Multiple sequence alignment - TraesCS1A01G304000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G304000 chr1A 100.000 3476 0 0 1 3476 497344478 497347953 0.000000e+00 6420
1 TraesCS1A01G304000 chr1A 93.966 232 14 0 3245 3476 264364536 264364305 5.520000e-93 351
2 TraesCS1A01G304000 chr1A 93.590 234 15 0 3243 3476 553135059 553135292 1.990000e-92 350
3 TraesCS1A01G304000 chr1A 85.124 121 16 1 90 208 497339430 497339550 4.710000e-24 122
4 TraesCS1A01G304000 chr1B 90.912 2685 156 42 220 2874 539459130 539461756 0.000000e+00 3526
5 TraesCS1A01G304000 chr1B 91.026 390 20 8 2865 3245 539466141 539466524 2.390000e-141 512
6 TraesCS1A01G304000 chr1B 89.952 209 6 5 1 208 539458873 539459067 4.450000e-64 255
7 TraesCS1A01G304000 chr1D 94.071 1636 80 8 987 2622 401357592 401359210 0.000000e+00 2468
8 TraesCS1A01G304000 chr1D 94.870 1150 51 4 1475 2624 401435520 401436661 0.000000e+00 1790
9 TraesCS1A01G304000 chr1D 93.603 938 40 7 30 951 401356586 401357519 0.000000e+00 1382
10 TraesCS1A01G304000 chr1D 91.791 268 17 3 2980 3245 401437201 401437465 5.480000e-98 368
11 TraesCS1A01G304000 chr1D 93.846 130 8 0 2980 3109 401359746 401359875 2.740000e-46 196
12 TraesCS1A01G304000 chr1D 85.124 121 16 1 90 208 401285467 401285587 4.710000e-24 122
13 TraesCS1A01G304000 chr7A 96.983 232 7 0 3245 3476 54941992 54941761 1.170000e-104 390
14 TraesCS1A01G304000 chr7A 96.552 232 8 0 3245 3476 12804972 12804741 5.440000e-103 385
15 TraesCS1A01G304000 chr7A 94.515 237 11 1 3242 3476 113360551 113360315 7.090000e-97 364
16 TraesCS1A01G304000 chr7A 94.043 235 14 0 3242 3476 713223471 713223705 1.190000e-94 357
17 TraesCS1A01G304000 chr7A 93.966 232 14 0 3245 3476 463678404 463678635 5.520000e-93 351
18 TraesCS1A01G304000 chr2A 96.121 232 9 0 3245 3476 52271562 52271331 2.530000e-101 379
19 TraesCS1A01G304000 chr5A 93.534 232 15 0 3245 3476 708803910 708804141 2.570000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G304000 chr1A 497344478 497347953 3475 False 6420.000000 6420 100.0000 1 3476 1 chr1A.!!$F2 3475
1 TraesCS1A01G304000 chr1B 539458873 539461756 2883 False 1890.500000 3526 90.4320 1 2874 2 chr1B.!!$F2 2873
2 TraesCS1A01G304000 chr1D 401356586 401359875 3289 False 1348.666667 2468 93.8400 30 3109 3 chr1D.!!$F2 3079
3 TraesCS1A01G304000 chr1D 401435520 401437465 1945 False 1079.000000 1790 93.3305 1475 3245 2 chr1D.!!$F3 1770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 551 1.381872 TCAGGACTCTGGCTAGCCC 60.382 63.158 30.81 14.66 41.23 5.19 F
1047 1156 1.439228 CTCCTCGGTCGACATGCAT 59.561 57.895 18.91 0.00 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 2294 0.683504 AGGACGCCGTTCTCTACCAT 60.684 55.0 0.00 0.0 0.00 3.55 R
2524 2638 0.171455 GAGACCGTCTCGCAATGACT 59.829 55.0 12.74 0.0 33.35 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.516198 ACTCTTTCCTCTATATCCTTCTTAGGT 58.484 37.037 0.00 0.00 42.60 3.08
54 55 9.213777 TCTATATCCTTCTTAGGTGTGTTCAAT 57.786 33.333 0.00 0.00 42.60 2.57
57 58 9.784531 ATATCCTTCTTAGGTGTGTTCAATATG 57.215 33.333 0.00 0.00 42.60 1.78
89 90 1.489649 AGTCAGATGGCTGCTGCTTAT 59.510 47.619 15.64 10.13 42.01 1.73
216 219 1.399727 CGATCGTGGTTTGTTTCTGGC 60.400 52.381 7.03 0.00 0.00 4.85
233 287 4.901868 TCTGGCCCGGTTTATATATTGTC 58.098 43.478 0.00 0.00 0.00 3.18
251 305 6.932356 ATTGTCACTACCTATGCTTTGATG 57.068 37.500 0.00 0.00 0.00 3.07
496 551 1.381872 TCAGGACTCTGGCTAGCCC 60.382 63.158 30.81 14.66 41.23 5.19
722 789 6.031751 TGGTAACATTTGCCTTGGATTAAC 57.968 37.500 0.00 0.00 46.17 2.01
730 797 4.249638 TGCCTTGGATTAACTGGCTAAT 57.750 40.909 0.00 0.00 43.57 1.73
746 813 4.771577 TGGCTAATCAATTGCTCCTTTGAA 59.228 37.500 0.00 0.00 35.63 2.69
