>input_sequence_55874
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-----------------------ATGGCAGCAGCCGCCAGTCTCAAGCTCGCCGCCCTGTGCCTG------CTCTTCCTC
GTCGCCGTCTCCTCCCTCCCCCTGCTCGCCCGCGCCGAGTGCGAGTGCGAGGCCGGCGGCGAGGAGGAGGAGCAGGACAA
GGCGGGCTCGCTGAGGCTCAGGATCATCGCCGTCTTCTGCATCCTCGTGGCCAGCGCGGCGGGCTGCGCCATCCCGTCGC
TGGGCCGGAGGTTCCCGGCGCTGAGCCCGGACAGGGACCTCTTCTTCGGCGTCAAGGCCTTCGCGGCGGGGGTCATCCTC
GCCACCTCCTTCGTGCACATCCTCCCGGAGGCCTTCGAGCGGCTCGGCTCGCCCTGCCTCGTCGACGGGCCGTGGCAGAA
GTTCCCGTTCGCCGGCCTCGTCGCCATGCTCGCGGCCATCGCCACGCTCGTCGTCGACACCATCGCCACGGGCTACTTCC
AGCGCGCCGCGCACGCCAAGAAGGCCGCGGCCGTCGTCGGGGCCGACGACGTGGAGGCCACGCCGGCCCATCACGCGCAC
GTCGGTCACTCCCACGGCGTGTCGGCCGTCGTCGCGTCATCGGCGGCGGCGTCCGACGACGGCGGCGCGCAGCTCATCCG
CCAGCGTGTCATCTCGCAGGTGCC----------GATCCATGCA-----TCCATTC------------------------
------------------CATTTCATACTACCGCAGTGACTAAGCTGTTGCATCGATCGACGCTTACTGTTTGTACATGC
ATGTACGCG-----------------------------------------------------------------------
--------------------TGCTTGATCTGA----AGGTGCTGGAGCTGGGGATCATAGTGCACTCGGTGATCATCGGC
ATGTCTCTCGGCGCCTCCCAGAGCACCAGCACGATCAGACCACTCGTGGTCGCGCTAACTTTCCATCAGTTCTTCGAGGG
GATAGGGCTCGGAGGATGCATCGTTCAGGTACGTACATAG----------------------------------------
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--------------------------------------------------------------------------CAGGTC
CGTAAACTGA----------------------------------------------------------------------
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----------------------------------------GGTAGATAATGCAGGCTGACCGTCGGTAAATGAATCAAAC
TTCTG----ACAGGCCAAATTCCGCCTGAAGTCCGTGCTGCTGATGGCGCTCTTCTTCTCACTCACCACGCCGGTCGGCG
TCGTGATCGGCATCGGGATATCCTCCGTCTACGACGAGAACAGCCCCAACACCCTGATCATCCAAGGGATGCTCAGCGCC
GCCACCGCCGGAATCCTCAACTACATGGCCCTCGTCGACCTCCTCGCGGAAGACTTCATGAACCCTAGGGTGCAGGGCAA
CGGAAGGCTGCAGGTCATCGTAAACCTCTCCTTGCTGCTTGGGACGGCTCTCATGTCCATGCTTGCCATATGGGCCTGA-
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>chr1A_1_TraesCS1A01G297400
TCCAG---------------------------------------------------------------------------
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---------------TTACTTGGTCGAACAAAGGCACCACGAGAATTTGTTTTTACTTATCCTAGATAGGTTACAATCCT
