Multiple sequence alignment - TraesCS1A01G297400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G297400 chr1A 100.000 2344 0 0 1 2344 492270797 492273140 0.000000e+00 4329.0
1 TraesCS1A01G297400 chr1A 100.000 536 0 0 2735 3270 492273531 492274066 0.000000e+00 990.0
2 TraesCS1A01G297400 chr1A 88.934 244 24 1 942 1185 492234454 492234694 6.860000e-77 298.0
3 TraesCS1A01G297400 chr1A 78.173 197 20 18 516 703 492233959 492234141 1.600000e-18 104.0
4 TraesCS1A01G297400 chr1D 92.902 2381 103 21 1 2344 392950773 392948422 0.000000e+00 3400.0
5 TraesCS1A01G297400 chr1D 87.774 319 14 10 644 948 392953743 392953436 1.870000e-92 350.0
6 TraesCS1A01G297400 chr1D 89.450 218 14 6 969 1185 393337008 393336799 1.930000e-67 267.0
7 TraesCS1A01G297400 chr1D 94.495 109 5 1 496 603 392962072 392961964 2.020000e-37 167.0
8 TraesCS1A01G297400 chr1D 86.047 129 18 0 1158 1286 467382307 467382179 4.400000e-29 139.0
9 TraesCS1A01G297400 chr1D 91.489 94 6 2 2735 2828 392948382 392948291 9.520000e-26 128.0
10 TraesCS1A01G297400 chr1D 77.689 251 25 16 155 385 392962381 392962142 1.230000e-24 124.0
11 TraesCS1A01G297400 chr1B 89.107 1781 109 33 603 2344 529704738 529706472 0.000000e+00 2135.0
12 TraesCS1A01G297400 chr1B 91.718 326 20 4 252 571 529704419 529704743 2.310000e-121 446.0
13 TraesCS1A01G297400 chr1B 86.425 221 30 0 1352 1572 449991027 449991247 3.260000e-60 243.0
14 TraesCS1A01G297400 chr4A 85.032 628 60 17 1013 1638 17483876 17483281 2.790000e-170 608.0
15 TraesCS1A01G297400 chr4A 88.824 170 16 2 1724 1890 17483133 17482964 4.280000e-49 206.0
16 TraesCS1A01G297400 chr4B 84.469 631 64 15 1010 1638 561589167 561589765 2.810000e-165 592.0
17 TraesCS1A01G297400 chr4B 83.668 349 53 4 1961 2305 561591936 561592284 3.150000e-85 326.0
18 TraesCS1A01G297400 chr4B 90.323 155 15 0 1736 1890 561589963 561590117 1.540000e-48 204.0
19 TraesCS1A01G297400 chr4B 90.909 99 8 1 1305 1403 23323439 23323536 7.360000e-27 132.0
20 TraesCS1A01G297400 chr4D 84.311 631 65 16 1010 1638 449201674 449202272 1.310000e-163 586.0
21 TraesCS1A01G297400 chr4D 90.323 155 15 0 1736 1890 449202429 449202583 1.540000e-48 204.0
22 TraesCS1A01G297400 chr7B 92.462 199 15 0 1352 1550 51909961 51910159 5.340000e-73 285.0
23 TraesCS1A01G297400 chr2B 86.036 222 17 5 1352 1573 136166192 136165985 3.280000e-55 226.0
24 TraesCS1A01G297400 chr6B 86.709 158 18 1 1047 1204 678599027 678599181 4.340000e-39 172.0
25 TraesCS1A01G297400 chr5A 73.352 349 79 13 2806 3148 487648896 487649236 2.060000e-22 117.0
26 TraesCS1A01G297400 chr5B 83.333 102 16 1 3073 3174 379818753 379818653 3.470000e-15 93.5
27 TraesCS1A01G297400 chrUn 90.476 63 6 0 3203 3265 31196924 31196986 2.090000e-12 84.2
28 TraesCS1A01G297400 chr3B 80.392 102 20 0 3073 3174 453989532 453989431 9.730000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G297400 chr1A 492270797 492274066 3269 False 2659.500000 4329 100.000000 1 3270 2 chr1A.!!$F2 3269
1 TraesCS1A01G297400 chr1A 492233959 492234694 735 False 201.000000 298 83.553500 516 1185 2 chr1A.!!$F1 669
2 TraesCS1A01G297400 chr1D 392948291 392953743 5452 True 1292.666667 3400 90.721667 1 2828 3 chr1D.!!$R3 2827
3 TraesCS1A01G297400 chr1B 529704419 529706472 2053 False 1290.500000 2135 90.412500 252 2344 2 chr1B.!!$F2 2092
4 TraesCS1A01G297400 chr4A 17482964 17483876 912 True 407.000000 608 86.928000 1013 1890 2 chr4A.!!$R1 877
5 TraesCS1A01G297400 chr4B 561589167 561592284 3117 False 374.000000 592 86.153333 1010 2305 3 chr4B.!!$F2 1295
6 TraesCS1A01G297400 chr4D 449201674 449202583 909 False 395.000000 586 87.317000 1010 1890 2 chr4D.!!$F1 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 3626 0.179124 GGCGAGAGATCGAAAGTGCT 60.179 55.000 1.17 0.00 34.64 4.40 F
1700 4867 1.072089 GTTGCATCGATCGACGCTTAC 60.072 52.381 32.60 25.65 42.26 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 7124 0.974010 TAGTTGAGGATTCCGGCGGT 60.974 55.0 27.32 7.44 0.00 5.68 R
2832 7846 0.031449 CGGACGTTTGTGGGCAATTT 59.969 50.0 0.00 0.00 34.18 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 2993 4.124238 TCCAGTTACTTGGTCGAACAAAG 58.876 43.478 18.03 13.36 39.35 2.77
28 2999 0.394488 TTGGTCGAACAAAGGCACCA 60.394 50.000 14.82 0.00 35.26 4.17
40 3011 1.981256 AGGCACCACGAGAATTTGTT 58.019 45.000 0.00 0.00 0.00 2.83
42 3013 2.693074 AGGCACCACGAGAATTTGTTTT 59.307 40.909 0.00 0.00 0.00 2.43
74 3045 8.880991 TCCTAGATAGGTTACAATCCTATGAC 57.119 38.462 8.89 0.00 45.06 3.06
83 3054 8.598041 AGGTTACAATCCTATGACCAGATTATC 58.402 37.037 0.00 0.00 33.04 1.75
87 3058 7.684529 ACAATCCTATGACCAGATTATCCTTC 58.315 38.462 0.00 0.00 0.00 3.46
92 3063 6.438741 CCTATGACCAGATTATCCTTCTGCTA 59.561 42.308 0.00 0.00 39.42 3.49
153 3124 2.177950 GCACTCTTGCCCATGTGAG 58.822 57.895 0.00 0.00 43.66 3.51
154 3125 0.321919 GCACTCTTGCCCATGTGAGA 60.322 55.000 0.00 0.00 43.66 3.27
155 3126 1.681166 GCACTCTTGCCCATGTGAGAT 60.681 52.381 0.00 0.00 43.66 2.75
156 3127 2.014857 CACTCTTGCCCATGTGAGATG 58.985 52.381 0.00 0.00 32.72 2.90
157 3128 1.632409 ACTCTTGCCCATGTGAGATGT 59.368 47.619 0.00 0.00 0.00 3.06
158 3129 2.014857 CTCTTGCCCATGTGAGATGTG 58.985 52.381 0.00 0.00 0.00 3.21
159 3130 1.629861 TCTTGCCCATGTGAGATGTGA 59.370 47.619 0.00 0.00 0.00 3.58
167 3138 2.094659 GTGAGATGTGACGGCACCG 61.095 63.158 21.02 7.71 44.51 4.94
185 3156 2.125552 GCGGGAAAATTGCAGCCC 60.126 61.111 0.00 0.00 34.00 5.19
189 3160 1.197812 GGGAAAATTGCAGCCCATCT 58.802 50.000 0.00 0.00 40.39 2.90
190 3161 1.556451 GGGAAAATTGCAGCCCATCTT 59.444 47.619 0.00 0.00 40.39 2.40
213 3184 3.912496 TGGATCTCCAATGTAGTGTGG 57.088 47.619 0.00 0.00 44.35 4.17
234 3205 0.528684 GTGAGCCCGAGAAATCCGAG 60.529 60.000 0.00 0.00 0.00 4.63
250 3221 2.552743 TCCGAGGCGTGAATAGACTATG 59.447 50.000 0.00 0.00 0.00 2.23
255 3226 3.256136 AGGCGTGAATAGACTATGCTACC 59.744 47.826 2.04 1.37 0.00 3.18
256 3227 3.256136 GGCGTGAATAGACTATGCTACCT 59.744 47.826 2.04 0.00 0.00 3.08
257 3228 4.230657 GCGTGAATAGACTATGCTACCTG 58.769 47.826 2.04 0.00 0.00 4.00
363 3342 5.581605 TCTTTTGTTTTCTGCACAGATCAC 58.418 37.500 0.31 2.42 37.29 3.06
394 3373 4.508662 AGAAAGAGTATTACTGCACCAGC 58.491 43.478 0.00 0.00 42.57 4.85
420 3399 2.825836 CGGCCTTGACCAGATGCC 60.826 66.667 0.00 0.00 38.74 4.40
434 3413 2.094390 CAGATGCCCAAGTTGACATTGG 60.094 50.000 3.87 1.38 45.68 3.16
488 3468 3.636153 ACTCTAGGGAAGCCATTTGTC 57.364 47.619 0.00 0.00 0.00 3.18
523 3508 5.363373 GCTCCAAAGCCATCCAATCATGG 62.363 52.174 0.00 0.00 44.64 3.66
557 3543 2.888051 GAAGCGGCGGAAGAGAGC 60.888 66.667 9.78 0.00 0.00 4.09
635 3621 3.190079 CAGAAATGGCGAGAGATCGAAA 58.810 45.455 1.17 0.00 34.64 3.46
637 3623 2.969628 AATGGCGAGAGATCGAAAGT 57.030 45.000 1.17 0.00 34.64 2.66
