>input_sequence_57885
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-----------------------------------------------------------ATGGCGCTCGCAGCGACGCCA
CGCCAGCGGTCGGCGCCGGCCGTGCTGGTCGCGGCGGCGCTGCTCTCGCTTTCACTCTCACTCTCATGCGCGCAGGCGCA
GGCGCCGCACGTGGCGGTGCCACCCTCGGCTCCCCCGAAG---GCGGCGGCG---CCGGGCCCGGCCGCGGGGCTGAGCG
CGGCGTGCCTCAACTCGCTGCTCAACATGACGGACTGCCTGCCGTACGTGCAGGCCGGGAGCAAGGCGCGGGCGCCGGAC
AAGCCGTGCTGCCCGGAGCTGGCCGGCATGGTGGGCTCCAACCCCGTCTGCCTCTGCGAGCTCCTCTCCGGGGCCGCCGA
CTCCCTCGGCATCGCCGTCGACTACGCCCGCGCGCTCGCGCTCCCCGGCGTCTGCCGCGTCGCCACCCCGCCGCTCAGCA
CCTGCGCAGGTAGTAATAAACTAACTCGAGCCCTTCCGCTGCAGGTT-GCCGCTGGATTTGCTGCTCTACGAG----TCT
CTATTGAGGTGGATTTGATCTGTGTGGATATTATTCTCGCAGCAATGGGATACAATGTTCGTCTGGGCCCATCTCCGGCG
CCCGCGCCGGGATCTCCCTCGCCCATGTCGCCCGGCGACAGCCCGCAGTACCCTGCTGGTAAGCGCCGCCGCATGCAGTA
CTAGTAGAATTTCAGTTGTGGCTTCAGTTTAATAATTCTTTCTGGCTGCCCAAGAGTCAAAGACCAAGAGGAATGATTAA
TTACAAGAAATTGATAGTACTAGATGTTCGGAATTACTTGTCTCGAAAATGGATGTATCTAAAACTAAAATACGTTTAGA
TACATCCATTTTTGCGACAAGTAATTCCGAACAGAGGGAGTATTAGTTAAATATAATATATATATACATAAATAAAAGAA
GAGAAAAACCGAAGTAAGGCTGAAGCATT-------CAGTGGCCACATGTATGCTCGTAGGTGCAGAGTATAG-------
-------ACACAGTTTCAGTTCACGTGCTTGTCATCACGTA----------CTAGTGCCATGGAGCAGAGTACTGCAGTG
GTATAGTAGGC--GTACAACTAATATACTCCTGTATATGCCATCTCCGTCGCAGGTCCTTCGCCGTTCGCCTCGCCGCCG
GCGTCGCCGAAGCCCAGCCACGCCGCGCGCAGCATCCACGCCGCCGGCGTTCTCGTCGCCCTCGCCGCCTCCTTCGCCGT
CGGGATCGTGTTCTTCTAA-------------------------------------------------------------
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>chr1A_1_TraesCS1A01G306000
TCGCCTCAGCCGTGCACCGCCCAGCGCGACGTGACGCCATTGATTCCCAGGGAGAAAGAAGGCACGCACTCCACTTTGAC
ACTGCTATTTTTTTGCTTGATCTGAATGCCTGCCCGTGTGAGCAAGAACAGCTGTGTGTGCACTGCCATGCACGCATCGC
GCATGCCAAAGTC-------------------------------------------------------------------
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---------------------------------------------------------AAACTGTGTCTGTCGTCCTCGTC
CTCGTCCTCCTCCAGCCAGGCGTCGTCGACCGGTCGTGGAGTGCGCCGCCGGGAGCGCATTTATCGCCGGACAAGGAAGA
AGAAGAGCAGGAGGAGGAGAAGACGGACGTTCCATTCCGTCAGT-AATGGGAATGGCGGGATAGATCGACCATCGCG---
---TTCGTTTATGAGCAACGGACTGGTTCTAACCGTGCTCTTGCTGCCGTCATTGCCGCCATTGCTAACAAACAGCCTCC
AAAGCTAGCAA--TAGGACACCATCCTCATCCACAACACGTACTGGAAAGCACCATGCACGGGGTCATTATTTCTCCCAC
GAACTCAATCTCCATTTTGCAGCAAGAATTGAG--TGTCCATTGTAGACACACGGA------------------------
------GAGCTTTCTGAGTGGTTGCAGAGCTTGATGGGATGTGAATTCTCGTATCCGCTTCCTGCGGGATTCACGCTGTT