760 827 5.565637 GCTCCTTTGAATTTCCAGAGAAACC 60.566 44.000 0.00 0.00 44.57 3.27
829 900 1.475280 GCCAATCTCAATGCAGCTCAA 59.525 47.619 0.00 0.00 0.00 3.02
839 910 4.763279 TCAATGCAGCTCAAAGAATCTTCA 59.237 37.500 0.00 0.00 0.00 3.02
847 918 1.808945 CAAAGAATCTTCAGGCTGCGT 59.191 47.619 10.34 0.00 0.00 5.24
906 977 5.905913 AGCTTCCAGGTTGACCTAGTAATAT 59.094 40.000 1.66 0.00 46.65 1.28
907 978 5.992217 GCTTCCAGGTTGACCTAGTAATATG 59.008 44.000 1.66 0.00 46.65 1.78
917 988 6.136857 TGACCTAGTAATATGGCTCTGACTT 58.863 40.000 0.00 0.00 0.00 3.01
943 1015 2.655090 TCAATCAGGCCACACTTGAA 57.345 45.000 5.01 0.00 0.00 2.69
951 1023 4.101585 TCAGGCCACACTTGAATCCTATAG 59.898 45.833 5.01 0.00 0.00 1.31
952 1024 3.392616 AGGCCACACTTGAATCCTATAGG 59.607 47.826 13.07 13.07 0.00 2.57
953 1025 3.142174 GCCACACTTGAATCCTATAGGC 58.858 50.000 14.50 0.75 34.44 3.93
954 1026 3.181450 GCCACACTTGAATCCTATAGGCT 60.181 47.826 14.50 0.69 35.63 4.58
955 1027 4.040461 GCCACACTTGAATCCTATAGGCTA 59.960 45.833 14.50 0.00 35.63 3.93
956 1028 5.280215 GCCACACTTGAATCCTATAGGCTAT 60.280 44.000 14.50 12.41 35.63 2.97
957 1029 6.070767 GCCACACTTGAATCCTATAGGCTATA 60.071 42.308 14.50 13.39 35.63 1.31
958 1030 7.365117 GCCACACTTGAATCCTATAGGCTATAT 60.365 40.741 14.50 0.00 35.63 0.86
959 1031 9.201989 CCACACTTGAATCCTATAGGCTATATA 57.798 37.037 14.50 6.90 34.44 0.86
1047 1156 1.439228 CTCCTCGGTCGACATGCAT 59.561 57.895 18.91 0.00 0.00 3.96
1057 1166 1.594397 TCGACATGCATGATTCTTCGC 59.406 47.619 32.75 9.83 0.00 4.70
1155 1264 1.910580 GCTTCATCCACCCCGAGGAA 61.911 60.000 0.00 0.00 38.93 3.36
1184 1293 4.807039 CGGCAAGGTCGTACCGGG 62.807 72.222 6.32 0.00 44.90 5.73
1190 1299 4.765449 GGTCGTACCGGGGTTGGC 62.765 72.222 6.32 0.00 0.00 4.52
1191 1300 3.698820 GTCGTACCGGGGTTGGCT 61.699 66.667 6.32 0.00 0.00 4.75
1235 1344 1.935327 GAGGAGGTGGAGTTCGACGG 61.935 65.000 0.00 0.00 0.00 4.79
1332 1444 2.371259 GGAGGAGAAGGAGGCCCAC 61.371 68.421 0.00 0.00 33.88 4.61
2232 2344 4.382320 GGGAACGTGCTGGCGGTA 62.382 66.667 0.00 0.00 35.98 4.02
2524 2638 1.762708 GCCATGCCAGGTTTAGCTAA 58.237 50.000 0.86 0.86 0.00 3.09
2540 2654 1.736032 GCTAAGTCATTGCGAGACGGT 60.736 52.381 0.00 0.00 40.84 4.83
2541 2655 2.186076 CTAAGTCATTGCGAGACGGTC 58.814 52.381 0.00 0.00 40.84 4.79
2542 2656 0.603569 AAGTCATTGCGAGACGGTCT 59.396 50.000 11.09 11.09 40.84 3.85
2543 2657 0.171455 AGTCATTGCGAGACGGTCTC 59.829 55.000 24.85 24.85 40.84 3.36
2578 2692 3.634504 AGCTCCATTTGGCATATTGTGA 58.365 40.909 0.00 0.00 34.44 3.58
2629 2777 5.229423 TGGTTGTTTCTGCATGCTAATTTC 58.771 37.500 20.33 5.89 0.00 2.17
2663 2811 8.340618 TGCTACTTTTTCTAGCAAAATCTCAT 57.659 30.769 0.65 0.00 42.89 2.90
2664 2812 8.239314 TGCTACTTTTTCTAGCAAAATCTCATG 58.761 33.333 0.65 0.00 42.89 3.07
2665 2813 7.699812 GCTACTTTTTCTAGCAAAATCTCATGG 59.300 37.037 0.65 0.00 37.22 3.66
2666 2814 7.530426 ACTTTTTCTAGCAAAATCTCATGGT 57.470 32.000 0.65 0.00 0.00 3.55
2667 2815 7.955918 ACTTTTTCTAGCAAAATCTCATGGTT 58.044 30.769 0.65 0.00 0.00 3.67
2672 2820 4.510038 AGCAAAATCTCATGGTTGTCAC 57.490 40.909 0.00 0.00 0.00 3.67
2677 2825 6.516527 GCAAAATCTCATGGTTGTCACCTAAA 60.517 38.462 0.00 0.00 44.61 1.85
2691 2839 1.148310 CCTAAACCTGCACACTGACG 58.852 55.000 0.00 0.00 0.00 4.35
2760 2908 8.409358 AAATGTTGGTAGTCTAGCAAAATCTT 57.591 30.769 22.12 16.43 46.30 2.40
2761 2909 6.801539 TGTTGGTAGTCTAGCAAAATCTTG 57.198 37.500 22.67 0.00 46.30 3.02
2765 2913 5.248477 TGGTAGTCTAGCAAAATCTTGGTCT 59.752 40.000 9.32 0.00 42.24 3.85
2789 2937 0.541392 AACCTGCACACTGACACTGA 59.459 50.000 0.00 0.00 0.00 3.41
2809 2957 9.903682 ACACTGATCAGTTCAAAATTATCTTTG 57.096 29.630 25.84 10.91 40.20 2.77
2820 2968 8.801715 TCAAAATTATCTTTGAAAGAGCACAC 57.198 30.769 13.56 0.00 41.25 3.82