638 3624 2.215907 ATGGCGAGAGATCGAAAGTG 57.784 50.000 1.17 0.00 34.64 3.16
639 3625 0.458543 TGGCGAGAGATCGAAAGTGC 60.459 55.000 1.17 0.00 34.64 4.40
640 3626 0.179124 GGCGAGAGATCGAAAGTGCT 60.179 55.000 1.17 0.00 34.64 4.40
641 3627 1.634702 GCGAGAGATCGAAAGTGCTT 58.365 50.000 1.17 0.00 34.64 3.91
743 3749 7.012421 CCACATGCGTATATACTGCTAGATAGA 59.988 40.741 21.71 7.96 0.00 1.98
744 3750 8.563732 CACATGCGTATATACTGCTAGATAGAT 58.436 37.037 21.71 9.33 0.00 1.98
745 3751 9.780186 ACATGCGTATATACTGCTAGATAGATA 57.220 33.333 21.71 6.96 0.00 1.98
916 3930 6.212791 TCTCATTTTACTAGGTACACTGGCTT 59.787 38.462 0.00 0.00 0.00 4.35
1052 4162 2.164865 CTGTGCCTGCTCTTCCTCGT 62.165 60.000 0.00 0.00 0.00 4.18
1652 4819 1.171308 CCGATCCATGCATCCATTCC 58.829 55.000 0.00 0.00 0.00 3.01
1654 4821 2.443416 CGATCCATGCATCCATTCCAT 58.557 47.619 0.00 0.00 0.00 3.41
1677 4844 4.895224 TCATACTACCGCAGTGACTAAG 57.105 45.455 0.00 0.00 38.24 2.18
1700 4867 1.072089 GTTGCATCGATCGACGCTTAC 60.072 52.381 32.60 25.65 42.26 2.34
1708 4875 3.120234 TCGATCGACGCTTACTGTTTGTA 60.120 43.478 15.15 0.00 42.26 2.41
1856 5118 5.062809 GCTAACTTTCCATCAGTTCTTCGAG 59.937 44.000 0.00 0.00 35.95 4.04
1895 5157 1.540707 TGCATCGTTCAGGTACGTACA 59.459 47.619 26.02 4.03 42.01 2.90
1969 6979 3.011566 TCAAACTTCTGACAGGCCAAA 57.988 42.857 5.01 0.00 0.00 3.28
2790 7804 5.505780 TCAAACTATCAAACTACATGGGGG 58.494 41.667 0.00 0.00 0.00 5.40
2801 7815 1.208165 ACATGGGGGTCTGGTCTTCC 61.208 60.000 0.00 0.00 0.00 3.46
2804 7818 1.541620 GGGGGTCTGGTCTTCCCTT 60.542 63.158 0.00 0.00 40.88 3.95
2810 7824 2.502130 GGTCTGGTCTTCCCTTCTTAGG 59.498 54.545 0.00 0.00 41.60 2.69
2822 7836 4.096732 CCTTCTTAGGGCATTTTGAACG 57.903 45.455 0.00 0.00 37.94 3.95
2823 7837 3.501950 CTTCTTAGGGCATTTTGAACGC 58.498 45.455 0.00 0.00 0.00 4.84
2824 7838 2.790433 TCTTAGGGCATTTTGAACGCT 58.210 42.857 0.00 0.00 0.00 5.07
2825 7839 2.487762 TCTTAGGGCATTTTGAACGCTG 59.512 45.455 0.00 0.00 0.00 5.18
2826 7840 2.192664 TAGGGCATTTTGAACGCTGA 57.807 45.000 0.00 0.00 0.00 4.26
2827 7841 0.598065 AGGGCATTTTGAACGCTGAC 59.402 50.000 0.00 0.00 0.00 3.51
2828 7842 0.388520 GGGCATTTTGAACGCTGACC 60.389 55.000 0.00 0.00 0.00 4.02
2829 7843 0.388520 GGCATTTTGAACGCTGACCC 60.389 55.000 0.00 0.00 0.00 4.46
2830 7844 0.598065 GCATTTTGAACGCTGACCCT 59.402 50.000 0.00 0.00 0.00 4.34
2831 7845 1.401539 GCATTTTGAACGCTGACCCTC 60.402 52.381 0.00 0.00 0.00 4.30
2832 7846 1.879380 CATTTTGAACGCTGACCCTCA 59.121 47.619 0.00 0.00 0.00 3.86
2833 7847 2.045561 TTTTGAACGCTGACCCTCAA 57.954 45.000 0.00 0.00 0.00 3.02
2834 7848 2.045561 TTTGAACGCTGACCCTCAAA 57.954 45.000 0.00 0.00 35.88 2.69
2835 7849 2.270352 TTGAACGCTGACCCTCAAAT 57.730 45.000 0.00 0.00 0.00 2.32
2836 7850 2.270352 TGAACGCTGACCCTCAAATT 57.730 45.000 0.00 0.00 0.00 1.82
2837 7851 1.879380 TGAACGCTGACCCTCAAATTG 59.121 47.619 0.00 0.00 0.00 2.32
2838 7852 0.598065 AACGCTGACCCTCAAATTGC 59.402 50.000 0.00 0.00 0.00 3.56
2839 7853 1.244019 ACGCTGACCCTCAAATTGCC 61.244 55.000 0.00 0.00 0.00 4.52
2840 7854 1.893062 GCTGACCCTCAAATTGCCC 59.107 57.895 0.00 0.00 0.00 5.36
2841 7855 0.899717 GCTGACCCTCAAATTGCCCA 60.900 55.000 0.00 0.00 0.00 5.36
2842 7856 0.890683 CTGACCCTCAAATTGCCCAC 59.109 55.000 0.00 0.00 0.00 4.61
2843 7857 0.187117 TGACCCTCAAATTGCCCACA 59.813 50.000 0.00 0.00 0.00 4.17
2844 7858 1.337118 GACCCTCAAATTGCCCACAA 58.663 50.000 0.00 0.00 40.87 3.33
2845 7859 1.691434 GACCCTCAAATTGCCCACAAA 59.309 47.619 0.00 0.00 39.77 2.83
2846 7860 1.416030 ACCCTCAAATTGCCCACAAAC 59.584 47.619 0.00 0.00 39.77 2.93
2847 7861 1.605202 CCCTCAAATTGCCCACAAACG 60.605 52.381 0.00 0.00 39.77 3.60
2848 7862 1.068434 CCTCAAATTGCCCACAAACGT 59.932 47.619 0.00 0.00 39.77 3.99
2849 7863 2.393764 CTCAAATTGCCCACAAACGTC 58.606 47.619 0.00 0.00 39.77 4.34
2850 7864 1.067821 TCAAATTGCCCACAAACGTCC 59.932 47.619 0.00 0.00 39.77 4.79
2851 7865 0.031449 AAATTGCCCACAAACGTCCG 59.969 50.000 0.00 0.00 39.77 4.79
2852 7866 1.801309 AATTGCCCACAAACGTCCGG 61.801 55.000 0.00 0.00 39.77 5.14
2853 7867 2.684192 ATTGCCCACAAACGTCCGGA 62.684 55.000 0.00 0.00 39.77 5.14
2854 7868 3.351416 GCCCACAAACGTCCGGAC 61.351 66.667 25.28 25.28 0.00 4.79
2855 7869 2.667199 CCCACAAACGTCCGGACC 60.667 66.667 28.52 11.28 0.00 4.46
2856 7870 3.039588 CCACAAACGTCCGGACCG 61.040 66.667 28.52 23.77 0.00 4.79
2857 7871 3.708734 CACAAACGTCCGGACCGC 61.709 66.667 28.52 4.56 0.00 5.68
2865 7879 3.824469 TCCGGACCGCGCGATTTA 61.824 61.111 34.63 8.50 0.00 1.40
2866 7880 3.327754 CCGGACCGCGCGATTTAG 61.328 66.667 34.63 17.10 0.00 1.85
2867 7881 2.278336 CGGACCGCGCGATTTAGA 60.278 61.111 34.63 0.00 0.00 2.10
2868 7882 2.574222 CGGACCGCGCGATTTAGAC 61.574 63.158 34.63 14.19 0.00 2.59
2869 7883 2.574222 GGACCGCGCGATTTAGACG 61.574 63.158 34.63 14.59 0.00 4.18
2870 7884 1.870901 GACCGCGCGATTTAGACGT 60.871 57.895 34.63 18.21 0.00 4.34
2871 7885 2.062890 GACCGCGCGATTTAGACGTG 62.063 60.000 34.63 12.93 42.83 4.49
2872 7886 2.156446 CCGCGCGATTTAGACGTGT 61.156 57.895 34.63 0.00 42.12 4.49
2873 7887 1.680105 CCGCGCGATTTAGACGTGTT 61.680 55.000 34.63 0.00 42.12 3.32
2874 7888 0.313233 CGCGCGATTTAGACGTGTTC 60.313 55.000 28.94 0.00 42.12 3.18
2875 7889 0.989890 GCGCGATTTAGACGTGTTCT 59.010 50.000 12.10 0.00 42.12 3.01
2876 7890 1.266404 GCGCGATTTAGACGTGTTCTG 60.266 52.381 12.10 0.00 42.12 3.02
2877 7891 1.266404 CGCGATTTAGACGTGTTCTGC 60.266 52.381 0.00 0.00 35.55 4.26
2878 7892 1.060698 GCGATTTAGACGTGTTCTGCC 59.939 52.381 0.00 0.00 35.55 4.85
2879 7893 1.320555 CGATTTAGACGTGTTCTGCCG 59.679 52.381 0.00 0.00 35.55 5.69
2880 7894 2.334838 GATTTAGACGTGTTCTGCCGT 58.665 47.619 0.00 0.00 40.54 5.68
2883 7897 2.028484 GACGTGTTCTGCCGTCCA 59.972 61.111 0.00 0.00 45.74 4.02
2884 7898 1.593209 GACGTGTTCTGCCGTCCAA 60.593 57.895 0.00 0.00 45.74 3.53
2885 7899 1.828331 GACGTGTTCTGCCGTCCAAC 61.828 60.000 0.00 0.00 45.74 3.77
2886 7900 1.885388 CGTGTTCTGCCGTCCAACA 60.885 57.895 0.00 0.00 0.00 3.33
2887 7901 1.647084 GTGTTCTGCCGTCCAACAC 59.353 57.895 0.00 0.00 42.21 3.32
2895 7909 4.354155 CGTCCAACACGGTCATGT 57.646 55.556 0.00 0.00 45.46 3.21
2896 7910 3.500455 CGTCCAACACGGTCATGTA 57.500 52.632 0.00 0.00 45.46 2.29
2897 7911 2.004583 CGTCCAACACGGTCATGTAT 57.995 50.000 0.00 0.00 45.46 2.29
2898 7912 1.924524 CGTCCAACACGGTCATGTATC 59.075 52.381 0.00 0.00 45.46 2.24
2899 7913 1.924524 GTCCAACACGGTCATGTATCG 59.075 52.381 0.00 0.00 37.86 2.92
2900 7914 1.134936 TCCAACACGGTCATGTATCGG 60.135 52.381 0.00 0.00 35.41 4.18
2901 7915 1.404986 CCAACACGGTCATGTATCGGT 60.405 52.381 0.00 0.00 35.41 4.69
2902 7916 1.924524 CAACACGGTCATGTATCGGTC 59.075 52.381 0.00 0.00 35.41 4.79
