>input_sequence_50411
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--------------------------------------------------------------------ATGATCAATCAC
CTCATGTCAGGAAGAGGCTCCTCGGTCGACATGCATGATTCTTCGCTAGGCTTGATGCAGTTCCATGATCACCACCAGTA
CATGTACGGCAGCAGCACCGGTCCTTTCTTGCCTCAACACCACGGCTTCATCCACCCCGAGGAAGATCGCTGCACCGGCA
AGGTCGTACCGGGGTTGGCTGAGCCGGCCGCGGCCGGGGTAGCCGAGGAGGTGGAGTTCGACGGGTGCAAGGAGGGAGGA
GGCGACGTCGCGGCGGTGGGTCAAGAGAGGCAGCAGCATG---AGGACGCGCCGAAGCCGGGCGAGGAGGAGAAGGAGGC
CCACGGCGTGCGCATGATCGCGCTGCTCATGGAGTGCGCGGTGGCCATGTCGGTGGGCAACCTCGCCGACGCCAACGGGA
CGCTCCTCGAGCTGTCGCAGATGGCGTCCCCCTACGCGCCCTCCTGCGGCGAGCGCCTCGTCGCTTACTTCGCCAGGGCC
ATGGCGGCGCGGCTCATGAGCTCCTGGGTCGGCGTCTGCGCGCCCGTGCACCCGTCCTCCGCGTCCTCCTGGTCCGGCGT
CCACGCCGCGTTCCGGGCCTTCCACAACGTCGCGCCCTTCGCGAGGTGCGCCTACCTGGCCTGCAACCAGGCCATCCTGG
ACGCGTTCCGTGGCAAGCGCCTGGTCCACGTCGTCGACCTCGACGTGGTGCCGGGCGGCGCGCTGCAGTGGCTCCCGCTG
CTCTCCGCGCTGGCGGCCCGGCCGGGCGGCCCTCCCGTGCTCCGCGTGACGGGCTTCGGCGTGTCGGCGTCGGCTCTGCA
CGACGCCGGCACCCAACTCGCCGGGCTGGCGACCAAGCTGGGCATGCCGTTCGAGTTCTACGCCGTCGCGAAGCGGCCTG
GAGAGGTCGTCGACGCCGTGGCCGACCTGCCGAGCAGGAGGCCCGGGGAGGTCGTCGCCGTGCACTGGCTCCGTCACGCC
CTCTACGACGCGGCCGGGGACGACGTGGTCACGATGCGTCTGCTGCGGTGGCTCGAGCCCAAGGTGGTGACGCTGGTGGA
GCAGGAGAGGGGGCCGGCCGGCGGTGACGGCGGCCAATTCCTGGACCGCTTCGTCGCCGCGCTGCACCACTACTCGGCGG
TGTTCGACGCCCTAGGCGCCGCGCGGCCGGCCGACGGCGACGCCAGCAGGCACATGGTAGAGAACGGCGTCCTGGGCAGG
GAGATCGGGAACGTGCTGGCGGTAGCCGGGCCGACGAGGAGCGGCCGGGAGTTGTTCGGCAGCTGGCAGGCGGAGCTCGC
CCGAAATGGTTTCCTGCGCGCCGGCGCCGTTGGACGCGCGCAGGTGCTCGCCGGTGCGTGCCCGGCGGGGCTGGGCTACA
CGGTGGCGGATGACCATGACGGCACGGTGCGGCTGGGGTGGAAGGGCACCCCGCTCTACGCCGTCTCGACGTGGACGTGC
TGCACCACGCCCCACGCACGAGCTTAA-----------------------------------------------------
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>chr1A_1_TraesCS1A01G304000
GCATATTGCATGATGCATGACTCTTTCCTCTATATCCTTCTTAGGTGTGTTCAATATGTATGTTTTCTTAGTCAGATGGC
TGCTGCTTATGCTTAATTATGCGTAAACTCGGAGGCAATTTCAAGTCTAGCTCCTTGTGGAAGAAGC-AGGAGCTGACTG
TAATAATATCATCT-AAAGAAACACAACATTGTGTGCTCGATCGTGGTTTGTTTCTGGCCC-------------------
--------------------------------GGTTTATATATTGTCACTACCTATGCTTTGATGCATATTGACCAAGCG
GTGTCGATACGTTGGCACACAGAAATGACAGTAACAAAGGTAAAGTGATGCAAAATATGTGTGAGAGAGTCAATTTTCTA
TATCAAATCACCAAGATGGCACAGAGATGCAATCCTCCACTAGAAGCCGGAAGTC-TGCATGCAGCACTCCATTGTTGAA
CTGAGATTTGGTGGCCCTGTCCTCTCTTGTTCAGCTGTTCCATCCTTGGGGCTCAGGACTCTGGCTAGCCCGTAG----A