TCATTCATGCCAAATTCTCACCAAATTTGTGTTCAAAAAAAAAACTAACCAAATTTCACGTGAAATTCCTGCGAATCCTA
GA--GATAGATATGCATGCCCTTGAAATGCACCGAAAGTTGGCAGCCGCCGCTCGCCACGTAGTCCGCTCATTCGATGGC
ACACAACATCTGGCTGGTGCAGCCCAGTTGCCACCTCCCCCACGCTGCACGGCTATATAAACGCCACCTCCGATCC--GC
CACTGCACTACTACGCTCCAAGCCGCACCGC-----TCGCCCGCAT----CCTCCCTCCCGTCCGCCACCGCATTAATTC
GCT-CCCACCGCTTCCCAACAAACCCGCCGCCCGCCCTTGACCGCCGCAGGCCGCAGCCATGGCGCTCGCAGCGACGCCA
CGCCAGCGGTCGGCGCCGGCCGTGCTGGTCGCGGCGGCGCTGCTCTCGCTTTCACTCTCACTCTCATGCGCGCAGGCGCA
GGCGCCGCACGTGGCGGTGCCACCCTCGGCTCCCCCGAAG---GCGGCGGCG---CCGGGCCCGGCCGCGGGGCTGAGCG
CGGCGTGCCTCAACTCGCTGCTCAACATGACGGACTGCCTGCCGTACGTGCAGGCCGGGAGCAAGGCGCGGGCGCCGGAC
AAGCCGTGCTGCCCGGAGCTGGCCGGCATGGTGGGCTCCAACCCCGTCTGCCTCTGCGAGCTCCTCTCCGGGGCCGCCGA
CTCCCTCGGCATCGCCGTCGACTACGCCCGCGCGCTCGCGCTCCCCGGCGTCTGCCGCGTCGCCACCCCGCCGCTCAGCA
CCTGCGCAGGTAGTAATAAACTAACTCGAGCCCTTCCGCTGCAGGTT-GCCGCTGGATTTGCTGCTCTACGAG----TCT
CTATTGAGGTGGATTTGATCTGTGTGGATATTATTCTCGCAGCAATGGGATACAATGTTCGTCTGGGCCCATCTCCGGCG
CCCGCGCCGGGATCTCCCTCGCCCATGTCGCCCGGCGACAGCCCGCAGTACCCTGCTGGTAAGCGCCGCCGCATGCAGTA
CTAGTAGAATTTCAGTTGTGGCTTCAGTTTAATAATTCTTTCTGGCTGCCCAAGAGTCAAAGACCAAGAGGAATGATTAA
TTACAAGAAATTGATAGTACTAGATGTTCGGAATTACTTGTCTCGAAAATGGATGTATCTAAAACTAAAATACGTTTAGA
TACATCCATTTTTGCGACAAGTAATTCCGAACAGAGGGAGTATTAGTTAAATATAATATATATATACATAAATAAAAGAA
GAGAAAAACCGAAGTAAGGCTGAAGCATT-------CAGTGGCCACATGTATGCTCGTAGGTGCAGAGTATAG-------
-------ACACAGTTTCAGTTCACGTGCTTGTCATCACGTA----------CTAGTGCCATGGAGCAGAGTACTGCAGTG
GTATAGTAGGC--GTACAACTAATATACTCCTGTATATGCCATCTCCGTCGCAGGTCCTTCGCCGTTCGCCTCGCCGCCG
GCGTCGCCGAAGCCCAGCCACGCCGCGCGCAGCATCCACGCCGCCGGCGTTCTCGTCGCCCTCGCCGCCTCCTTCGCCGT
CGGGATCGTGTTCTTCTAAGCGGACACGGCC----AGCGAGGCTGTTCATCCTTCGATAAAAAACTGTCGCGTGAATGAT
TGGCATGCTTCTCAG------------TGTGTGCTAGTACTCCAGTATGATGATTCTAGGTATAGTAGATAAATACAGTA
CCAGTTATTTCCGGCCAACATGTTATGTGCTATGCTAATCAATTGATCCGTCGCTCACTCATAAACTCGTTCGTGACCTG
AGGTGTAGCAACTCTCGATAACATTGTCGTGTGCGCATGCGCCCTCGCATCACACCTTCCTCGTGAGTCGTGACGCCGAG
CCGTGGCCCGAACAAACATCCGTCAGTCGCATCAACTAAGCGTGCCCCCGTCCGGTTGCCATGCTCCATTACAGCACGAA
ATTCCTTCTAATTTCGTGCTGTACTCTACTAACACGGTACATTACGTATGAGTGCATGAATGTATGCTCAATCATTCATA
TCGCGGGGACATTTAGATGAGATTGTCAGATCAACCCTAAAAAAATCATATTTAGATGTTCTTTTAAAATCTGAAATTAT
TTGAGTACATCCATGTGGGGTATGTCTGCAACTCCGGAAAAAAAAATCAGCTGAAAACTCGATGTACATTTAGAGATTCA
AAAAAGACAAATTCAAATGCGAACAGTGAAAGCGTGGGTGAATAGCACTTTGATATTATTCAAATTCGATTCTTTTTTGT
TTCCATTAATGTAAGTTGAATTAGGAGCTGAAACTTTTTTGAGATTGTACATCAAACGTTGATGTGTCTACACAATTTTT