2903 7917 0.458669 ACACGGTCATGTATCGGTCC 59.541 55.000 0.00 0.00 35.41 4.46
2904 7918 0.594028 CACGGTCATGTATCGGTCCG 60.594 60.000 4.39 4.39 42.94 4.79
2905 7919 1.033746 ACGGTCATGTATCGGTCCGT 61.034 55.000 11.88 0.00 44.87 4.69
2906 7920 0.101759 CGGTCATGTATCGGTCCGTT 59.898 55.000 11.88 5.52 34.38 4.44
2907 7921 1.567504 GGTCATGTATCGGTCCGTTG 58.432 55.000 11.88 3.23 0.00 4.10
2908 7922 1.567504 GTCATGTATCGGTCCGTTGG 58.432 55.000 11.88 0.00 0.00 3.77
2909 7923 0.462375 TCATGTATCGGTCCGTTGGG 59.538 55.000 11.88 0.00 0.00 4.12
2910 7924 1.145377 ATGTATCGGTCCGTTGGGC 59.855 57.895 11.88 0.00 0.00 5.36
2911 7925 2.202974 GTATCGGTCCGTTGGGCC 60.203 66.667 11.88 0.00 0.00 5.80
2926 7940 3.712881 GCCGTCCGCACACACTTC 61.713 66.667 0.00 0.00 37.47 3.01
2927 7941 2.029073 CCGTCCGCACACACTTCT 59.971 61.111 0.00 0.00 0.00 2.85
2928 7942 1.594293 CCGTCCGCACACACTTCTT 60.594 57.895 0.00 0.00 0.00 2.52
2929 7943 1.157870 CCGTCCGCACACACTTCTTT 61.158 55.000 0.00 0.00 0.00 2.52
2930 7944 0.232303 CGTCCGCACACACTTCTTTC 59.768 55.000 0.00 0.00 0.00 2.62
2931 7945 0.586802 GTCCGCACACACTTCTTTCC 59.413 55.000 0.00 0.00 0.00 3.13
2932 7946 0.878523 TCCGCACACACTTCTTTCCG 60.879 55.000 0.00 0.00 0.00 4.30
2933 7947 1.082756 CGCACACACTTCTTTCCGC 60.083 57.895 0.00 0.00 0.00 5.54
2934 7948 1.771073 CGCACACACTTCTTTCCGCA 61.771 55.000 0.00 0.00 0.00 5.69
2935 7949 0.380378 GCACACACTTCTTTCCGCAA 59.620 50.000 0.00 0.00 0.00 4.85
2936 7950 1.202245 GCACACACTTCTTTCCGCAAA 60.202 47.619 0.00 0.00 0.00 3.68
2937 7951 2.733858 GCACACACTTCTTTCCGCAAAA 60.734 45.455 0.00 0.00 0.00 2.44
2938 7952 2.851824 CACACACTTCTTTCCGCAAAAC 59.148 45.455 0.00 0.00 0.00 2.43
2939 7953 2.159296 ACACACTTCTTTCCGCAAAACC 60.159 45.455 0.00 0.00 0.00 3.27
2940 7954 1.064952 ACACTTCTTTCCGCAAAACCG 59.935 47.619 0.00 0.00 0.00 4.44
2949 7963 1.574428 CGCAAAACCGGAGACAAGG 59.426 57.895 9.46 0.00 0.00 3.61
2950 7964 1.852067 CGCAAAACCGGAGACAAGGG 61.852 60.000 9.46 0.00 0.00 3.95
2951 7965 1.524008 GCAAAACCGGAGACAAGGGG 61.524 60.000 9.46 0.00 0.00 4.79
2952 7966 0.893727 CAAAACCGGAGACAAGGGGG 60.894 60.000 9.46 0.00 0.00 5.40
2953 7967 1.358051 AAAACCGGAGACAAGGGGGT 61.358 55.000 9.46 0.00 0.00 4.95
2954 7968 2.064242 AAACCGGAGACAAGGGGGTG 62.064 60.000 9.46 0.00 0.00 4.61
2955 7969 3.717294 CCGGAGACAAGGGGGTGG 61.717 72.222 0.00 0.00 0.00 4.61
2956 7970 3.717294 CGGAGACAAGGGGGTGGG 61.717 72.222 0.00 0.00 0.00 4.61
2957 7971 3.339093 GGAGACAAGGGGGTGGGG 61.339 72.222 0.00 0.00 0.00 4.96
2958 7972 3.339093 GAGACAAGGGGGTGGGGG 61.339 72.222 0.00 0.00 0.00 5.40
2983 7997 3.993103 CGTTCCGACCGCTATCAC 58.007 61.111 0.00 0.00 0.00 3.06
2984 7998 1.937846 CGTTCCGACCGCTATCACG 60.938 63.158 0.00 0.00 0.00 4.35
2985 7999 1.138247 GTTCCGACCGCTATCACGT 59.862 57.895 0.00 0.00 0.00 4.49
2986 8000 0.864797 GTTCCGACCGCTATCACGTC 60.865 60.000 0.00 0.00 0.00 4.34
2987 8001 1.996786 TTCCGACCGCTATCACGTCC 61.997 60.000 0.00 0.00 0.00 4.79
2988 8002 2.352001 CGACCGCTATCACGTCCG 60.352 66.667 0.00 0.00 0.00 4.79
2989 8003 2.654404 GACCGCTATCACGTCCGC 60.654 66.667 0.00 0.00 0.00 5.54
2990 8004 3.122250 GACCGCTATCACGTCCGCT 62.122 63.158 0.00 0.00 0.00 5.52
2991 8005 2.104331 CCGCTATCACGTCCGCTT 59.896 61.111 0.00 0.00 0.00 4.68
2992 8006 2.230940 CCGCTATCACGTCCGCTTG 61.231 63.158 0.00 0.00 0.00 4.01
2993 8007 1.516386 CGCTATCACGTCCGCTTGT 60.516 57.895 0.00 0.00 0.00 3.16
2994 8008 1.742900 CGCTATCACGTCCGCTTGTG 61.743 60.000 0.00 0.00 37.44 3.33
2996 8010 1.269166 CTATCACGTCCGCTTGTGAC 58.731 55.000 4.33 0.00 46.87 3.67
2997 8011 0.885879 TATCACGTCCGCTTGTGACT 59.114 50.000 4.33 0.00 46.87 3.41
2998 8012 0.885879 ATCACGTCCGCTTGTGACTA 59.114 50.000 4.33 0.00 46.87 2.59
2999 8013 0.039798 TCACGTCCGCTTGTGACTAC 60.040 55.000 0.00 0.00 40.02 2.73
3000 8014 1.007336 CACGTCCGCTTGTGACTACC 61.007 60.000 0.00 0.00 38.36 3.18
3001 8015 1.445582 CGTCCGCTTGTGACTACCC 60.446 63.158 0.00 0.00 0.00 3.69
3002 8016 1.874345 CGTCCGCTTGTGACTACCCT 61.874 60.000 0.00 0.00 0.00 4.34
3003 8017 1.180029 GTCCGCTTGTGACTACCCTA 58.820 55.000 0.00 0.00 0.00 3.53
3004 8018 1.134560 GTCCGCTTGTGACTACCCTAG 59.865 57.143 0.00 0.00 0.00 3.02
3005 8019 0.179108 CCGCTTGTGACTACCCTAGC 60.179 60.000 0.00 0.00 0.00 3.42
3006 8020 0.179108 CGCTTGTGACTACCCTAGCC 60.179 60.000 0.00 0.00 0.00 3.93
3007 8021 0.178301 GCTTGTGACTACCCTAGCCC 59.822 60.000 0.00 0.00 0.00 5.19
3008 8022 1.568504 CTTGTGACTACCCTAGCCCA 58.431 55.000 0.00 0.00 0.00 5.36
3009 8023 1.207329 CTTGTGACTACCCTAGCCCAC 59.793 57.143 0.00 0.00 34.95 4.61
3010 8024 0.412244 TGTGACTACCCTAGCCCACT 59.588 55.000 0.00 0.00 35.23 4.00
3011 8025 1.112950 GTGACTACCCTAGCCCACTC 58.887 60.000 0.00 0.00 33.00 3.51
3012 8026 0.708209 TGACTACCCTAGCCCACTCA 59.292 55.000 0.00 0.00 0.00 3.41
3013 8027 1.078159 TGACTACCCTAGCCCACTCAA 59.922 52.381 0.00 0.00 0.00 3.02
3014 8028 2.185387 GACTACCCTAGCCCACTCAAA 58.815 52.381 0.00 0.00 0.00 2.69
3015 8029 2.570302 GACTACCCTAGCCCACTCAAAA 59.430 50.000 0.00 0.00 0.00 2.44
3016 8030 2.983898 ACTACCCTAGCCCACTCAAAAA 59.016 45.455 0.00 0.00 0.00 1.94
3017 8031 3.591977 ACTACCCTAGCCCACTCAAAAAT 59.408 43.478 0.00 0.00 0.00 1.82
3018 8032 3.087370 ACCCTAGCCCACTCAAAAATC 57.913 47.619 0.00 0.00 0.00 2.17
3019 8033 2.291605 ACCCTAGCCCACTCAAAAATCC 60.292 50.000 0.00 0.00 0.00 3.01
3020 8034 2.379005 CCTAGCCCACTCAAAAATCCC 58.621 52.381 0.00 0.00 0.00 3.85
3021 8035 2.379005 CTAGCCCACTCAAAAATCCCC 58.621 52.381 0.00 0.00 0.00 4.81
3022 8036 0.252239 AGCCCACTCAAAAATCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
3040 8054 3.357079 CTGCCTCTGCCGCGTTTT 61.357 61.111 4.92 0.00 36.33 2.43
3041 8055 3.314388 CTGCCTCTGCCGCGTTTTC 62.314 63.158 4.92 0.00 36.33 2.29
3042 8056 4.103103 GCCTCTGCCGCGTTTTCC 62.103 66.667 4.92 0.00 0.00 3.13
3043 8057 2.668212 CCTCTGCCGCGTTTTCCA 60.668 61.111 4.92 0.00 0.00 3.53
3044 8058 2.040544 CCTCTGCCGCGTTTTCCAT 61.041 57.895 4.92 0.00 0.00 3.41
3045 8059 1.425428 CTCTGCCGCGTTTTCCATC 59.575 57.895 4.92 0.00 0.00 3.51
3046 8060 2.098298 CTGCCGCGTTTTCCATCG 59.902 61.111 4.92 0.00 0.00 3.84
3047 8061 2.357638 TGCCGCGTTTTCCATCGA 60.358 55.556 4.92 0.00 0.00 3.59
3048 8062 1.906994 CTGCCGCGTTTTCCATCGAA 61.907 55.000 4.92 0.00 0.00 3.71
3049 8063 1.511254 GCCGCGTTTTCCATCGAAC 60.511 57.895 4.92 0.00 0.00 3.95
3052 8066 4.737601 CGTTTTCCATCGAACGCC 57.262 55.556 0.00 0.00 41.54 5.68
3053 8067 2.159181 CGTTTTCCATCGAACGCCT 58.841 52.632 0.00 0.00 41.54 5.52
3054 8068 0.179225 CGTTTTCCATCGAACGCCTG 60.179 55.000 0.00 0.00 41.54 4.85
3055 8069 0.872388 GTTTTCCATCGAACGCCTGT 59.128 50.000 0.00 0.00 0.00 4.00
3056 8070 0.871722 TTTTCCATCGAACGCCTGTG 59.128 50.000 0.00 0.00 0.00 3.66