ATATACAGTCGGTTTCGGTTTTCCCTGTGCCGTAGCACATAGATACAAACGTACGTGCACATCACGAGCACGTACAAAAC
ACTCTAAATGTTATATAAAT------GAAAAACTTAACATTTTCCAAGCAAAAATTACACGTCAGAGCGATGTGTTCCAG
TGATCTTCACGTAAATTTTTA--GTGTCTACGTCGGCTTACCTCTTGGTAACATTTGCCTTGGATTAACTGGCTAATCAA
TTGCTCCTTTGAATTTCCAGAGAAACC----TACACTATATTTGAATGTTCTTCATTGTACTGCCGGCCAAGCCAACTGG
CCAATCTCAATGCAGCTCAAAGAATCTTCAGGCTGCGTTTTCGTAGATTCCATCCTGCCGTGTAGCTAAGCTAGCTTCCA
GGTTGACCTAGTAATATGGCTCTGACTTCTAGTATCA-ATCAGGCCACACTTGAATCCTATAGGCTATATATAT------
---------------------------AGATATGTAGATGCAAAACCCTC----ATTAGTTTTGGCTCATGATCAATCAC
CTCATGTCAGGAAGAGGCTCCTCGGTCGACATGCATGATTCTTCGCTAGGCTTGATGCAGTTCCATGATCACCACCAGTA
CATGTACGGCAGCAGCACCGGTCCTTTCTTGCCTCAACACCACGGCTTCATCCACCCCGAGGAAGATCGCTGCACCGGCA
AGGTCGTACCGGGGTTGGCTGAGCCGGCCGCGGCCGGGGTAGCCGAGGAGGTGGAGTTCGACGGGTGCAAGGAGGGAGGA
GGCGACGTCGCGGCGGTGGGTCAAGAGAGGCAGCAGCATG---AGGACGCGCCGAAGCCGGGCGAGGAGGAGAAGGAGGC
CCACGGCGTGCGCATGATCGCGCTGCTCATGGAGTGCGCGGTGGCCATGTCGGTGGGCAACCTCGCCGACGCCAACGGGA
CGCTCCTCGAGCTGTCGCAGATGGCGTCCCCCTACGCGCCCTCCTGCGGCGAGCGCCTCGTCGCTTACTTCGCCAGGGCC
ATGGCGGCGCGGCTCATGAGCTCCTGGGTCGGCGTCTGCGCGCCCGTGCACCCGTCCTCCGCGTCCTCCTGGTCCGGCGT
CCACGCCGCGTTCCGGGCCTTCCACAACGTCGCGCCCTTCGCGAGGTGCGCCTACCTGGCCTGCAACCAGGCCATCCTGG
ACGCGTTCCGTGGCAAGCGCCTGGTCCACGTCGTCGACCTCGACGTGGTGCCGGGCGGCGCGCTGCAGTGGCTCCCGCTG
CTCTCCGCGCTGGCGGCCCGGCCGGGCGGCCCTCCCGTGCTCCGCGTGACGGGCTTCGGCGTGTCGGCGTCGGCTCTGCA
CGACGCCGGCACCCAACTCGCCGGGCTGGCGACCAAGCTGGGCATGCCGTTCGAGTTCTACGCCGTCGCGAAGCGGCCTG
GAGAGGTCGTCGACGCCGTGGCCGACCTGCCGAGCAGGAGGCCCGGGGAGGTCGTCGCCGTGCACTGGCTCCGTCACGCC
CTCTACGACGCGGCCGGGGACGACGTGGTCACGATGCGTCTGCTGCGGTGGCTCGAGCCCAAGGTGGTGACGCTGGTGGA
GCAGGAGAGGGGGCCGGCCGGCGGTGACGGCGGCCAATTCCTGGACCGCTTCGTCGCCGCGCTGCACCACTACTCGGCGG
TGTTCGACGCCCTAGGCGCCGCGCGGCCGGCCGACGGCGACGCCAGCAGGCACATGGTAGAGAACGGCGTCCTGGGCAGG
GAGATCGGGAACGTGCTGGCGGTAGCCGGGCCGACGAGGAGCGGCCGGGAGTTGTTCGGCAGCTGGCAGGCGGAGCTCGC
CCGAAATGGTTTCCTGCGCGCCGGCGCCGTTGGACGCGCGCAGGTGCTCGCCGGTGCGTGCCCGGCGGGGCTGGGCTACA
CGGTGGCGGATGACCATGACGGCACGGTGCGGCTGGGGTGGAAGGGCACCCCGCTCTACGCCGTCTCGACGTGGACGTGC
TGCACCACGCCCCACGCACGAGCTTAACCAAGTTAGCTATCGATCGCGCGCCTGTCGCC--ATGCCAGGTTTAGCTAAGT
CATTGCGAGACGGTCTCCTCTCACAGAGTTAGCTCCATTTGGCATATTGTGACAGTACAGATGAAAAATATTACAATAAT
----------------------------------GGTTGTTTCTGCATGCTAATTTCCAGTTCCTTGCTACTTTTTCTAG
CAAAATCTCATGGTTGTCACCTAAACCTGCACACTGACGCTGCTAAGCTCAAAATTATTTTCGAAAGTGCACAACTTTAG
