Multiple sequence alignment - TraesCS1A01G306000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G306000 chr1A 100.000 3196 0 0 1 3196 498176684 498173489 0.000000e+00 5903.0
1 TraesCS1A01G306000 chr1A 92.241 116 8 1 1748 1863 391675058 391675172 2.550000e-36 163.0
2 TraesCS1A01G306000 chr1A 95.098 102 5 0 1756 1857 56105907 56105806 9.170000e-36 161.0
3 TraesCS1A01G306000 chr1A 94.286 105 5 1 1756 1860 501685356 501685459 3.300000e-35 159.0
4 TraesCS1A01G306000 chr1D 92.004 1088 50 16 683 1753 403060716 403059649 0.000000e+00 1493.0
5 TraesCS1A01G306000 chr1D 86.326 724 55 17 1870 2576 403059631 403058935 0.000000e+00 749.0
6 TraesCS1A01G306000 chr1D 87.448 478 34 14 1 478 403061203 403060752 7.850000e-146 527.0
7 TraesCS1A01G306000 chr1D 82.086 374 53 11 2650 3015 37961132 37961499 1.110000e-79 307.0
8 TraesCS1A01G306000 chr1D 98.148 54 1 0 3143 3196 403058483 403058430 9.440000e-16 95.3
9 TraesCS1A01G306000 chr1B 90.616 1087 62 18 683 1753 541012673 541011611 0.000000e+00 1406.0
10 TraesCS1A01G306000 chr1B 83.359 655 44 24 1950 2576 541011495 541010878 2.170000e-151 545.0
11 TraesCS1A01G306000 chr1B 89.474 380 24 9 192 561 541013169 541012796 1.740000e-127 466.0
12 TraesCS1A01G306000 chr1B 83.149 362 46 8 2659 3013 328153566 328153213 1.850000e-82 316.0
13 TraesCS1A01G306000 chr1B 95.238 105 5 0 1756 1860 250409448 250409552 1.970000e-37 167.0
14 TraesCS1A01G306000 chr1B 87.681 138 9 3 14 151 541016337 541016208 1.540000e-33 154.0
15 TraesCS1A01G306000 chr1B 91.304 46 0 3 3131 3172 541009908 541009863 3.440000e-05 60.2
16 TraesCS1A01G306000 chr5A 83.467 375 46 11 2653 3015 342046527 342046157 5.110000e-88 335.0
17 TraesCS1A01G306000 chr5A 81.016 374 56 10 2650 3015 637103438 637103804 1.880000e-72 283.0
18 TraesCS1A01G306000 chr3B 83.776 339 46 6 2680 3015 530240121 530240453 2.390000e-81 313.0
19 TraesCS1A01G306000 chr7D 81.794 379 49 13 2650 3015 618259790 618260161 1.860000e-77 300.0
20 TraesCS1A01G306000 chr5B 81.698 377 52 12 2650 3015 405499053 405499423 6.700000e-77 298.0
21 TraesCS1A01G306000 chr5D 81.501 373 52 13 2653 3015 338382310 338381945 1.120000e-74 291.0
22 TraesCS1A01G306000 chrUn 81.234 389 46 15 2652 3026 262553697 262554072 4.030000e-74 289.0
23 TraesCS1A01G306000 chr4B 93.913 115 3 3 1756 1868 5927456 5927344 1.520000e-38 171.0
24 TraesCS1A01G306000 chr2B 94.444 108 6 0 1756 1863 554728319 554728212 1.970000e-37 167.0
25 TraesCS1A01G306000 chr2B 95.192 104 4 1 1756 1858 25365995 25366098 2.550000e-36 163.0
26 TraesCS1A01G306000 chr6B 95.146 103 5 0 1756 1858 599445714 599445612 2.550000e-36 163.0
27 TraesCS1A01G306000 chr4A 93.519 108 7 0 1756 1863 113861397 113861290 9.170000e-36 161.0
28 TraesCS1A01G306000 chr7A 100.000 28 0 0 272 299 400907473 400907446 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G306000 chr1A 498173489 498176684 3195 True 5903.000 5903 100.0000 1 3196 1 chr1A.!!$R2 3195
1 TraesCS1A01G306000 chr1D 403058430 403061203 2773 True 716.075 1493 90.9815 1 3196 4 chr1D.!!$R1 3195
2 TraesCS1A01G306000 chr1B 541009863 541016337 6474 True 526.240 1406 88.4868 14 3172 5 chr1B.!!$R2 3158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 3371 0.109827 TCGACCATCGCGTTCGTTTA 60.11 50.0 5.77 0.0 40.21 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 5361 0.109153 ACACACTGAGAAGCATGCCA 59.891 50.0 15.66 3.92 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.302511 GGGAGAAAGAAGGCACGCA 60.303 57.895 0.00 0.00 0.00 5.24
79 80 1.279840 GCACGCACTCCACTTTGAC 59.720 57.895 0.00 0.00 0.00 3.18
140 141 0.593263 GCAAGAACAGCTGTGTGTGC 60.593 55.000 22.49 23.77 36.84 4.57
158 159 3.502455 ACTGCCATGCACGCATCG 61.502 61.111 10.51 0.00 35.25 3.84
199 3204 1.740664 TCTGTCGTCCTCGTCCTCG 60.741 63.158 0.00 0.00 38.33 4.63
203 3208 2.436292 CGTCCTCGTCCTCGTCCT 60.436 66.667 0.00 0.00 38.33 3.85
205 3210 2.114051 GTCCTCGTCCTCGTCCTCC 61.114 68.421 0.00 0.00 38.33 4.30
206 3211 2.272797 CCTCGTCCTCGTCCTCCT 59.727 66.667 0.00 0.00 38.33 3.69
207 3212 1.820481 CCTCGTCCTCGTCCTCCTC 60.820 68.421 0.00 0.00 38.33 3.71
208 3213 1.820481 CTCGTCCTCGTCCTCCTCC 60.820 68.421 0.00 0.00 38.33 4.30
209 3214 2.045242 CGTCCTCGTCCTCCTCCA 60.045 66.667 0.00 0.00 0.00 3.86
210 3215 2.115911 CGTCCTCGTCCTCCTCCAG 61.116 68.421 0.00 0.00 0.00 3.86
211 3216 2.043852 TCCTCGTCCTCCTCCAGC 60.044 66.667 0.00 0.00 0.00 4.85
284 3289 2.289072 CGGACAAGGAAGAAGAAGAGCA 60.289 50.000 0.00 0.00 0.00 4.26
299 3304 1.111277 GAGCAGGAGGAGGAGAAGAC 58.889 60.000 0.00 0.00 0.00 3.01
341 3347 0.984230 TGGGAATGGCGGGATAGATC 59.016 55.000 0.00 0.00 0.00 2.75
358 3370 0.734942 ATCGACCATCGCGTTCGTTT 60.735 50.000 5.77 1.07 40.21 3.60
359 3371 0.109827 TCGACCATCGCGTTCGTTTA 60.110 50.000 5.77 0.00 40.21 2.01
360 3372 0.918619 CGACCATCGCGTTCGTTTAT 59.081 50.000 5.77 0.00 36.96 1.40
361 3373 1.330818 CGACCATCGCGTTCGTTTATG 60.331 52.381 5.77 0.00 36.96 1.90
362 3374 1.921887 GACCATCGCGTTCGTTTATGA 59.078 47.619 5.77 0.00 36.96 2.15
363 3375 1.924524 ACCATCGCGTTCGTTTATGAG 59.075 47.619 5.77 0.00 36.96 2.90
405 3417 2.180017 CTTGCTGCCGTCATTGCC 59.820 61.111 0.00 0.00 0.00 4.52
406 3418 3.672255 CTTGCTGCCGTCATTGCCG 62.672 63.158 0.00 0.00 0.00 5.69
411 3423 3.825611 GCCGTCATTGCCGCCATT 61.826 61.111 0.00 0.00 0.00 3.16
412 3424 2.102749 CCGTCATTGCCGCCATTG 59.897 61.111 0.00 0.00 0.00 2.82
413 3425 2.580326 CGTCATTGCCGCCATTGC 60.580 61.111 0.00 0.00 0.00 3.56
414 3426 2.887360 GTCATTGCCGCCATTGCT 59.113 55.556 0.00 0.00 34.43 3.91
438 3450 0.401738 AACAGCCTCCAAAGCTAGCA 59.598 50.000 18.83 0.00 38.95 3.49
475 3489 2.983907 TCCACAACACGTACTGGAAA 57.016 45.000 0.00 0.00 29.50 3.13
480 3494 1.263217 CAACACGTACTGGAAAGCACC 59.737 52.381 0.00 0.00 0.00 5.01
496 3510 0.393673 CACCATGCACGGGGTCATTA 60.394 55.000 2.80 0.00 34.45 1.90
506 3520 2.092592 ACGGGGTCATTATTTCTCCCAC 60.093 50.000 0.00 0.00 39.85 4.61
535 3549 5.046878 TCAATCTCCATTTTGCAGCAAGAAT 60.047 36.000 8.12 8.53 0.00 2.40
554 3570 6.114187 AGAATTGAGTGTCCATTGTAGACA 57.886 37.500 0.00 0.00 41.84 3.41
570 3616 1.000283 AGACACACGGAGAGCTTTCTG 60.000 52.381 11.43 11.43 0.00 3.02
579 3625 1.803555 GAGAGCTTTCTGAGTGGTTGC 59.196 52.381 0.00 0.00 0.00 4.17
594 3640 1.684248 GGTTGCAGAGCTTGATGGGAT 60.684 52.381 0.00 0.00 0.00 3.85
596 3642 0.622136 TGCAGAGCTTGATGGGATGT 59.378 50.000 0.00 0.00 0.00 3.06
613 3659 3.553096 GGATGTGAATTCTCGTATCCGCT 60.553 47.826 7.05 0.00 31.15 5.52
644 3690 2.617250 TCACGCTGTTTCATTCATGC 57.383 45.000 0.00 0.00 0.00 4.06
660 3706 5.486735 TTCATGCCAAATTCTCACCAAAT 57.513 34.783 0.00 0.00 0.00 2.32
661 3707 5.486735 TCATGCCAAATTCTCACCAAATT 57.513 34.783 0.00 0.00 0.00 1.82
662 3708 5.867330 TCATGCCAAATTCTCACCAAATTT 58.133 33.333 0.00 0.00 36.91 1.82
663 3709 5.701750 TCATGCCAAATTCTCACCAAATTTG 59.298 36.000 11.40 11.40 46.43 2.32
664 3710 5.033589 TGCCAAATTCTCACCAAATTTGT 57.966 34.783 16.73 2.76 45.87 2.83
665 3711 4.815308 TGCCAAATTCTCACCAAATTTGTG 59.185 37.500 16.73 14.01 45.87 3.33
666 3712 4.815846 GCCAAATTCTCACCAAATTTGTGT 59.184 37.500 16.73 11.18 45.87 3.72
667 3713 5.296531 GCCAAATTCTCACCAAATTTGTGTT 59.703 36.000 16.73 0.00 45.87 3.32
668 3714 6.511605 GCCAAATTCTCACCAAATTTGTGTTC 60.512 38.462 16.73 0.00 45.87 3.18
669 3715 6.538021 CCAAATTCTCACCAAATTTGTGTTCA 59.462 34.615 16.73 3.60 45.87 3.18
670 3716 7.065563 CCAAATTCTCACCAAATTTGTGTTCAA 59.934 33.333 16.73 4.81 45.87 2.69
671 3717 8.449397 CAAATTCTCACCAAATTTGTGTTCAAA 58.551 29.630 16.73 4.86 43.89 2.69
672 3718 8.558973 AATTCTCACCAAATTTGTGTTCAAAA 57.441 26.923 16.73 3.43 44.97 2.44
673 3719 7.969536 TTCTCACCAAATTTGTGTTCAAAAA 57.030 28.000 16.73 0.00 44.97 1.94
726 3774 6.770303 TCCTGCGAATCCTAGAGATAGATATG 59.230 42.308 0.00 0.00 33.66 1.78
855 3903 1.124297 CGCTGCACGGCTATATAAACG 59.876 52.381 0.00 4.67 38.44 3.60
858 3906 1.202545 TGCACGGCTATATAAACGCCA 60.203 47.619 11.01 4.70 43.95 5.69
885 3935 1.516386 CCGCCACTGCACTACTACG 60.516 63.158 0.00 0.00 37.32 3.51
886 3936 2.158959 CGCCACTGCACTACTACGC 61.159 63.158 0.00 0.00 37.32 4.42