CAGAATCTTTGAGCATGTTTTTCTTTTCAAAAAAATCGATCTCATAGATCTCACACAAGTCTCCCCCTTCGGTCGCAACC
TCGCAAGTCAGGCAAGGCGGCAACCGCAAGGTGGCTACAGTAGTAGCCATTTCCGCAT----------------------
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TTCGGGGGCGATGAAGAATTGAATTCAAGGCACTTTCT------------------------------------------
--GCGGTTGCAATGAATGAAAGGCATCACCAGCCAGCAATCCCTCTCGTGATCCAGACGAG
>chr1D_1
TCGCCTCAGCTGTGCACCGTCG-GCGCGACGTGACGCCATTGATTCCCTGTGAGAAAGAAGGCACGCGCTCCACTCTGAA
ACTGCTATTTTTGAGCTTGATCTGAATACCTGCCCGTGTGAGAAAGAACAGCTGTGTGTGGACTGCCATGCACGCATCAC
GCATGCCAAAGTC-------------------------------------------------------------------
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---------------------------------------------------------AAACTGTGTCTGTCGTCCTCGTC
CTC------------------GTCGTCGACCGGCCGCCGAGTGCGCAGTCGCGAGCGCATTTATCGCCGGACAAGCAAGA
AGAAGAGCGGGAGACGGAGAAGATGGACGTTCCATTCCATCAGT-AATGGGAATGGCGGGATAGATAGGCCATCGCG---
---TTCGTTATGAC-CAACGGACTGGTTCTAACCGTGCTCCTGCTGCCGTCATTGCTAAC------AACAAACAGCCTCC
AAGGCTAGCTA--TAGGACACCATCCTCATCCACAACACGTACTGGAAGGCG----------------------------
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-----------------------------------------------------------------GGGATTCACGCTGTT
TCATTCATGTCAAATTCTCACCAAA----------------------------TTTCACGTGGAATTCCTGTGAATCCTA
GATAGATATG--TACATGCCCTTGAAATGCACCGAAAGTTGGCAGCCGCCGGTCGCCACGTACTCGGCTCATTCGATGGC
GCACAACAT----CTGGTGCAGCCCAGTTGCCACCTCCCCCACGCTCCACGGCTATATAAACACCGCCTCCGATCCTAGC
CGCTGCACTACTACAGTCCAAGCCGCACCGC-----TCTCTCGCTAGCCACCTCCCTCTCGTCCGCCACCGCATTAACTC
TTCGCCCACCGCTTCCCAACAAACCCGCCGCCCGCCCTTGACCGCG-------GCAGCCATGGCGCTCGCAGCGGCACAA
CGCCAGCGGTCGGCGTCGGCCGTGCTGGTCGCGGCGGTGCTGCTATCGCTTTCACTCTCACTCTCATGCGTGCAGGCGCA
GGCGCCGCACGTGGCGGTGCCACCTTCGGCTCCCCCGAAG---GCGGCGGCGGCGCCTGGGCCGGCCGCGGGGTTGAGCG
CGGCGTGCCTCAACTCGCTGCTCAACATGTCGGACTGCCTGCCGTACGTGCAGGCCGGGAGCAAGGCGCGGGCGCCGGAC
AAGCCGTGCTGCCCGGAGCTGGCCGGCATGGTGGGCTCCAACCCCGTCTGCCTCTGCGAGCTCCTCTCCGGGGCCGCCGA
CTCCCTCGGCATCGCCGTCGACTACGCCCGCGCGCTCGCGCTCCCCGGCGTCTGCCGCGTCGCCACCCCGCCCATCACCA
CCTGCGCAGGTAGTA---AACTAATTCGAGCCCTTCTGCTGCAGCTTGGCCGCTGGATTTGCTGCTCTATGAGCGAGTCT
CTCTTGAGGTGGATTTGATTTGTGTGGATATTATTCTTGCAGCAATGGGATACAACGTTCGTCTGGGCCCGTCTCCGGCG
CCCGCGCCGGGATCTCCCTCGCCCATGTCGCCCGGCGGCAGCCCACAGTACCCCGCTGGTAAGCGCCGCCGCATGCAG--
-TAGCAGAATTTCAGTTGCGGGTTCAGTTTAATAATTCTTTCTGGCTGCCCAAGAGTCAAAGACCAAGAGGAAGGATTAA
-TACAAGAAATTGATGGTACTAGGTA------------------------------------------------------