2824 2972 8.976986 AATTATCTTTGAAAGAGCACACATTC 57.023 30.769 13.56 0.00 41.61 2.67
2879 3037 3.321497 GAGTTGATGCGAGGATATGGTC 58.679 50.000 0.00 0.00 0.00 4.02
2890 3048 5.559035 GCGAGGATATGGTCGAAATTTTCTG 60.559 44.000 7.50 1.97 38.50 3.02
2891 3049 5.523916 CGAGGATATGGTCGAAATTTTCTGT 59.476 40.000 7.50 0.00 38.50 3.41
2913 3071 2.961741 TGTGTTTAAAATGCAGCAGGGA 59.038 40.909 0.00 0.00 0.00 4.20
2920 3078 4.725790 AAAATGCAGCAGGGAGATTTAC 57.274 40.909 0.00 0.00 0.00 2.01
2945 3103 9.672673 ACTTCAATCAGTACATATTTTGCTACT 57.327 29.630 0.00 0.00 0.00 2.57
2946 3104 9.926751 CTTCAATCAGTACATATTTTGCTACTG 57.073 33.333 0.00 0.00 39.14 2.74
2970 3136 3.913548 TTCACAAATCCACATCAACCG 57.086 42.857 0.00 0.00 0.00 4.44
2977 3143 2.552599 TCCACATCAACCGCAAACTA 57.447 45.000 0.00 0.00 0.00 2.24
2994 3303 4.759516 AACTAACTTAAATGTGCCGTGG 57.240 40.909 0.00 0.00 0.00 4.94
3026 3335 7.447374 TCCAATTCGTTTCTTTGATGTACAT 57.553 32.000 8.43 8.43 0.00 2.29
3069 3378 2.161012 CACATGTGTTCAAGGCTGCTAG 59.839 50.000 18.03 0.00 0.00 3.42
3117 3426 3.817084 TGAACTCATGCTGAAAAGGACTG 59.183 43.478 0.00 0.00 0.00 3.51
3136 3445 5.343325 GGACTGCGCATAAAGAAAAGAAAAG 59.657 40.000 12.24 0.00 0.00 2.27
3168 3479 9.875675 CTCAATCATTACTATTCTTTAGCAAGC 57.124 33.333 0.00 0.00 0.00 4.01
3170 3481 9.875675 CAATCATTACTATTCTTTAGCAAGCTC 57.124 33.333 0.00 0.00 0.00 4.09
3171 3482 9.618890 AATCATTACTATTCTTTAGCAAGCTCA 57.381 29.630 0.00 0.00 0.00 4.26
3192 3503 6.647212 TCAGTGCTCATTAACGTGATAAAG 57.353 37.500 0.00 0.00 0.00 1.85
3205 3516 4.222145 ACGTGATAAAGGGAAAGAGCAGTA 59.778 41.667 0.00 0.00 0.00 2.74
3206 3517 5.104900 ACGTGATAAAGGGAAAGAGCAGTAT 60.105 40.000 0.00 0.00 0.00 2.12
3221 3532 9.905713 AAAGAGCAGTATCATTTCATAAGGTAA 57.094 29.630 0.00 0.00 0.00 2.85
3246 3557 9.503399 AAGATAAAAACCAAGTAGTCACTAAGG 57.497 33.333 0.00 0.00 36.58 2.69
3247 3558 7.606839 AGATAAAAACCAAGTAGTCACTAAGGC 59.393 37.037 0.00 0.00 34.82 4.35
3248 3559 4.976540 AAACCAAGTAGTCACTAAGGCT 57.023 40.909 0.00 0.00 34.82 4.58
3249 3560 3.963428 ACCAAGTAGTCACTAAGGCTG 57.037 47.619 0.00 0.00 34.82 4.85
3250 3561 2.567615 ACCAAGTAGTCACTAAGGCTGG 59.432 50.000 0.00 0.00 34.91 4.85
3251 3562 2.567615 CCAAGTAGTCACTAAGGCTGGT 59.432 50.000 0.00 0.00 33.48 4.00
3252 3563 3.008049 CCAAGTAGTCACTAAGGCTGGTT 59.992 47.826 0.00 0.00 33.48 3.67
3253 3564 3.963428 AGTAGTCACTAAGGCTGGTTG 57.037 47.619 0.00 0.00 31.94 3.77
3254 3565 3.240302 AGTAGTCACTAAGGCTGGTTGT 58.760 45.455 0.00 0.00 31.94 3.32
3255 3566 4.413760 AGTAGTCACTAAGGCTGGTTGTA 58.586 43.478 0.00 0.00 31.94 2.41
3256 3567 4.836736 AGTAGTCACTAAGGCTGGTTGTAA 59.163 41.667 0.00 0.00 31.94 2.41
3257 3568 4.910458 AGTCACTAAGGCTGGTTGTAAT 57.090 40.909 0.00 0.00 0.00 1.89
3258 3569 4.579869 AGTCACTAAGGCTGGTTGTAATG 58.420 43.478 0.00 0.00 0.00 1.90
3259 3570 3.689649 GTCACTAAGGCTGGTTGTAATGG 59.310 47.826 0.00 0.00 0.00 3.16
3260 3571 3.585289 TCACTAAGGCTGGTTGTAATGGA 59.415 43.478 0.00 0.00 0.00 3.41
3261 3572 3.941483 CACTAAGGCTGGTTGTAATGGAG 59.059 47.826 0.00 0.00 0.00 3.86
3262 3573 3.844211 ACTAAGGCTGGTTGTAATGGAGA 59.156 43.478 0.00 0.00 0.00 3.71
3263 3574 3.356529 AAGGCTGGTTGTAATGGAGAG 57.643 47.619 0.00 0.00 0.00 3.20
3264 3575 2.269940 AGGCTGGTTGTAATGGAGAGT 58.730 47.619 0.00 0.00 0.00 3.24
3265 3576 3.450904 AGGCTGGTTGTAATGGAGAGTA 58.549 45.455 0.00 0.00 0.00 2.59
3266 3577 4.040755 AGGCTGGTTGTAATGGAGAGTAT 58.959 43.478 0.00 0.00 0.00 2.12
3267 3578 4.101741 AGGCTGGTTGTAATGGAGAGTATC 59.898 45.833 0.00 0.00 0.00 2.24
3268 3579 4.141711 GGCTGGTTGTAATGGAGAGTATCA 60.142 45.833 0.00 0.00 37.82 2.15
3269 3580 5.455326 GGCTGGTTGTAATGGAGAGTATCAT 60.455 44.000 0.00 0.00 37.82 2.45
3270 3581 6.239600 GGCTGGTTGTAATGGAGAGTATCATA 60.240 42.308 0.00 0.00 37.82 2.15