939 3998 2.177580 CGTCCGCCACCGCATTAAT 61.178 57.895 0.00 0.00 34.03 1.40
942 4001 1.010125 CCGCCACCGCATTAATTCG 60.010 57.895 0.13 0.13 34.03 3.34
943 4002 1.654137 CGCCACCGCATTAATTCGC 60.654 57.895 1.68 0.00 34.03 4.70
944 4003 1.727467 GCCACCGCATTAATTCGCT 59.273 52.632 1.68 0.00 34.03 4.93
1204 4270 1.150827 CAACTCGCTGCTCAACATGA 58.849 50.000 0.00 0.00 0.00 3.07
1451 4517 2.764439 AAACTAACTCGAGCCCTTCC 57.236 50.000 13.61 0.00 0.00 3.46
1483 4550 0.654683 CGCTGGATTTGCTGCTCTAC 59.345 55.000 0.00 0.00 0.00 2.59
1492 4563 2.693267 TGCTGCTCTACGAGTCTCTA 57.307 50.000 0.00 0.00 31.39 2.43
1509 4580 6.825610 AGTCTCTATTGAGGTGGATTTGATC 58.174 40.000 4.29 0.00 40.58 2.92
1668 4739 7.667557 TGCAGTACTAGTAGAATTTCAGTTGT 58.332 34.615 1.87 0.00 0.00 3.32
1671 4742 7.063544 CAGTACTAGTAGAATTTCAGTTGTGGC 59.936 40.741 1.87 0.00 0.00 5.01
1723 4794 5.312079 CAAGAGTCAAAGACCAAGAGGAAT 58.688 41.667 0.00 0.00 38.69 3.01
1760 4831 9.751542 AAGAAATTGATAGTACTAGATGTTCGG 57.248 33.333 8.85 0.00 0.00 4.30
1761 4832 9.132923 AGAAATTGATAGTACTAGATGTTCGGA 57.867 33.333 8.85 0.00 0.00 4.55
1762 4833 9.745880 GAAATTGATAGTACTAGATGTTCGGAA 57.254 33.333 8.85 0.00 0.00 4.30
1767 4838 9.570468 TGATAGTACTAGATGTTCGGAATTACT 57.430 33.333 8.85 0.00 0.00 2.24
1770 4841 8.064336 AGTACTAGATGTTCGGAATTACTTGT 57.936 34.615 0.00 4.10 0.00 3.16
1771 4842 8.189460 AGTACTAGATGTTCGGAATTACTTGTC 58.811 37.037 0.00 0.00 0.00 3.18
1772 4843 7.171630 ACTAGATGTTCGGAATTACTTGTCT 57.828 36.000 0.00 0.00 0.00 3.41
1773 4844 7.259161 ACTAGATGTTCGGAATTACTTGTCTC 58.741 38.462 0.00 0.00 0.00 3.36
1774 4845 5.103000 AGATGTTCGGAATTACTTGTCTCG 58.897 41.667 0.00 0.00 0.00 4.04
1775 4846 4.508461 TGTTCGGAATTACTTGTCTCGA 57.492 40.909 0.00 0.00 0.00 4.04
1776 4847 4.873817 TGTTCGGAATTACTTGTCTCGAA 58.126 39.130 0.00 0.00 33.66 3.71
1777 4848 5.291178 TGTTCGGAATTACTTGTCTCGAAA 58.709 37.500 0.00 0.00 37.00 3.46
1778 4849 5.754406 TGTTCGGAATTACTTGTCTCGAAAA 59.246 36.000 0.00 0.00 37.00 2.29
1779 4850 6.425721 TGTTCGGAATTACTTGTCTCGAAAAT 59.574 34.615 0.00 0.00 37.00 1.82
1780 4851 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
1781 4852 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
1782 4853 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
1783 4854 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
1784 4855 7.189512 GGAATTACTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
1785 4856 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
1786 4857 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
1787 4858 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1788 4859 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
1789 4860 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
1790 4861 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
1791 4862 8.258007 ACTTGTCTCGAAAATGGATGTATCTAA 58.742 33.333 0.00 0.00 0.00 2.10
1792 4863 9.098355 CTTGTCTCGAAAATGGATGTATCTAAA 57.902 33.333 0.00 0.00 0.00 1.85
1793 4864 9.443323 TTGTCTCGAAAATGGATGTATCTAAAA 57.557 29.630 0.00 0.00 0.00 1.52
1794 4865 8.879759 TGTCTCGAAAATGGATGTATCTAAAAC 58.120 33.333 0.00 0.00 0.00 2.43
1795 4866 9.099454 GTCTCGAAAATGGATGTATCTAAAACT 57.901 33.333 0.00 0.00 0.00 2.66
1824 4895 9.730420 AATACGTTTAGATACATCCATTTTTGC 57.270 29.630 0.00 0.00 0.00 3.68
1825 4896 6.255215 ACGTTTAGATACATCCATTTTTGCG 58.745 36.000 0.00 0.00 0.00 4.85
1826 4897 6.092944 ACGTTTAGATACATCCATTTTTGCGA 59.907 34.615 0.00 0.00 0.00 5.10
1827 4898 6.410914 CGTTTAGATACATCCATTTTTGCGAC 59.589 38.462 0.00 0.00 0.00 5.19
1828 4899 6.993786 TTAGATACATCCATTTTTGCGACA 57.006 33.333 0.00 0.00 0.00 4.35
1829 4900 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
1830 4901 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
1831 4902 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
1832 4903 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
1833 4904 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
1834 4905 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
1835 4906 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
1836 4907 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
1837 4908 5.465935 TCCATTTTTGCGACAAGTAATTCC 58.534 37.500 0.00 0.00 0.00 3.01
1838 4909 4.323336 CCATTTTTGCGACAAGTAATTCCG 59.677 41.667 0.00 0.00 0.00 4.30
1839 4910 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
1840 4911 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
1841 4912 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
1842 4913 2.756829 TGCGACAAGTAATTCCGAACA 58.243 42.857 0.00 0.00 0.00 3.18
1843 4914 2.734606 TGCGACAAGTAATTCCGAACAG 59.265 45.455 0.00 0.00 0.00 3.16
1844 4915 2.991190 GCGACAAGTAATTCCGAACAGA 59.009 45.455 0.00 0.00 0.00 3.41
1845 4916 3.060895 GCGACAAGTAATTCCGAACAGAG 59.939 47.826 0.00 0.00 0.00 3.35
1847 4918 3.933332 GACAAGTAATTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1911 4982 4.065789 AGAGAAAAACCGAAGTAAGGCTG 58.934 43.478 0.00 0.00 0.00 4.85
1914 4985 4.515567 AGAAAAACCGAAGTAAGGCTGAAG 59.484 41.667 0.00 0.00 0.00 3.02
1945 5023 2.473816 CCACATGTATGCTCGTAGGTG 58.526 52.381 0.00 0.00 0.00 4.00
1953 5031 1.763968 TGCTCGTAGGTGCAGAGTAT 58.236 50.000 8.00 0.00 34.11 2.12
2005 5107 0.459899 CGTACTAGTGCCATGGAGCA 59.540 55.000 18.40 3.80 41.46 4.26
2028 5130 5.239744 CAGAGTACTGCAGTGGTATAGTAGG 59.760 48.000 29.57 3.83 37.33 3.18
2047 5151 7.446001 AGTAGGCGTACAACTAATATACTCC 57.554 40.000 18.13 0.00 0.00 3.85
2048 5152 7.230027 AGTAGGCGTACAACTAATATACTCCT 58.770 38.462 18.13 0.00 37.67 3.69
2049 5153 6.328641 AGGCGTACAACTAATATACTCCTG 57.671 41.667 0.00 0.00 33.72 3.86
2183 5287 3.486252 CTCCTTCGCCGTCGGGATC 62.486 68.421 14.38 0.00 36.13 3.36
2185 5289 4.189188 CTTCGCCGTCGGGATCGT 62.189 66.667 14.38 0.00 37.69 3.73
2203 5307 1.719780 CGTGTTCTTCTAAGCGGACAC 59.280 52.381 10.91 10.91 34.12 3.67
2252 5360 3.896648 AAAAACTGTCGCGTGAATGAT 57.103 38.095 5.77 0.00 0.00 2.45
2253 5361 3.896648 AAAACTGTCGCGTGAATGATT 57.103 38.095 5.77 0.00 0.00 2.57
2254 5362 2.880822 AACTGTCGCGTGAATGATTG 57.119 45.000 5.77 0.00 0.00 2.67
2256 5364 0.247814 CTGTCGCGTGAATGATTGGC 60.248 55.000 5.77 0.00 0.00 4.52
2258 5366 0.378257 GTCGCGTGAATGATTGGCAT 59.622 50.000 5.77 0.00 39.43 4.40
2259 5367 0.377905 TCGCGTGAATGATTGGCATG 59.622 50.000 5.77 0.00 37.28 4.06
2260 5368 1.204228 CGCGTGAATGATTGGCATGC 61.204 55.000 9.90 9.90 40.26 4.06
2261 5369 0.101759 GCGTGAATGATTGGCATGCT 59.898 50.000 18.92 0.00 40.44 3.79
2262 5370 1.470285 GCGTGAATGATTGGCATGCTT 60.470 47.619 18.92 1.93 40.44 3.91
2263 5371 2.456989 CGTGAATGATTGGCATGCTTC 58.543 47.619 18.92 12.54 37.28 3.86
2265 5373 3.703420 GTGAATGATTGGCATGCTTCTC 58.297 45.455 18.92 11.75 37.28 2.87
2266 5374 3.129813 GTGAATGATTGGCATGCTTCTCA 59.870 43.478 18.92 16.79 37.28 3.27
2267 5375 3.380320 TGAATGATTGGCATGCTTCTCAG 59.620 43.478 18.92 0.00 37.28 3.35
2272 5392 0.109153 TGGCATGCTTCTCAGTGTGT 59.891 50.000 18.92 0.00 0.00 3.72
2303 5423 9.469097 GTACTCCAGTATGATGATTCTAGGTAT 57.531 37.037 0.00 0.00 39.69 2.73
2305 5425 9.693739 ACTCCAGTATGATGATTCTAGGTATAG 57.306 37.037 0.00 0.00 39.69 1.31
2306 5426 9.693739 CTCCAGTATGATGATTCTAGGTATAGT 57.306 37.037 0.00 0.00 39.69 2.12
2333 5453 9.760077 AGATAAATACAGTACCAGTTATTTCCG 57.240 33.333 0.00 0.00 0.00 4.30
2339 5459 1.541379 ACCAGTTATTTCCGGCCAAC 58.459 50.000 2.24 0.00 0.00 3.77
2369 5489 6.564709 TGTGCTATGCTAATCAATTGATCC 57.435 37.500 20.95 12.71 32.75 3.36
2380 5500 1.590238 CAATTGATCCGTCGCTCACTC 59.410 52.381 0.00 0.00 0.00 3.51
2398 5518 3.364023 CACTCATAAACTCGTTCGTGACC 59.636 47.826 1.45 0.00 0.00 4.02
2402 5522 2.135664 AAACTCGTTCGTGACCTGAG 57.864 50.000 1.45 0.00 0.00 3.35
2467 5587 2.001812 CATCACACCTTCCTCGTGAG 57.998 55.000 0.00 0.00 42.53 3.51
2468 5588 1.273606 CATCACACCTTCCTCGTGAGT 59.726 52.381 0.00 0.00 42.53 3.41
2469 5589 0.959553 TCACACCTTCCTCGTGAGTC 59.040 55.000 0.00 0.00 34.83 3.36
2470 5590 0.387367 CACACCTTCCTCGTGAGTCG 60.387 60.000 0.00 0.00 41.41 4.18
2471 5591 0.822532 ACACCTTCCTCGTGAGTCGT 60.823 55.000 0.00 0.00 40.80 4.34
2472 5592 0.387367 CACCTTCCTCGTGAGTCGTG 60.387 60.000 0.00 0.00 40.80 4.35