TGAAATGTTGGTAGTCTAGCAAAATCTTGGTCTCCTAAACCTGCACACTGACACTGATCAGTTCAAAATTATCTTTGAAA
GAGCACACATTCTCTGTGGTGTACCGTCT---------TTGGTTCTATTCGGAG-GAGTTGATGCGAGGATATGGTCGAA
ATTTTCTGTTGTGTTTAAAATGCAGCAGGGAGATTTACTTCAATCAGTACATATTTTGCTACTG--------TATTTCAC
AAATCCACATCAACCGCAAACTAAC-------------------------------------------------------
--------------------------------------------------------------------------------
--------TTAAATGTGCCGTGGCAATTGCTCCAATTCGTTTCTTTGATGTACATAAGATTTGTCTTTTATTTCTTCACA
TGTGTTCAAGGCTGCTAGTTGTAATCAAAGAGGATGTTAAAGATGAACTCATGCTGAAAAGGACTGCGCATAAAGAAAAG
AAAAGAAAAA--CTCAATCATTACTATTCTTTAGCAAGCTCAGTGCTCATTAACGTGATAAAGGGAAAGAGCAGTATCAT
TTCATAAGGTAAGATAAAAACCAAGTAGTCACTAAGGCTGGTTGTAATGGAGAGTATCATATACTAGTATCATGCATATG
ATACTAATGTGTGATACTACCTCCGTAATGCATATTATCATAAGTTAGTATCTTAGATTACCTTATTAAATGCCATGCAT
GACACAAACTAGTAGATCATTTAGTATGATACGGTATCATGATATGATACTACATCCTCTCTTTCCTCATTTAATTGTGT
GCCACATCATTTAAAAAGTCTAGTTG
>chr1B_1
GCATATTGCATGATGGT----TCTTTCCTCTATATCCTTCTTAGGAGTGTTCAA----TATGTTTTCTTAGTCAGATGGC
TGCTGCTTAAC------TATGCGTAAACTCGGAGGCAATTTCAAGTCTAGCTCCTTCTGGAAGAAGCAAGGAGCTGACTG
TAATAATATCATCT-AAAAAAACACCACATTGTGTGCTCGATCGTGGTTTTTGTTTGTTCTCAACCCGGTGCTCTGCCTC
GGTTTATATATCATTTTTTTTTTTGGCGAAATGGTTTATATATTGTTACTACCTATGCTTTGATACATATTGACCAAGCG
GTGTCGATACATTGGCACACAGAAATGACAGTAACAAAGGTAAAGTGATGCAAAATATGTGTGAGAAAGTCCATATTCTA
CATCAAATCACCAAGATGGCACAGAGATGCAATTCTCCACTACTCCTAGAAGCCTATGCATGCAGCACCCCATTGTTGAA
CTGAGATTTGGTGGCCCTGTCCTCTCTTGTTCAGCTGTTCCATCCTTGGGGCTCAGGACTCTGGCTAGCCTGTAGAATAT
G----CAGTCGGTTTCGGTTTTCCCTGTGCCGTAGCACATAGATACAAACGTACGTGCACATCACGAGCACGTACAAAAC
ACTCTAAATGTCACATAGTAAATG----AAATTTTAACTTTTTCCTAACAAAAACTACACGTCAGAGCGATGTGTTCCAG
TTATCTTCACGTAAATTTTCAGTGTGTCTGCGTCGGCTTACCTCTTGGTAACATTTGCCTTGGCCTAATTGGCTA-----
-----CCTTTGATTTTCAAGAGAAACTTGCACTAGCTATATTTGAATGTTCTTCATTGTAGTGCCGGCCAAGCCAACTGA
CCAATCTCAATGCAGCTCACAGAATCTTGTGGCTGCGGTTTCGTAGATTCCATCCTGCCGTGTAGCTA-----GCTTCCA
GGTTGACGTAGTA--------------------------TCAGGCCACACTTGACTCCTATATATATGGATCTGTCAGCT
TCCTT-------TTCTCTCCTGAGCTGAGCTATGCAAAGGCAAAACCCTCATTGATTAGTTTTGGCTGATGATAAATCAC
CTCATGTCAGGTAGAGGCTCCTCAGTCGACATGCACGATTCCTCGTTAGGCTTGATGCAGTTCCATGATCACCACCAGTA
CATGTACGGCAGCAGCACCGGCCCTTTCTTGCCTCAACACCACGGCTTCATCCACCCCGGGGACGATCGCTGCACCGGCA
AGGTCGTTCCTGCGTTGGTCGAGCAAGCCACGGCCGGAGTCGCCGAGGAGGTGGAGTTCGACGCGTGCAAGGAGGGGGGA