ATGACCAGATTATCCTTCTGCTAGTTTTATATGCTTGTTAATCATATCTGCATACACAAATGACGGCACTCTTGCCCATG
TGAGATGTGACGGCACCGGCGGGAAAATTGCAGCCCATCTTGTTGGATCTCCAATGTAGTGTGGAGTGAGCCCGAGAAAT
CCGAGGCGTGAATAGACTATGCTACCTG--------GTAGATCAATAGCTTGCGAAACACAGTCAACCATGTCATGCCGT
GCCCTCACGGTGTCGACACCCTCACTGCATCTCAACAATCTTTTGTTTTCTGCACAGATCACATCTCAGGAGAAAGAGTA
TTACTGCACCAGCACAGGCTGCGGCCTTGACCAGATGCCCAAGTTGACATTGGAACTTTGAAAGATGCTCAAGTTG-AGC
ATTGTTAACTCTAGGGAAGCCATTTGTCCAACCG-----TCAGTGGCTCCAAAGCCATCCAATCATGGCTCAGTAGGAAA
GTGTGAAGC-GGCGGAAGAGAGCTGGTGCTGCATCTGCAACTCTGCATGCATGGTGGCCAACTGCGGGCGTCTTGGACGC
AGAAATGGCGAGAGATCGAAAGTGCTTA--GCATCCATAACAAAAGGGTAAGGTGGTGCGCACATAATATTACCCAAAAG
TGGCGCGCTGCAACCT------------------CTCATGCACCACATGCGTATATACTGCTAGATAGATAGATATATAG
ATGAAAAGTTGCATGACGTGAATGGC------AACTCTAAAGTTTC-CCCCTGTTGACATTGGGAATATCGGCTTGCTGT
TCATAATATCCGGTTCTTGAGAAAGTCTCCACGCGAATCGGATACGTTCACACCGATATAATATCTCATTTTACTAGGTA
CA-CTGGCTTGCAGCTCTGTA-CTGGTATATAGGC---------------------------------------------
--------------------------------------GTGCGTACGTCGTCTCTCCTGCCGCTCATCACCG------TT
GTTTAGCCTCCGACGACTAGACCATGGCAGCAGCCGCCAGTCTCAAGCTCGCCGCCCTGTGCCTG------CTCTTCCTC
GTCGCCGTCTCCTCCCTCCCCCTGCTCGCCCGCGCCGAGTGCGAGTGCGAGGCCGGCGGCGAGGAGGAGGAGCAGGACAA
GGCGGGCTCGCTGAGGCTCAGGATCATCGCCGTCTTCTGCATCCTCGTGGCCAGCGCGGCGGGCTGCGCCATCCCGTCGC
TGGGCCGGAGGTTCCCGGCGCTGAGCCCGGACAGGGACCTCTTCTTCGGCGTCAAGGCCTTCGCGGCGGGGGTCATCCTC
GCCACCTCCTTCGTGCACATCCTCCCGGAGGCCTTCGAGCGGCTCGGCTCGCCCTGCCTCGTCGACGGGCCGTGGCAGAA
GTTCCCGTTCGCCGGCCTCGTCGCCATGCTCGCGGCCATCGCCACGCTCGTCGTCGACACCATCGCCACGGGCTACTTCC
AGCGCGCCGCGCACGCCAAGAAGGCCGCGGCCGTCGTCGGGGCCGACGACGTGGAGGCCACGCCGGCCCATCACGCGCAC
GTCGGTCACTCCCACGGCGTGTCGGCCGTCGTCGCGTCATCGGCGGCGGCGTCCGACGACGGCGGCGCGCAGCTCATCCG
CCAGCGTGTCATCTCGCAGGTGCC----------GATCCATGCA-----TCCATTC------------------------
------------------CATTTCATACTACCGCAGTGACTAAGCTGTTGCATCGATCGACGCTTACTGTTTGTACATGC
ATGTACGCG-----------------------------------------------------------------------
--------------------TGCTTGATCTGA----AGGTGCTGGAGCTGGGGATCATAGTGCACTCGGTGATCATCGGC
ATGTCTCTCGGCGCCTCCCAGAGCACCAGCACGATCAGACCACTCGTGGTCGCGCTAACTTTCCATCAGTTCTTCGAGGG
GATAGGGCTCGGAGGATGCATCGTTCAGGTACGTACATAG----------------------------------------
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--------------------------------------------------------------------------CAGGTC