2473 5593 0.536687 ACCTTCCTCGTGAGTCGTGA 60.537 55.000 0.00 0.00 40.80 4.35
2474 5594 0.109689 CCTTCCTCGTGAGTCGTGAC 60.110 60.000 0.00 0.00 40.80 3.67
2475 5595 0.452950 CTTCCTCGTGAGTCGTGACG 60.453 60.000 0.00 0.00 40.80 4.35
2476 5596 2.453773 TTCCTCGTGAGTCGTGACGC 62.454 60.000 0.00 0.00 40.80 5.19
2477 5597 2.502080 CTCGTGAGTCGTGACGCC 60.502 66.667 0.00 0.00 40.80 5.68
2478 5598 4.379143 TCGTGAGTCGTGACGCCG 62.379 66.667 0.00 5.11 40.80 6.46
2479 5599 4.379143 CGTGAGTCGTGACGCCGA 62.379 66.667 0.00 0.00 36.20 5.54
2480 5600 2.502080 GTGAGTCGTGACGCCGAG 60.502 66.667 0.00 0.00 37.56 4.63
2481 5601 4.400109 TGAGTCGTGACGCCGAGC 62.400 66.667 0.00 0.00 37.56 5.03
2526 5646 1.060937 CGCATCAACTAAGCGTGCC 59.939 57.895 0.00 0.00 45.82 5.01
2554 5674 1.406539 GGTTGCCATGCTCCATTACAG 59.593 52.381 0.00 0.00 0.00 2.74
2569 5689 4.396166 CCATTACAGCACGAAATTCCTTCT 59.604 41.667 0.00 0.00 31.20 2.85
2582 5702 6.575162 AAATTCCTTCTAATTTCGTGCTGT 57.425 33.333 0.00 0.00 34.71 4.40
2583 5703 7.681939 AAATTCCTTCTAATTTCGTGCTGTA 57.318 32.000 0.00 0.00 34.71 2.74
2584 5704 6.663944 ATTCCTTCTAATTTCGTGCTGTAC 57.336 37.500 0.00 0.00 0.00 2.90
2585 5705 5.401531 TCCTTCTAATTTCGTGCTGTACT 57.598 39.130 0.00 0.00 0.00 2.73
2596 5716 3.124128 TCGTGCTGTACTCTACTAACACG 59.876 47.826 5.90 5.90 43.88 4.49
2597 5717 3.727079 CGTGCTGTACTCTACTAACACGG 60.727 52.174 0.00 0.00 41.52 4.94
2600 5720 4.393062 TGCTGTACTCTACTAACACGGTAC 59.607 45.833 0.00 0.00 0.00 3.34
2601 5721 4.393062 GCTGTACTCTACTAACACGGTACA 59.607 45.833 0.00 0.00 37.67 2.90
2602 5722 5.065731 GCTGTACTCTACTAACACGGTACAT 59.934 44.000 0.00 0.00 38.75 2.29
2603 5723 6.404074 GCTGTACTCTACTAACACGGTACATT 60.404 42.308 0.00 0.00 38.75 2.71
2604 5724 7.201644 GCTGTACTCTACTAACACGGTACATTA 60.202 40.741 0.00 0.00 38.75 1.90
2605 5725 7.974675 TGTACTCTACTAACACGGTACATTAC 58.025 38.462 0.00 0.00 35.94 1.89
2615 5735 3.484649 CACGGTACATTACGTATGAGTGC 59.515 47.826 0.00 0.00 42.04 4.40
2616 5736 3.129113 ACGGTACATTACGTATGAGTGCA 59.871 43.478 0.00 0.00 42.15 4.57
2618 5738 4.148174 CGGTACATTACGTATGAGTGCATG 59.852 45.833 0.00 0.00 37.69 4.06
2619 5739 5.286438 GGTACATTACGTATGAGTGCATGA 58.714 41.667 0.00 0.00 37.69 3.07
2622 5742 6.291067 ACATTACGTATGAGTGCATGAATG 57.709 37.500 0.00 3.60 37.69 2.67
2624 5744 6.983890 ACATTACGTATGAGTGCATGAATGTA 59.016 34.615 0.00 0.00 35.50 2.29
2625 5745 7.657354 ACATTACGTATGAGTGCATGAATGTAT 59.343 33.333 0.00 0.00 35.50 2.29
2626 5746 5.912360 ACGTATGAGTGCATGAATGTATG 57.088 39.130 0.00 0.00 35.94 2.39
2643 5763 8.662141 TGAATGTATGCTCAATCATTCATATCG 58.338 33.333 19.07 0.00 45.79 2.92
2644 5764 6.413018 TGTATGCTCAATCATTCATATCGC 57.587 37.500 0.00 0.00 0.00 4.58
2645 5765 4.595198 ATGCTCAATCATTCATATCGCG 57.405 40.909 0.00 0.00 0.00 5.87
2646 5766 2.738314 TGCTCAATCATTCATATCGCGG 59.262 45.455 6.13 0.00 0.00 6.46
2647 5767 2.094894 GCTCAATCATTCATATCGCGGG 59.905 50.000 6.13 0.00 0.00 6.13
2648 5768 2.674852 CTCAATCATTCATATCGCGGGG 59.325 50.000 6.13 0.00 0.00 5.73
2649 5769 2.301583 TCAATCATTCATATCGCGGGGA 59.698 45.455 6.13 0.00 0.00 4.81
2650 5770 2.386661 ATCATTCATATCGCGGGGAC 57.613 50.000 6.13 0.00 0.00 4.46
2651 5771 1.044611 TCATTCATATCGCGGGGACA 58.955 50.000 6.13 0.00 0.00 4.02
2652 5772 1.623311 TCATTCATATCGCGGGGACAT 59.377 47.619 6.13 0.00 0.00 3.06
2653 5773 2.038426 TCATTCATATCGCGGGGACATT 59.962 45.455 6.13 0.00 0.00 2.71
2654 5774 2.631160 TTCATATCGCGGGGACATTT 57.369 45.000 6.13 0.00 0.00 2.32
2655 5775 3.755112 TTCATATCGCGGGGACATTTA 57.245 42.857 6.13 0.00 0.00 1.40
2656 5776 3.313012 TCATATCGCGGGGACATTTAG 57.687 47.619 6.13 0.00 0.00 1.85
2657 5777 2.894765 TCATATCGCGGGGACATTTAGA 59.105 45.455 6.13 0.00 0.00 2.10
2658 5778 3.513912 TCATATCGCGGGGACATTTAGAT 59.486 43.478 6.13 0.00 0.00 1.98
2659 5779 2.169832 ATCGCGGGGACATTTAGATG 57.830 50.000 6.13 0.00 39.25 2.90
2660 5780 1.116308 TCGCGGGGACATTTAGATGA 58.884 50.000 6.13 0.00 36.73 2.92
2661 5781 1.068588 TCGCGGGGACATTTAGATGAG 59.931 52.381 6.13 0.00 36.73 2.90
2662 5782 1.068588 CGCGGGGACATTTAGATGAGA 59.931 52.381 0.00 0.00 36.73 3.27
2663 5783 2.289072 CGCGGGGACATTTAGATGAGAT 60.289 50.000 0.00 0.00 36.73 2.75
2664 5784 3.744660 GCGGGGACATTTAGATGAGATT 58.255 45.455 0.00 0.00 36.73 2.40
2665 5785 3.499918 GCGGGGACATTTAGATGAGATTG 59.500 47.826 0.00 0.00 36.73 2.67
2666 5786 4.708177 CGGGGACATTTAGATGAGATTGT 58.292 43.478 0.00 0.00 36.73 2.71
2667 5787 4.752101 CGGGGACATTTAGATGAGATTGTC 59.248 45.833 0.00 0.00 36.73 3.18
2668 5788 5.684704 GGGGACATTTAGATGAGATTGTCA 58.315 41.667 0.00 0.00 40.38 3.58
2669 5789 5.762218 GGGGACATTTAGATGAGATTGTCAG 59.238 44.000 0.00 0.00 39.07 3.51
2670 5790 6.408548 GGGGACATTTAGATGAGATTGTCAGA 60.409 42.308 0.00 0.00 39.07 3.27
2671 5791 7.222872 GGGACATTTAGATGAGATTGTCAGAT 58.777 38.462 0.00 0.00 39.07 2.90
2672 5792 7.387397 GGGACATTTAGATGAGATTGTCAGATC 59.613 40.741 0.00 0.00 39.07 2.75
2673 5793 7.930325 GGACATTTAGATGAGATTGTCAGATCA 59.070 37.037 0.00 0.00 39.07 2.92
2674 5794 9.322773 GACATTTAGATGAGATTGTCAGATCAA 57.677 33.333 0.00 0.00 39.07 2.57
2675 5795 9.107177 ACATTTAGATGAGATTGTCAGATCAAC 57.893 33.333 0.00 0.00 39.07 3.18
2676 5796 8.557864 CATTTAGATGAGATTGTCAGATCAACC 58.442 37.037 0.00 0.00 39.07 3.77
2677 5797 5.033589 AGATGAGATTGTCAGATCAACCC 57.966 43.478 0.00 0.00 39.07 4.11
2678 5798 4.720773 AGATGAGATTGTCAGATCAACCCT 59.279 41.667 0.00 0.00 39.07 4.34
2679 5799 5.901853 AGATGAGATTGTCAGATCAACCCTA 59.098 40.000 0.00 0.00 39.07 3.53
2680 5800 6.385176 AGATGAGATTGTCAGATCAACCCTAA 59.615 38.462 0.00 0.00 39.07 2.69
2681 5801 6.373005 TGAGATTGTCAGATCAACCCTAAA 57.627 37.500 0.00 0.00 0.00 1.85
2682 5802 6.778821 TGAGATTGTCAGATCAACCCTAAAA 58.221 36.000 0.00 0.00 0.00 1.52
2683 5803 7.230747 TGAGATTGTCAGATCAACCCTAAAAA 58.769 34.615 0.00 0.00 0.00 1.94
2736 5856 9.685276 TCTGAAATTATTTGAGTACATCCATGT 57.315 29.630 4.26 0.00 44.48 3.21
2737 5857 9.726232 CTGAAATTATTTGAGTACATCCATGTG 57.274 33.333 2.26 0.00 41.89 3.21
2738 5858 8.685427 TGAAATTATTTGAGTACATCCATGTGG 58.315 33.333 2.26 0.00 41.89 4.17
2739 5859 7.587037 AATTATTTGAGTACATCCATGTGGG 57.413 36.000 2.26 0.00 41.89 4.61
2740 5860 3.364460 TTTGAGTACATCCATGTGGGG 57.636 47.619 2.26 0.00 41.89 4.96
2741 5861 1.965414 TGAGTACATCCATGTGGGGT 58.035 50.000 2.26 1.31 41.89 4.95
2742 5862 3.123392 TGAGTACATCCATGTGGGGTA 57.877 47.619 2.26 0.39 41.89 3.69
2743 5863 3.664320 TGAGTACATCCATGTGGGGTAT 58.336 45.455 2.26 0.00 41.89 2.73
2744 5864 3.390967 TGAGTACATCCATGTGGGGTATG 59.609 47.826 2.26 0.00 41.89 2.39
2745 5865 3.391296 GAGTACATCCATGTGGGGTATGT 59.609 47.826 2.26 9.10 41.89 2.29
2746 5866 3.391296 AGTACATCCATGTGGGGTATGTC 59.609 47.826 7.80 2.73 41.89 3.06
2747 5867 2.492025 ACATCCATGTGGGGTATGTCT 58.508 47.619 0.00 0.00 40.03 3.41
2748 5868 2.173356 ACATCCATGTGGGGTATGTCTG 59.827 50.000 0.00 0.00 40.03 3.51
2749 5869 0.546122 TCCATGTGGGGTATGTCTGC 59.454 55.000 0.00 0.00 37.22 4.26
2750 5870 0.255604 CCATGTGGGGTATGTCTGCA 59.744 55.000 0.00 0.00 0.00 4.41
2751 5871 1.340893 CCATGTGGGGTATGTCTGCAA 60.341 52.381 0.00 0.00 0.00 4.08
2752 5872 1.745087 CATGTGGGGTATGTCTGCAAC 59.255 52.381 0.00 0.00 0.00 4.17
2753 5873 1.064003 TGTGGGGTATGTCTGCAACT 58.936 50.000 0.00 0.00 0.00 3.16
2754 5874 1.003118 TGTGGGGTATGTCTGCAACTC 59.997 52.381 0.00 0.00 0.00 3.01
2755 5875 0.618458 TGGGGTATGTCTGCAACTCC 59.382 55.000 0.00 0.00 0.00 3.85
2756 5876 0.462047 GGGGTATGTCTGCAACTCCG 60.462 60.000 0.00 0.00 0.00 4.63
2757 5877 0.462047 GGGTATGTCTGCAACTCCGG 60.462 60.000 0.00 0.00 0.00 5.14
2758 5878 0.535335 GGTATGTCTGCAACTCCGGA 59.465 55.000 2.93 2.93 0.00 5.14
2759 5879 1.066430 GGTATGTCTGCAACTCCGGAA 60.066 52.381 5.23 0.00 0.00 4.30
2760 5880 2.614481 GGTATGTCTGCAACTCCGGAAA 60.614 50.000 5.23 0.00 0.00 3.13
2761 5881 2.270352 ATGTCTGCAACTCCGGAAAA 57.730 45.000 5.23 0.00 0.00 2.29
2762 5882 2.045561 TGTCTGCAACTCCGGAAAAA 57.954 45.000 5.23 0.00 0.00 1.94
2785 5905 5.695851 AAAATCAGCTGAAAACTCGATGT 57.304 34.783 22.50 0.00 0.00 3.06
2786 5906 6.801539 AAAATCAGCTGAAAACTCGATGTA 57.198 33.333 22.50 0.00 0.00 2.29