3271 3582 7.390027 GCTGGTTGTAATGGAGAGTATCATAT 58.610 38.462 0.00 0.00 37.82 1.78
3272 3583 8.531982 GCTGGTTGTAATGGAGAGTATCATATA 58.468 37.037 0.00 0.00 37.82 0.86
3273 3584 9.862371 CTGGTTGTAATGGAGAGTATCATATAC 57.138 37.037 0.00 0.00 37.82 1.47
3274 3585 9.601810 TGGTTGTAATGGAGAGTATCATATACT 57.398 33.333 0.00 0.00 37.82 2.12
3313 3624 8.405418 TGATACTAATGTGTGATACTACCTCC 57.595 38.462 0.00 0.00 0.00 4.30
3314 3625 5.769484 ACTAATGTGTGATACTACCTCCG 57.231 43.478 0.00 0.00 0.00 4.63
3315 3626 5.198965 ACTAATGTGTGATACTACCTCCGT 58.801 41.667 0.00 0.00 0.00 4.69
3316 3627 6.359804 ACTAATGTGTGATACTACCTCCGTA 58.640 40.000 0.00 0.00 0.00 4.02
3317 3628 6.830324 ACTAATGTGTGATACTACCTCCGTAA 59.170 38.462 0.00 0.00 0.00 3.18
3318 3629 6.726490 AATGTGTGATACTACCTCCGTAAT 57.274 37.500 0.00 0.00 0.00 1.89
3319 3630 5.509716 TGTGTGATACTACCTCCGTAATG 57.490 43.478 0.00 0.00 0.00 1.90
3320 3631 4.202080 TGTGTGATACTACCTCCGTAATGC 60.202 45.833 0.00 0.00 0.00 3.56
3321 3632 3.955551 TGTGATACTACCTCCGTAATGCA 59.044 43.478 0.00 0.00 0.00 3.96
3322 3633 4.587262 TGTGATACTACCTCCGTAATGCAT 59.413 41.667 0.00 0.00 0.00 3.96
3323 3634 5.771165 TGTGATACTACCTCCGTAATGCATA 59.229 40.000 0.00 0.00 0.00 3.14
3324 3635 6.436218 TGTGATACTACCTCCGTAATGCATAT 59.564 38.462 0.00 0.00 0.00 1.78
3325 3636 7.039293 TGTGATACTACCTCCGTAATGCATATT 60.039 37.037 0.00 0.00 0.00 1.28
3326 3637 8.464404 GTGATACTACCTCCGTAATGCATATTA 58.536 37.037 0.00 0.00 0.00 0.98
3327 3638 9.197306 TGATACTACCTCCGTAATGCATATTAT 57.803 33.333 0.00 0.00 31.81 1.28
3328 3639 9.680315 GATACTACCTCCGTAATGCATATTATC 57.320 37.037 0.00 0.00 31.81 1.75
3329 3640 7.476540 ACTACCTCCGTAATGCATATTATCA 57.523 36.000 0.00 0.00 31.81 2.15
3330 3641 8.079211 ACTACCTCCGTAATGCATATTATCAT 57.921 34.615 0.00 0.00 31.81 2.45
3331 3642 9.197306 ACTACCTCCGTAATGCATATTATCATA 57.803 33.333 0.00 0.00 31.81 2.15
3333 3644 8.948631 ACCTCCGTAATGCATATTATCATAAG 57.051 34.615 0.00 0.00 31.81 1.73
3334 3645 8.540388 ACCTCCGTAATGCATATTATCATAAGT 58.460 33.333 0.00 0.00 31.81 2.24
3335 3646 9.383519 CCTCCGTAATGCATATTATCATAAGTT 57.616 33.333 0.00 0.00 31.81 2.66
3367 3678 9.846248 CTTAGATTACCTTATTAAATGCCATGC 57.154 33.333 0.00 0.00 0.00 4.06
3368 3679 7.838079 AGATTACCTTATTAAATGCCATGCA 57.162 32.000 0.00 0.00 44.86 3.96
3378 3689 3.890145 TGCCATGCATGACACAAAC 57.110 47.368 28.31 8.36 31.71 2.93
3379 3690 1.330234 TGCCATGCATGACACAAACT 58.670 45.000 28.31 0.00 31.71 2.66
3380 3691 2.512705 TGCCATGCATGACACAAACTA 58.487 42.857 28.31 0.00 31.71 2.24
3381 3692 2.488937 TGCCATGCATGACACAAACTAG 59.511 45.455 28.31 8.01 31.71 2.57
3382 3693 2.489329 GCCATGCATGACACAAACTAGT 59.511 45.455 28.31 0.00 0.00 2.57
3383 3694 3.689161 GCCATGCATGACACAAACTAGTA 59.311 43.478 28.31 0.00 0.00 1.82
3384 3695 4.201851 GCCATGCATGACACAAACTAGTAG 60.202 45.833 28.31 6.84 0.00 2.57
3385 3696 5.178061 CCATGCATGACACAAACTAGTAGA 58.822 41.667 28.31 0.00 0.00 2.59
3386 3697 5.819379 CCATGCATGACACAAACTAGTAGAT 59.181 40.000 28.31 0.00 0.00 1.98
3387 3698 6.018425 CCATGCATGACACAAACTAGTAGATC 60.018 42.308 28.31 0.00 0.00 2.75
3388 3699 6.036577 TGCATGACACAAACTAGTAGATCA 57.963 37.500 3.59 3.08 0.00 2.92
3389 3700 6.643388 TGCATGACACAAACTAGTAGATCAT 58.357 36.000 3.59 5.15 0.00 2.45
3390 3701 7.105588 TGCATGACACAAACTAGTAGATCATT 58.894 34.615 3.59 0.00 0.00 2.57
3391 3702 7.607607 TGCATGACACAAACTAGTAGATCATTT 59.392 33.333 3.59 0.00 0.00 2.32
3392 3703 9.098355 GCATGACACAAACTAGTAGATCATTTA 57.902 33.333 3.59 0.00 0.00 1.40
3432 3743 9.987726 TCATGATATGATACTACATCCTCTCTT 57.012 33.333 0.00 0.00 33.59 2.85
3435 3746 9.249053 TGATATGATACTACATCCTCTCTTTCC 57.751 37.037 0.00 0.00 0.00 3.13
3436 3747 9.474313 GATATGATACTACATCCTCTCTTTCCT 57.526 37.037 0.00 0.00 0.00 3.36