CGTAAACTGA----------------------------------------------------------------------
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----------------------------------------GGTAGATAATGCAGGCTGACCGTCGGTAAATGAATCAAAC
TTCTG----ACAGGCCAAATTCCGCCTGAAGTCCGTGCTGCTGATGGCGCTCTTCTTCTCACTCACCACGCCGGTCGGCG
TCGTGATCGGCATCGGGATATCCTCCGTCTACGACGAGAACAGCCCCAACACCCTGATCATCCAAGGGATGCTCAGCGCC
GCCACCGCCGGAATCCTCAACTACATGGCCCTCGTCGACCTCCTCGCGGAAGACTTCATGAACCCTAGGGTGCAGGGCAA
CGGAAGGCTGCAGGTCATCGTAAACCTCTCCTTGCTGCTTGGGACGGCTCTCATGTCCATGCTTGCCATATGGGCCTGAG
ATATCGTCCTCACCTGAAAAAA-AA---TCGTTTTGAAGAATTTCTCTTGTTCTTGTTCTTGGTTCAGTCATCTTGTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCTAGTAAAA
ATGTATACATGTATAGTAGATCAAACTATCAAACTACATGGGGGTCTGGTCTTCCCTTCTTAGGGCATTTTGAACGCTGA
CCCTCAAATTGCCCACAAACGTCCGGACCGCGCGATTTAGACGTGTTCTGCCGTCCAACACGGTCATGTATCGGTCCGTT
GGGCCGTCCGCACACACTTCTTTCCGCAAAACCGGAGACAAGGGGGTGGGGGGTCCGGGCGTTCCGACCGCTATCACGTC
CGCTTGTGACTACCCTAGCCCACTCAAAAATCCCCCCTGCCTCTGCCGCGTTTTCCATCGAACGCCTGTGCCGCTTATCA
CGTCACATTCATGTCGCCCCAGAGCATGCAGCGGTCGACATTGATGCCTGCGATTTGACCAGACGAGAGGGCGACGCTGA
CTAACGCGACTTCTCAGGCGTCGCCGCCAGGGCTCCGCTGGCTTCGCCGGCACCGTCAGCAGTGGCCAAAGCAACCCTCC
GCACCACGCAACAGGAGGCGAAGCGGCTCCTCCGCGAGATGCA
>chr1D_1
GCATCCATAACAAAAGGGTAAGGTGGTGCGCACATAATATTTCCCAAAAGTGGCGCGTTGGTAAGTATATAACTGCAAGT
TCATGCACCACATGCGTATATACTGCTAGATAAAATGAAAAGTTGCATGACGTGAATGGCAACTCTAAAGCTTTGCCCCT
GTTGACATTGGGAATATCGGCTAGCTGTTCATAATACCCGGTTCTTGAGAAAGTCTCCATGCGAATCGGATACGTTCACA
CCAATATAATATCTCATTTTATTAGGTACACTGGCTCGTAGCTCTATACTGGTATATAGGCATGCGTATGATTATGATTT
TCAATTCAACGTGTCATTTTGTTACAAATACACGGTGGTAAATATAGGTCATACTATCAGACGTGTTACCAAGTTGTATT
TCGATCAAACTAAGGCAGATGACGAGTTGGATAATATTATCATTGAGTTGACCATCCGATTAATGACTTTTTGTGCCATT
GTTATATACTATTTGCTATATGAAGAAAAAAATTGCGTCAGGGGAGGCTTGGAAAACAAAACCAGACGTGCTACTGAGTT
GCATTTCGATCAAAGAGACATGACGAGTTCAGTAATCTTATCGCAGTGCCAACCATGTTATAACTGTTTTTTCGCTGTTA
CATATTTGTCGCATCTGTTCACGCAAATGACAACATTTTTACATAGATGGAGGCCTAGTAGCATTGAAAAATTGTCTTCT
CAAATATGTAGTTTCCATTGACTGAAGATGATTAAGACCAATCAAATGCAGTCGGGATTTATTAATACCATGTCTATCCA
ACAAAGGTGGTTCAAATATGATTTACATCGTGAAATGTAACAAGGTGAAAGTTTTCTAGAATCTCCGACATGTGACTTTG
TTACAAATAAATATATGGGGGGTTTGAAAATAGAGTCCACACTTAAAATATAGTAAAGTCGGAAGTGCCAAGTTCATAAC