2787 5907 5.786401 AATCAGCTGAAAACTCGATGTAC 57.214 39.130 22.50 0.00 0.00 2.90
2788 5908 4.251543 TCAGCTGAAAACTCGATGTACA 57.748 40.909 15.67 0.00 0.00 2.90
2789 5909 4.820897 TCAGCTGAAAACTCGATGTACAT 58.179 39.130 15.67 8.43 0.00 2.29
2790 5910 5.237815 TCAGCTGAAAACTCGATGTACATT 58.762 37.500 15.67 0.00 0.00 2.71
2791 5911 5.700832 TCAGCTGAAAACTCGATGTACATTT 59.299 36.000 15.67 0.00 0.00 2.32
2792 5912 6.871492 TCAGCTGAAAACTCGATGTACATTTA 59.129 34.615 15.67 0.36 0.00 1.40
2793 5913 7.063426 TCAGCTGAAAACTCGATGTACATTTAG 59.937 37.037 15.67 12.51 0.00 1.85
2794 5914 7.063426 CAGCTGAAAACTCGATGTACATTTAGA 59.937 37.037 19.62 14.15 0.00 2.10
2795 5915 7.276658 AGCTGAAAACTCGATGTACATTTAGAG 59.723 37.037 23.55 23.55 0.00 2.43
2796 5916 7.275779 GCTGAAAACTCGATGTACATTTAGAGA 59.724 37.037 28.16 15.84 0.00 3.10
2797 5917 9.307121 CTGAAAACTCGATGTACATTTAGAGAT 57.693 33.333 28.16 20.11 0.00 2.75
2798 5918 9.653287 TGAAAACTCGATGTACATTTAGAGATT 57.347 29.630 28.16 23.01 0.00 2.40
2800 5920 9.653287 AAAACTCGATGTACATTTAGAGATTCA 57.347 29.630 28.16 4.71 0.00 2.57
2801 5921 9.653287 AAACTCGATGTACATTTAGAGATTCAA 57.347 29.630 28.16 0.00 0.00 2.69
2802 5922 9.653287 AACTCGATGTACATTTAGAGATTCAAA 57.347 29.630 28.16 3.08 0.00 2.69
2803 5923 9.653287 ACTCGATGTACATTTAGAGATTCAAAA 57.347 29.630 28.16 3.20 0.00 2.44
2825 5945 6.900568 AAAAGACAAATTCAAATGCGAACA 57.099 29.167 0.00 0.00 0.00 3.18
2826 5946 6.515043 AAAGACAAATTCAAATGCGAACAG 57.485 33.333 0.00 0.00 0.00 3.16
2827 5947 5.186996 AGACAAATTCAAATGCGAACAGT 57.813 34.783 0.00 0.00 0.00 3.55
2828 5948 4.977963 AGACAAATTCAAATGCGAACAGTG 59.022 37.500 0.00 0.00 0.00 3.66
2829 5949 4.930963 ACAAATTCAAATGCGAACAGTGA 58.069 34.783 0.00 0.00 0.00 3.41
2830 5950 5.347342 ACAAATTCAAATGCGAACAGTGAA 58.653 33.333 0.00 0.00 37.85 3.18
2831 5951 5.809562 ACAAATTCAAATGCGAACAGTGAAA 59.190 32.000 0.00 0.00 37.33 2.69
2832 5952 6.019640 ACAAATTCAAATGCGAACAGTGAAAG 60.020 34.615 0.00 0.00 37.33 2.62
2833 5953 2.998772 TCAAATGCGAACAGTGAAAGC 58.001 42.857 0.00 0.00 0.00 3.51
2834 5954 1.710249 CAAATGCGAACAGTGAAAGCG 59.290 47.619 0.00 0.00 0.00 4.68
2835 5955 0.944386 AATGCGAACAGTGAAAGCGT 59.056 45.000 0.00 0.00 0.00 5.07
2836 5956 0.235665 ATGCGAACAGTGAAAGCGTG 59.764 50.000 0.00 0.00 0.00 5.34
2837 5957 1.082756 GCGAACAGTGAAAGCGTGG 60.083 57.895 0.00 0.00 0.00 4.94
2838 5958 1.569493 CGAACAGTGAAAGCGTGGG 59.431 57.895 0.00 0.00 0.00 4.61
2839 5959 1.157870 CGAACAGTGAAAGCGTGGGT 61.158 55.000 0.00 0.00 0.00 4.51
2840 5960 0.307760 GAACAGTGAAAGCGTGGGTG 59.692 55.000 0.00 0.00 0.00 4.61
2841 5961 0.107410 AACAGTGAAAGCGTGGGTGA 60.107 50.000 0.00 0.00 0.00 4.02
2842 5962 0.107410 ACAGTGAAAGCGTGGGTGAA 60.107 50.000 0.00 0.00 0.00 3.18
2843 5963 1.238439 CAGTGAAAGCGTGGGTGAAT 58.762 50.000 0.00 0.00 0.00 2.57
2844 5964 2.224426 ACAGTGAAAGCGTGGGTGAATA 60.224 45.455 0.00 0.00 0.00 1.75
2845 5965 2.416547 CAGTGAAAGCGTGGGTGAATAG 59.583 50.000 0.00 0.00 0.00 1.73
2846 5966 1.130561 GTGAAAGCGTGGGTGAATAGC 59.869 52.381 0.00 0.00 0.00 2.97
2847 5967 1.271108 TGAAAGCGTGGGTGAATAGCA 60.271 47.619 0.00 0.00 0.00 3.49
2848 5968 1.130561 GAAAGCGTGGGTGAATAGCAC 59.869 52.381 0.00 0.00 46.98 4.40
2849 5969 0.324943 AAGCGTGGGTGAATAGCACT 59.675 50.000 0.00 0.00 46.86 4.40
2850 5970 0.324943 AGCGTGGGTGAATAGCACTT 59.675 50.000 0.00 0.00 46.86 3.16
2851 5971 1.165270 GCGTGGGTGAATAGCACTTT 58.835 50.000 0.00 0.00 46.86 2.66
2852 5972 1.135689 GCGTGGGTGAATAGCACTTTG 60.136 52.381 0.00 0.00 46.86 2.77
2853 5973 2.422597 CGTGGGTGAATAGCACTTTGA 58.577 47.619 0.00 0.00 46.86 2.69
2854 5974 3.009723 CGTGGGTGAATAGCACTTTGAT 58.990 45.455 0.00 0.00 46.86 2.57
2855 5975 4.188462 CGTGGGTGAATAGCACTTTGATA 58.812 43.478 0.00 0.00 46.86 2.15
2856 5976 4.816385 CGTGGGTGAATAGCACTTTGATAT 59.184 41.667 0.00 0.00 46.86 1.63
2857 5977 5.296780 CGTGGGTGAATAGCACTTTGATATT 59.703 40.000 0.00 0.00 46.86 1.28
2858 5978 6.481976 CGTGGGTGAATAGCACTTTGATATTA 59.518 38.462 0.00 0.00 46.86 0.98
2859 5979 7.173218 CGTGGGTGAATAGCACTTTGATATTAT 59.827 37.037 0.00 0.00 46.86 1.28
2860 5980 8.850156 GTGGGTGAATAGCACTTTGATATTATT 58.150 33.333 0.00 0.00 46.86 1.40
2861 5981 9.066892 TGGGTGAATAGCACTTTGATATTATTC 57.933 33.333 0.00 0.00 46.86 1.75
2862 5982 9.066892 GGGTGAATAGCACTTTGATATTATTCA 57.933 33.333 0.00 1.75 46.86 2.57
2908 6028 9.120538 TCCATTAATGTAAGTTGAATTAGGAGC 57.879 33.333 14.25 0.00 0.00 4.70
2909 6029 9.125026 CCATTAATGTAAGTTGAATTAGGAGCT 57.875 33.333 14.25 0.00 0.00 4.09
2910 6030 9.941664 CATTAATGTAAGTTGAATTAGGAGCTG 57.058 33.333 7.32 0.00 0.00 4.24
2911 6031 9.905713 ATTAATGTAAGTTGAATTAGGAGCTGA 57.094 29.630 0.00 0.00 0.00 4.26
2912 6032 9.733556 TTAATGTAAGTTGAATTAGGAGCTGAA 57.266 29.630 0.00 0.00 0.00 3.02
2913 6033 8.635765 AATGTAAGTTGAATTAGGAGCTGAAA 57.364 30.769 0.00 0.00 0.00 2.69
2914 6034 7.435068 TGTAAGTTGAATTAGGAGCTGAAAC 57.565 36.000 0.00 0.00 0.00 2.78
2915 6035 7.224297 TGTAAGTTGAATTAGGAGCTGAAACT 58.776 34.615 0.00 0.00 0.00 2.66
2916 6036 7.719633 TGTAAGTTGAATTAGGAGCTGAAACTT 59.280 33.333 0.00 0.00 39.31 2.66
2917 6037 7.588497 AAGTTGAATTAGGAGCTGAAACTTT 57.412 32.000 0.00 0.00 33.97 2.66
2918 6038 7.588497 AGTTGAATTAGGAGCTGAAACTTTT 57.412 32.000 0.00 0.00 0.00 2.27
2919 6039 8.011844 AGTTGAATTAGGAGCTGAAACTTTTT 57.988 30.769 0.00 0.00 0.00 1.94
2941 6061 7.906611 TTTTGAGATTGTACATCAAACGTTG 57.093 32.000 18.27 0.00 41.33 4.10
2942 6062 6.852858 TTGAGATTGTACATCAAACGTTGA 57.147 33.333 0.00 1.91 45.01 3.18
2970 6090 9.736023 GTGTCTACACAATTTTTCAGAATCTTT 57.264 29.630 8.35 0.00 45.75 2.52
2971 6091 9.734620 TGTCTACACAATTTTTCAGAATCTTTG 57.265 29.630 0.00 0.00 0.00 2.77
2972 6092 9.950680 GTCTACACAATTTTTCAGAATCTTTGA 57.049 29.630 0.00 0.00 0.00 2.69
2974 6094 7.704789 ACACAATTTTTCAGAATCTTTGAGC 57.295 32.000 0.00 0.00 0.00 4.26
2975 6095 7.267128 ACACAATTTTTCAGAATCTTTGAGCA 58.733 30.769 0.00 0.00 0.00 4.26
2976 6096 7.929785 ACACAATTTTTCAGAATCTTTGAGCAT 59.070 29.630 0.00 0.00 0.00 3.79
2977 6097 8.221100 CACAATTTTTCAGAATCTTTGAGCATG 58.779 33.333 0.00 0.00 0.00 4.06
2978 6098 7.929785 ACAATTTTTCAGAATCTTTGAGCATGT 59.070 29.630 0.00 0.00 0.00 3.21
2979 6099 8.770828 CAATTTTTCAGAATCTTTGAGCATGTT 58.229 29.630 0.00 0.00 0.00 2.71
2980 6100 8.897872 ATTTTTCAGAATCTTTGAGCATGTTT 57.102 26.923 0.00 0.00 0.00 2.83
2981 6101 8.721019 TTTTTCAGAATCTTTGAGCATGTTTT 57.279 26.923 0.00 0.00 0.00 2.43
2982 6102 8.721019 TTTTCAGAATCTTTGAGCATGTTTTT 57.279 26.923 0.00 0.00 0.00 1.94
2983 6103 7.935338 TTCAGAATCTTTGAGCATGTTTTTC 57.065 32.000 0.00 0.00 0.00 2.29
2984 6104 7.281040 TCAGAATCTTTGAGCATGTTTTTCT 57.719 32.000 0.00 0.00 0.00 2.52
2985 6105 7.719483 TCAGAATCTTTGAGCATGTTTTTCTT 58.281 30.769 0.00 0.00 0.00 2.52
2986 6106 8.199449 TCAGAATCTTTGAGCATGTTTTTCTTT 58.801 29.630 0.00 0.00 0.00 2.52
2987 6107 8.823818 CAGAATCTTTGAGCATGTTTTTCTTTT 58.176 29.630 0.00 0.00 0.00 2.27
2988 6108 9.038803 AGAATCTTTGAGCATGTTTTTCTTTTC 57.961 29.630 0.00 0.00 0.00 2.29
2989 6109 8.721019 AATCTTTGAGCATGTTTTTCTTTTCA 57.279 26.923 0.00 0.00 0.00 2.69
2990 6110 8.721019 ATCTTTGAGCATGTTTTTCTTTTCAA 57.279 26.923 0.00 0.00 0.00 2.69
2991 6111 8.545229 TCTTTGAGCATGTTTTTCTTTTCAAA 57.455 26.923 0.00 0.00 33.70 2.69
2992 6112 8.997323 TCTTTGAGCATGTTTTTCTTTTCAAAA 58.003 25.926 0.00 0.00 34.20 2.44
2993 6113 9.609950 CTTTGAGCATGTTTTTCTTTTCAAAAA 57.390 25.926 0.00 0.00 34.20 1.94
3016 6136 8.586570 AAAAATCGATCTCATAGATCTCACAC 57.413 34.615 13.49 0.00 46.83 3.82
3017 6137 6.890979 AATCGATCTCATAGATCTCACACA 57.109 37.500 13.49 0.00 46.83 3.72
3018 6138 6.890979 ATCGATCTCATAGATCTCACACAA 57.109 37.500 13.49 0.00 46.83 3.33
3019 6139 6.311055 TCGATCTCATAGATCTCACACAAG 57.689 41.667 13.49 0.00 46.83 3.16
3020 6140 5.825151 TCGATCTCATAGATCTCACACAAGT 59.175 40.000 13.49 0.00 46.83 3.16
3021 6141 6.017523 TCGATCTCATAGATCTCACACAAGTC 60.018 42.308 13.49 0.00 46.83 3.01
3022 6142 6.017192 CGATCTCATAGATCTCACACAAGTCT 60.017 42.308 13.49 0.00 46.83 3.24
3023 6143 6.691754 TCTCATAGATCTCACACAAGTCTC 57.308 41.667 0.00 0.00 0.00 3.36