3437 3748 7.775053 ATGATACTACATCCTCTCTTTCCTC 57.225 40.000 0.00 0.00 0.00 3.71
3438 3749 6.673583 TGATACTACATCCTCTCTTTCCTCA 58.326 40.000 0.00 0.00 0.00 3.86
3439 3750 7.301420 TGATACTACATCCTCTCTTTCCTCAT 58.699 38.462 0.00 0.00 0.00 2.90
3440 3751 7.786943 TGATACTACATCCTCTCTTTCCTCATT 59.213 37.037 0.00 0.00 0.00 2.57
3441 3752 6.882768 ACTACATCCTCTCTTTCCTCATTT 57.117 37.500 0.00 0.00 0.00 2.32
3442 3753 7.979786 ACTACATCCTCTCTTTCCTCATTTA 57.020 36.000 0.00 0.00 0.00 1.40
3443 3754 8.380742 ACTACATCCTCTCTTTCCTCATTTAA 57.619 34.615 0.00 0.00 0.00 1.52
3444 3755 8.997734 ACTACATCCTCTCTTTCCTCATTTAAT 58.002 33.333 0.00 0.00 0.00 1.40
3445 3756 9.844257 CTACATCCTCTCTTTCCTCATTTAATT 57.156 33.333 0.00 0.00 0.00 1.40
3446 3757 8.517062 ACATCCTCTCTTTCCTCATTTAATTG 57.483 34.615 0.00 0.00 0.00 2.32
3447 3758 8.112183 ACATCCTCTCTTTCCTCATTTAATTGT 58.888 33.333 0.00 0.00 0.00 2.71
3448 3759 7.928307 TCCTCTCTTTCCTCATTTAATTGTG 57.072 36.000 0.00 0.00 0.00 3.33
3449 3760 7.461749 TCCTCTCTTTCCTCATTTAATTGTGT 58.538 34.615 0.00 0.00 0.00 3.72
3450 3761 7.391554 TCCTCTCTTTCCTCATTTAATTGTGTG 59.608 37.037 0.00 0.00 0.00 3.82
3451 3762 6.913170 TCTCTTTCCTCATTTAATTGTGTGC 58.087 36.000 0.00 0.00 0.00 4.57
3452 3763 6.024552 TCTTTCCTCATTTAATTGTGTGCC 57.975 37.500 0.00 0.00 0.00 5.01
3453 3764 5.538053 TCTTTCCTCATTTAATTGTGTGCCA 59.462 36.000 0.00 0.00 0.00 4.92
3454 3765 4.782019 TCCTCATTTAATTGTGTGCCAC 57.218 40.909 0.00 0.00 34.56 5.01
3455 3766 4.148079 TCCTCATTTAATTGTGTGCCACA 58.852 39.130 0.00 0.00 43.02 4.17
3456 3767 4.771577 TCCTCATTTAATTGTGTGCCACAT 59.228 37.500 0.00 0.00 44.16 3.21
3457 3768 5.104374 CCTCATTTAATTGTGTGCCACATC 58.896 41.667 0.00 0.00 44.16 3.06
3458 3769 5.336610 CCTCATTTAATTGTGTGCCACATCA 60.337 40.000 0.00 0.00 44.16 3.07
3459 3770 6.283544 TCATTTAATTGTGTGCCACATCAT 57.716 33.333 0.00 0.00 44.16 2.45
3460 3771 6.699366 TCATTTAATTGTGTGCCACATCATT 58.301 32.000 0.00 5.30 44.16 2.57
3461 3772 7.160049 TCATTTAATTGTGTGCCACATCATTT 58.840 30.769 0.00 6.76 44.16 2.32
3462 3773 8.309656 TCATTTAATTGTGTGCCACATCATTTA 58.690 29.630 0.00 5.89 44.16 1.40
3463 3774 8.933807 CATTTAATTGTGTGCCACATCATTTAA 58.066 29.630 0.00 10.80 44.16 1.52
3464 3775 8.893219 TTTAATTGTGTGCCACATCATTTAAA 57.107 26.923 20.69 20.69 44.16 1.52
3465 3776 8.893219 TTAATTGTGTGCCACATCATTTAAAA 57.107 26.923 0.00 0.00 44.16 1.52
3466 3777 7.798596 AATTGTGTGCCACATCATTTAAAAA 57.201 28.000 0.00 0.00 44.16 1.94
3467 3778 6.841443 TTGTGTGCCACATCATTTAAAAAG 57.159 33.333 0.00 0.00 44.16 2.27
3468 3779 5.911752 TGTGTGCCACATCATTTAAAAAGT 58.088 33.333 0.00 0.00 39.62 2.66
3469 3780 5.982516 TGTGTGCCACATCATTTAAAAAGTC 59.017 36.000 0.00 0.00 39.62 3.01
3470 3781 6.183360 TGTGTGCCACATCATTTAAAAAGTCT 60.183 34.615 0.00 0.00 39.62 3.24
3471 3782 7.013750 TGTGTGCCACATCATTTAAAAAGTCTA 59.986 33.333 0.00 0.00 39.62 2.59
3472 3783 7.538678 GTGTGCCACATCATTTAAAAAGTCTAG 59.461 37.037 0.00 0.00 34.08 2.43
3473 3784 7.230510 TGTGCCACATCATTTAAAAAGTCTAGT 59.769 33.333 0.00 0.00 0.00 2.57
3474 3785 8.082242 GTGCCACATCATTTAAAAAGTCTAGTT 58.918 33.333 0.00 0.00 0.00 2.24
3475 3786 8.081633 TGCCACATCATTTAAAAAGTCTAGTTG 58.918 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.421249 AGAAGGATATAGAGGAAAGAGTCATG 57.579 38.462 0.00 0.00 0.00 3.07
17 18 9.581289 CTAAGAAGGATATAGAGGAAAGAGTCA 57.419 37.037 0.00 0.00 0.00 3.41
54 55 8.486210 AGCCATCTGACTAAGAAAACATACATA 58.514 33.333 0.00 0.00 38.79 2.29
55 56 7.281774 CAGCCATCTGACTAAGAAAACATACAT 59.718 37.037 0.00 0.00 42.95 2.29
56 57 6.595326 CAGCCATCTGACTAAGAAAACATACA 59.405 38.462 0.00 0.00 42.95 2.29
57 58 6.457528 GCAGCCATCTGACTAAGAAAACATAC 60.458 42.308 0.00 0.00 42.95 2.39
89 90 5.110598 TCCGAGTTTACGCATAATTAAGCA 58.889 37.500 12.72 0.00 0.00 3.91