TTGATCAAATGAAAGCATAAGACGAATTGAGTACTCTTATCTTACCGTAGATCCAACAATCATTATATTATCCGGCTTTT
ATATGTATTATGCTAAATGACGACATTTTGCTAATATGAGACTTGGTAAGGAGATGGCTTCTTGAATATTCTCGACTGCC
TATATCTTTGTGGTACTCCATGAAGATCTTCCTCTAATATAAAATCTATACCAGTCTTTGTATCTCTATACTCTCTTTAT
CTATATCTATATCTGCATATCTATATATCTATATATGTATATCTATCTATATATCTCTACTTGTGACTTTAAAAATAAGT
ATAGTTCATTTTCCTGTAGGCTGAGACCTTCGTCCAACCTTCCATATTTGTTCTGAGCATTATTCCTTGATAATAACCTT
AATTATCCCACCTTCTATTGACTTACCAGATGAACTTATGTTTTATTTGGTAAGTCAACAAGAGTATTTAGGGCAGGATT
GGGTAACATTTATTTACACGATCACATTAATATAGGTAGTTAAATTGTGTGCTAATATACTACTACCTCCGTCCCATAAT
ATAAGAACGTTTTTCGAGCTAATATAGTTTGAGAAATGTTCTTATATTATGGGACAGAGGGAGTAGTATATTACTCCCTC
CGTCCGAAAATACTTGTCATTAAAATGGATAAATTTTCTGTTTCACCCTTTCCTTTGTCCAACTTCTCTATATACGTTCC
CTTTTGCTTCTTTTGTATGACGTTTTTCCTCTCATCTCTGAATTTTCTCCCACGGGTTTTCCCTAAACCAACTCGATTCT
CCCACGTCTTACTAACTTACCAAAATAAAATATATTTTTCTTCGGTAAGTGAATATATTCTTACTCCCTCCATTCCTTTA
TGTAAGTTGTGTTTCTGGCACGATAAGCAAGGAACGGAATTTTAGAGAATTTGGGACCAAATGTTGGTTAGTGACAGGTG
AAGGAAGATATACATGCAATCGGGAGAGAAATACTTTCTTTCTTTTGCTATAAGGAGACATACATGCAATCGGGGGAGAT
ATACTTTTTATATTTTAGGGCTAAGAAGGAATTACGAGGAATTGAAAAAATGCACCTTACGCTATGAAATTTTATCAGAA
AACAAATGTACCTTATATAAAGGATTGGATGGAGTACCAAATAATTGTTGAATAATAAGACGACGGCTAAATCATGGTGA
TTGTATATAAAAACTTTCTACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGGATAAAAAAAGGTGTATCTAGAACTA
AAATACATCTAGATACATCCCCTTTTATTCATCTTGATGACAAGTATTTTCGGACGGAGGGAGTATAATTTTAGCGCATA
AATGTGATAATAAGCCTACAGTCACGGGTCAGTCTAATAATGCTTATGCTCACGTTGCAACGCACGTGCAATTATCTAGT
GTAGTTCAAATATGTGGAATTCTATACCTGATATATGTGAGAAAGTACTCTTTTGGCCCCGAACTCAAATGAACTTGTGA
TGACCAGTTAAACTCAGAAAAAATGAAAATGAATCCAAACAATTCTGATTTTTCTGTTGCAAACATTGATAAATGTTTTG
AGTGCTTGTAAATTTCATCATGAAATGACATTTGTGGAATATGTGGCAAAAAAAAACAGAATCATCAATCTAAAATGCTT
TTGGAAATAACATTTTTGAGTATCAATTTCTTTTTTGCCACGGCTTCTACAAATGTTCTTTCAAGATGAAACTTTGCAAT
CATTGACAACATTTGCCAACGTTAGTCACAAAAAAAAAATTAGAATTTTCCAATTTTACTGTTCACCCGAGTTCATATGA
GCTCGAGCTAAGAAACTTCATGTCCATATAATATGGTGCATTCATGATTTACGCATAAATAAGGTTGTGATACTTTTGAA
ACCTATCCAATGTGCCAGTTTGTTACAAGTACTACTCTCTTCAATCCATATTAATTACCGCTGATTTAGTACAAGGCGTG
CTGCCAGGTTTCCAATTACTAGATCGAACAAATGCACCGCGAGAATTTGTGTATACTTATCCTAGATAGGCTGCAATCCT
ATGATCAGATTAT-CTTTTGCTGGTTTTATATGCTTGTTAATCATATGTGCATACACAAATGACGGCACTCTTGCCCATG