------------------------------------GTAGTATTAGTTAAATATATAAATAA-----------AAAAGAA
GCGAAAAACAGAAGTAATGCTAAAACATC-------CAGTGGCCATATGTATGCTCGTAGGTACAGAAGTA---------
--CAGACACACAGTTTCAGTTCACGTGCTTGTCATCACGTT----------CTAGTGCCATGGAGCCGAGTACTGTAGTG
GTATAGTAGTTGTGTACAACTAATATATACTGTACG-TGCCATCTCCGTCGCAGGTCCTTCGCCGTTCGCCTCGCCGCCG
GAGTCGCCCAAGCCCAGCCACGCGGCGCGCCGCTTCCACGCCGCCGGCGCCCTCGTCGCCCTCGCCGCCTCCTTCGCCGT
CGGGATGGCCTTCTTCTAAGCGGACAAGGCC----AGCGAGACTGTTAACCGTTCGATAAAAATCTGTCGCGTGAATGTC
ATGGACATGCTTTCTCCGTCTCTAGTCTGTGCGCTAGTACTCCAGTATGATGATTCTAGGTAGATAAGAT-AATACAGTA
CCAGTTATTTCCCGCCAATATGTTATGTGCTATGCTAATCAATTGATCTGTCGCTCACTGATAAACTCGTTCGTGGCGTG
AAGTGTAGCAACGCTCAGTAACATTGTCGTGTGCGCATGCTCCCTCATAT-----CTTCCTCGTGAC-------------
-----GCCCGAACAAACATCCGTCAGTCGCATCAACTAAGCGTGCTCCCGTCCGGTTGCCATTCTCCATTACAACACGAA
ATTCCTTCCAATTTC----------CTACTAACACACTAGTA---GTATGAGTG--TTCATATCACA-------------
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----AAGTCATACTAACATATATTAGTACTGTATATACGCGTATATATCGCAAAGTTAGCCTAATGCGTTTTCCGAGGCT
AACTTTGACCAAATATTAGAGCAATAATATATGACATGCAACTTACACAAAGCACACCGTTAAATTCGTGTGTGAAAGGA
GCTTCCAATGATATAATTTTCACATTGTGCATGTCATGTACTATTAATCTTGTCAATAGTCAAAAGCGGTCTTGAAAAAC
GCATTAGGCCCTATATAGATGGAAGGAGGGA-------------------------------------------------
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---------GTAGTCTTTATCGAAATATCAAAAAGACTTATATTCAGGAATGGAGGGAGTTCGCAGCAGGAATTTC----
-------GCGATGAAGCATTGAATTCAAAGGCGGTTGGTTGCGACTTGCGAGGATTGGAGGAGTGCTCGATACTTTCTGC
GAGCGAATGCAATGAATGAAAGGCATCACCAGCCAGCAATCCCTCTCGTGATCGAGACGAG
>chr1B_14
-------------GCACCGTCG-GCACGACGTGACGCCATTGATTCCCAGGGAGAAAGAAGGCACGCGCTCTACTTTGAA
ACTGATATTTT-TTGCTCGATCTGAATGCCTGCCCGTGT------GAACAGCTGTGTGTGGACTGCCATGCGGTGTTTCC
CGGATGTGCTGCTTCAAGCACTCTCCACCAACATCTCGAATCATGCGCCTCTACACCTTTCCACTTCGGCCCCCTTTTGC
CCGAAGCGCAGGTTCCGTTTTGAGTTATTCTGGACCCAGCTGGATGGATTTGAGCAGGCTGTTAAAGATGCGTGGGTGTG
TGAAGACGATATTGTTGATCCTTTCAAGAGGCTTGACCAGTTACTTAGAAACACCGCATCAGCCCTTCAAGCATGGGGGC
AAAAGAAGACTGGAAACATTAAAGTTCAATTGGCTGTGGCGAACTATGTCATCCTTAGGTTGGACAGGGCTATGGAGGCC
CGCGCCCTTAATTGAAGGGAGAGATGGTTGAGGAGGTCCCTCAAGCACTCGGTCCTAGGGCTTGCCTCCCTCCAACGCAT
CATTGAAAGACAACGCTCTAGACTGAGATGGATCCGAGAAGGTGATGCCAATACTAAACTCTTCCAAGCAGTGGCAAACA
GAAGGAGGTCTAAGAATTTCATCCCTCATATCAAACACAATGGGGAGTTGATTTCCTAGCAAGAAAGGAAGGAGGAGATC
TTCACCGAAGCTTATGAGCAGTTGTTGGGTCGTGCCGTTGCTAGGGAAGAAAATGTGGATATGGACTTCCTTGACATGGC
TGTGCACGATCTCGCGGATCTTGATGTGATCTTCACAGAGGATGAGGTGTGGAATACCATTACGGAATTGCATCCGGATC
