATTTATTGTTCAAA 59.532 34.615 12.10 0.00 45.68 2.69
3035 5159 5.963004 GCGCGAACTATGATTTATTGTTCAA 59.037 36.000 12.10 0.00 45.68 2.69
3036 5160 5.498159 GCGCGAACTATGATTTATTGTTCA 58.502 37.500 12.10 0.00 45.68 3.18
3037 5161 4.603146 CGCGCGAACTATGATTTATTGTTC 59.397 41.667 28.94 5.92 43.53 3.18
3038 5162 4.514506 CGCGCGAACTATGATTTATTGTT 58.485 39.130 28.94 0.00 37.42 2.83
3039 5163 3.603857 GCGCGCGAACTATGATTTATTGT 60.604 43.478 37.18 0.00 0.00 2.71
3040 5164 2.896410 GCGCGCGAACTATGATTTATTG 59.104 45.455 37.18 0.00 0.00 1.90
3041 5165 2.542178 TGCGCGCGAACTATGATTTATT 59.458 40.909 37.18 0.00 0.00 1.40
3042 5166 2.131972 TGCGCGCGAACTATGATTTAT 58.868 42.857 37.18 0.00 0.00 1.40
3043 5167 1.562017 TGCGCGCGAACTATGATTTA 58.438 45.000 37.18 0.00 0.00 1.40
3044 5168 0.724549 TTGCGCGCGAACTATGATTT 59.275 45.000 37.18 0.00 0.00 2.17
3045 5169 0.724549 TTTGCGCGCGAACTATGATT 59.275 45.000 37.18 0.00 0.00 2.57
3046 5170 0.937304 ATTTGCGCGCGAACTATGAT 59.063 45.000 34.54 16.11 0.00 2.45
3047 5171 1.562017 TATTTGCGCGCGAACTATGA 58.438 45.000 34.54 13.53 0.00 2.15
3048 5172 4.974468 ATTTGCGCGCGAACTATG 57.026 50.000 34.54 2.07 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.