TGA-------CGGCACCAGCGGGAAAATTGCAGCCGATCAAGTTGGATCTCCAATGTAGTGTGAAGTGAGCCCGAGAAAT
CCGATGCGTGAATAGACTATACTACTACTACTACTAGTAGATCAATAGCTTGCGAAACAAAGTCAACCATGTCATGCCGT
GCCCTCACGGTGTCGACACCCTTAGTGCATCTCAACAATCTTTTGTTTTCTGCACAGATCAGATCTCAGGAGAAAGAGTA
TTACTGCACCAGTACAGGCTGCGGCGTTGACCGGATGCTCAAGTTGGCATTGAAACTTTGAAAGATGCTCAAGTTGGAGC
ATTATAAACTCTAGGGAAGCCATTTGTTCAACCGTCAGATCAGTGGCTCCAAAGCCATCCAATCATGCCTCACTAGGAAA
GTGTGAAGC-GGCGGAAGAGAGGTGGTGCTGCATCTGCAACTCTGCATGCATGGTGGC-AACTGCGGGCATCTTGGACGC
ACAAATGGCGAGAGGTCGACCGGAGAAAGTGCATCCATAACAAAAGGGTAAGGTGGTGCGCACATAATATTACCCAAAAG
TGGCGCGCTGGTAAGTA-------TAACTGCAAGTTCATGCACCACATGCGCATATACTGCTAGATAG--------ATAG
ATGAAAAGTTGCATGACGTGAATGGC------AACTCTAAAGCTTTGCCCCTGTTGACATTGGGAATATCGGCTTGCTGT
TCATAATATCCGGTTCTTCAGAAAGTCTCTGCGCGAATCGGATACGTCCACACCG--ATAATATCTCATTTCATTAGGTA
CA-CTGGCTCGCAGCTCTGTGTCTGGTATATAGGC---------------------------------------------
--------------------------------------GTGCGTATGTCGTCTCTCCTGCCGCTCATCACCGTTGTTCTT
GTTTCGCCCCCGACGACTAGACCATGGCAGCAGCAGCCGGTCTCAAGCTCGCCGCCCTGTGCCTC------CTCCTCGTC
GCCGTCGTCTCCTCCCTCCCTCTGCTCGCGCGTGCAGAGTGCGAGTGCGAGGCCGGCGGCGAGGAGGAGGAGCAGGACAA
GGCGGGCTCGCTGAGGCTCAGGATCATCGCCGTCTTCTGCATCCTCGTGGCCAGCGCGGCGGGCTGCGCCATCCCGTCGC
TGGGCCGGAGGTTCCCTGCGCTGAGCCCGGACAGGGACCTCTTCTTCGGCGTCAAGGCCTTCGCGGCGGGGGTCATCCTC
GCCACCTCCTTCGTGCACATCCTCCCGGAGGCCTTCGAGCGGCTCGGCTCGCCGTGCCTCGTCAGCGGGCCGTGGCAGAA
GTTCCCGTTCGCCGGCCTCGTCGCCATGCTCGCGGCCATCGCCACGCTCGTCGTCGACACCATCGCCACGGGCTACTTCC
GGCGCGCCGCGCACGCCAAGAAGGCCGCGGCCGTCGTCGGGGCCGACGACGTGGAGGCCATGTCGGCTCATCACGCGCAC
GTCGGTCACTCCCACGGCGTGTCAGCCGTCGTCGCGTCATCGGCGGCGGCGTCCGACGACGGCGGCGCGCAGCTCATCCG
CCAGCGTGTCATCTCGCAGGTGCC----------GATCGATGCA-----TCCATTC------------------------
-----------------------CATACTACCATAGTGACTAAACCGTTGCATCGA----CGCTTAATGTTTGTGCATGC
ATGTACGCG-----------------------------------------------------------------------
--------------------TGCTTGATCTGA----AGGTGCTGGAGCTGGGGATCATAGTGCACTCGGTGATCATCGGC
ATGTCTCTAGGCGCATCCCAGAGCACCAGCACGATCAGACCACTCGTGGTCGCGCTAACTTTCCACCAGTTCTTCGAAGG
GATAGGGCTCGGAGGATGCATCGTTCAGGTACGTACGTAG----------------------------------------
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CGTAAACTGA----------------------------------------------------------------------