GGGCGCCTGGGCCTGATGGGTTTAGCGCCGCTTTCTATCAAAAAGCTTGGTCCACAATTAAGAACGACGTCATGGCGGTG
CTCCTAAAGCTCTATGTGGGTGATTGGCGTGGTTTCGGCAAGCTTAACCGCGCCCACATCGTGATGATTCCGAAGAAGCC
GGACGCCGAGGAAGTGGGAGACTATCGCCCCATCAGCCTCCCTCATAGTGTGGCCAAGATTTTTGCTAAGTTGCTTGCGA
ATAGAGCACGAAGAAGAATGAAGGAGATAGTCACGGCAAATCAATCCGCCTTTATCTGCGGGAGGCACTTGCATGACAAC
TTTCTTCTTGTTAGGCAAGTTGCCAGGAAGATTCATGCGCGCAAGGAGGCTAGTGTGTTCTTGAAGCTTGATATCTCAAG
GGCCTTCGACTCGCTTAACTGGGTGTTTCTGTTCGAGGTGATGAGGACCAAAGGCTTTGGCCACAAGTGGTGCACTTGGA
TCTCGATCCTTCTCAAGACGGTTAGCACAAAGGTGATTGTTAATGGAGTTCCCGGTAGAAGTTTCACCCACGCCAAGGGA
CTTAGGCAGGGGGATCCGGTTTCGCCTTTGCTCTTTGTGATCGTCATGGATGTGCTGTCAAGAATCATGATCAAGGCTGA
GAGTTTTGGAGTTTGCAGTAGCTTCACTGGCATCGCTGCTCATCAATCTGTGTCGATCTACGCGGATGACGTGGCCCTGT
TCGTTAAACCCCGGGTGATGGACCTCACGTTCATCAGATCCGTGTTACACGCATTTGATGCAGCCTCTGGCCTATGGGTC
AACTATCAGAAGTCGCTAGCCATCATGATCCACGGGAACAACATTGACCGGGACCGGGTCGAGTCCATTCTGCATTGTCG
GATGGGGAGTTTCCCTTGTAAGTACCTTGGCCTTCAATTGGCCATTAGACAGCTCTCTAGGACGGAGTGGCAGCCCATGA
TCGACCAAGCCAAGAAGTCTGCCCCGGCCTGGCAGAGAGGTCTGCAAAGCCTATTCATCATTTCATGGTCACGGAAGCTC
CCGCTTGGGTGTTTGAAGAGTTAGATCAATGGATGCGCTCCTTCTTCTGGGCCGCCAAAGAGAAAGTCAACGGAGGTCAG
TGTTTGGTGGCTTGGAACTCAGTTTGTAAGCCCACGTGGCTTGGAGGTTTGGGCGTGCGCAACATGCAGCTACAAGGCTT
GGCGTTGAGAGTGAGGTGGGAGTGGCTGAGAAGGACGGACCCTGAGAGGTTGTGGCAAGGGTTACCCATGGTTGTGGACA
AAGAGACTCGAGCGGTGTTTGATAGCTTGGTGCACATTGAGGTTGGAGTGGGCAACAGAGTTCTGTTCTAGAGAGATAGA
TGGATTCACGGCTTTGTGGTAAAAGACATTGCACCGCATATACATGCCTTGGTGGACACAAGAACGATCAACCGTCGCAC
GTTGAGGAAGGCTTGCAAAATGCTAGATGGCTGCTGGACATCTCCGGTGAAGTTAACTTTGGTGGTCATTTGCAACTTCT
TCACCTAAACCTTGCAATCAGCATGGTGAACCGTGACCCCACTACGGAAGATTCTTTTTCTTGGCCGGCTGATCCTTCAG
GATGTTACACTGCCAAATCCACGTATCACAGGCTCTGTTTGGGTGCGGAGAGGGTCCCTTACGCCGCATGCATTTGGAAG
AGCTGGGCCCTCCTCAAGTGCAAAATATTTATGTGGTTGGCAGTTCAGCACCGGATTTGGACGTCTGATCGAAGAGCGAG
GCATGATCTTCAGGACGCTCCTTCTGTCTGCTATACGTGCCTTCAAGAAGAGGATAACGCGGAACACATTCTTGCTCAAT
GCGTTTACGCGAAAGAAGTGTGGCACTACATTTTTGAGGCGCTACGCCTTCAGGGCAGCATCCCGAAGCCGGAGGACCGC
TTTCTGGAGTGGTGGTTAGCTAGGAGAGCCCATTATAGAAAGGGTTCCAAGCGTGGTTTTGACACAGTGATCATTGTGAC
CGCTTGGGCCTTATGGAAGCAGCGCAACGCTAGAGTGTTCCACAGGACCAGTCAGCAGATGACGGCGCCAAATTTGGCCC
TCGCCATCATTGCGGAGCTCAAAGAATGGAGATTGGCGGGTTTGGGAGGAGGAGGCTATAGCAAGTTTTGTGAGAGTGTT
GGCATAGGATAATTGTAGGGTGTGCTAGGGTGTGTCTTCCCGATGGAAGCTCGCTTCCATCAAAAATCTTTTGTATATTG
TGCTTTGTTCTTCTCTTCTGGAAAAGTAAGGTACGCATTTGGCGTACTCTCGAAAAAAAATTATGTCTGTCGTCCTCATC
CTCCTCCACG------CAGGCGTCGTCGACCGGTCGTGGAGTGCGCCGCCGCGAGCGCATTTATCGTCGGACAAGGAAGA