3057 8071 1.573829 TTTCCATCGAACGCCTGTGC 61.574 55.000 0.00 0.00 0.00 4.57
3058 8072 3.499737 CCATCGAACGCCTGTGCC 61.500 66.667 0.00 0.00 0.00 5.01
3059 8073 3.853330 CATCGAACGCCTGTGCCG 61.853 66.667 0.00 0.00 0.00 5.69
3063 8077 2.740826 GAACGCCTGTGCCGCTTA 60.741 61.111 0.00 0.00 0.00 3.09
3064 8078 2.046314 AACGCCTGTGCCGCTTAT 60.046 55.556 0.00 0.00 0.00 1.73
3065 8079 2.036764 GAACGCCTGTGCCGCTTATC 62.037 60.000 0.00 0.00 0.00 1.75
3066 8080 2.511373 CGCCTGTGCCGCTTATCA 60.511 61.111 0.00 0.00 0.00 2.15
3067 8081 2.813179 CGCCTGTGCCGCTTATCAC 61.813 63.158 0.00 0.00 0.00 3.06
3068 8082 2.813179 GCCTGTGCCGCTTATCACG 61.813 63.158 0.00 0.00 36.06 4.35
3069 8083 1.447838 CCTGTGCCGCTTATCACGT 60.448 57.895 0.00 0.00 36.06 4.49
3070 8084 1.421410 CCTGTGCCGCTTATCACGTC 61.421 60.000 0.00 0.00 36.06 4.34
3071 8085 0.735978 CTGTGCCGCTTATCACGTCA 60.736 55.000 0.00 0.00 36.06 4.35
3072 8086 1.011968 TGTGCCGCTTATCACGTCAC 61.012 55.000 0.00 0.00 36.06 3.67
3073 8087 1.011968 GTGCCGCTTATCACGTCACA 61.012 55.000 0.00 0.00 0.00 3.58
3074 8088 0.108377 TGCCGCTTATCACGTCACAT 60.108 50.000 0.00 0.00 0.00 3.21
3075 8089 1.006832 GCCGCTTATCACGTCACATT 58.993 50.000 0.00 0.00 0.00 2.71
3076 8090 1.004927 GCCGCTTATCACGTCACATTC 60.005 52.381 0.00 0.00 0.00 2.67
3077 8091 2.267426 CCGCTTATCACGTCACATTCA 58.733 47.619 0.00 0.00 0.00 2.57
3078 8092 2.866156 CCGCTTATCACGTCACATTCAT 59.134 45.455 0.00 0.00 0.00 2.57
3079 8093 3.302675 CCGCTTATCACGTCACATTCATG 60.303 47.826 0.00 0.00 0.00 3.07
3080 8094 3.306973 CGCTTATCACGTCACATTCATGT 59.693 43.478 0.00 0.00 42.84 3.21
3081 8095 4.548916 CGCTTATCACGTCACATTCATGTC 60.549 45.833 0.00 0.00 39.39 3.06
3082 8096 4.548916 GCTTATCACGTCACATTCATGTCG 60.549 45.833 0.00 0.00 39.39 4.35
3083 8097 1.067693 TCACGTCACATTCATGTCGC 58.932 50.000 0.00 0.00 39.39 5.19
3084 8098 0.095245 CACGTCACATTCATGTCGCC 59.905 55.000 0.00 0.00 39.39 5.54
3085 8099 1.019278 ACGTCACATTCATGTCGCCC 61.019 55.000 0.00 0.00 39.39 6.13
3086 8100 1.705337 CGTCACATTCATGTCGCCCC 61.705 60.000 0.00 0.00 39.39 5.80
3087 8101 0.676466 GTCACATTCATGTCGCCCCA 60.676 55.000 0.00 0.00 39.39 4.96
3088 8102 0.392863 TCACATTCATGTCGCCCCAG 60.393 55.000 0.00 0.00 39.39 4.45
3089 8103 0.392863 CACATTCATGTCGCCCCAGA 60.393 55.000 0.00 0.00 39.39 3.86
3090 8104 0.107508 ACATTCATGTCGCCCCAGAG 60.108 55.000 0.00 0.00 35.87 3.35
3091 8105 1.153086 ATTCATGTCGCCCCAGAGC 60.153 57.895 0.00 0.00 0.00 4.09
3092 8106 1.913951 ATTCATGTCGCCCCAGAGCA 61.914 55.000 0.00 0.00 0.00 4.26
3093 8107 1.913951 TTCATGTCGCCCCAGAGCAT 61.914 55.000 0.00 0.00 0.00 3.79
3094 8108 2.184830 CATGTCGCCCCAGAGCATG 61.185 63.158 0.00 0.00 0.00 4.06
3095 8109 4.783621 TGTCGCCCCAGAGCATGC 62.784 66.667 10.51 10.51 0.00 4.06
3096 8110 4.783621 GTCGCCCCAGAGCATGCA 62.784 66.667 21.98 0.00 0.00 3.96
3097 8111 4.478371 TCGCCCCAGAGCATGCAG 62.478 66.667 21.98 9.16 0.00 4.41
3107 8121 3.197790 GCATGCAGCGGTCGACAT 61.198 61.111 18.91 0.00 0.00 3.06
3108 8122 2.753966 GCATGCAGCGGTCGACATT 61.754 57.895 18.91 0.00 0.00 2.71
3109 8123 1.061411 CATGCAGCGGTCGACATTG 59.939 57.895 18.91 12.75 0.00 2.82
3110 8124 1.079197 ATGCAGCGGTCGACATTGA 60.079 52.632 18.91 3.45 0.00 2.57
3111 8125 0.462581 ATGCAGCGGTCGACATTGAT 60.463 50.000 18.91 1.92 0.00 2.57
3112 8126 1.349627 GCAGCGGTCGACATTGATG 59.650 57.895 18.91 15.69 0.00 3.07
3113 8127 1.349627 CAGCGGTCGACATTGATGC 59.650 57.895 18.91 10.51 0.00 3.91
3114 8128 1.815421 AGCGGTCGACATTGATGCC 60.815 57.895 18.91 0.00 0.00 4.40
3115 8129 1.815421 GCGGTCGACATTGATGCCT 60.815 57.895 18.91 0.00 0.00 4.75
3116 8130 2.009108 CGGTCGACATTGATGCCTG 58.991 57.895 18.91 0.00 0.00 4.85
3117 8131 1.723870 GGTCGACATTGATGCCTGC 59.276 57.895 18.91 0.00 0.00 4.85
3118 8132 1.349627 GTCGACATTGATGCCTGCG 59.650 57.895 11.55 0.00 0.00 5.18
3119 8133 1.083806 GTCGACATTGATGCCTGCGA 61.084 55.000 11.55 0.00 0.00 5.10
3120 8134 0.179076 TCGACATTGATGCCTGCGAT 60.179 50.000 0.00 0.00 0.00 4.58
3121 8135 0.659427 CGACATTGATGCCTGCGATT 59.341 50.000 0.00 0.00 0.00 3.34
3122 8136 1.064505 CGACATTGATGCCTGCGATTT 59.935 47.619 0.00 0.00 0.00 2.17
3123 8137 2.456989 GACATTGATGCCTGCGATTTG 58.543 47.619 0.00 0.00 0.00 2.32
3124 8138 2.093890 ACATTGATGCCTGCGATTTGA 58.906 42.857 0.00 0.00 0.00 2.69
3125 8139 2.159338 ACATTGATGCCTGCGATTTGAC 60.159 45.455 0.00 0.00 0.00 3.18
3126 8140 0.810648 TTGATGCCTGCGATTTGACC 59.189 50.000 0.00 0.00 0.00 4.02
3127 8141 0.322366 TGATGCCTGCGATTTGACCA 60.322 50.000 0.00 0.00 0.00 4.02
3128 8142 0.379669 GATGCCTGCGATTTGACCAG 59.620 55.000 0.00 0.00 0.00 4.00
3129 8143 0.035152 ATGCCTGCGATTTGACCAGA 60.035 50.000 0.00 0.00 0.00 3.86
3130 8144 0.955428 TGCCTGCGATTTGACCAGAC 60.955 55.000 0.00 0.00 0.00 3.51
3131 8145 1.970917 GCCTGCGATTTGACCAGACG 61.971 60.000 0.00 0.00 0.00 4.18
3132 8146 0.389817 CCTGCGATTTGACCAGACGA 60.390 55.000 0.00 0.00 0.00 4.20
3133 8147 0.994995 CTGCGATTTGACCAGACGAG 59.005 55.000 0.00 0.00 0.00 4.18
3134 8148 0.601057 TGCGATTTGACCAGACGAGA 59.399 50.000 0.00 0.00 0.00 4.04
3135 8149 1.272781 GCGATTTGACCAGACGAGAG 58.727 55.000 0.00 0.00 0.00 3.20
3136 8150 1.914634 CGATTTGACCAGACGAGAGG 58.085 55.000 0.00 0.00 0.00 3.69
3137 8151 1.469940 CGATTTGACCAGACGAGAGGG 60.470 57.143 0.00 0.00 0.00 4.30
3138 8152 0.250513 ATTTGACCAGACGAGAGGGC 59.749 55.000 0.00 0.00 0.00 5.19
3139 8153 2.154798 TTTGACCAGACGAGAGGGCG 62.155 60.000 0.00 0.00 34.89 6.13
3140 8154 2.750637 GACCAGACGAGAGGGCGA 60.751 66.667 0.00 0.00 34.83 5.54
3141 8155 3.053849 GACCAGACGAGAGGGCGAC 62.054 68.421 0.00 0.00 34.83 5.19
3142 8156 4.180946 CCAGACGAGAGGGCGACG 62.181 72.222 0.00 0.00 34.83 5.12
3143 8157 4.838486 CAGACGAGAGGGCGACGC 62.838 72.222 12.43 12.43 34.83 5.19
3145 8159 4.838486 GACGAGAGGGCGACGCTG 62.838 72.222 20.77 5.59 34.83 5.18
3147 8161 4.838486 CGAGAGGGCGACGCTGAC 62.838 72.222 20.77 10.50 0.00 3.51
3148 8162 3.444805 GAGAGGGCGACGCTGACT 61.445 66.667 20.77 15.19 0.00 3.41
3149 8163 2.045242 AGAGGGCGACGCTGACTA 60.045 61.111 20.77 0.00 0.00 2.59
3150 8164 1.654954 GAGAGGGCGACGCTGACTAA 61.655 60.000 20.77 0.00 0.00 2.24
3151 8165 1.516603 GAGGGCGACGCTGACTAAC 60.517 63.158 20.77 0.11 0.00 2.34
3152 8166 2.879462 GGGCGACGCTGACTAACG 60.879 66.667 20.77 0.00 0.00 3.18
3153 8167 3.542742 GGCGACGCTGACTAACGC 61.543 66.667 20.77 0.00 46.79 4.84
3160 8174 3.403276 GCTGACTAACGCGACTTCT 57.597 52.632 15.93 0.00 0.00 2.85
3161 8175 1.261097 GCTGACTAACGCGACTTCTC 58.739 55.000 15.93 0.47 0.00 2.87
3162 8176 1.401148 GCTGACTAACGCGACTTCTCA 60.401 52.381 15.93 5.60 0.00 3.27
3163 8177 2.510874 CTGACTAACGCGACTTCTCAG 58.489 52.381 15.93 11.79 0.00 3.35
3164 8178 1.199327 TGACTAACGCGACTTCTCAGG 59.801 52.381 15.93 0.00 0.00 3.86