GGCGACGTCGCGGTGGTGGGTCAAGAGAGGCAGCAGCATGATCAGGACGCGCCGAAGCCGGGCGAGGAGGAGAAGGAGGC
CCAGGGCGTGCGGATGATCGCGCTGCTCATGGAGTGCGCCGTGGCCATGTCGGTGGGCAACCTCGCCGACGCCAACGGGA
CGCTCCTCGAGCTGTCGCAGATGGCCTCCCCCTACGCGCCGTCCTGCGGCGAGCGCCTCGTGGCCTACTTCGCCAGGGCC
ATGGCGGCGCGGCTCATGAGCTCCTGGGTCGGCGTCTGCGCGCCCGTGCACCCGTCCTCCGCCTCCTCCTGGTCCGGCGT
CCACGCCGCGTTCCGGGCCTTCCACAACGTCGCGCCGTTCGCGAGGTGCGCCTACCTGGCGTGCAACCAGGCCATCCTGG
AGGCGTTCCGCGGCAAGCGCCTGGTCCACGTCGTCGACCTCGACGTCGTGCCGGGCGGCGCGCTGCAGTGGCTCTCGCTG
CTCTCCGCGCTCGCGGCCCGGCCCGGTGGCCCGCCGGTGCTCCGCGTCACGGGCTTCGGCGTCTCGGCGTCGGCGCTGCA
CGACGCCGGCACCCAGCTCGCCGGGCTGGCCACCAAGCTGGGCATGCCGTTCGAGTTCTACGCCGTCGCGAAGCGCCCCG
GAGACGTCGTCGACGCCGTGGCCGACCTGCCGAGCAGGAGGCCCGGCGAGGTCGTCGCCGTGCACTGGCTCCGTCACGCC
CTGTACGACGCGGCCGGGGACGACGTTGTCACGATGCGTCTGGTGCGGTGGCTCGAGCCTAAGGTGGTCACGCTGGTGGA
GCAGGAGAGGGGGCCTGCCGGCGGTGACGGCGGCCAGTTCCTGGACCGCTTCGTCGCCGCGCTGCACCACTACTCGGCGG
TGTTCGACGCCCTAGGCGCCGCGCGGCCGGCCGACGGCGACGCCAGCAGGCACCTGGTAGAGAACGGCGTCCTGGGCAGG
GAAATCGGGAACGTGCTGGCGGTTGCCGGGCCGACGAGGAGCGGGCGGGAGATGTTCGGAAGCTGGCAGGTGGAGCTCGC
ACGAAATGGTTTCCTGCGCGCCGGCGCCGTTGGGCGCGCGCAGGTGCTCGCCGGTGCGTGCCCGGCGGGGCTGGGCTACA
CGGTGGCGGATGACCATGACGGCACGGTGCGGCTGGGGTGGAAGGGCACCCCACTCTACGCCGTCTCGACGTGGACGTGC
TGCACCACGGCCCATGCACGAGCTTAACCAAGTTGGTG------CGCGCGCCTGTCACCATATGCCAGGTTTAGCTACGT
CATTGCGAGACGGG---CTCTCACAGATTTAGCTCCATTTGGCATATCGTGGCAGTAGAGATGAAAAATATTACAATAAT
----------------------------------TGTTGTTTCTGCATGCTAATTTTCAGTTCCTTGCTACTTTTTCTAC
CAAAATCTG----------------------CACTGACACTTCTAAGCTCAAAATTATCTTTGAAAGTGCACAACTTTAG
TGAAATGTTGGTACTCTAGCAAAATCTCAGTCACCTAAACCTGCACACTAACACTGCTCAGTTCAAAATTATCTAT-AAA
GGGCACAAATTATCTGTGGAGTACCATCT---------TTGGTTCTATTTGGAG-GAGTTGATGTGAGGAT---------
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>chr1D_30
-----------------------------CTATATCTTTCTTAGGCGTGTTCAA----TATGTTTTCTTAGTCAGATGGC
TGCTGCTTAAGCTTAATTATGCGTAAACTCGGAGGCAATTTCAAGTCCAGCTCCTTGTGGAAGAAGC-AGGAGCTGACTG
TAATAATATTATCTAAAAAAAACACAACATTGTGTGCTCGATCGTGGTTTGTTTCTGGTCC-------------------
--------------------------------GGTTTATATATTTTTACTACCTATGCCTTGATACATATTGACCCAGCG
GTGTCGATACGTTGGCACATAGAAATGACAGTAACAAAGGTAAAGTGATGCAAAATATGTGTGAGAGAGTCAATTTTCTA
TATCAAATCACCAAGATGGCACAGAGATGGAATTCTCCACTAGAAGCCGGAAGTC-TGCATGCAGCACTCCATTGTTGAA
CTGAGATTTGGTGGCCCTGTCCTCTCTTGTTCAGCTGTTTCATCCTTGGGGCTCAGGACTCTGGCTAGCCTGTAGAATTA