AGAAGAGTGGGAGGAGGAGAAGATGGACGTTCCATTCCGTCAGTAAATGGGAATGGCGGGATAGATAGACCATCGCGCGT
TCGTTCGTTATGAC-CAACGGACTGGTTCTAACCGTGCTCCTGCTGCCGTCATTGCTAAC------AACAAACAGCCTCC
AAAGCTAGCTAGCTAGGACCCCATCCTCATCCACAACACGTACTGGAAGGCACAATGCTCGGGGCCATTGTTTCTCCCAT
GAACTCAATCTCCATTTTGCAGCAAGAAATTCAAATGTCCATTGTAGACGCACGGAAGTTCATGTTAGGGAAGTCGACAC
CAAACAGAGCTTTCTTAGTGGTTGGAGAGCTTGATGGGACGCGAATTCTCGTATCCGCGTCCTGC-GGATTCACGCTGCT
TCATTCATTTCAAATTCTCACCAAA----------------------------TTTCACGTGAAATACCTGCGAATCCTA
GATAGATAGATATACATGCCCTTGAAATGCACCGAAAGTTGGCAGCCGCCGCTCGCCACGTACTCCGCTCATTCGATGGC
ACACAACAT----CTGGTGCAGCCCAGTTGCCACCTCCCCCACGCTCCACGGCTATATAAACACCGCCTCCGATCCTAGC
CATTGGAGTACTACAGTCCAAGCCGCACCGCACCGCTCGCCAGCCT----CCTCCCTCTCGTCCGCCTCCGCATTAACTC
TTCGCCCACCGCTTCCCAACAAACCCGCCGCCCGCCCTTGACCGCG-------GCAGCCATGGCGCTCGCAGCGGCACCA
CGCCCGCGGTCGGCGCCGGCCGTGCTGGTCGCGGCGGTGCTGCTCTCGCTTTCGCTGTCGATGACGCCCGCGAC------
GGCGCAGCACGTGGCGGTGCCTCCTTCGGCTCCCCCGAAGGCGGCGGCGGCGGCGCCTGGGCCGGCCGCGGGATTGAGCG
CGGCGTGCCTCAACTCGCTGGTCAACATGTCGGACTGCCTGCCGTACGTGCAGGCCGGGAGCAAGGCGCGGGCGCCGGAC
AAGCCGTGCTGCCCGGAGCTGGCCGGCATGGTGGGCTCCAACCCCGTCTGCCTCTGCGAGCTCCTCTCCGGGGCCGCCGA
CTCCCTGGGCATCGCCGTCGACTACGCCCGCGCGCTCGCGCTCCCCGGCGTCTGCCGCGTCGCCACCCCGCCCATCACCA
CCTGCGCAGGTAATA---AACTAACTCGAGCCCTTCTGCTGCAGGTT-GCCGCTGGATTTGCTGCTCTATGG----GTCT
CTCTTGAGGTGGATTTGATTTGTATGGATGTTTTTCTTGCAGCAATGGGCTACAATGTTCGTCTGGGCCCATCTCCGGCG
CCCGCGCCGGGATCTCCCTCGCCCATGTCGCCCAGCGGCAGCCCACAGTACCCTGCTGGTAAGCGCCGCCGCATGCAG--
-TAGTAGAATTTCAGTTGGGGGTTCAGTTTAATAATTCTTTCTGGCTGCCCAAGAGTCAAAGACCAAGATCAAGGATTAA
TG-CAAGAAATTGATGGTACTAGGTA------------------------------------------------------
------------------------------------GTAGCATTAGTTAAATATGTAAATAA-----------AAAAGAA
GCGAAAAACAGAAGTAATGCTAAAACATTCAGTGCTCAGTGGCCATACCTATGCTCGTAGGTACAGAGTACAGACACACA
GTCATACACACAGTTCCAGTTCACGTGCTTGTCATCACGTAGGAGTACTAGCTAGTGCCATGGAGCCGAGTACCGTAGTG
GTATAGTAGTC--GTACAACTAATAC-------TATATGCCATCTCAATCGCAGGTCCTTCGCCGTTCGCCTCGCCGCCG
GAGTCGCCCAAGCCCAGCCACGCGGCGCGCCGCATCCACGCCGCCGGCGTCCTCGCCGCCCTCGCCGCCTCCTTCGCCGT
CGGGATGGCGCTCTTCTAGGAGGGCAAGGCCAGCGAGCGAGACTGTTAACCGTTCGATAAAAATCTGTCGCGTGAATGTC
ATGGACATGCGTTCTCCGTCTCTAGTCTGTGCGTTAGTACTCCAGTATGATGATTCTAGGT-----AGAT-AATACAGTA
CCAGTTATTTCCCGCCAATATGTTACTGTGTGTGCTAATCAATTGATCTGTCGCTCACTGATAAACTCGTTCGTGACGTG
AAGTGTTGCAACTCTCAATAACATTGGCGTGTGCGCATGCGCCCTCATAG-----CTTCCTCGTGACA------------
------CCCGAACAAACATCCATCAGTCGCATCAACTAAGCGTGCTCCCGTCCGGTTGCCATGCTCCGTTACAACACGAA