216 219 7.001099 AGGTAGTGACAATATATAAACCGGG 57.999 40.000 6.32 0.00 0.00 5.73
251 305 1.064060 GACACCGCTTGGTCAATATGC 59.936 52.381 0.00 0.00 45.05 3.14
380 434 0.461961 CTTCCGGCTTCTAGTGGAGG 59.538 60.000 0.00 0.00 0.00 4.30
496 551 4.908156 CCGAAACCGACTGTATATTCTACG 59.092 45.833 0.00 0.00 0.00 3.51
600 659 8.729805 TGCTTGGAAAATGTTAAGTTTTTCAT 57.270 26.923 17.84 0.00 41.45 2.57
621 686 4.537015 GCTCTGACGTGTAATTTTTGCTT 58.463 39.130 0.00 0.00 0.00 3.91
630 695 1.977188 CACATCGCTCTGACGTGTAA 58.023 50.000 0.00 0.00 36.08 2.41
683 750 1.590147 CCAAGAGGTAAGCCGACGT 59.410 57.895 0.00 0.00 40.50 4.34
717 784 6.131961 AGGAGCAATTGATTAGCCAGTTAAT 58.868 36.000 10.34 0.00 0.00 1.40
718 785 5.509498 AGGAGCAATTGATTAGCCAGTTAA 58.491 37.500 10.34 0.00 0.00 2.01
722 789 4.400251 TCAAAGGAGCAATTGATTAGCCAG 59.600 41.667 10.34 0.00 30.94 4.85
730 797 5.539574 TCTGGAAATTCAAAGGAGCAATTGA 59.460 36.000 10.34 0.00 33.93 2.57
829 900 2.191128 AACGCAGCCTGAAGATTCTT 57.809 45.000 0.00 0.00 0.00 2.52
839 910 2.000447 GAATCTACGAAAACGCAGCCT 59.000 47.619 0.00 0.00 0.00 4.58
847 918 3.541632 GGCAGGATGGAATCTACGAAAA 58.458 45.455 0.00 0.00 44.71 2.29
906 977 5.893824 TGATTGATACTAGAAGTCAGAGCCA 59.106 40.000 0.00 0.00 0.00 4.75
907 978 6.398234 TGATTGATACTAGAAGTCAGAGCC 57.602 41.667 0.00 0.00 0.00 4.70
917 988 4.290093 AGTGTGGCCTGATTGATACTAGA 58.710 43.478 3.32 0.00 0.00 2.43
960 1032 9.100197 TGAGGGTTTTGCATCTACATATCTATA 57.900 33.333 0.00 0.00 0.00 1.31
961 1033 7.977818 TGAGGGTTTTGCATCTACATATCTAT 58.022 34.615 0.00 0.00 0.00 1.98
962 1034 7.373617 TGAGGGTTTTGCATCTACATATCTA 57.626 36.000 0.00 0.00 0.00 1.98
965 1070 8.220559 ACTAATGAGGGTTTTGCATCTACATAT 58.779 33.333 0.00 0.00 0.00 1.78
970 1075 7.775053 AAAACTAATGAGGGTTTTGCATCTA 57.225 32.000 0.00 0.00 41.93 1.98
1047 1156 3.461061 CATCAAGCCTAGCGAAGAATCA 58.539 45.455 0.00 0.00 0.00 2.57
1057 1166 2.408271 TGGAACTGCATCAAGCCTAG 57.592 50.000 0.00 0.00 44.83 3.02
1113 1222 1.214175 TGGTGTTGAGGCAAGAAAGGA 59.786 47.619 0.00 0.00 0.00 3.36
1235 1344 2.674220 CCTCCTCCCTCCTTGCACC 61.674 68.421 0.00 0.00 0.00 5.01
1341 1453 1.204312 CATGAGCAGCGCGATCATG 59.796 57.895 30.46 30.46 42.98 3.07
1470 1582 3.195698 GCCCTGGCGAAGTAAGCG 61.196 66.667 0.00 0.00 35.00 4.68
1473 1585 1.077787 CATGGCCCTGGCGAAGTAA 60.078 57.895 0.00 0.00 43.06 2.24
1839 1951 3.455469 GGCATGCCCAGCTTGGTC 61.455 66.667 27.24 0.00 35.17 4.02
1995 2107 2.125912 AGCAGACGCATCGTGACC 60.126 61.111 0.00 0.00 41.37 4.02
2182 2294 0.683504 AGGACGCCGTTCTCTACCAT 60.684 55.000 0.00 0.00 0.00 3.55
2260 2372 2.979676 CTGCCAGCTGCCGAACAA 60.980 61.111 8.66 0.00 40.16 2.83
2289 2401 1.154035 GCGCAGGAAACCATTTCGG 60.154 57.895 0.30 0.00 40.57 4.30
2458 2570 2.047655 TTAAGCTCGTGCGTGGGG 60.048 61.111 8.17 0.00 45.42 4.96
2524 2638 0.171455 GAGACCGTCTCGCAATGACT 59.829 55.000 12.74 0.00 33.35 3.41
2540 2654 3.616219 GAGCTAACTCTGTGAGAGGAGA 58.384 50.000 5.62 0.00 46.45 3.71
2541 2655 2.687935 GGAGCTAACTCTGTGAGAGGAG 59.312 54.545 5.62 3.63 46.45 3.69
2542 2656 2.041755 TGGAGCTAACTCTGTGAGAGGA 59.958 50.000 5.62 0.00 46.45 3.71
2543 2657 2.451490 TGGAGCTAACTCTGTGAGAGG 58.549 52.381 5.62 0.00 46.45 3.69
2629 2777 5.106515 GCTAGAAAAAGTAGCAAGGAACTGG 60.107 44.000 0.00 0.00 42.21 4.00
2665 2813 2.032924 GTGTGCAGGTTTAGGTGACAAC 59.967 50.000 0.00 0.00 0.00 3.32
2666 2814 2.092646 AGTGTGCAGGTTTAGGTGACAA 60.093 45.455 0.00 0.00 0.00 3.18
2667 2815 1.488812 AGTGTGCAGGTTTAGGTGACA 59.511 47.619 0.00 0.00 0.00 3.58
2672 2820 1.148310 CGTCAGTGTGCAGGTTTAGG 58.852 55.000 0.00 0.00 0.00 2.69
2677 2825 2.280389 CAGCGTCAGTGTGCAGGT 60.280 61.111 11.62 0.00 0.00 4.00
2691 2839 6.747280 TCGAAAATAATTTTGAGCTTAGCAGC 59.253 34.615 7.07 0.00 38.55 5.25