3165 8179 0.109226 ACTAACGCGACTTCTCAGGC 60.109 55.000 15.93 0.00 0.00 4.85
3214 8228 4.624364 CACCGTCAGCAGTGGCCA 62.624 66.667 0.00 0.00 42.56 5.36
3215 8229 3.872603 ACCGTCAGCAGTGGCCAA 61.873 61.111 7.24 0.00 42.56 4.52
3216 8230 2.594303 CCGTCAGCAGTGGCCAAA 60.594 61.111 7.24 0.00 42.56 3.28
3217 8231 2.620112 CCGTCAGCAGTGGCCAAAG 61.620 63.158 7.24 3.63 42.56 2.77
3218 8232 2.647297 GTCAGCAGTGGCCAAAGC 59.353 61.111 20.07 20.07 42.56 3.51
3219 8233 2.195411 TCAGCAGTGGCCAAAGCA 59.805 55.556 26.86 9.46 42.56 3.91
3220 8234 1.455402 TCAGCAGTGGCCAAAGCAA 60.455 52.632 26.86 14.97 42.56 3.91
3221 8235 1.300388 CAGCAGTGGCCAAAGCAAC 60.300 57.895 26.86 7.03 44.01 4.17
3222 8236 2.029518 GCAGTGGCCAAAGCAACC 59.970 61.111 22.08 2.53 44.87 3.77
3223 8237 2.736531 CAGTGGCCAAAGCAACCC 59.263 61.111 7.24 0.00 44.87 4.11
3224 8238 1.833934 CAGTGGCCAAAGCAACCCT 60.834 57.895 7.24 0.00 44.87 4.34
3225 8239 1.531602 AGTGGCCAAAGCAACCCTC 60.532 57.895 7.24 0.00 44.87 4.30
3226 8240 2.203625 TGGCCAAAGCAACCCTCC 60.204 61.111 0.61 0.00 42.56 4.30
3227 8241 3.373565 GGCCAAAGCAACCCTCCG 61.374 66.667 0.00 0.00 42.56 4.63
3228 8242 4.056125 GCCAAAGCAACCCTCCGC 62.056 66.667 0.00 0.00 39.53 5.54
3229 8243 2.597217 CCAAAGCAACCCTCCGCA 60.597 61.111 0.00 0.00 0.00 5.69
3230 8244 2.644992 CAAAGCAACCCTCCGCAC 59.355 61.111 0.00 0.00 0.00 5.34
3231 8245 2.597510 AAAGCAACCCTCCGCACC 60.598 61.111 0.00 0.00 0.00 5.01
3232 8246 3.429372 AAAGCAACCCTCCGCACCA 62.429 57.895 0.00 0.00 0.00 4.17
3233 8247 4.643387 AGCAACCCTCCGCACCAC 62.643 66.667 0.00 0.00 0.00 4.16
3240 8254 3.716006 CTCCGCACCACGCAACAG 61.716 66.667 0.00 0.00 42.60 3.16
3243 8257 3.716006 CGCACCACGCAACAGGAG 61.716 66.667 0.00 0.00 42.60 3.69
3244 8258 3.357079 GCACCACGCAACAGGAGG 61.357 66.667 0.00 0.00 41.79 4.30
3245 8259 3.357079 CACCACGCAACAGGAGGC 61.357 66.667 0.00 0.00 0.00 4.70
3268 8282 4.959596 GGCTCCTCCGCGAGATGC 62.960 72.222 8.23 10.32 41.47 3.91
3269 8283 4.212913 GCTCCTCCGCGAGATGCA 62.213 66.667 8.23 0.00 46.97 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.823281 TTGTTCGACCAAGTAACTGGA 57.177 42.857 0.00 0.00 38.96 3.86
2 3 3.303791 GCCTTTGTTCGACCAAGTAACTG 60.304 47.826 0.00 0.00 0.00 3.16
3 4 2.876550 GCCTTTGTTCGACCAAGTAACT 59.123 45.455 0.00 0.00 0.00 2.24
4 5 2.614983 TGCCTTTGTTCGACCAAGTAAC 59.385 45.455 0.00 0.00 0.00 2.50
10 2981 1.098712 GTGGTGCCTTTGTTCGACCA 61.099 55.000 0.00 0.00 34.26 4.02
12 2983 1.155424 TCGTGGTGCCTTTGTTCGAC 61.155 55.000 0.00 0.00 0.00 4.20
22 2993 2.793278 AAACAAATTCTCGTGGTGCC 57.207 45.000 0.00 0.00 0.00 5.01
60 3031 8.742125 AGGATAATCTGGTCATAGGATTGTAA 57.258 34.615 0.00 0.00 32.78 2.41
62 3033 7.515514 AGAAGGATAATCTGGTCATAGGATTGT 59.484 37.037 0.00 0.00 32.78 2.71
83 3054 7.559590 ACAAGCATATAAAACTAGCAGAAGG 57.440 36.000 0.00 0.00 0.00 3.46
117 3088 1.468127 TGCCGTCATTTGTGTATGCAG 59.532 47.619 0.00 0.00 0.00 4.41
167 3138 2.125552 GGCTGCAATTTTCCCGCC 60.126 61.111 0.50 0.00 0.00 6.13
213 3184 0.528684 CGGATTTCTCGGGCTCACTC 60.529 60.000 0.00 0.00 0.00 3.51
234 3205 3.256136 AGGTAGCATAGTCTATTCACGCC 59.744 47.826 0.00 0.00 0.00 5.68
250 3221 5.233988 CAAGCTATTGATCTACCAGGTAGC 58.766 45.833 20.77 9.96 38.83 3.58
255 3226 3.982475 TCGCAAGCTATTGATCTACCAG 58.018 45.455 0.00 0.00 38.83 4.00
256 3227 4.400529 TTCGCAAGCTATTGATCTACCA 57.599 40.909 0.00 0.00 38.83 3.25
257 3228 4.570772 TGTTTCGCAAGCTATTGATCTACC 59.429 41.667 0.00 0.00 38.83 3.18
363 3342 6.922957 GCAGTAATACTCTTTCTCCTGAGATG 59.077 42.308 0.00 0.00 37.29 2.90
407 3386 1.542915 CAACTTGGGCATCTGGTCAAG 59.457 52.381 0.00 0.00 41.46 3.02
414 3393 2.173519 CCAATGTCAACTTGGGCATCT 58.826 47.619 0.00 0.00 39.62 2.90
420 3399 5.261209 TCAAAGTTCCAATGTCAACTTGG 57.739 39.130 7.93 5.94 41.09 3.61
434 3413 6.498304 TCAACTTGAGCATCTTTCAAAGTTC 58.502 36.000 0.00 0.00 34.41 3.01
464 3444 5.254115 ACAAATGGCTTCCCTAGAGTTAAC 58.746 41.667 0.00 0.00 0.00 2.01
488 3468 2.358737 GGAGCCACTGACGGTTGG 60.359 66.667 0.00 0.00 0.00 3.77
523 3508 2.739379 GCTTCACACTTTCCTACTGAGC 59.261 50.000 0.00 0.00 0.00 4.26
604 3590 0.169009 GCCATTTCTGCGTCCAAGAC 59.831 55.000 0.00 0.00 0.00 3.01
629 3615 3.266510 TGGATGCTAAGCACTTTCGAT 57.733 42.857 0.00 0.00 43.04 3.59
635 3621 5.126061 CCTTTTGTTATGGATGCTAAGCACT 59.874 40.000 0.00 0.00 43.04 4.40
637 3623 4.402155 CCCTTTTGTTATGGATGCTAAGCA 59.598 41.667 0.00 0.00 44.86 3.91
638 3624 4.402474 ACCCTTTTGTTATGGATGCTAAGC 59.598 41.667 0.00 0.00 0.00 3.09
639 3625 7.201821 CCTTACCCTTTTGTTATGGATGCTAAG 60.202 40.741 0.00 0.00 0.00 2.18
640 3626 6.605594 CCTTACCCTTTTGTTATGGATGCTAA 59.394 38.462 0.00 0.00 0.00 3.09
641 3627 6.126409 CCTTACCCTTTTGTTATGGATGCTA 58.874 40.000 0.00 0.00 0.00 3.49
703 3691 1.830279 ATGTGGTGCATGAGAGGTTG 58.170 50.000 0.00 0.00 36.26 3.77
746 3752 9.964253 CGTCATGCAACTTTTCATCTATATATC 57.036 33.333 0.00 0.00 0.00 1.63
747 3753 9.494271 ACGTCATGCAACTTTTCATCTATATAT 57.506 29.630 0.00 0.00 0.00 0.86
748 3754 8.764287 CACGTCATGCAACTTTTCATCTATATA 58.236 33.333 0.00 0.00 0.00 0.86
749 3755 7.495606 TCACGTCATGCAACTTTTCATCTATAT 59.504 33.333 0.00 0.00 0.00 0.86
750 3756 6.816140 TCACGTCATGCAACTTTTCATCTATA 59.184 34.615 0.00 0.00 0.00 1.31
901 3914 2.015736 CTGCAAGCCAGTGTACCTAG 57.984 55.000 0.00 0.00 36.79 3.02
916 3930 4.767409 CCTATATACCAGTACAGAGCTGCA 59.233 45.833 1.02 0.00 32.93 4.41
1052 4162 4.816984 GGAGGGAGGAGACGGCGA 62.817 72.222 16.62 0.00 0.00 5.54
1652 4819 4.433615 AGTCACTGCGGTAGTATGAAATG 58.566 43.478 0.00 0.00 37.60 2.32
1654 4821 5.647589 CTTAGTCACTGCGGTAGTATGAAA 58.352 41.667 0.00 0.00 37.60 2.69
1677 4844 1.270968 CGTCGATCGATGCAACAGC 59.729 57.895 23.29 6.23 42.86 4.40
1708 4875 1.298157 AAGCACGCGTACATGCATGT 61.298 50.000 33.20 33.20 44.59 3.21
1856 5118 2.463497 ATCCTCCGAGCCCTATCCCC 62.463 65.000 0.00 0.00 0.00 4.81
1895 5157 2.431057 CCTCAGTTTACGGACCTGCTAT 59.569 50.000 0.00 0.00 0.00 2.97
1969 6979 1.079127 CACGGACTTCAGGCGGAAT 60.079 57.895 0.00 0.00 34.32 3.01
2114 7124 0.974010 TAGTTGAGGATTCCGGCGGT 60.974 55.000 27.32 7.44 0.00 5.68
2790 7804 3.897141 CCTAAGAAGGGAAGACCAGAC 57.103 52.381 0.00 0.00 43.89 3.51
2801 7815 3.673323 GCGTTCAAAATGCCCTAAGAAGG 60.673 47.826 0.00 0.00 43.25 3.46
2804 7818 2.487762 CAGCGTTCAAAATGCCCTAAGA 59.512 45.455 0.44 0.00 44.49 2.10
2810 7824 0.388520 GGGTCAGCGTTCAAAATGCC 60.389 55.000 0.44 0.00 44.49 4.40
2815 7829 2.045561 TTTGAGGGTCAGCGTTCAAA 57.954 45.000 2.13 2.13 37.25 2.69
2817 7831 1.879380 CAATTTGAGGGTCAGCGTTCA 59.121 47.619 0.00 0.00 0.00 3.18
2818 7832 1.401539 GCAATTTGAGGGTCAGCGTTC 60.402 52.381 0.00 0.00 0.00 3.95
2822 7836 0.899717 TGGGCAATTTGAGGGTCAGC 60.900 55.000 0.00 0.00 0.00 4.26