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----------------------------------------GGTAGATAATGCAGGCTGACCGTCGGTAAATGAATGAAAC
TTCTG----GCAGGCCAAGTTCCGCCTGAAGTCCGTGCTGCTGATGGCGCTCTTCTTCTCACTCACCACGCCGGTTGGCG
TCGTGATCGGCATCGGGATATCCTCCGTCTACGACGAGAACAGCCCCAACACCCTGATCATCCAAGGGATCCTCAGCGCC
GCCGCCGCCGGAATCCTCAACTACATGGCCCTCGTCGACCTCCTCGCCGAAGACTTTATGAACCCTAGGGTGCAGGGCAA
CGGAAGGCTGCAGGTCATCGTAAACCTCTCCTTGCTGCTTGGGACGGGTCTCATGTCAATGCTTGCCATATGGGCCTGAG
ATATCGTCCTCACCTGAAAAAAAAA---TCGTTTTGAAGAATTTTTCTTGTTCTTGTTCTTGGTTCAGTCATCTTGTGGG
GGGCATAGTGAGGATTTATCTTTCTTTTTCTTGTTG--------------------------------------------
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-------------------------------------------------------------------CTTGCTAGTAAAA
ATGTATACATGTATAGTAGATCAAACTATCAAACTACATGGGG-TCTGGTCTTCTCTCCTTAGAGCATCTACAACCTGAC
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>chr1B_252
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------------------------------CTACTAGTAGATCAATAGCTTGCGAAACACAGTCAACCATGTCACGCCGT
GCCCTCACGGTGTCGACACCCTTAGTGCATCTCAACAATCTTTTGTTTTCTGCACAGATCAGATCTCAGGAGAAAGAGTA
TCACTGCACCAGTACAGGCTGCGGCGTTGACCGGATGCTCAAGTTGACATTGAAACTTTGAAAGATGCTTAAGTTGGAGC
ATTATTAACTCTAGGGAAGCCATTTGTTCAACCATCGGATCAGTGGCTCCAAAGCCATCCAATCATGCCTCGGTAGGGAA
GTGTGAAGC-GGCGGAAGGGATGTGGTGCT-------------------------------------GCATCTTGGACGC
AGAAATGGCGAGAGGTCGACCAGAGAAAGTGCATCCACAACAAAAGGGCAAGGTGGTGCGCACATAATATTACCCAAAAG
TGGCGCGCTGGTAAGTGAA------AACTGCAACCTCATGCACCACATGCATATATACTGCTAGCT-----------TAG
ATGAAAAGTTGCATGACGTGAACGCAACTCTAAAGTCTAAAGCTTCTCCCCGGTTGACATTGGGAATATCGGCTT-----
---------------CTTGAGAAAGTCTCTGCGCGA-TCGGATACGTTCACGCCG--ATAATATCTCATTTTATTAGGTA
CA-CTGGCTCGCAGCTCTGTGTCCGGCATATATGC---------------------------------------------
--------------------------------------GCGCGTACGTCGTCTCTCCAGCTGCTCATCGCCG------TT
GTTTCGCCCCCGACGACTAGACCATGGCAGCGGCCGCCAGTCTCAAGCTCGCCGCCCTGGGCCTT------CTCCTCGTC
GCTGCCGTCTCCTCCCTCCCTCTGCTCGCGCGTGCAGAGTGCGAGTGCGAGGCCGGCGGCGAGGAGGAGGAGCAGGACAA
GGCGGGCTCGCTGAGGCTCAGGATCATCGCCGTCTTCTGCATCCTCGTGGCCAGCGCGGCGGGCTGCGCCATCCCGTCGC
TCGGCCGGAGGTTCCCGGCGCTGAGCCCGGACAGGGACCTCTTCTTCGGCGTCAAGGCCTTCGCGGCGGGGGTCATCCTC