2760 2908 1.071699 GTGTGCAGGTTTAGGAGACCA 59.928 52.381 0.00 0.00 39.71 4.02
2761 2909 1.348036 AGTGTGCAGGTTTAGGAGACC 59.652 52.381 0.00 0.00 37.44 3.85
2765 2913 1.765904 TGTCAGTGTGCAGGTTTAGGA 59.234 47.619 0.00 0.00 0.00 2.94
2820 2968 2.231478 AGACGGTACACCACAGAGAATG 59.769 50.000 0.00 0.00 35.14 2.67
2824 2972 2.404215 CAAAGACGGTACACCACAGAG 58.596 52.381 0.00 0.00 35.14 3.35
2879 3037 8.932963 GCATTTTAAACACAACAGAAAATTTCG 58.067 29.630 0.00 0.00 29.51 3.46
2890 3048 3.494251 CCCTGCTGCATTTTAAACACAAC 59.506 43.478 1.31 0.00 0.00 3.32
2891 3049 3.386078 TCCCTGCTGCATTTTAAACACAA 59.614 39.130 1.31 0.00 0.00 3.33
2920 3078 9.926751 CAGTAGCAAAATATGTACTGATTGAAG 57.073 33.333 2.80 0.00 41.31 3.02
2942 3100 8.511321 GTTGATGTGGATTTGTGAAATACAGTA 58.489 33.333 0.00 0.00 42.19 2.74
2944 3102 6.808212 GGTTGATGTGGATTTGTGAAATACAG 59.192 38.462 0.00 0.00 42.19 2.74
2945 3103 6.569418 CGGTTGATGTGGATTTGTGAAATACA 60.569 38.462 0.00 0.00 39.36 2.29
2946 3104 5.799936 CGGTTGATGTGGATTTGTGAAATAC 59.200 40.000 0.00 0.00 32.09 1.89
2970 3136 4.381566 CACGGCACATTTAAGTTAGTTTGC 59.618 41.667 0.00 0.00 0.00 3.68
2994 3303 3.578688 AGAAACGAATTGGAGCAATTGC 58.421 40.909 23.05 23.05 43.05 3.56
2997 3306 5.452078 TCAAAGAAACGAATTGGAGCAAT 57.548 34.783 0.00 0.00 35.39 3.56
3041 3350 4.586001 AGCCTTGAACACATGTGAAGAAAT 59.414 37.500 31.94 5.65 0.00 2.17
3117 3426 8.328146 AGTTTTTCTTTTCTTTTCTTTATGCGC 58.672 29.630 0.00 0.00 0.00 6.09
3147 3458 8.260818 ACTGAGCTTGCTAAAGAATAGTAATGA 58.739 33.333 10.54 0.00 35.19 2.57
3167 3478 2.337583 TCACGTTAATGAGCACTGAGC 58.662 47.619 0.58 0.00 46.19 4.26
3168 3479 6.237942 CCTTTATCACGTTAATGAGCACTGAG 60.238 42.308 0.58 0.00 30.46 3.35
3170 3481 5.220662 CCCTTTATCACGTTAATGAGCACTG 60.221 44.000 0.58 0.00 30.46 3.66
3171 3482 4.876107 CCCTTTATCACGTTAATGAGCACT 59.124 41.667 0.58 0.00 30.46 4.40
3192 3503 7.040823 CCTTATGAAATGATACTGCTCTTTCCC 60.041 40.741 0.00 0.00 0.00 3.97
3221 3532 7.606839 GCCTTAGTGACTACTTGGTTTTTATCT 59.393 37.037 0.00 0.00 38.36 1.98
3229 3540 2.567615 CCAGCCTTAGTGACTACTTGGT 59.432 50.000 0.00 0.00 38.36 3.67
3230 3541 2.567615 ACCAGCCTTAGTGACTACTTGG 59.432 50.000 0.00 0.95 38.36 3.61
3245 3556 2.789409 ACTCTCCATTACAACCAGCC 57.211 50.000 0.00 0.00 0.00 4.85
3246 3557 5.023533 TGATACTCTCCATTACAACCAGC 57.976 43.478 0.00 0.00 0.00 4.85
3247 3558 9.862371 GTATATGATACTCTCCATTACAACCAG 57.138 37.037 0.00 0.00 0.00 4.00
3248 3559 9.601810 AGTATATGATACTCTCCATTACAACCA 57.398 33.333 0.00 0.00 0.00 3.67
3287 3598 9.026121 GGAGGTAGTATCACACATTAGTATCAT 57.974 37.037 0.00 0.00 0.00 2.45
3288 3599 7.174426 CGGAGGTAGTATCACACATTAGTATCA 59.826 40.741 0.00 0.00 0.00 2.15
3289 3600 7.174599 ACGGAGGTAGTATCACACATTAGTATC 59.825 40.741 0.00 0.00 0.00 2.24
3290 3601 7.002879 ACGGAGGTAGTATCACACATTAGTAT 58.997 38.462 0.00 0.00 0.00 2.12
3291 3602 6.359804 ACGGAGGTAGTATCACACATTAGTA 58.640 40.000 0.00 0.00 0.00 1.82
3292 3603 5.198965 ACGGAGGTAGTATCACACATTAGT 58.801 41.667 0.00 0.00 0.00 2.24
3293 3604 5.769484 ACGGAGGTAGTATCACACATTAG 57.231 43.478 0.00 0.00 0.00 1.73
3294 3605 7.654568 CATTACGGAGGTAGTATCACACATTA 58.345 38.462 0.00 0.00 0.00 1.90
3295 3606 6.513180 CATTACGGAGGTAGTATCACACATT 58.487 40.000 0.00 0.00 0.00 2.71
3296 3607 5.509163 GCATTACGGAGGTAGTATCACACAT 60.509 44.000 0.00 0.00 0.00 3.21
3297 3608 4.202080 GCATTACGGAGGTAGTATCACACA 60.202 45.833 0.00 0.00 0.00 3.72
3298 3609 4.202080 TGCATTACGGAGGTAGTATCACAC 60.202 45.833 0.00 0.00 0.00 3.82
3299 3610 3.955551 TGCATTACGGAGGTAGTATCACA 59.044 43.478 0.00 0.00 0.00 3.58
3300 3611 4.579454 TGCATTACGGAGGTAGTATCAC 57.421 45.455 0.00 0.00 0.00 3.06
3301 3612 7.476540 AATATGCATTACGGAGGTAGTATCA 57.523 36.000 3.54 0.00 0.00 2.15