3024 6144 5.592282 TCTCATAGATCTCACACAAGTCTCC 59.408 44.000 0.00 0.00 0.00 3.71
3025 6145 4.646945 TCATAGATCTCACACAAGTCTCCC 59.353 45.833 0.00 0.00 0.00 4.30
3026 6146 2.183679 AGATCTCACACAAGTCTCCCC 58.816 52.381 0.00 0.00 0.00 4.81
3027 6147 1.208293 GATCTCACACAAGTCTCCCCC 59.792 57.143 0.00 0.00 0.00 5.40
3028 6148 0.191064 TCTCACACAAGTCTCCCCCT 59.809 55.000 0.00 0.00 0.00 4.79
3029 6149 1.059913 CTCACACAAGTCTCCCCCTT 58.940 55.000 0.00 0.00 0.00 3.95
3030 6150 1.002544 CTCACACAAGTCTCCCCCTTC 59.997 57.143 0.00 0.00 0.00 3.46
3031 6151 0.320771 CACACAAGTCTCCCCCTTCG 60.321 60.000 0.00 0.00 0.00 3.79
3032 6152 1.296715 CACAAGTCTCCCCCTTCGG 59.703 63.158 0.00 0.00 0.00 4.30
3033 6153 1.152096 ACAAGTCTCCCCCTTCGGT 60.152 57.895 0.00 0.00 0.00 4.69
3034 6154 1.192803 ACAAGTCTCCCCCTTCGGTC 61.193 60.000 0.00 0.00 0.00 4.79
3035 6155 1.982938 AAGTCTCCCCCTTCGGTCG 60.983 63.158 0.00 0.00 0.00 4.79
3036 6156 4.144703 GTCTCCCCCTTCGGTCGC 62.145 72.222 0.00 0.00 0.00 5.19
3037 6157 4.689549 TCTCCCCCTTCGGTCGCA 62.690 66.667 0.00 0.00 0.00 5.10
3038 6158 3.702048 CTCCCCCTTCGGTCGCAA 61.702 66.667 0.00 0.00 0.00 4.85
3039 6159 3.952628 CTCCCCCTTCGGTCGCAAC 62.953 68.421 0.00 0.00 0.00 4.17
3041 6161 4.016706 CCCCTTCGGTCGCAACCT 62.017 66.667 0.00 0.00 44.04 3.50
3042 6162 2.434359 CCCTTCGGTCGCAACCTC 60.434 66.667 0.00 0.00 44.04 3.85
3043 6163 2.809601 CCTTCGGTCGCAACCTCG 60.810 66.667 0.00 0.00 44.04 4.63
3044 6164 3.479269 CTTCGGTCGCAACCTCGC 61.479 66.667 0.00 0.00 44.04 5.03
3059 6179 4.093952 CGCAAGTCAGGCAAGGCG 62.094 66.667 0.00 0.00 38.45 5.52
3083 6203 3.050703 CGCAAGGTGGCTACAGTAG 57.949 57.895 1.52 2.85 0.00 2.57
3096 6216 2.311124 ACAGTAGTAGCCATTTCCGC 57.689 50.000 0.00 0.00 0.00 5.54
3097 6217 1.553248 ACAGTAGTAGCCATTTCCGCA 59.447 47.619 0.00 0.00 0.00 5.69
3098 6218 2.170607 ACAGTAGTAGCCATTTCCGCAT 59.829 45.455 0.00 0.00 0.00 4.73
3101 7043 3.877508 AGTAGTAGCCATTTCCGCATTTC 59.122 43.478 0.00 0.00 0.00 2.17
3115 7057 0.463654 CATTTCGGGGGCGATGAAGA 60.464 55.000 0.00 0.00 0.00 2.87
3127 7069 5.039333 GGGCGATGAAGAATTGAATTCAAG 58.961 41.667 24.17 9.85 41.71 3.02
3129 7071 4.501921 GCGATGAAGAATTGAATTCAAGGC 59.498 41.667 24.17 17.93 41.71 4.35
3130 7072 5.643664 CGATGAAGAATTGAATTCAAGGCA 58.356 37.500 24.17 16.74 41.71 4.75
3131 7073 5.514204 CGATGAAGAATTGAATTCAAGGCAC 59.486 40.000 24.17 14.98 41.71 5.01
3132 7074 6.600882 ATGAAGAATTGAATTCAAGGCACT 57.399 33.333 24.17 16.62 41.71 4.40
3188 7174 0.755686 AGCAATCCCTCTCGTGATCC 59.244 55.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.357918 AATAGCAGTGTCAAAGTGGAGT 57.642 40.909 0.00 0.00 0.00 3.85
122 123 0.734309 TGCACACACAGCTGTTCTTG 59.266 50.000 18.94 16.67 0.00 3.02
140 141 2.101575 GATGCGTGCATGGCAGTG 59.898 61.111 12.81 0.00 44.71 3.66
158 159 0.318955 AGTTTGACTTTGGCATGCGC 60.319 50.000 12.44 0.00 37.44 6.09
199 3204 3.791586 GCCTGGCTGGAGGAGGAC 61.792 72.222 15.36 0.00 38.35 3.85
205 3210 4.803426 GACGACGCCTGGCTGGAG 62.803 72.222 17.92 13.80 41.69 3.86
284 3289 0.033894 GTCCGTCTTCTCCTCCTCCT 60.034 60.000 0.00 0.00 0.00 3.69
341 3347 0.918619 ATAAACGAACGCGATGGTCG 59.081 50.000 15.93 18.00 43.89 4.79
358 3370 1.899814 AGAACCAGTCCGTTGCTCATA 59.100 47.619 0.00 0.00 0.00 2.15
359 3371 0.687354 AGAACCAGTCCGTTGCTCAT 59.313 50.000 0.00 0.00 0.00 2.90
360 3372 1.334160 TAGAACCAGTCCGTTGCTCA 58.666 50.000 0.00 0.00 0.00 4.26
361 3373 2.067013 GTTAGAACCAGTCCGTTGCTC 58.933 52.381 0.00 0.00 0.00 4.26
362 3374 2.165319 GTTAGAACCAGTCCGTTGCT 57.835 50.000 0.00 0.00 0.00 3.91
389 3401 3.736100 CGGCAATGACGGCAGCAA 61.736 61.111 0.00 0.00 0.00 3.91
406 3418 1.273327 AGGCTGTTTGTTAGCAATGGC 59.727 47.619 0.00 0.05 42.88 4.40
407 3419 2.094545 GGAGGCTGTTTGTTAGCAATGG 60.095 50.000 0.00 0.00 42.88 3.16
409 3421 2.875296 TGGAGGCTGTTTGTTAGCAAT 58.125 42.857 0.00 0.00 42.88 3.56
410 3422 2.356665 TGGAGGCTGTTTGTTAGCAA 57.643 45.000 0.00 0.00 42.88 3.91
411 3423 2.356665 TTGGAGGCTGTTTGTTAGCA 57.643 45.000 0.00 0.00 42.88 3.49
412 3424 2.608016 GCTTTGGAGGCTGTTTGTTAGC 60.608 50.000 0.00 0.00 40.41 3.09
413 3425 2.887152 AGCTTTGGAGGCTGTTTGTTAG 59.113 45.455 0.00 0.00 38.73 2.34
414 3426 2.944129 AGCTTTGGAGGCTGTTTGTTA 58.056 42.857 0.00 0.00 38.73 2.41
475 3489 4.722700 GACCCCGTGCATGGTGCT 62.723 66.667 23.39 5.11 45.31 4.40
480 3494 2.951642 AGAAATAATGACCCCGTGCATG 59.048 45.455 0.00 0.00 0.00 4.06
485 3499 2.092592 GTGGGAGAAATAATGACCCCGT 60.093 50.000 0.00 0.00 39.78 5.28
491 3505 5.414789 TGAGTTCGTGGGAGAAATAATGA 57.585 39.130 0.00 0.00 0.00 2.57
496 3510 4.508662 GAGATTGAGTTCGTGGGAGAAAT 58.491 43.478 0.00 0.00 0.00 2.17
506 3520 4.409570 CTGCAAAATGGAGATTGAGTTCG 58.590 43.478 0.00 0.00 38.14 3.95
554 3570 1.000283 CACTCAGAAAGCTCTCCGTGT 60.000 52.381 0.00 0.00 29.97 4.49
570 3616 1.467734 CATCAAGCTCTGCAACCACTC 59.532 52.381 0.00 0.00 0.00 3.51
579 3625 2.704464 TCACATCCCATCAAGCTCTG 57.296 50.000 0.00 0.00 0.00 3.35
674 3720 8.535690 TTTCACGTGAAATTTGGTTAGTTTTT 57.464 26.923 33.86 0.00 38.94 1.94
726 3774 0.741927 GGTGCATTTCAAGGGCATGC 60.742 55.000 9.90 9.90 43.13 4.06
775 3823 1.521457 TGCCATCGAATGAGCGGAC 60.521 57.895 0.00 0.00 31.73 4.79
858 3906 3.461773 CAGTGGCGGATCGGAGGT 61.462 66.667 4.16 0.00 0.00 3.85
920 3979 4.823419 TAATGCGGTGGCGGACGG 62.823 66.667 0.00 0.00 44.10 4.79
939 3998 4.388499 GGAAGCGGTGGGAGCGAA 62.388 66.667 0.00 0.00 42.41 4.70
942 4001 4.344865 TTGGGAAGCGGTGGGAGC 62.345 66.667 0.00 0.00 0.00 4.70
943 4002 2.359975 GTTGGGAAGCGGTGGGAG 60.360 66.667 0.00 0.00 0.00 4.30
944 4003 2.285889 TTTGTTGGGAAGCGGTGGGA 62.286 55.000 0.00 0.00 0.00 4.37
1430 4496 3.181478 CGGAAGGGCTCGAGTTAGTTTAT 60.181 47.826 15.13 0.00 0.00 1.40
1431 4497 2.165030 CGGAAGGGCTCGAGTTAGTTTA 59.835 50.000 15.13 0.00 0.00 2.01
1432 4498 1.067071 CGGAAGGGCTCGAGTTAGTTT 60.067 52.381 15.13 2.09 0.00 2.66
1483 4550 4.927978 AATCCACCTCAATAGAGACTCG 57.072 45.455 0.00 0.00 44.98 4.18
1492 4563 4.703575 CACACAGATCAAATCCACCTCAAT 59.296 41.667 0.00 0.00 0.00 2.57
1509 4580 4.151335 GCTGCGAGAATAATATCCACACAG 59.849 45.833 0.00 0.00 0.00 3.66
1527 4598 1.677576 ACATTGTATCCCATTGCTGCG 59.322 47.619 0.00 0.00 0.00 5.18
1607 4678 3.706373 CAGGGTACTGCGGGCTGT 61.706 66.667 8.26 8.26 38.01 4.40
1648 4719 7.241042 AGCCACAACTGAAATTCTACTAGTA 57.759 36.000 1.89 1.89 0.00 1.82
1649 4720 6.115448 AGCCACAACTGAAATTCTACTAGT 57.885 37.500 0.00 0.00 0.00 2.57
1650 4721 6.650807 TGAAGCCACAACTGAAATTCTACTAG 59.349 38.462 0.00 0.00 0.00 2.57
1668 4739 8.522830 CCAGAAAGAATTATTAAACTGAAGCCA 58.477 33.333 12.73 0.00 0.00 4.75
1671 4742 9.565213 CAGCCAGAAAGAATTATTAAACTGAAG 57.435 33.333 12.73 3.28 0.00 3.02
1745 4816 8.064336 ACAAGTAATTCCGAACATCTAGTACT 57.936 34.615 0.00 0.00 0.00 2.73
1753 4824 5.068234 TCGAGACAAGTAATTCCGAACAT 57.932 39.130 0.00 0.00 0.00 2.71
1755 4826 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
1756 4827 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
1757 4828 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
1758 4829 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
1759 4830 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
1760 4831 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
1761 4832 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
1762 4833 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
1763 4834 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
1764 4835 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
1765 4836 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
1766 4837 8.648557 TTAGATACATCCATTTTCGAGACAAG 57.351 34.615 0.00 0.00 0.00 3.16
1767 4838 9.443323 TTTTAGATACATCCATTTTCGAGACAA 57.557 29.630 0.00 0.00 0.00 3.18
1768 4839 8.879759 GTTTTAGATACATCCATTTTCGAGACA 58.120 33.333 0.00 0.00 0.00 3.41
1769 4840 9.099454 AGTTTTAGATACATCCATTTTCGAGAC 57.901 33.333 0.00 0.00 0.00 3.36
1798 4869 9.730420 GCAAAAATGGATGTATCTAAACGTATT 57.270 29.630 0.00 0.00 0.00 1.89
1799 4870 8.067784 CGCAAAAATGGATGTATCTAAACGTAT 58.932 33.333 0.00 0.00 0.00 3.06
1800 4871 7.278203 TCGCAAAAATGGATGTATCTAAACGTA 59.722 33.333 0.00 0.00 0.00 3.57