GCCACCTCCTTCGTGCACATCCTCCCGGAGGCCTTCGAGCGGCTCGGCTCGCCCTGCCTCGTCAGCGGGCCTTGGCAGAA
GTTCCCGTTCGCCGGCCTCGTCGCCATGCTCGCGGCCATCGCCACGCTCGTCGTAGACACCATCGCCACGGGGTACTTCC
AGCGCGCCGCGCACGCCAAGAAGGCCGCGGCCGTCGTCGGGGCCGACGACGTGGAGGCCACGCACGCTCATCACGCGCAC
GTCGGTCACTCCCACGGCGTGTCGGCCGTCGTTGCGTCATCGGCCGCGGGGGCCGACGACGGAGGCGCGCAGCTTATCCG
CCAGCGTGTCATCTCGCAGGTGCC----------GATGCATGCATCCATTCCATTC------------------------
-----------------------CATACTACCGCAGTGACTAAACTGTTGCATCGATCGATGCT----------------
---TACGCG-----------------------------------------------------------------------
--------------------TGCTTGATCTTA----AGGTGCTGGAGCTGGGGATCATAGTGCACTCGGTGATCATCGGC
ATGTCTCTCGGCGCCTCCCAGAGCGCCAGCACGATCAGACCACTCGTGGTCGCGCTAACTTTTCATCAGTTCTTCGAAGG
GATAGGGCTCGGAGGATGCATCGTTCAGGTACGTACGTGTCAGGTCGTCGACCGAC------------------------
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--------------------------------------------------------------ACAAGTCAGTATCAGGTC
CGTAAACTTAAG--------------------------------------------------------------------
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-------------------------------------------AGAAAATGCCGATGATCCGGCGGTA----AATGATAC
TTCTG----ACAGGCCAAGTTCCGCCTGAAGTCTGTGCTGCTCATGGCGCTCTTCTTCTCACTCACCACGCCGGTCGGGG
TCGTGATCGGCATCGGGATATCCTCTGTCTACGACGAGAACAGCCCCAACACCCTGATCATCCAAGGGATCCTCAGCGCC
GCCGCCGCCGGAATCCTCAACTACATGGCCCTCGTCGACCTCCTCGCGGAAGACTTCATGAACCCTAGGGTGCAGGGCAA
CGGAAGGCTGCAAGTCATCGTAAACCTCTCATTGCTGCTTGGGACGGCTCTCATGTCCGTGCTTGCCATATGGGCCTGAG
ATATCGTCCTCGCCTGAAAAAAGAA---TCGTTTTGAAGAATTTCTCTTGTTCTTATTCTTGGCTCAGTCATCTTGT---
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>chr1A_516
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-----------------------------------------------------------CAATCATGCCTCGGTAGGAAA
GTGTGAAGGTGGCGGAAGAAAGTGTAATGAAGCCATCCGATGTTGCAAGCATGGTGGACAACTG--GGGATCTTGGATGC
AGAAACGAAACGGTGACCAACGCATCGCGATAACA------AAAGGGGTAAGGTAGTGCGCACATAATATCAGCCAAAAG
CGGCGCGCTGGTGAGTGATATAAGTAACCGCAACTTCATGCACCACATGCGTATATACTGCTAGAC------------AG
ATGAAAAGTTGGATGCTGTGAATGGC------AACGGTATCTTGGGGTAAGTTTGGC--TTGGGAATATCGGCTAGCTGC
TT----------GTTTTTTAGAAAGTTTGCACGTGAACCGCGTACGTTCACACTGATG-----TCTCAGTTTATCAAGAG
GTGCTGGCTGGCAGCTAAGTA-CTCCCTCTGTCCCATAATATAAAAATGTTTTTGACACTAAATATAGTGTTAAAAACAT