3302 3613 9.680315 GATAATATGCATTACGGAGGTAGTATC 57.320 37.037 3.54 0.00 29.44 2.24
3303 3614 9.197306 TGATAATATGCATTACGGAGGTAGTAT 57.803 33.333 3.54 0.00 29.44 2.12
3304 3615 8.584063 TGATAATATGCATTACGGAGGTAGTA 57.416 34.615 3.54 0.00 29.44 1.82
3305 3616 7.476540 TGATAATATGCATTACGGAGGTAGT 57.523 36.000 3.54 0.00 29.44 2.73
3308 3619 8.540388 ACTTATGATAATATGCATTACGGAGGT 58.460 33.333 3.54 0.00 29.44 3.85
3309 3620 8.948631 ACTTATGATAATATGCATTACGGAGG 57.051 34.615 3.54 0.00 29.44 4.30
3341 3652 9.846248 GCATGGCATTTAATAAGGTAATCTAAG 57.154 33.333 0.00 0.00 0.00 2.18
3342 3653 9.360901 TGCATGGCATTTAATAAGGTAATCTAA 57.639 29.630 0.00 0.00 31.71 2.10
3343 3654 8.932434 TGCATGGCATTTAATAAGGTAATCTA 57.068 30.769 0.00 0.00 31.71 1.98
3344 3655 7.838079 TGCATGGCATTTAATAAGGTAATCT 57.162 32.000 0.00 0.00 31.71 2.40
3360 3671 1.330234 AGTTTGTGTCATGCATGGCA 58.670 45.000 29.45 29.45 44.86 4.92
3361 3672 2.489329 ACTAGTTTGTGTCATGCATGGC 59.511 45.455 24.40 24.40 0.00 4.40
3362 3673 5.178061 TCTACTAGTTTGTGTCATGCATGG 58.822 41.667 25.97 8.61 0.00 3.66
3363 3674 6.536224 TGATCTACTAGTTTGTGTCATGCATG 59.464 38.462 21.07 21.07 0.00 4.06
3364 3675 6.643388 TGATCTACTAGTTTGTGTCATGCAT 58.357 36.000 0.00 0.00 0.00 3.96
3365 3676 6.036577 TGATCTACTAGTTTGTGTCATGCA 57.963 37.500 0.00 0.00 0.00 3.96
3366 3677 7.545362 AATGATCTACTAGTTTGTGTCATGC 57.455 36.000 0.00 0.00 0.00 4.06
3406 3717 9.987726 AAGAGAGGATGTAGTATCATATCATGA 57.012 33.333 0.00 0.00 44.55 3.07
3409 3720 9.249053 GGAAAGAGAGGATGTAGTATCATATCA 57.751 37.037 0.00 0.00 0.00 2.15
3410 3721 9.474313 AGGAAAGAGAGGATGTAGTATCATATC 57.526 37.037 0.00 0.00 0.00 1.63
3411 3722 9.474313 GAGGAAAGAGAGGATGTAGTATCATAT 57.526 37.037 0.00 0.00 0.00 1.78
3412 3723 8.448816 TGAGGAAAGAGAGGATGTAGTATCATA 58.551 37.037 0.00 0.00 0.00 2.15
3413 3724 7.301420 TGAGGAAAGAGAGGATGTAGTATCAT 58.699 38.462 0.00 0.00 0.00 2.45
3414 3725 6.673583 TGAGGAAAGAGAGGATGTAGTATCA 58.326 40.000 0.00 0.00 0.00 2.15
3415 3726 7.775053 ATGAGGAAAGAGAGGATGTAGTATC 57.225 40.000 0.00 0.00 0.00 2.24
3416 3727 8.560124 AAATGAGGAAAGAGAGGATGTAGTAT 57.440 34.615 0.00 0.00 0.00 2.12
3417 3728 7.979786 AAATGAGGAAAGAGAGGATGTAGTA 57.020 36.000 0.00 0.00 0.00 1.82
3418 3729 6.882768 AAATGAGGAAAGAGAGGATGTAGT 57.117 37.500 0.00 0.00 0.00 2.73
3419 3730 9.844257 AATTAAATGAGGAAAGAGAGGATGTAG 57.156 33.333 0.00 0.00 0.00 2.74
3420 3731 9.618890 CAATTAAATGAGGAAAGAGAGGATGTA 57.381 33.333 0.00 0.00 0.00 2.29
3421 3732 8.112183 ACAATTAAATGAGGAAAGAGAGGATGT 58.888 33.333 0.00 0.00 0.00 3.06
3422 3733 8.404000 CACAATTAAATGAGGAAAGAGAGGATG 58.596 37.037 0.00 0.00 0.00 3.51
3423 3734 8.112183 ACACAATTAAATGAGGAAAGAGAGGAT 58.888 33.333 0.00 0.00 0.00 3.24
3424 3735 7.391554 CACACAATTAAATGAGGAAAGAGAGGA 59.608 37.037 0.00 0.00 0.00 3.71
3425 3736 7.533426 CACACAATTAAATGAGGAAAGAGAGG 58.467 38.462 0.00 0.00 0.00 3.69
3426 3737 7.025963 GCACACAATTAAATGAGGAAAGAGAG 58.974 38.462 0.00 0.00 0.00 3.20
3427 3738 6.071952 GGCACACAATTAAATGAGGAAAGAGA 60.072 38.462 0.00 0.00 0.00 3.10
3428 3739 6.095377 GGCACACAATTAAATGAGGAAAGAG 58.905 40.000 0.00 0.00 0.00 2.85
3429 3740 5.538053 TGGCACACAATTAAATGAGGAAAGA 59.462 36.000 0.00 0.00 0.00 2.52
3430 3741 5.782047 TGGCACACAATTAAATGAGGAAAG 58.218 37.500 0.00 0.00 0.00 2.62
3431 3742 5.798125 TGGCACACAATTAAATGAGGAAA 57.202 34.783 0.00 0.00 0.00 3.13
3447 3758 6.403866 AGACTTTTTAAATGATGTGGCACA 57.596 33.333 24.36 24.36 0.00 4.57
3448 3759 7.593825 ACTAGACTTTTTAAATGATGTGGCAC 58.406 34.615 11.55 11.55 0.00 5.01
3449 3760 7.759489 ACTAGACTTTTTAAATGATGTGGCA 57.241 32.000 0.00 0.00 0.00 4.92
3450 3761 8.452989 CAACTAGACTTTTTAAATGATGTGGC 57.547 34.615 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.