2823 7837 0.890683 GTGGGCAATTTGAGGGTCAG 59.109 55.000 0.00 0.00 0.00 3.51
2824 7838 0.187117 TGTGGGCAATTTGAGGGTCA 59.813 50.000 0.00 0.00 0.00 4.02
2825 7839 1.337118 TTGTGGGCAATTTGAGGGTC 58.663 50.000 0.00 0.00 0.00 4.46
2826 7840 1.416030 GTTTGTGGGCAATTTGAGGGT 59.584 47.619 0.00 0.00 34.18 4.34
2827 7841 1.605202 CGTTTGTGGGCAATTTGAGGG 60.605 52.381 0.00 0.00 34.18 4.30
2828 7842 1.068434 ACGTTTGTGGGCAATTTGAGG 59.932 47.619 0.00 0.00 34.18 3.86
2829 7843 2.393764 GACGTTTGTGGGCAATTTGAG 58.606 47.619 0.00 0.00 34.18 3.02
2830 7844 1.067821 GGACGTTTGTGGGCAATTTGA 59.932 47.619 0.00 0.00 34.18 2.69
2831 7845 1.496934 GGACGTTTGTGGGCAATTTG 58.503 50.000 0.00 0.00 34.18 2.32
2832 7846 0.031449 CGGACGTTTGTGGGCAATTT 59.969 50.000 0.00 0.00 34.18 1.82
2833 7847 1.657556 CGGACGTTTGTGGGCAATT 59.342 52.632 0.00 0.00 34.18 2.32
2834 7848 2.265182 CCGGACGTTTGTGGGCAAT 61.265 57.895 0.00 0.00 34.18 3.56
2835 7849 2.902846 CCGGACGTTTGTGGGCAA 60.903 61.111 0.00 0.00 0.00 4.52
2836 7850 3.862991 TCCGGACGTTTGTGGGCA 61.863 61.111 0.00 0.00 0.00 5.36
2837 7851 3.351416 GTCCGGACGTTTGTGGGC 61.351 66.667 20.85 0.00 0.00 5.36
2838 7852 2.667199 GGTCCGGACGTTTGTGGG 60.667 66.667 27.68 0.00 0.00 4.61
2839 7853 3.039588 CGGTCCGGACGTTTGTGG 61.040 66.667 27.68 7.27 0.00 4.17
2840 7854 3.708734 GCGGTCCGGACGTTTGTG 61.709 66.667 27.68 13.64 0.00 3.33
2848 7862 3.761445 CTAAATCGCGCGGTCCGGA 62.761 63.158 31.69 9.99 37.44 5.14
2849 7863 3.327754 CTAAATCGCGCGGTCCGG 61.328 66.667 31.69 12.32 37.44 5.14
2850 7864 2.278336 TCTAAATCGCGCGGTCCG 60.278 61.111 31.69 14.80 40.75 4.79
2851 7865 2.574222 CGTCTAAATCGCGCGGTCC 61.574 63.158 31.69 8.22 0.00 4.46
2852 7866 1.870901 ACGTCTAAATCGCGCGGTC 60.871 57.895 31.69 9.59 0.00 4.79
2853 7867 2.156446 CACGTCTAAATCGCGCGGT 61.156 57.895 31.69 23.12 0.00 5.68
2854 7868 1.680105 AACACGTCTAAATCGCGCGG 61.680 55.000 31.69 13.80 0.00 6.46
2855 7869 0.313233 GAACACGTCTAAATCGCGCG 60.313 55.000 26.76 26.76 0.00 6.86
2856 7870 0.989890 AGAACACGTCTAAATCGCGC 59.010 50.000 0.00 0.00 33.56 6.86
2857 7871 1.266404 GCAGAACACGTCTAAATCGCG 60.266 52.381 0.00 0.00 33.56 5.87
2858 7872 1.060698 GGCAGAACACGTCTAAATCGC 59.939 52.381 0.00 0.00 33.56 4.58
2859 7873 1.320555 CGGCAGAACACGTCTAAATCG 59.679 52.381 0.00 0.00 33.56 3.34
2860 7874 2.334838 ACGGCAGAACACGTCTAAATC 58.665 47.619 0.00 0.00 39.40 2.17
2861 7875 2.450609 ACGGCAGAACACGTCTAAAT 57.549 45.000 0.00 0.00 39.40 1.40
2862 7876 3.972107 ACGGCAGAACACGTCTAAA 57.028 47.368 0.00 0.00 39.40 1.85
2868 7882 1.885388 TGTTGGACGGCAGAACACG 60.885 57.895 1.09 0.00 0.00 4.49
2869 7883 1.647084 GTGTTGGACGGCAGAACAC 59.353 57.895 16.98 16.98 41.83 3.32
2870 7884 1.885388 CGTGTTGGACGGCAGAACA 60.885 57.895 1.09 1.09 44.85 3.18
2871 7885 2.935955 CGTGTTGGACGGCAGAAC 59.064 61.111 0.00 0.00 44.85 3.01
2879 7893 1.924524 CGATACATGACCGTGTTGGAC 59.075 52.381 0.00 0.00 42.00 4.02
2880 7894 1.134936 CCGATACATGACCGTGTTGGA 60.135 52.381 0.00 0.00 42.00 3.53
2881 7895 1.286501 CCGATACATGACCGTGTTGG 58.713 55.000 0.00 0.00 46.41 3.77
2882 7896 1.924524 GACCGATACATGACCGTGTTG 59.075 52.381 0.00 0.00 33.62 3.33
2883 7897 1.134907 GGACCGATACATGACCGTGTT 60.135 52.381 0.00 0.00 33.62 3.32
2884 7898 0.458669 GGACCGATACATGACCGTGT 59.541 55.000 0.00 0.27 36.13 4.49
2885 7899 0.594028 CGGACCGATACATGACCGTG 60.594 60.000 8.64 0.00 36.38 4.94
2886 7900 1.033746 ACGGACCGATACATGACCGT 61.034 55.000 23.38 0.00 46.69 4.83
2887 7901 0.101759 AACGGACCGATACATGACCG 59.898 55.000 23.38 0.00 44.77 4.79
2888 7902 1.567504 CAACGGACCGATACATGACC 58.432 55.000 23.38 0.00 0.00 4.02
2889 7903 1.567504 CCAACGGACCGATACATGAC 58.432 55.000 23.38 0.00 0.00 3.06
2890 7904 0.462375 CCCAACGGACCGATACATGA 59.538 55.000 23.38 0.00 0.00 3.07
2891 7905 1.157870 GCCCAACGGACCGATACATG 61.158 60.000 23.38 10.65 0.00 3.21
2892 7906 1.145377 GCCCAACGGACCGATACAT 59.855 57.895 23.38 0.00 0.00 2.29
2893 7907 2.580276 GCCCAACGGACCGATACA 59.420 61.111 23.38 0.00 0.00 2.29
2894 7908 2.202974 GGCCCAACGGACCGATAC 60.203 66.667 23.38 4.77 0.00 2.24
2895 7909 3.840594 CGGCCCAACGGACCGATA 61.841 66.667 23.38 0.00 45.95 2.92
2909 7923 3.712881 GAAGTGTGTGCGGACGGC 61.713 66.667 1.60 0.00 43.96 5.68
2910 7924 1.157870 AAAGAAGTGTGTGCGGACGG 61.158 55.000 1.60 0.00 0.00 4.79
2911 7925 0.232303 GAAAGAAGTGTGTGCGGACG 59.768 55.000 1.60 0.00 0.00 4.79
2912 7926 0.586802 GGAAAGAAGTGTGTGCGGAC 59.413 55.000 0.00 0.00 0.00 4.79
2913 7927 0.878523 CGGAAAGAAGTGTGTGCGGA 60.879 55.000 0.00 0.00 0.00 5.54
2914 7928 1.569493 CGGAAAGAAGTGTGTGCGG 59.431 57.895 0.00 0.00 0.00 5.69
2915 7929 1.082756 GCGGAAAGAAGTGTGTGCG 60.083 57.895 0.00 0.00 0.00 5.34
2916 7930 0.380378 TTGCGGAAAGAAGTGTGTGC 59.620 50.000 0.00 0.00 0.00 4.57
2917 7931 2.842208 TTTGCGGAAAGAAGTGTGTG 57.158 45.000 0.00 0.00 0.00 3.82
2918 7932 2.159296 GGTTTTGCGGAAAGAAGTGTGT 60.159 45.455 1.41 0.00 0.00 3.72
2919 7933 2.459934 GGTTTTGCGGAAAGAAGTGTG 58.540 47.619 1.41 0.00 0.00 3.82
2920 7934 1.064952 CGGTTTTGCGGAAAGAAGTGT 59.935 47.619 1.41 0.00 0.00 3.55
2921 7935 1.599419 CCGGTTTTGCGGAAAGAAGTG 60.599 52.381 1.41 0.00 0.00 3.16
2922 7936 0.666374 CCGGTTTTGCGGAAAGAAGT 59.334 50.000 1.41 0.00 0.00 3.01
2923 7937 0.948678 TCCGGTTTTGCGGAAAGAAG 59.051 50.000 0.00 0.00 0.00 2.85
2924 7938 0.948678 CTCCGGTTTTGCGGAAAGAA 59.051 50.000 0.00 0.00 33.53 2.52
2925 7939 0.107081 TCTCCGGTTTTGCGGAAAGA 59.893 50.000 0.00 0.00 33.53 2.52
2926 7940 0.237498 GTCTCCGGTTTTGCGGAAAG 59.763 55.000 0.00 0.00 33.53 2.62
2927 7941 0.464013 TGTCTCCGGTTTTGCGGAAA 60.464 50.000 0.00 0.00 33.53 3.13
2928 7942 0.464013 TTGTCTCCGGTTTTGCGGAA 60.464 50.000 0.00 0.00 33.53 4.30
2929 7943 0.882927 CTTGTCTCCGGTTTTGCGGA 60.883 55.000 0.00 0.00 0.00 5.54
2930 7944 1.574428 CTTGTCTCCGGTTTTGCGG 59.426 57.895 0.00 0.00 0.00 5.69
2931 7945 1.574428 CCTTGTCTCCGGTTTTGCG 59.426 57.895 0.00 0.00 0.00 4.85
2932 7946 1.524008 CCCCTTGTCTCCGGTTTTGC 61.524 60.000 0.00 0.00 0.00 3.68
2933 7947 0.893727 CCCCCTTGTCTCCGGTTTTG 60.894 60.000 0.00 0.00 0.00 2.44
2934 7948 1.358051 ACCCCCTTGTCTCCGGTTTT 61.358 55.000 0.00 0.00 0.00 2.43
2935 7949 1.772979 ACCCCCTTGTCTCCGGTTT 60.773 57.895 0.00 0.00 0.00 3.27
2936 7950 2.122099 ACCCCCTTGTCTCCGGTT 60.122 61.111 0.00 0.00 0.00 4.44
2937 7951 2.928396 CACCCCCTTGTCTCCGGT 60.928 66.667 0.00 0.00 0.00 5.28
2938 7952 3.717294 CCACCCCCTTGTCTCCGG 61.717 72.222 0.00 0.00 0.00 5.14
2939 7953 3.717294 CCCACCCCCTTGTCTCCG 61.717 72.222 0.00 0.00 0.00 4.63
2940 7954 3.339093 CCCCACCCCCTTGTCTCC 61.339 72.222 0.00 0.00 0.00 3.71
2941 7955 3.339093 CCCCCACCCCCTTGTCTC 61.339 72.222 0.00 0.00 0.00 3.36