1801 4872 6.092944 TCGCAAAAATGGATGTATCTAAACGT 59.907 34.615 0.00 0.00 0.00 3.99
1802 4873 6.410914 GTCGCAAAAATGGATGTATCTAAACG 59.589 38.462 0.00 0.00 0.00 3.60
1803 4874 7.247728 TGTCGCAAAAATGGATGTATCTAAAC 58.752 34.615 0.00 0.00 0.00 2.01
1804 4875 7.384439 TGTCGCAAAAATGGATGTATCTAAA 57.616 32.000 0.00 0.00 0.00 1.85
1805 4876 6.993786 TGTCGCAAAAATGGATGTATCTAA 57.006 33.333 0.00 0.00 0.00 2.10
1806 4877 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
1807 4878 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
1808 4879 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
1809 4880 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
1810 4881 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
1811 4882 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
1812 4883 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
1813 4884 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
1814 4885 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
1815 4886 4.323336 CGGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
1816 4887 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
1817 4888 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
1818 4889 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
1819 4890 4.035324 TGTTCGGAATTACTTGTCGCAAAA 59.965 37.500 0.00 0.00 0.00 2.44
1820 4891 3.560481 TGTTCGGAATTACTTGTCGCAAA 59.440 39.130 0.00 0.00 0.00 3.68
1821 4892 3.132160 TGTTCGGAATTACTTGTCGCAA 58.868 40.909 0.00 0.00 0.00 4.85
1822 4893 2.734606 CTGTTCGGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
1823 4894 2.991190 TCTGTTCGGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
1824 4895 3.612860 CCTCTGTTCGGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
1825 4896 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1826 4897 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1827 4898 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1828 4899 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1829 4900 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1830 4901 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1831 4902 6.837568 ACTAATACTCCCTCTGTTCGGAATTA 59.162 38.462 0.00 0.00 0.00 1.40
1832 4903 5.661759 ACTAATACTCCCTCTGTTCGGAATT 59.338 40.000 0.00 0.00 0.00 2.17
1833 4904 5.209659 ACTAATACTCCCTCTGTTCGGAAT 58.790 41.667 0.00 0.00 0.00 3.01
1834 4905 4.607239 ACTAATACTCCCTCTGTTCGGAA 58.393 43.478 0.00 0.00 0.00 4.30
1835 4906 4.246712 ACTAATACTCCCTCTGTTCGGA 57.753 45.455 0.00 0.00 0.00 4.55
1836 4907 6.461110 TTAACTAATACTCCCTCTGTTCGG 57.539 41.667 0.00 0.00 0.00 4.30
1882 4953 8.833493 CCTTACTTCGGTTTTTCTCTTCTTTTA 58.167 33.333 0.00 0.00 0.00 1.52
1891 4962 4.081322 TCAGCCTTACTTCGGTTTTTCT 57.919 40.909 0.00 0.00 0.00 2.52
1899 4970 3.002791 TGAATGCTTCAGCCTTACTTCG 58.997 45.455 0.00 0.00 41.18 3.79
1911 4982 1.135199 CATGTGGCCACTGAATGCTTC 60.135 52.381 34.75 6.57 0.00 3.86
1914 4985 1.462616 TACATGTGGCCACTGAATGC 58.537 50.000 34.75 8.97 0.00 3.56
1928 5006 2.130395 CTGCACCTACGAGCATACATG 58.870 52.381 0.00 0.00 40.42 3.21
1945 5023 5.715070 ACTGAAACTGTGTCTATACTCTGC 58.285 41.667 0.00 0.00 0.00 4.26
1953 5031 4.109766 CACGTGAACTGAAACTGTGTCTA 58.890 43.478 10.90 0.00 0.00 2.59
2005 5107 5.378332 CCTACTATACCACTGCAGTACTCT 58.622 45.833 21.20 7.69 0.00 3.24
2014 5116 4.337555 AGTTGTACGCCTACTATACCACTG 59.662 45.833 0.00 0.00 0.00 3.66
2044 5148 2.828520 ACGGAGATGGCATATACAGGAG 59.171 50.000 5.02 0.00 0.00 3.69
2045 5149 2.826128 GACGGAGATGGCATATACAGGA 59.174 50.000 5.02 0.00 0.00 3.86
2047 5151 2.868662 CGACGGAGATGGCATATACAG 58.131 52.381 5.02 0.19 0.00 2.74
2048 5152 1.067846 GCGACGGAGATGGCATATACA 60.068 52.381 5.02 0.00 0.00 2.29
2049 5153 1.067846 TGCGACGGAGATGGCATATAC 60.068 52.381 0.00 0.00 0.00 1.47
2183 5287 1.719780 GTGTCCGCTTAGAAGAACACG 59.280 52.381 0.00 0.00 0.00 4.49
2185 5289 1.336517 CCGTGTCCGCTTAGAAGAACA 60.337 52.381 0.00 0.00 0.00 3.18
2236 5344 1.078709 CCAATCATTCACGCGACAGT 58.921 50.000 15.93 0.00 0.00 3.55
2251 5359 1.816835 CACACTGAGAAGCATGCCAAT 59.183 47.619 15.66 0.00 0.00 3.16
2252 5360 1.241165 CACACTGAGAAGCATGCCAA 58.759 50.000 15.66 0.00 0.00 4.52
2253 5361 0.109153 ACACACTGAGAAGCATGCCA 59.891 50.000 15.66 3.92 0.00 4.92
2254 5362 0.520404 CACACACTGAGAAGCATGCC 59.480 55.000 15.66 0.00 0.00 4.40
2256 5364 1.520494 AGCACACACTGAGAAGCATG 58.480 50.000 0.00 0.00 0.00 4.06
2258 5366 1.688735 ACTAGCACACACTGAGAAGCA 59.311 47.619 0.00 0.00 0.00 3.91
2259 5367 2.447244 ACTAGCACACACTGAGAAGC 57.553 50.000 0.00 0.00 0.00 3.86
2260 5368 4.380023 GGAGTACTAGCACACACTGAGAAG 60.380 50.000 0.00 0.00 0.00 2.85
2261 5369 3.506455 GGAGTACTAGCACACACTGAGAA 59.494 47.826 0.00 0.00 0.00 2.87
2262 5370 3.082548 GGAGTACTAGCACACACTGAGA 58.917 50.000 0.00 0.00 0.00 3.27
2263 5371 2.820197 TGGAGTACTAGCACACACTGAG 59.180 50.000 0.00 0.00 0.00 3.35
2265 5373 2.558795 ACTGGAGTACTAGCACACACTG 59.441 50.000 0.00 0.00 0.00 3.66
2266 5374 2.877866 ACTGGAGTACTAGCACACACT 58.122 47.619 0.00 0.00 0.00 3.55
2267 5375 4.398358 TCATACTGGAGTACTAGCACACAC 59.602 45.833 0.00 0.00 32.72 3.82
2272 5392 7.007116 AGAATCATCATACTGGAGTACTAGCA 58.993 38.462 0.00 0.00 32.72 3.49
2311 5431 5.587443 GCCGGAAATAACTGGTACTGTATTT 59.413 40.000 5.05 0.00 40.38 1.40
2333 5453 3.796504 GCATAGCACATAACATGTTGGCC 60.797 47.826 21.42 0.00 42.70 5.36
2339 5459 9.124807 CAATTGATTAGCATAGCACATAACATG 57.875 33.333 0.00 0.00 0.00 3.21
2369 5489 1.840741 CGAGTTTATGAGTGAGCGACG 59.159 52.381 0.00 0.00 0.00 5.12
2380 5500 3.571571 TCAGGTCACGAACGAGTTTATG 58.428 45.455 0.14 0.00 0.00 1.90
2398 5518 1.813178 TCGAGAGTTGCTACACCTCAG 59.187 52.381 16.19 11.00 0.00 3.35
2402 5522 4.106029 TGTTATCGAGAGTTGCTACACC 57.894 45.455 0.13 0.00 0.00 4.16
2417 5537 1.127766 TGCGCACACGACAATGTTATC 59.872 47.619 5.66 0.00 43.93 1.75
2447 5567 0.037326 TCACGAGGAAGGTGTGATGC 60.037 55.000 0.00 0.00 37.69 3.91
2448 5568 1.273606 ACTCACGAGGAAGGTGTGATG 59.726 52.381 0.00 0.00 41.39 3.07
2451 5571 0.387367 CGACTCACGAGGAAGGTGTG 60.387 60.000 0.00 0.00 45.77 3.82
2452 5572 0.822532 ACGACTCACGAGGAAGGTGT 60.823 55.000 0.00 0.00 45.77 4.16
2453 5573 0.387367 CACGACTCACGAGGAAGGTG 60.387 60.000 0.00 0.00 45.77 4.00
2454 5574 0.536687 TCACGACTCACGAGGAAGGT 60.537 55.000 0.00 0.00 45.77 3.50
2455 5575 0.109689 GTCACGACTCACGAGGAAGG 60.110 60.000 0.00 0.00 45.77 3.46
2479 5599 4.572571 TTTGTTCGGGCCACGGCT 62.573 61.111 4.39 0.00 44.45 5.52
2480 5600 4.337060 GTTTGTTCGGGCCACGGC 62.337 66.667 4.39 0.00 44.45 5.68
2481 5601 2.195123 GATGTTTGTTCGGGCCACGG 62.195 60.000 4.39 0.00 44.45 4.94
2482 5602 1.209127 GATGTTTGTTCGGGCCACG 59.791 57.895 4.39 6.13 46.11 4.94
2483 5603 1.584495 GGATGTTTGTTCGGGCCAC 59.416 57.895 4.39 0.00 0.00 5.01
2484 5604 1.969064 CGGATGTTTGTTCGGGCCA 60.969 57.895 4.39 0.00 0.00 5.36
2485 5605 1.918868 GACGGATGTTTGTTCGGGCC 61.919 60.000 0.00 0.00 0.00 5.80
2569 5689 7.752239 GTGTTAGTAGAGTACAGCACGAAATTA 59.248 37.037 0.00 0.00 0.00 1.40
2576 5696 3.190118 ACCGTGTTAGTAGAGTACAGCAC 59.810 47.826 0.00 0.00 0.00 4.40
2577 5697 3.415212 ACCGTGTTAGTAGAGTACAGCA 58.585 45.455 0.00 0.00 0.00 4.41
2578 5698 4.393062 TGTACCGTGTTAGTAGAGTACAGC 59.607 45.833 0.00 0.00 36.18 4.40
2579 5699 6.674694 ATGTACCGTGTTAGTAGAGTACAG 57.325 41.667 6.90 0.00 42.17 2.74
2580 5700 7.201522 CGTAATGTACCGTGTTAGTAGAGTACA 60.202 40.741 3.56 3.56 42.82 2.90
2581 5701 7.119997 CGTAATGTACCGTGTTAGTAGAGTAC 58.880 42.308 0.00 0.00 33.63 2.73
2582 5702 6.816640 ACGTAATGTACCGTGTTAGTAGAGTA 59.183 38.462 0.00 0.00 35.69 2.59
2583 5703 5.643777 ACGTAATGTACCGTGTTAGTAGAGT 59.356 40.000 0.00 0.00 35.69 3.24
2584 5704 6.111768 ACGTAATGTACCGTGTTAGTAGAG 57.888 41.667 0.00 0.00 35.69 2.43
2585 5705 7.494298 TCATACGTAATGTACCGTGTTAGTAGA 59.506 37.037 0.00 0.00 37.91 2.59
2596 5716 5.286438 TCATGCACTCATACGTAATGTACC 58.714 41.667 0.00 0.00 35.44 3.34
2597 5717 6.822073 TTCATGCACTCATACGTAATGTAC 57.178 37.500 0.00 0.00 35.44 2.90
2600 5720 6.291067 ACATTCATGCACTCATACGTAATG 57.709 37.500 0.00 0.00 36.88 1.90
2601 5721 8.021955 CATACATTCATGCACTCATACGTAAT 57.978 34.615 0.00 0.00 0.00 1.89