ATATACAGTCGGTTTCGGTTTTCCCTGTGCCGTAGCACATAGATACAAACGTACGTTCACATCACGAGCACGTACAAAAC
ACTCTAAACGTTATATAAGTGATGAGGAAAAACATAACATTTTCCTAGCAAAAACTACACGTCAGAGCGATGTGTTCCAG
TGATCTTCACGTGAATTTTTA--GTGTCTGCGTCGGCTTACCTCTTGGTAACATTTGCCTTGGCCTAATTGGCTAACCAA
TTGCTCCTTTGATTTTCCAGAGAAACTTAATTACACTATATTTGAATGTTCTTCATTGTAGTGCCGGCCAAGCCAACTGG
CCAATCTCAATGCAGCTCACAGAATCTTCTGGCTGCGGTTTCGTAGATTCCATCCTGCCGTGTAGCTAAGCTAGCTTCCA
GGTTGACCTAGTAATAATGCTCTGACTCCTAGTATCATATCAGGCCATGCTTGACTCCTATATATATACATCTCTCATCT
CTGTACATACACTTCTCTCCTGAGCTAAGCTATGCAAAGGTAAAAACCTCATTGATTAGTTTTGGCTCATGATCAATCAC
CTCATGTCAGGAAGAGGCTCCTCGGTCGACATGCACGATTCTTCCTTAGGCTTGATGCAGTTCCATGATCACCACCAGTA
CATGTACGGCAGTAGCACCGGCCCTTTCTTGCCTCAACACCACGGCTTTATCCACCCCGAGGACGATCGCTGCCCCGGCA
AGGTCGTGACGGCGTTGGTCGAGCAAGCCACGGCCGGGGTAGCTGAGGAGGTGGAGTTCGGTGCCTGCAAGGAGGGAGAA
---GACGTCGTGGCGGTCGGACAAGAGAGGCAGCAG---G---AGGACGCGCCGAAGCCGGGC---GAGGAGAAGGAGGC
CCAGGGCGTGCGGATGATCGCGCTCCTCATGGAGTGCGCGGTGGCCATGTCGGTGGGCAACCTCGCCGACGCCAACGGGA
CGCTCCTCGAGCTGTCCCAGATGGCGTCCCCCTACGCGCCGTCCTGCGGCGAGCGCCTCGTGGCCTACTTCGCCAGGGCC
ATGGCGGCGCGGCTGATGAGCTCCTGGGTCGGCGTCTGCGCGCCCGTGCACCCGTCCTCCGCCTCCTCCTGGTCCGGCGT
CCACGCCGCCTTCCGGGCCTTCCACAGCGTCGCGCCGTTCGCGAGGTGCGCCTACCTGGCCTGTAACCAGGCCATCCTGG
GGGCGTTCCACGGCAAGCGCCTGGTCCACGTCGTCGACCTCGACGTCGTGCCGGGCGGCGCGCTGCAGTGGCTCCCGCTG
CTCTCCGCGCTGGCGGCCCGGCCCGGTGGCCCGCCGGTGCTCCGCGTGACGGGCTTCGGCGTCTCGGCTTCGGCGCTGCA
CGACGCCGGCACCCAGCTCGCCGGGCTGGCCACCAAGCTGGGCATCCCGTTCGAGTTCTACGCCGTCGCGAAGCGGCCCG
GAGACGTCGTCGACGCCGTGGCCGACCTGCCGAGCAGGAGGCCCGGGGAGGTCGTCGCCGTGCACTGGCTCCGTCACGCC
CTCTACGACGCGGCCGGGGACGACGTTGTCACGATGCGTCTCGTGCGGTGGCTCCAGCCCAAGGTGGTGACGCTGGTGGA
GCAGGAGAGGGGGCCGACCGGCGGTGACGGCGGCCAATTCCTGGACCGCTTCGTCGCCGCGCTGCACCACTACTCCGCGG
TGTTCGACGCCCTAGGCGCCGCGCGGCCGGCCGACGGCGACGCCAGCAGGCACCTGGTAGAGAACGGCGTCCTGGGCAGG
GAGATCGGGAACGTGCTGGCGGTTGCCGGGCCGACGAGGAGCGGCAGGGAGATGTTCGGCAGCTGGCAGGCGGAGCTCGC
ACGAAATGGTTTCCTGCGCGCCGGCGCCGGTGGGCGCGCGCAGGTGCTGGCCGGTGCGTGCCCGGCGGGGCTGGGCTACA
CGGTGGCGGATGACCATGACGGCACGGTGCGGCTGGGGTGGAAGGGCACCCCACTCTACGCCGTCTCGACGTGGACGTGC
TGCACCACGGCCCACGCACGAGCTTAACCAAGTTAGCTATCGATCGCGCGCCTGTCGCC--ATGCCAGGTTTAGCTAGGT
CATTGCGAGACGGG---CTCTCATAGAGTTAGCTCCACTTGGCAT--TGCGGCAGTACAAACGAAAATATTAATAATGGT
TCTTTCTGCATG------TTTTTTTTTTTACAGAGGTTGTTTCTGCATGCTAATTTTCAGTTCCTTGCTATTTTTTCTAG
CAAAATATCA-----GTCATCTAACCCTGCACGCTGGCACTGATGAGT---------TCTCTGAAAGTGCACAACTTTAG