ATTCCTTCCAATTTC----------CTACTAACACACTAGTA---GTATGAGTGTGTTCATATCGCA-------------
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----AAGTCAGGCACGGCAGCAACCGTAAAGGCATCCCTCCATTTGTAAATGTAAGTCTTTTTAGAGATTCCAATGCGTA
TGTTCATCCGTACATCTGTTTAATAGCTGAACCGCACCGGAAAAAAGTGGATCAACCCTCCTCTTGCCGCTCCCGCGGGC
GACAGGGGAGGCCTCCCGCCGCCGCAGGTTCCCGTCCCCCCTTTTCCTTCAGTCCCCTCGCCGTCGCCCAGGCGCGTCGG
CCAGCGAAGCCTGCCTGGCGTGGGCGGCGGCGGGACGCCTCTCCCCTTCGTCGTTTGGCTGGCACGGGACGGCCAGATCG
ATGGAAAGCGCTGGGCTAGCGTGGGGCACGACGGTTGGCAGCGGGCGCTCCTGCCGGCGGCGTGCGGTCGTCCTTTTTAG
AGATTCCAATGCGTATGTACATCCGTACATCTGTTTAATAGCTGAACCGCACCGAAAAAAGTGGATCAACCCTTCTCTGC
CGCTCCCGTGGGCGACATGGGAGGCCTCCCGCCGCCGGCGGTTCCCGTCCCCCCTTTTCCTCCAGTCCCCTCGCCGCCGC
CCAGGCGCGCCGGCCGGCGAAGCCTGCCTGGTGTGGGCGGCGGCTGGACGCCTCTCCCCTTCGTCGTTTGGCTGGCACAG
GACGGCCAGATCGATGGAAGGCGCTGGGCTAGCGTGGGGCACGGCGGCGTGGCAGCGGGCACTCCTGGCGGCGGCGTGCG
GTTGGCGCGATGACGCTATGAGAATAATTAATAAAGTGGCCGTATGCATCGCCCAGATGCAGAGGGTCCTCCTCCTTTTC
TAAAAAAATGTAGTCTTTATTGAAAAA-------GACTTGTATTCAGGAACGGAGGGAGTTCTTAGTAGGAATTTCCACG
TTTGGGGGCGATGAAGCATTGAATTGAAAGGCGGTTGGTTGCGAGGATT----------GGAGTGCTCGATACTTTCTGC
AAGCGATTGCAATGAATGAAAGGCATCACCAGCCAGC------------------------
>SNPs
----------S--------S-SS--------------------------------------------S-----------S
------------------------------------------S-----------------S-----------------S-
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---S---S-SSSSSSS-----------------------------------S----------------------------
--------S--------------S------------------------------------------S-------------
---------SSSSSS-------------------------S---------------SSS-SSSSSS--------------
---------S--------------------------------------S----S----S-----S----S---------S
----------------------------S-SSS----------------S------------------------------
---------------S--------S--------------S-S----------------S---------------------
---------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
-------------S------------------------------------------------S-----------------
---------SSSS---------------------------------S---------------S--S--------------
--------------SS----------------------------S-------------S------------------S--
SSS------------------------------------------SSSSSSSS---------------------S-S---
-------------------------------------S------------------------------------------
------------------------S--------------------------------S--S------------S------