2602 5722 7.406799 CATACATTCATGCACTCATACGTAA 57.593 36.000 0.00 0.00 0.00 3.18
2604 5724 5.912360 CATACATTCATGCACTCATACGT 57.088 39.130 0.00 0.00 0.00 3.57
2618 5738 7.639072 GCGATATGAATGATTGAGCATACATTC 59.361 37.037 16.08 16.08 44.71 2.67
2619 5739 7.470079 GCGATATGAATGATTGAGCATACATT 58.530 34.615 0.00 0.00 35.99 2.71
2622 5742 5.487581 CGCGATATGAATGATTGAGCATAC 58.512 41.667 0.00 0.00 0.00 2.39
2624 5744 3.373130 CCGCGATATGAATGATTGAGCAT 59.627 43.478 8.23 0.00 0.00 3.79
2625 5745 2.738314 CCGCGATATGAATGATTGAGCA 59.262 45.455 8.23 0.00 0.00 4.26
2626 5746 2.094894 CCCGCGATATGAATGATTGAGC 59.905 50.000 8.23 0.00 0.00 4.26
2627 5747 2.674852 CCCCGCGATATGAATGATTGAG 59.325 50.000 8.23 0.00 0.00 3.02
2628 5748 2.301583 TCCCCGCGATATGAATGATTGA 59.698 45.455 8.23 0.00 0.00 2.57
2629 5749 2.416547 GTCCCCGCGATATGAATGATTG 59.583 50.000 8.23 0.00 0.00 2.67
2630 5750 2.038426 TGTCCCCGCGATATGAATGATT 59.962 45.455 8.23 0.00 0.00 2.57
2631 5751 1.623311 TGTCCCCGCGATATGAATGAT 59.377 47.619 8.23 0.00 0.00 2.45
2632 5752 1.044611 TGTCCCCGCGATATGAATGA 58.955 50.000 8.23 0.00 0.00 2.57
2633 5753 2.099141 ATGTCCCCGCGATATGAATG 57.901 50.000 8.23 0.00 0.00 2.67
2634 5754 2.859165 AATGTCCCCGCGATATGAAT 57.141 45.000 8.23 0.00 0.00 2.57
2635 5755 2.631160 AAATGTCCCCGCGATATGAA 57.369 45.000 8.23 0.00 0.00 2.57
2636 5756 2.894765 TCTAAATGTCCCCGCGATATGA 59.105 45.455 8.23 0.00 0.00 2.15
2637 5757 3.313012 TCTAAATGTCCCCGCGATATG 57.687 47.619 8.23 0.00 0.00 1.78
2638 5758 3.513912 TCATCTAAATGTCCCCGCGATAT 59.486 43.478 8.23 0.00 34.32 1.63
2639 5759 2.894765 TCATCTAAATGTCCCCGCGATA 59.105 45.455 8.23 0.00 34.32 2.92
2640 5760 1.691976 TCATCTAAATGTCCCCGCGAT 59.308 47.619 8.23 0.00 34.32 4.58
2641 5761 1.068588 CTCATCTAAATGTCCCCGCGA 59.931 52.381 8.23 0.00 34.32 5.87
2642 5762 1.068588 TCTCATCTAAATGTCCCCGCG 59.931 52.381 0.00 0.00 34.32 6.46
2643 5763 2.910688 TCTCATCTAAATGTCCCCGC 57.089 50.000 0.00 0.00 34.32 6.13
2644 5764 4.708177 ACAATCTCATCTAAATGTCCCCG 58.292 43.478 0.00 0.00 34.32 5.73
2645 5765 5.684704 TGACAATCTCATCTAAATGTCCCC 58.315 41.667 0.00 0.00 37.07 4.81
2646 5766 6.586344 TCTGACAATCTCATCTAAATGTCCC 58.414 40.000 0.00 0.00 37.07 4.46
2647 5767 7.930325 TGATCTGACAATCTCATCTAAATGTCC 59.070 37.037 0.00 0.00 37.07 4.02
2648 5768 8.883954 TGATCTGACAATCTCATCTAAATGTC 57.116 34.615 0.00 0.00 38.08 3.06
2649 5769 9.107177 GTTGATCTGACAATCTCATCTAAATGT 57.893 33.333 0.00 0.00 32.13 2.71
2650 5770 8.557864 GGTTGATCTGACAATCTCATCTAAATG 58.442 37.037 0.00 0.00 32.36 2.32
2651 5771 7.718753 GGGTTGATCTGACAATCTCATCTAAAT 59.281 37.037 0.00 0.00 32.25 1.40
2652 5772 7.050377 GGGTTGATCTGACAATCTCATCTAAA 58.950 38.462 0.00 0.00 32.25 1.85
2653 5773 6.385176 AGGGTTGATCTGACAATCTCATCTAA 59.615 38.462 0.00 0.00 32.25 2.10
2654 5774 5.901853 AGGGTTGATCTGACAATCTCATCTA 59.098 40.000 0.00 0.00 32.25 1.98
2655 5775 4.720773 AGGGTTGATCTGACAATCTCATCT 59.279 41.667 0.00 0.00 32.25 2.90
2656 5776 5.033589 AGGGTTGATCTGACAATCTCATC 57.966 43.478 0.00 0.00 32.25 2.92
2657 5777 6.566079 TTAGGGTTGATCTGACAATCTCAT 57.434 37.500 0.00 0.00 32.25 2.90
2658 5778 6.373005 TTTAGGGTTGATCTGACAATCTCA 57.627 37.500 0.00 0.00 32.25 3.27
2659 5779 7.687941 TTTTTAGGGTTGATCTGACAATCTC 57.312 36.000 0.00 0.00 32.25 2.75
2710 5830 9.685276 ACATGGATGTACTCAAATAATTTCAGA 57.315 29.630 0.00 0.00 39.68 3.27
2711 5831 9.726232 CACATGGATGTACTCAAATAATTTCAG 57.274 33.333 0.00 0.00 39.39 3.02
2712 5832 8.685427 CCACATGGATGTACTCAAATAATTTCA 58.315 33.333 0.00 0.00 39.39 2.69
2713 5833 8.137437 CCCACATGGATGTACTCAAATAATTTC 58.863 37.037 0.00 0.00 39.39 2.17
2714 5834 7.069826 CCCCACATGGATGTACTCAAATAATTT 59.930 37.037 0.00 0.00 39.39 1.82
2715 5835 6.550854 CCCCACATGGATGTACTCAAATAATT 59.449 38.462 0.00 0.00 39.39 1.40
2716 5836 6.070656 CCCCACATGGATGTACTCAAATAAT 58.929 40.000 0.00 0.00 39.39 1.28
2717 5837 5.044476 ACCCCACATGGATGTACTCAAATAA 60.044 40.000 0.00 0.00 39.39 1.40
2718 5838 4.476846 ACCCCACATGGATGTACTCAAATA 59.523 41.667 0.00 0.00 39.39 1.40
2719 5839 3.269381 ACCCCACATGGATGTACTCAAAT 59.731 43.478 0.00 0.00 39.39 2.32
2720 5840 2.647299 ACCCCACATGGATGTACTCAAA 59.353 45.455 0.00 0.00 39.39 2.69
2721 5841 2.274542 ACCCCACATGGATGTACTCAA 58.725 47.619 0.00 0.00 39.39 3.02
2722 5842 1.965414 ACCCCACATGGATGTACTCA 58.035 50.000 0.00 0.00 39.39 3.41
2723 5843 3.391296 ACATACCCCACATGGATGTACTC 59.609 47.826 0.00 0.00 39.39 2.59
2724 5844 3.391296 GACATACCCCACATGGATGTACT 59.609 47.826 0.00 0.00 39.39 2.73
2725 5845 3.391296 AGACATACCCCACATGGATGTAC 59.609 47.826 0.00 0.00 39.39 2.90
2726 5846 3.390967 CAGACATACCCCACATGGATGTA 59.609 47.826 0.00 1.32 39.39 2.29
2727 5847 2.173356 CAGACATACCCCACATGGATGT 59.827 50.000 0.00 1.37 42.84 3.06
2728 5848 2.854963 CAGACATACCCCACATGGATG 58.145 52.381 0.00 0.00 37.39 3.51
2729 5849 1.143684 GCAGACATACCCCACATGGAT 59.856 52.381 0.00 0.00 37.39 3.41
2730 5850 0.546122 GCAGACATACCCCACATGGA 59.454 55.000 0.00 0.00 37.39 3.41
2731 5851 0.255604 TGCAGACATACCCCACATGG 59.744 55.000 0.00 0.00 0.00 3.66
2732 5852 1.745087 GTTGCAGACATACCCCACATG 59.255 52.381 0.00 0.00 0.00 3.21
2733 5853 1.635487 AGTTGCAGACATACCCCACAT 59.365 47.619 0.00 0.00 0.00 3.21
2734 5854 1.003118 GAGTTGCAGACATACCCCACA 59.997 52.381 0.00 0.00 0.00 4.17
2735 5855 1.679032 GGAGTTGCAGACATACCCCAC 60.679 57.143 0.00 0.00 0.00 4.61
2736 5856 0.618458 GGAGTTGCAGACATACCCCA 59.382 55.000 0.00 0.00 0.00 4.96
2737 5857 0.462047 CGGAGTTGCAGACATACCCC 60.462 60.000 0.00 0.00 0.00 4.95
2738 5858 0.462047 CCGGAGTTGCAGACATACCC 60.462 60.000 0.00 0.00 0.00 3.69
2739 5859 0.535335 TCCGGAGTTGCAGACATACC 59.465 55.000 0.00 0.00 0.00 2.73
2740 5860 2.380084 TTCCGGAGTTGCAGACATAC 57.620 50.000 3.34 0.00 0.00 2.39
2741 5861 3.410631 TTTTCCGGAGTTGCAGACATA 57.589 42.857 3.34 0.00 0.00 2.29
2742 5862 2.270352 TTTTCCGGAGTTGCAGACAT 57.730 45.000 3.34 0.00 0.00 3.06
2743 5863 2.045561 TTTTTCCGGAGTTGCAGACA 57.954 45.000 3.34 0.00 0.00 3.41
2762 5882 6.076981 ACATCGAGTTTTCAGCTGATTTTT 57.923 33.333 19.04 4.05 0.00 1.94
2763 5883 5.695851 ACATCGAGTTTTCAGCTGATTTT 57.304 34.783 19.04 3.65 0.00 1.82
2764 5884 5.700832 TGTACATCGAGTTTTCAGCTGATTT 59.299 36.000 19.04 3.27 0.00 2.17
2765 5885 5.237815 TGTACATCGAGTTTTCAGCTGATT 58.762 37.500 19.04 3.66 0.00 2.57
2766 5886 4.820897 TGTACATCGAGTTTTCAGCTGAT 58.179 39.130 19.04 1.31 0.00 2.90
2767 5887 4.251543 TGTACATCGAGTTTTCAGCTGA 57.748 40.909 13.74 13.74 0.00 4.26
2768 5888 5.536554 AATGTACATCGAGTTTTCAGCTG 57.463 39.130 9.23 7.63 0.00 4.24
2769 5889 7.097192 TCTAAATGTACATCGAGTTTTCAGCT 58.903 34.615 9.23 0.00 0.00 4.24
2770 5890 7.275779 TCTCTAAATGTACATCGAGTTTTCAGC 59.724 37.037 20.23 0.00 0.00 4.26
2771 5891 8.689251 TCTCTAAATGTACATCGAGTTTTCAG 57.311 34.615 20.23 10.54 0.00 3.02
2772 5892 9.653287 AATCTCTAAATGTACATCGAGTTTTCA 57.347 29.630 20.23 8.78 0.00 2.69
2774 5894 9.653287 TGAATCTCTAAATGTACATCGAGTTTT 57.347 29.630 20.23 16.66 0.00 2.43
2775 5895 9.653287 TTGAATCTCTAAATGTACATCGAGTTT 57.347 29.630 20.23 18.68 0.00 2.66
2776 5896 9.653287 TTTGAATCTCTAAATGTACATCGAGTT 57.347 29.630 20.23 15.89 0.00 3.01
2777 5897 9.653287 TTTTGAATCTCTAAATGTACATCGAGT 57.347 29.630 20.23 9.30 0.00 4.18
2801 5921 7.064490 ACTGTTCGCATTTGAATTTGTCTTTTT 59.936 29.630 0.00 0.00 0.00 1.94
2802 5922 6.534793 ACTGTTCGCATTTGAATTTGTCTTTT 59.465 30.769 0.00 0.00 0.00 2.27
2803 5923 6.019640 CACTGTTCGCATTTGAATTTGTCTTT 60.020 34.615 0.00 0.00 0.00 2.52
2804 5924 5.459762 CACTGTTCGCATTTGAATTTGTCTT 59.540 36.000 0.00 0.00 0.00 3.01
2805 5925 4.977963 CACTGTTCGCATTTGAATTTGTCT 59.022 37.500 0.00 0.00 0.00 3.41
2806 5926 4.975502 TCACTGTTCGCATTTGAATTTGTC 59.024 37.500 0.00 0.00 0.00 3.18
2807 5927 4.930963 TCACTGTTCGCATTTGAATTTGT 58.069 34.783 0.00 0.00 0.00 2.83
2808 5928 5.886715 TTCACTGTTCGCATTTGAATTTG 57.113 34.783 0.00 0.00 29.37 2.32
2809 5929 5.050837 GCTTTCACTGTTCGCATTTGAATTT 60.051 36.000 0.00 0.00 32.48 1.82
2810 5930 4.445385 GCTTTCACTGTTCGCATTTGAATT 59.555 37.500 0.00 0.00 32.48 2.17
2811 5931 3.983344 GCTTTCACTGTTCGCATTTGAAT 59.017 39.130 0.00 0.00 32.48 2.57