2966 7980 2.588146 ACGTGATAGCGGTCGGAACG 62.588 60.000 11.83 11.83 45.53 3.95
2967 7981 0.864797 GACGTGATAGCGGTCGGAAC 60.865 60.000 0.00 0.00 35.98 3.62
2968 7982 1.430632 GACGTGATAGCGGTCGGAA 59.569 57.895 0.00 0.00 35.98 4.30
2969 7983 2.475466 GGACGTGATAGCGGTCGGA 61.475 63.158 0.00 0.00 35.98 4.55
2970 7984 2.025727 GGACGTGATAGCGGTCGG 59.974 66.667 0.00 0.00 35.98 4.79
2971 7985 2.352001 CGGACGTGATAGCGGTCG 60.352 66.667 0.00 0.00 35.98 4.79
2972 7986 2.609183 AAGCGGACGTGATAGCGGTC 62.609 60.000 0.00 0.00 35.98 4.79
2973 7987 2.707849 AAGCGGACGTGATAGCGGT 61.708 57.895 0.00 0.00 35.98 5.68
2974 7988 2.104331 AAGCGGACGTGATAGCGG 59.896 61.111 0.00 0.00 35.98 5.52
2975 7989 1.516386 ACAAGCGGACGTGATAGCG 60.516 57.895 0.00 0.00 37.94 4.26
2976 7990 0.457853 TCACAAGCGGACGTGATAGC 60.458 55.000 0.00 0.00 37.23 2.97
2977 7991 1.135373 AGTCACAAGCGGACGTGATAG 60.135 52.381 0.00 0.00 43.59 2.08
2978 7992 0.885879 AGTCACAAGCGGACGTGATA 59.114 50.000 0.00 0.00 43.59 2.15
2979 7993 0.885879 TAGTCACAAGCGGACGTGAT 59.114 50.000 0.00 0.00 43.59 3.06
2980 7994 0.039798 GTAGTCACAAGCGGACGTGA 60.040 55.000 0.00 0.00 40.20 4.35
2981 7995 1.007336 GGTAGTCACAAGCGGACGTG 61.007 60.000 0.00 0.00 40.20 4.49
2982 7996 1.288127 GGTAGTCACAAGCGGACGT 59.712 57.895 0.00 0.00 40.20 4.34
2983 7997 1.445582 GGGTAGTCACAAGCGGACG 60.446 63.158 0.00 0.00 40.20 4.79
2984 7998 1.134560 CTAGGGTAGTCACAAGCGGAC 59.865 57.143 0.00 0.00 35.50 4.79
2985 7999 1.471119 CTAGGGTAGTCACAAGCGGA 58.529 55.000 0.00 0.00 0.00 5.54
2986 8000 0.179108 GCTAGGGTAGTCACAAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
2987 8001 0.179108 GGCTAGGGTAGTCACAAGCG 60.179 60.000 0.00 0.00 31.01 4.68
2988 8002 0.178301 GGGCTAGGGTAGTCACAAGC 59.822 60.000 0.00 0.00 30.24 4.01
2989 8003 1.207329 GTGGGCTAGGGTAGTCACAAG 59.793 57.143 0.00 0.00 34.58 3.16
2990 8004 1.203262 AGTGGGCTAGGGTAGTCACAA 60.203 52.381 0.00 0.00 35.84 3.33
2991 8005 0.412244 AGTGGGCTAGGGTAGTCACA 59.588 55.000 0.00 0.00 35.84 3.58
2992 8006 1.112950 GAGTGGGCTAGGGTAGTCAC 58.887 60.000 0.00 0.00 34.62 3.67
2993 8007 0.708209 TGAGTGGGCTAGGGTAGTCA 59.292 55.000 0.00 0.00 30.24 3.41
2994 8008 1.861982 TTGAGTGGGCTAGGGTAGTC 58.138 55.000 0.00 0.00 0.00 2.59
2995 8009 2.337359 TTTGAGTGGGCTAGGGTAGT 57.663 50.000 0.00 0.00 0.00 2.73
2996 8010 3.713826 TTTTTGAGTGGGCTAGGGTAG 57.286 47.619 0.00 0.00 0.00 3.18
2997 8011 3.053917 GGATTTTTGAGTGGGCTAGGGTA 60.054 47.826 0.00 0.00 0.00 3.69
2998 8012 2.291605 GGATTTTTGAGTGGGCTAGGGT 60.292 50.000 0.00 0.00 0.00 4.34
2999 8013 2.379005 GGATTTTTGAGTGGGCTAGGG 58.621 52.381 0.00 0.00 0.00 3.53
3000 8014 2.379005 GGGATTTTTGAGTGGGCTAGG 58.621 52.381 0.00 0.00 0.00 3.02
3001 8015 2.379005 GGGGATTTTTGAGTGGGCTAG 58.621 52.381 0.00 0.00 0.00 3.42
3002 8016 1.006639 GGGGGATTTTTGAGTGGGCTA 59.993 52.381 0.00 0.00 0.00 3.93
3003 8017 0.252239 GGGGGATTTTTGAGTGGGCT 60.252 55.000 0.00 0.00 0.00 5.19
3004 8018 2.286826 GGGGGATTTTTGAGTGGGC 58.713 57.895 0.00 0.00 0.00 5.36
3023 8037 3.314388 GAAAACGCGGCAGAGGCAG 62.314 63.158 12.47 0.00 43.71 4.85
3024 8038 3.353836 GAAAACGCGGCAGAGGCA 61.354 61.111 12.47 0.00 43.71 4.75
3025 8039 4.103103 GGAAAACGCGGCAGAGGC 62.103 66.667 12.47 0.00 40.13 4.70
3026 8040 1.982073 GATGGAAAACGCGGCAGAGG 61.982 60.000 12.47 0.00 0.00 3.69
3027 8041 1.425428 GATGGAAAACGCGGCAGAG 59.575 57.895 12.47 0.00 0.00 3.35
3028 8042 2.387445 CGATGGAAAACGCGGCAGA 61.387 57.895 12.47 0.00 0.00 4.26
3029 8043 1.906994 TTCGATGGAAAACGCGGCAG 61.907 55.000 12.47 0.00 0.00 4.85
3030 8044 1.961791 TTCGATGGAAAACGCGGCA 60.962 52.632 12.47 0.00 0.00 5.69
3031 8045 1.511254 GTTCGATGGAAAACGCGGC 60.511 57.895 12.47 0.00 33.05 6.53
3032 8046 1.225637 CGTTCGATGGAAAACGCGG 60.226 57.895 12.47 0.00 41.34 6.46
3033 8047 4.319358 CGTTCGATGGAAAACGCG 57.681 55.556 3.53 3.53 41.34 6.01
3036 8050 0.872388 ACAGGCGTTCGATGGAAAAC 59.128 50.000 0.00 0.00 33.05 2.43
3037 8051 0.871722 CACAGGCGTTCGATGGAAAA 59.128 50.000 0.00 0.00 33.05 2.29
3038 8052 1.573829 GCACAGGCGTTCGATGGAAA 61.574 55.000 0.00 0.00 33.05 3.13
3039 8053 2.032634 GCACAGGCGTTCGATGGAA 61.033 57.895 0.00 0.00 0.00 3.53
3040 8054 2.434185 GCACAGGCGTTCGATGGA 60.434 61.111 0.00 0.00 0.00 3.41
3041 8055 3.499737 GGCACAGGCGTTCGATGG 61.500 66.667 0.00 0.00 42.47 3.51
3042 8056 3.853330 CGGCACAGGCGTTCGATG 61.853 66.667 4.71 0.00 46.33 3.84
3050 8064 2.813179 CGTGATAAGCGGCACAGGC 61.813 63.158 1.45 0.00 34.78 4.85
3051 8065 1.421410 GACGTGATAAGCGGCACAGG 61.421 60.000 1.45 5.35 37.32 4.00
3052 8066 0.735978 TGACGTGATAAGCGGCACAG 60.736 55.000 1.45 0.00 42.99 3.66
3053 8067 1.290639 TGACGTGATAAGCGGCACA 59.709 52.632 1.45 0.00 42.99 4.57
3054 8068 4.178861 TGACGTGATAAGCGGCAC 57.821 55.556 1.45 0.00 42.99 5.01
3055 8069 0.108377 ATGTGACGTGATAAGCGGCA 60.108 50.000 1.45 0.00 45.92 5.69
3056 8070 1.004927 GAATGTGACGTGATAAGCGGC 60.005 52.381 0.00 0.00 37.97 6.53
3057 8071 2.267426 TGAATGTGACGTGATAAGCGG 58.733 47.619 0.00 0.00 0.00 5.52
3058 8072 3.306973 ACATGAATGTGACGTGATAAGCG 59.693 43.478 0.00 0.00 40.03 4.68
3059 8073 4.548916 CGACATGAATGTGACGTGATAAGC 60.549 45.833 0.00 0.00 41.95 3.09
3060 8074 4.548916 GCGACATGAATGTGACGTGATAAG 60.549 45.833 0.00 0.00 41.95 1.73
3061 8075 3.305897 GCGACATGAATGTGACGTGATAA 59.694 43.478 0.00 0.00 41.95 1.75
3062 8076 2.857748 GCGACATGAATGTGACGTGATA 59.142 45.455 0.00 0.00 41.95 2.15
3063 8077 1.660607 GCGACATGAATGTGACGTGAT 59.339 47.619 0.00 0.00 41.95 3.06
3064 8078 1.067693 GCGACATGAATGTGACGTGA 58.932 50.000 0.00 0.00 41.95 4.35
3065 8079 0.095245 GGCGACATGAATGTGACGTG 59.905 55.000 0.00 0.00 41.95 4.49
3066 8080 1.019278 GGGCGACATGAATGTGACGT 61.019 55.000 0.00 0.00 41.95 4.34
3067 8081 1.705337 GGGGCGACATGAATGTGACG 61.705 60.000 0.00 0.62 41.95 4.35
3068 8082 0.676466 TGGGGCGACATGAATGTGAC 60.676 55.000 0.00 0.00 41.95 3.67
3069 8083 0.392863 CTGGGGCGACATGAATGTGA 60.393 55.000 0.00 0.00 41.95 3.58
3070 8084 0.392863 TCTGGGGCGACATGAATGTG 60.393 55.000 0.00 0.00 41.95 3.21
3071 8085 0.107508 CTCTGGGGCGACATGAATGT 60.108 55.000 0.00 0.00 45.16 2.71
3072 8086 1.442526 GCTCTGGGGCGACATGAATG 61.443 60.000 0.00 0.00 0.00 2.67
3073 8087 1.153086 GCTCTGGGGCGACATGAAT 60.153 57.895 0.00 0.00 0.00 2.57
3074 8088 1.913951 ATGCTCTGGGGCGACATGAA 61.914 55.000 0.00 0.00 34.52 2.57
3075 8089 2.369633 ATGCTCTGGGGCGACATGA 61.370 57.895 0.00 0.00 34.52 3.07
3076 8090 2.184830 CATGCTCTGGGGCGACATG 61.185 63.158 0.00 0.00 34.52 3.21
3077 8091 2.191375 CATGCTCTGGGGCGACAT 59.809 61.111 0.00 0.00 34.52 3.06
3078 8092 4.783621 GCATGCTCTGGGGCGACA 62.784 66.667 11.37 0.00 34.52 4.35
3079 8093 4.783621 TGCATGCTCTGGGGCGAC 62.784 66.667 20.33 0.00 34.52 5.19