TGAAATATTGGTAGTCTAGCAAAATCTCAGCCACCTAAACCTGCACACTGACACTGCTCAGTTCAAAATTATCTTTCAAA
GAGCACAAATTATCTGTTGTGTACCGGATGTTTGTTTATTGGTTATATTCGGCGTGAGTTGATGCGAGGATATGGTTGAA
ATTTTCTAGTGTGTTTAAAATGCAGCAGGGTGATTTATTTCAATCAGTACATATTTTGCCAGCTGACGGTGTTATTTCAC
AAATCCACATCAACCACAAACTTACCTTAGGCTTTGTTCGGTTAATCCTCTCCCCAAGAGGATTGGAGGGGATTGGCAAT
GATTGGTTCGTATTTTAACTTATAAGAGGTTTAAATCCCCCTAAAACCCCTTCAATCCACTCGGATTCACACGCAACCGA
ACAAGGCCTTAAATGTGCCGTGACACTTGCTCCAATTCGTTTCTTTGATGTACACAAGATTTGTCTTTTGTTTCTTCACA
TGTGTTCAAGGCTGCTAATTGTAATCAAAGAGGATGTTAAGGAGAAACTCATGCTGA-----------------------
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>chr1D_1475
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-----------------------------------------------------------------TACTTCGTCAGGGCC
ATGGCGGCGCGGCTGATGAGCTCCTGGGTCGGCGTCTGCGCGCCCGTGCACCCGTCCTCCGCGTCCTCCTGGTCCGGCGT
CCACGCCGCGTTCCGGGCCTTGCACAACGTTGCGCCGTTCGCGAGGTGCGCCTACCTGGCGTGCAACCAGGCCATCCTGG
AGGCCTTCCGCGGCAAGCGCCTGGTCCACGTCGTCGACCTCGACGTTGTGCCGGGCGGCGCGCTGTAGTGGCTCTCGCTG
CACTCCGCGCTGGCGGCCCGGCCCGGTGGCCCACCGGTGCTCCGCGTCACGGGCTTCGGCGTGTCCGCGTCGGCGCTGCA
CGACGCCGGCACCCAGCTTGCCGGGCTGGCCACCAAGCTGGGCATGCCGTTCGAGTTCTACGCCGTCGCGAAGCGGCCTG
GAGACGTCGTCGACGCCGTGGCCGACCTGCCGAGCAGGAGGCCCGGGGAGGTCGTCGCCGTGCACTGGCTCCGCCATGCC
CTCTACGACGCCGCCGGAGATGACGTTGTCACGATGCGTCTGCTGCGGTGGCTCGAGCCCAAGGTGGTGACGCTGGTGGA
ACAGGAGAGGGGGCCGGCCGGCGGTGACGGCGGCCAATTCCTGGACCGCCTCGTCGCCGCGCTGCACCACTACTCCGCGG
TGTTCGACGCCCTAGGCGCCGCGCGGCCGGCCGACGGCGACGCCAGCAGGCACCTGGTAGAGAACGGCGTCCTGGGCAGG
GAGATCGGGAACGTGCTGGCGGTTGCCGGGCCGACGAGGAGCGGCAGGGAGATGTTCGGCAGCTGGCAGGCGGAGCTCGC
ACGAAATGGTTTCCTGCGCGCCGGCGCCGGTGGGCGCGCGCAGGTGCTGGCCGGTGCGTGCCCGGCGGGGCTGGGCTACA
CGGTGGCGGATGACCATGACGGCACGGTGCGGCTGGGGTGGAAGGGCACCCCACTCTACGCCGTCTCGACGTGGACGTGC
TGCACCACGGCCCACGCACGAGCTTAACCAAGTTAGCTATCGATCGCGCGCCTGTCGCC--ATGCCAGGTTTAGCTAGGT
CATTGCGAGACGGG---CTCTCACAGAGTTAGCTCCACTTGGCAT--TGCGGCAGTACAAACGAAAATATTAATAATGGT
TCTTTCTGCATGCTTTTTTTTTTTTTTTGACAGAGGTTGTTTCTGCATGCTAATTTTCAGTTCCTTGCTATTTTTTCTAG
CAAAATATCA-----GTCATCTAACCCTGCACGCTGACACTGATGAGT---------TCTCTGAAAGTGCACAACTTTAG
TGAAATATTGGTAGTCTAGCAAAATCTCAGCCACCTAAACCTGCACACTGACACTGCTCAGTTCAAAATTATCTTTCAAA
GAGCACAAATTATCTGTTGTGTACCGGATTTTTGTTTATTGGTTATATTCGGCGTGAGTTGATGCGAGGATATGGTTGAA
ATTTTCTAGTGTGTTTAAAATGCAGCAGGGTGATTTATTTCAATCAGTACATATTTTGCCAGCTGACGGTGCTATTTCAC
AAATCCACATCAACCACAAACTTACCTTAGGCTTTGTTCGGTTAATCCTCTCCCCAAGAGGATTGGAGGGGATTGGCAAT