2812 5932 3.371168 GCTTTCACTGTTCGCATTTGAA 58.629 40.909 0.00 0.00 31.25 2.69
2813 5933 2.601979 CGCTTTCACTGTTCGCATTTGA 60.602 45.455 0.00 0.00 0.00 2.69
2814 5934 1.710249 CGCTTTCACTGTTCGCATTTG 59.290 47.619 0.00 0.00 0.00 2.32
2815 5935 1.333619 ACGCTTTCACTGTTCGCATTT 59.666 42.857 0.00 0.00 0.00 2.32
2816 5936 0.944386 ACGCTTTCACTGTTCGCATT 59.056 45.000 0.00 0.00 0.00 3.56
2817 5937 0.235665 CACGCTTTCACTGTTCGCAT 59.764 50.000 0.00 0.00 0.00 4.73
2818 5938 1.641140 CACGCTTTCACTGTTCGCA 59.359 52.632 0.00 0.00 0.00 5.10
2819 5939 1.082756 CCACGCTTTCACTGTTCGC 60.083 57.895 0.00 0.00 0.00 4.70
2820 5940 1.157870 ACCCACGCTTTCACTGTTCG 61.158 55.000 0.00 0.00 0.00 3.95
2821 5941 0.307760 CACCCACGCTTTCACTGTTC 59.692 55.000 0.00 0.00 0.00 3.18
2822 5942 0.107410 TCACCCACGCTTTCACTGTT 60.107 50.000 0.00 0.00 0.00 3.16
2823 5943 0.107410 TTCACCCACGCTTTCACTGT 60.107 50.000 0.00 0.00 0.00 3.55
2824 5944 1.238439 ATTCACCCACGCTTTCACTG 58.762 50.000 0.00 0.00 0.00 3.66
2825 5945 2.699954 CTATTCACCCACGCTTTCACT 58.300 47.619 0.00 0.00 0.00 3.41
2826 5946 1.130561 GCTATTCACCCACGCTTTCAC 59.869 52.381 0.00 0.00 0.00 3.18
2827 5947 1.271108 TGCTATTCACCCACGCTTTCA 60.271 47.619 0.00 0.00 0.00 2.69
2828 5948 1.130561 GTGCTATTCACCCACGCTTTC 59.869 52.381 0.00 0.00 39.79 2.62
2829 5949 1.165270 GTGCTATTCACCCACGCTTT 58.835 50.000 0.00 0.00 39.79 3.51
2830 5950 0.324943 AGTGCTATTCACCCACGCTT 59.675 50.000 0.00 0.00 46.81 4.68
2831 5951 0.324943 AAGTGCTATTCACCCACGCT 59.675 50.000 0.00 0.00 46.81 5.07
2832 5952 1.135689 CAAAGTGCTATTCACCCACGC 60.136 52.381 0.00 0.00 46.81 5.34
2833 5953 2.422597 TCAAAGTGCTATTCACCCACG 58.577 47.619 0.00 0.00 46.81 4.94
2834 5954 6.699575 AATATCAAAGTGCTATTCACCCAC 57.300 37.500 0.00 0.00 46.81 4.61
2835 5955 8.995027 AATAATATCAAAGTGCTATTCACCCA 57.005 30.769 0.00 0.00 46.81 4.51
2836 5956 9.066892 TGAATAATATCAAAGTGCTATTCACCC 57.933 33.333 0.00 0.00 46.81 4.61
2882 6002 9.120538 GCTCCTAATTCAACTTACATTAATGGA 57.879 33.333 19.37 8.49 0.00 3.41
2883 6003 9.125026 AGCTCCTAATTCAACTTACATTAATGG 57.875 33.333 19.37 4.67 0.00 3.16
2884 6004 9.941664 CAGCTCCTAATTCAACTTACATTAATG 57.058 33.333 14.01 14.01 0.00 1.90
2885 6005 9.905713 TCAGCTCCTAATTCAACTTACATTAAT 57.094 29.630 0.00 0.00 0.00 1.40
2886 6006 9.733556 TTCAGCTCCTAATTCAACTTACATTAA 57.266 29.630 0.00 0.00 0.00 1.40
2887 6007 9.733556 TTTCAGCTCCTAATTCAACTTACATTA 57.266 29.630 0.00 0.00 0.00 1.90
2888 6008 8.515414 GTTTCAGCTCCTAATTCAACTTACATT 58.485 33.333 0.00 0.00 0.00 2.71
2889 6009 7.885399 AGTTTCAGCTCCTAATTCAACTTACAT 59.115 33.333 0.00 0.00 0.00 2.29
2890 6010 7.224297 AGTTTCAGCTCCTAATTCAACTTACA 58.776 34.615 0.00 0.00 0.00 2.41
2891 6011 7.674471 AGTTTCAGCTCCTAATTCAACTTAC 57.326 36.000 0.00 0.00 0.00 2.34
2892 6012 8.691661 AAAGTTTCAGCTCCTAATTCAACTTA 57.308 30.769 0.00 0.00 33.21 2.24
2893 6013 7.588497 AAAGTTTCAGCTCCTAATTCAACTT 57.412 32.000 0.00 0.00 35.29 2.66
2894 6014 7.588497 AAAAGTTTCAGCTCCTAATTCAACT 57.412 32.000 0.00 0.00 0.00 3.16
2916 6036 8.184848 TCAACGTTTGATGTACAATCTCAAAAA 58.815 29.630 19.57 2.43 39.74 1.94
2917 6037 7.698628 TCAACGTTTGATGTACAATCTCAAAA 58.301 30.769 19.57 6.29 39.74 2.44
2918 6038 7.252965 TCAACGTTTGATGTACAATCTCAAA 57.747 32.000 15.75 15.75 38.36 2.69
2919 6039 6.852858 TCAACGTTTGATGTACAATCTCAA 57.147 33.333 0.00 2.66 38.36 3.02
2944 6064 9.736023 AAAGATTCTGAAAAATTGTGTAGACAC 57.264 29.630 5.83 5.83 46.59 3.67
2945 6065 9.734620 CAAAGATTCTGAAAAATTGTGTAGACA 57.265 29.630 0.00 0.00 0.00 3.41
2946 6066 9.950680 TCAAAGATTCTGAAAAATTGTGTAGAC 57.049 29.630 0.00 0.00 0.00 2.59
2948 6068 8.909671 GCTCAAAGATTCTGAAAAATTGTGTAG 58.090 33.333 0.00 0.00 0.00 2.74
2949 6069 8.412456 TGCTCAAAGATTCTGAAAAATTGTGTA 58.588 29.630 0.00 0.00 0.00 2.90
2950 6070 7.267128 TGCTCAAAGATTCTGAAAAATTGTGT 58.733 30.769 0.00 0.00 0.00 3.72
2951 6071 7.703298 TGCTCAAAGATTCTGAAAAATTGTG 57.297 32.000 0.00 2.89 0.00 3.33
2952 6072 7.929785 ACATGCTCAAAGATTCTGAAAAATTGT 59.070 29.630 0.00 0.00 0.00 2.71
2953 6073 8.306680 ACATGCTCAAAGATTCTGAAAAATTG 57.693 30.769 0.00 0.61 0.00 2.32
2954 6074 8.897872 AACATGCTCAAAGATTCTGAAAAATT 57.102 26.923 0.00 0.00 0.00 1.82
2955 6075 8.897872 AAACATGCTCAAAGATTCTGAAAAAT 57.102 26.923 0.00 0.00 0.00 1.82
2956 6076 8.721019 AAAACATGCTCAAAGATTCTGAAAAA 57.279 26.923 0.00 0.00 0.00 1.94
2957 6077 8.721019 AAAAACATGCTCAAAGATTCTGAAAA 57.279 26.923 0.00 0.00 0.00 2.29
2958 6078 8.199449 AGAAAAACATGCTCAAAGATTCTGAAA 58.801 29.630 0.00 0.00 0.00 2.69
2959 6079 7.719483 AGAAAAACATGCTCAAAGATTCTGAA 58.281 30.769 0.00 0.00 0.00 3.02
2960 6080 7.281040 AGAAAAACATGCTCAAAGATTCTGA 57.719 32.000 0.00 0.00 0.00 3.27
2961 6081 7.941795 AAGAAAAACATGCTCAAAGATTCTG 57.058 32.000 0.00 0.00 0.00 3.02
2962 6082 8.953368 AAAAGAAAAACATGCTCAAAGATTCT 57.047 26.923 0.00 0.00 0.00 2.40
2963 6083 8.819974 TGAAAAGAAAAACATGCTCAAAGATTC 58.180 29.630 0.00 0.00 0.00 2.52
2964 6084 8.721019 TGAAAAGAAAAACATGCTCAAAGATT 57.279 26.923 0.00 0.00 0.00 2.40
2965 6085 8.721019 TTGAAAAGAAAAACATGCTCAAAGAT 57.279 26.923 0.00 0.00 0.00 2.40
2966 6086 8.545229 TTTGAAAAGAAAAACATGCTCAAAGA 57.455 26.923 0.00 0.00 30.38 2.52
2967 6087 9.609950 TTTTTGAAAAGAAAAACATGCTCAAAG 57.390 25.926 0.00 0.00 34.20 2.77
2999 6119 6.265196 GGAGACTTGTGTGAGATCTATGAGAT 59.735 42.308 0.00 0.00 37.73 2.75
3000 6120 5.592282 GGAGACTTGTGTGAGATCTATGAGA 59.408 44.000 0.00 0.00 0.00 3.27
3001 6121 5.221224 GGGAGACTTGTGTGAGATCTATGAG 60.221 48.000 0.00 0.00 0.00 2.90
3002 6122 4.646945 GGGAGACTTGTGTGAGATCTATGA 59.353 45.833 0.00 0.00 0.00 2.15
3003 6123 4.202202 GGGGAGACTTGTGTGAGATCTATG 60.202 50.000 0.00 0.00 0.00 2.23
3004 6124 3.964031 GGGGAGACTTGTGTGAGATCTAT 59.036 47.826 0.00 0.00 0.00 1.98
3005 6125 3.366396 GGGGAGACTTGTGTGAGATCTA 58.634 50.000 0.00 0.00 0.00 1.98
3006 6126 2.183679 GGGGAGACTTGTGTGAGATCT 58.816 52.381 0.00 0.00 0.00 2.75
3007 6127 1.208293 GGGGGAGACTTGTGTGAGATC 59.792 57.143 0.00 0.00 0.00 2.75
3008 6128 1.203364 AGGGGGAGACTTGTGTGAGAT 60.203 52.381 0.00 0.00 0.00 2.75
3009 6129 0.191064 AGGGGGAGACTTGTGTGAGA 59.809 55.000 0.00 0.00 0.00 3.27
3010 6130 1.002544 GAAGGGGGAGACTTGTGTGAG 59.997 57.143 0.00 0.00 0.00 3.51
3011 6131 1.056660 GAAGGGGGAGACTTGTGTGA 58.943 55.000 0.00 0.00 0.00 3.58
3012 6132 0.320771 CGAAGGGGGAGACTTGTGTG 60.321 60.000 0.00 0.00 0.00 3.82
3013 6133 2.058675 CGAAGGGGGAGACTTGTGT 58.941 57.895 0.00 0.00 0.00 3.72
3031 6151 2.665185 ACTTGCGAGGTTGCGACC 60.665 61.111 16.08 16.08 46.92 4.79
3032 6152 1.891060 CTGACTTGCGAGGTTGCGAC 61.891 60.000 5.79 0.00 37.81 5.19
3033 6153 1.664649 CTGACTTGCGAGGTTGCGA 60.665 57.895 5.79 0.00 37.81 5.10
3034 6154 2.671177 CCTGACTTGCGAGGTTGCG 61.671 63.158 5.79 0.00 37.81 4.85
3035 6155 2.970974 GCCTGACTTGCGAGGTTGC 61.971 63.158 5.79 0.00 0.00 4.17
3036 6156 1.165907 TTGCCTGACTTGCGAGGTTG 61.166 55.000 5.79 0.00 0.00 3.77
3037 6157 0.886490 CTTGCCTGACTTGCGAGGTT 60.886 55.000 5.79 0.00 36.72 3.50
3038 6158 1.302033 CTTGCCTGACTTGCGAGGT 60.302 57.895 5.79 0.00 36.72 3.85
3039 6159 3.571119 CTTGCCTGACTTGCGAGG 58.429 61.111 5.79 0.00 36.72 4.63
3040 6160 2.684843 GCCTTGCCTGACTTGCGAG 61.685 63.158 0.00 0.00 39.51 5.03
3041 6161 2.669569 GCCTTGCCTGACTTGCGA 60.670 61.111 0.00 0.00 0.00 5.10
3042 6162 4.093952 CGCCTTGCCTGACTTGCG 62.094 66.667 0.00 0.00 35.81 4.85
3043 6163 3.741476 CCGCCTTGCCTGACTTGC 61.741 66.667 0.00 0.00 0.00 4.01
3044 6164 3.741476 GCCGCCTTGCCTGACTTG 61.741 66.667 0.00 0.00 0.00 3.16
3075 6195 3.181479 TGCGGAAATGGCTACTACTGTAG 60.181 47.826 13.13 13.13 46.59 2.74
3079 6199 3.560636 AATGCGGAAATGGCTACTACT 57.439 42.857 0.00 0.00 0.00 2.57
3080 6200 3.303132 CGAAATGCGGAAATGGCTACTAC 60.303 47.826 0.00 0.00 36.03 2.73
3081 6201 2.869801 CGAAATGCGGAAATGGCTACTA 59.130 45.455 0.00 0.00 36.03 1.82
3083 6203 2.105323 CGAAATGCGGAAATGGCTAC 57.895 50.000 0.00 0.00 36.03 3.58
3101 7043 0.463654 TCAATTCTTCATCGCCCCCG 60.464 55.000 0.00 0.00 0.00 5.73
3140 7126 4.092383 GTGATGCCTTTCATTCATTGCAAC 59.908 41.667 0.00 0.00 35.05 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.