-----------------------------S--------------------------------------------------
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------------------------------------------------------------------------SS---S--
---------------SSS------------------S--------------------------------S----------
--S----------------S-----------------S------------------------------------------
-------------------------------------S------S---------------------------------SS
S-----------------S--S---------------------------------------------------S------
---------------S-------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-----------------SS-SSS-SSSSSSSSSSS-------
-S-------S-------S---S--S--------------------S----------------S-------S---------
------------------------------------------------------------------S--------S----
---------S-----------------SS-SSS-----------------------------------------------
-S------S--------------S------S-------------------S-----------------------------
------S-S-----------------S--------------S-----S-S-S-----------S--------------SS
SS-S-SSSSSS-SSS----------------S------------------------------S-SS----S---------
------------S-----S-----------------------------S----------S-----------------S--
-S--------------S-----------------------------SS--SSSSS-----------SSSSSSSSSSSSSS
SSSSS----------------------------------------S---------------------------S------
--------S------SSSSSSSSSS----------SS--SSSSSS---------SS-SS--S-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS--------------S-------S--S--SSS---SSS-S---SS-S-SSS-SSS----------------------
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--S-------------S-----------S-SSSS--SS------------------------------------------
-----S-----------------------------------------------S-------
>forward_3371
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-----------------------------------------------------------------------TCGACCATC
GCGTTCGTTTA---------------------------------------------------------------------
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-------------------------------------------------------------
>reverse_5361
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TGGCATGCTTCTCAGTGTGT------------------------------------------------------------
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-------------------------------------------------------------