3080 8094 4.478371 CTGCATGCTCTGGGGCGA 62.478 66.667 20.33 0.00 34.52 5.54
3084 8098 4.790962 ACCGCTGCATGCTCTGGG 62.791 66.667 20.33 16.31 40.11 4.45
3085 8099 3.200593 GACCGCTGCATGCTCTGG 61.201 66.667 20.33 18.61 40.11 3.86
3086 8100 3.561213 CGACCGCTGCATGCTCTG 61.561 66.667 20.33 10.18 40.11 3.35
3087 8101 3.763356 TCGACCGCTGCATGCTCT 61.763 61.111 20.33 0.00 40.11 4.09
3088 8102 3.558411 GTCGACCGCTGCATGCTC 61.558 66.667 20.33 9.76 40.11 4.26
3089 8103 3.670637 ATGTCGACCGCTGCATGCT 62.671 57.895 20.33 0.00 40.11 3.79
3090 8104 2.753966 AATGTCGACCGCTGCATGC 61.754 57.895 14.12 11.82 38.57 4.06
3091 8105 1.061411 CAATGTCGACCGCTGCATG 59.939 57.895 14.12 0.00 0.00 4.06
3092 8106 0.462581 ATCAATGTCGACCGCTGCAT 60.463 50.000 14.12 0.00 0.00 3.96
3093 8107 1.079197 ATCAATGTCGACCGCTGCA 60.079 52.632 14.12 0.00 0.00 4.41
3094 8108 1.349627 CATCAATGTCGACCGCTGC 59.650 57.895 14.12 0.00 0.00 5.25
3095 8109 1.349627 GCATCAATGTCGACCGCTG 59.650 57.895 14.12 7.66 0.00 5.18
3096 8110 1.815421 GGCATCAATGTCGACCGCT 60.815 57.895 14.12 0.00 0.00 5.52
3097 8111 1.815421 AGGCATCAATGTCGACCGC 60.815 57.895 14.12 5.91 37.51 5.68
3098 8112 2.009108 CAGGCATCAATGTCGACCG 58.991 57.895 14.12 1.43 37.51 4.79
3099 8113 1.723870 GCAGGCATCAATGTCGACC 59.276 57.895 14.12 0.00 37.51 4.79
3100 8114 1.083806 TCGCAGGCATCAATGTCGAC 61.084 55.000 9.11 9.11 37.51 4.20
3101 8115 0.179076 ATCGCAGGCATCAATGTCGA 60.179 50.000 0.00 0.00 37.51 4.20
3102 8116 0.659427 AATCGCAGGCATCAATGTCG 59.341 50.000 0.00 0.00 37.51 4.35
3103 8117 2.097954 TCAAATCGCAGGCATCAATGTC 59.902 45.455 0.00 0.00 0.00 3.06
3104 8118 2.093890 TCAAATCGCAGGCATCAATGT 58.906 42.857 0.00 0.00 0.00 2.71
3105 8119 2.456989 GTCAAATCGCAGGCATCAATG 58.543 47.619 0.00 0.00 0.00 2.82
3106 8120 1.406539 GGTCAAATCGCAGGCATCAAT 59.593 47.619 0.00 0.00 0.00 2.57
3107 8121 0.810648 GGTCAAATCGCAGGCATCAA 59.189 50.000 0.00 0.00 0.00 2.57
3108 8122 0.322366 TGGTCAAATCGCAGGCATCA 60.322 50.000 0.00 0.00 0.00 3.07
3109 8123 0.379669 CTGGTCAAATCGCAGGCATC 59.620 55.000 0.00 0.00 0.00 3.91
3110 8124 0.035152 TCTGGTCAAATCGCAGGCAT 60.035 50.000 0.00 0.00 0.00 4.40
3111 8125 0.955428 GTCTGGTCAAATCGCAGGCA 60.955 55.000 0.00 0.00 0.00 4.75
3112 8126 1.796796 GTCTGGTCAAATCGCAGGC 59.203 57.895 0.00 0.00 0.00 4.85
3113 8127 0.389817 TCGTCTGGTCAAATCGCAGG 60.390 55.000 0.00 0.00 0.00 4.85
3114 8128 0.994995 CTCGTCTGGTCAAATCGCAG 59.005 55.000 0.00 0.00 0.00 5.18
3115 8129 0.601057 TCTCGTCTGGTCAAATCGCA 59.399 50.000 0.00 0.00 0.00 5.10
3116 8130 1.272781 CTCTCGTCTGGTCAAATCGC 58.727 55.000 0.00 0.00 0.00 4.58
3117 8131 1.469940 CCCTCTCGTCTGGTCAAATCG 60.470 57.143 0.00 0.00 0.00 3.34
3118 8132 1.740718 GCCCTCTCGTCTGGTCAAATC 60.741 57.143 0.00 0.00 0.00 2.17
3119 8133 0.250513 GCCCTCTCGTCTGGTCAAAT 59.749 55.000 0.00 0.00 0.00 2.32
3120 8134 1.671742 GCCCTCTCGTCTGGTCAAA 59.328 57.895 0.00 0.00 0.00 2.69
3121 8135 2.636412 CGCCCTCTCGTCTGGTCAA 61.636 63.158 0.00 0.00 0.00 3.18
3122 8136 3.062466 CGCCCTCTCGTCTGGTCA 61.062 66.667 0.00 0.00 0.00 4.02
3123 8137 2.750637 TCGCCCTCTCGTCTGGTC 60.751 66.667 0.00 0.00 0.00 4.02
3124 8138 3.063084 GTCGCCCTCTCGTCTGGT 61.063 66.667 0.00 0.00 0.00 4.00
3125 8139 4.180946 CGTCGCCCTCTCGTCTGG 62.181 72.222 0.00 0.00 0.00 3.86
3126 8140 4.838486 GCGTCGCCCTCTCGTCTG 62.838 72.222 5.75 0.00 0.00 3.51
3128 8142 4.838486 CAGCGTCGCCCTCTCGTC 62.838 72.222 14.86 0.00 0.00 4.20
3130 8144 4.838486 GTCAGCGTCGCCCTCTCG 62.838 72.222 14.86 0.00 0.00 4.04
3131 8145 1.654954 TTAGTCAGCGTCGCCCTCTC 61.655 60.000 14.86 0.54 0.00 3.20
3132 8146 1.677966 TTAGTCAGCGTCGCCCTCT 60.678 57.895 14.86 11.74 0.00 3.69
3133 8147 1.516603 GTTAGTCAGCGTCGCCCTC 60.517 63.158 14.86 4.30 0.00 4.30
3134 8148 2.572284 GTTAGTCAGCGTCGCCCT 59.428 61.111 14.86 10.11 0.00 5.19
3135 8149 2.879462 CGTTAGTCAGCGTCGCCC 60.879 66.667 14.86 2.02 0.00 6.13
3136 8150 3.542742 GCGTTAGTCAGCGTCGCC 61.543 66.667 14.86 0.00 40.83 5.54
3142 8156 1.261097 GAGAAGTCGCGTTAGTCAGC 58.739 55.000 5.77 0.00 0.00 4.26
3143 8157 2.510874 CTGAGAAGTCGCGTTAGTCAG 58.489 52.381 5.77 9.68 0.00 3.51
3144 8158 1.199327 CCTGAGAAGTCGCGTTAGTCA 59.801 52.381 5.77 3.43 0.00 3.41
3145 8159 1.897641 CCTGAGAAGTCGCGTTAGTC 58.102 55.000 5.77 0.00 0.00 2.59
3146 8160 0.109226 GCCTGAGAAGTCGCGTTAGT 60.109 55.000 5.77 0.00 0.00 2.24
3147 8161 1.134530 CGCCTGAGAAGTCGCGTTAG 61.135 60.000 5.77 0.00 39.78 2.34
3148 8162 1.154093 CGCCTGAGAAGTCGCGTTA 60.154 57.895 5.77 0.00 39.78 3.18
3149 8163 2.430921 CGCCTGAGAAGTCGCGTT 60.431 61.111 5.77 0.00 39.78 4.84
3154 8168 2.507324 GGCGACGCCTGAGAAGTC 60.507 66.667 31.30 0.96 46.69 3.01
3198 8212 3.414136 TTTGGCCACTGCTGACGGT 62.414 57.895 3.88 0.00 37.74 4.83
3199 8213 2.594303 TTTGGCCACTGCTGACGG 60.594 61.111 3.88 0.00 37.74 4.79
3200 8214 2.949106 CTTTGGCCACTGCTGACG 59.051 61.111 3.88 0.00 37.74 4.35
3201 8215 1.737355 TTGCTTTGGCCACTGCTGAC 61.737 55.000 24.15 4.78 37.74 3.51
3202 8216 1.455402 TTGCTTTGGCCACTGCTGA 60.455 52.632 24.15 13.53 37.74 4.26
3203 8217 1.300388 GTTGCTTTGGCCACTGCTG 60.300 57.895 24.15 7.73 37.74 4.41
3204 8218 2.501602 GGTTGCTTTGGCCACTGCT 61.502 57.895 24.15 0.00 34.92 4.24
3205 8219 2.029518 GGTTGCTTTGGCCACTGC 59.970 61.111 19.12 19.12 34.92 4.40
3206 8220 1.809567 GAGGGTTGCTTTGGCCACTG 61.810 60.000 3.88 1.46 34.92 3.66
3207 8221 1.531602 GAGGGTTGCTTTGGCCACT 60.532 57.895 3.88 0.00 34.92 4.00
3208 8222 2.574018 GGAGGGTTGCTTTGGCCAC 61.574 63.158 3.88 0.00 37.74 5.01
3209 8223 2.203625 GGAGGGTTGCTTTGGCCA 60.204 61.111 0.00 0.00 37.74 5.36
3210 8224 3.373565 CGGAGGGTTGCTTTGGCC 61.374 66.667 0.00 0.00 37.74 5.36
3211 8225 4.056125 GCGGAGGGTTGCTTTGGC 62.056 66.667 0.00 0.00 39.26 4.52
3212 8226 2.597217 TGCGGAGGGTTGCTTTGG 60.597 61.111 0.00 0.00 0.00 3.28
3213 8227 2.644992 GTGCGGAGGGTTGCTTTG 59.355 61.111 0.00 0.00 0.00 2.77
3214 8228 2.597510 GGTGCGGAGGGTTGCTTT 60.598 61.111 0.00 0.00 0.00 3.51
3215 8229 3.884774 TGGTGCGGAGGGTTGCTT 61.885 61.111 0.00 0.00 0.00 3.91
3216 8230 4.643387 GTGGTGCGGAGGGTTGCT 62.643 66.667 0.00 0.00 0.00 3.91
3227 8241 3.357079 CCTCCTGTTGCGTGGTGC 61.357 66.667 0.00 0.00 46.70 5.01
3228 8242 3.357079 GCCTCCTGTTGCGTGGTG 61.357 66.667 0.00 0.00 0.00 4.17
3229 8243 4.988598 CGCCTCCTGTTGCGTGGT 62.989 66.667 0.00 0.00 45.43 4.16
3234 8248 3.793144 CGCTTCGCCTCCTGTTGC 61.793 66.667 0.00 0.00 0.00 4.17
3235 8249 3.121030 CCGCTTCGCCTCCTGTTG 61.121 66.667 0.00 0.00 0.00 3.33
3241 8255 4.882396 GAGGAGCCGCTTCGCCTC 62.882 72.222 10.09 10.09 43.82 4.70
3251 8265 4.959596 GCATCTCGCGGAGGAGCC 62.960 72.222 6.13 0.00 33.98 4.70
3252 8266 4.212913 TGCATCTCGCGGAGGAGC 62.213 66.667 6.13 10.51 46.97 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.