GATTGGTTCGTATTTTAACTTATAAGAGGTTTAAATCCCCCTAAAACCCCTTCAATCCACTCGGATTCACACGCAACCGA
ACAAGGCCTTAAATGTGCCGTGACACTTGCTCCAATTCGTTTCTTTGATGTACACAAGATTTGTCTTTTGTTTCTTCACA
TGTGTTCAAGGCTGCTAATTGTAATCAAAGAGGATGTTAAGGAGGAACTCATGCTGAAAAGGACTCCGCATAAAGAAAAG
AAAAAAAAAATCCTCAACCATTACTATTCTTTAGCAAATTTGGTGCTCATTAACGTGATAAAAGGAAAGAGCAGT--CAT
TTCATAAGGTACGATAAAAG-CAAGTAGTCACTAA---------------------------------------------
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>SNPs
---------------SSSSSS------------------------S--------SSSS----------------------
---------S----------------------------------------------------------------------
------------------S---------------------------------------S---------------------
----------------------------------------------S-----------------S---------------
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---------------------------------S----------------------------------------------
----------------------------------------------------------------------S---------
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------------------S--------------------------S--------S-------------------------
-----------------------------S---------------------------------SS---S-------S---
------------S-------------S---------------------------------S-------------------
-------------------S---------S-------S------------------------------------------
----------------SS---------S--------------------------S-------SSSSSSSSSSSS------
-----------------------------S----S-S-S-----------------------------------------
-----------------------------------S---------S----------------------------------
---------------------S-----------------------------------------S----------------
-------S----S-----SS----SS---S---------------------------------S----------------
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---S--------S-------------------------------------------------------------------
----------------------------------------S--------------------S--S---------------
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------------------------------------S-------------------------------------------
-S--------S-----------------------------------S---------------------------------
-----------------------S--S-----S--S--------------------------------------S-----
---------------S--------------S-------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
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-----------------------------------------------------S--------------------------
-----------------------S---------------------------S----------------------------
S--------------------------------S----------------------------------------------
----------------------------------------------------S---------------------------
---------S-------------------------------------------------------------------S--
-------------SSSS----------------------------------S----------------------------
--------------------------------------------------------S-----------------------
----------SSSSS----S----S-------------S-------------------S--S------------------
---------------------------SS---S-----------------------S-------------------S---
-------S---S----------------------------------------------------------------S---
-------SS---------------------S------S---------------------S-SSS----------------
---------------S------S---------------------------------------------------------
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----------------------S--S----------------------------S--------------S----------
-----------------S----------------------S--S---------------------S--------------
----S------------S-------------------SS-SS--------------------S------------SS---
-----------S-------SS--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_551
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----------------------------------------------------TCAGGACTCTGGCTAGCCC---------
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>reverse_2294
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-----------------------------------------------------ATGGTAGAGAACGGCGTCCT-------
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>forward_1156
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-----------------CTCCTCGGTCGACATGCAT--------------------------------------------
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>reverse_2638
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-----------------------------------------------------------------------------AGT
CATTGCGAGACGGTCTC---------------------------------------------------------------
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