TCTTATATTATGGGACAGAGGAAGTATATGCGTGCAGTGTACGTACGTCGTCTTTCCTGCTGCTCATCACCA------TT
GTTTATCCTCCGACGACTGAACCATG---GCAGCAGCCAGTCTCAAGCTCGCCGCCCTGTGCCTCATCTTCCTACTCG--
----TCGTCTCCTCCCACCCTCTGCTCGCCGGTGCCAAGTGCAAGTGCGAGGCCGGCGGTGAGGAGGAGAAGCAGGACAA
GGCGGCCTCGCTGAGGCTCAGGATCAGCGTCGTCTTCTGCATCCTCGTGGTCAG--------------------------
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>chr4B_1010
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--------------------------------GCTGCCAATCTCAAGCTCGCCGCCTTGTGCCTG------CTCCTCT--
----TCGTCTCCTCCCTCCCTTTGCTCGCTCGCGCCGAGTGCGAGTGCGAGGCCGGCG------AGGAGGAGCACGACAA
GGCGGGCGCGCTAAAGCTCAAGATTATCGCCATCTTCTGTATCCTCGTGGCCAGCGCCGCGGGCTGCGCCATCCCCTCGC
TCGGTCGAAAGTTCCCGGCGCTGAGCCCGGACAAGGACCTGTTCTTCGCCATCAAGGCCTTCGCGGCTGGGGTTATTCTC
GCCACGGCCTTCGTGCACATCCTCCCGGAGGCCTTCGAGCGGCTCGGCTCGCCGTGCCTCGTCGACGGGCCGTGGCAGAA
GTTCCCGTTCGCCGGATTCGTCGCCATGCTCGCGGCCATCGCCACCCTCATCGTCGACACCATTGCCACGGGATACTTCC
AGCGCGC---GCACGCCAAGAATACATCCGCGGCCGTCGGGT------ACGTGGAGGCCTCCGACTCCGAGCAGGCGCAC
GGTGGGCACTCCCACGGCGTGTCCGCCGTCATCGTGTCGTCATTC------TCCGACGA---CGGCGCGAAGCTCATCCG
TCACCGCGTCATCTCGCAGGTGCTGA------TTGATCGATGCG-----TCCATACTACTCCCTCCGTTCCGAGACAAGT
AATTCCTAACGGAGGGAGTAGTTGTAACTAAA--------------------------------------TTGTGCATGC
ATCAAGGCTGTGTG--CATGCATACTCGACTGA-GATTTAGGCTCCTATCACAAGTCAAATCACTGTGGCCGTGGACGCT
AATTAATTGGTCGCTTCCAATGCTTTATCTGAATTTAGGTGCTGGAGCTGGGGATCATAGTGCACTCGGTGATCATCGGC
ATGTCTTTGGGTGCATCTGAGAATGCCAGCACGATCAAACCACTCGTGGTGGCGCTAACTTTTCATCAATTCTTCGAAGG
GATAGGGCTGGGAGGATGCATCGTTCAGGTATGTTTTTTTTTTTCAACCGGGAATTACCCCCTTTCCATTAATTGCATAA
CGGAAATACATCAATCCACACCAGAGAATGGTATGCATATATTCCTCGATGTGAGTCGTTCCGCTCGTATACGAGTATGC
GTGCACAATCGACAAAGATGGATTTCCTAATATTCTGACATGGAGAGTGGATTTTCCACTCTCGGGTATATATACTACAC
CTGAGTTTACAAAAGACCGAAAAAATAATATCAAACGTGATAAACAAATCTGAAATTTAGCGACAAAACAGTATCAAACA
TGATAAAAACTTATATAAACTAATTTGAACCCTAAGCTTCTGAACTTTCTAAAATTGTTTCACCTGAACCCTAGCTTGGT
CTGGAATTTGAAGGTTTTATGGAATGTGACAAAATTCATATAGGTGTATGGGCGACGTGAGTTTGTAATATATATTACAA
TTTGTGTCATGTCATGAGCAAAAATAACGAGAGAAAAAATGATTCCTTCTGCCGTATTACCATCGATTAAGCTTTGCAGG
TTGGTAATTAGTAGCATCCCCCGTGTCCAGGATCTTTTTCATTTTCGTTAAATTCAAAGGTGCAAAACCACACTAAGTAA
TGTGGTAAAGTTTATTTTTTGCGGTTAGTAACATGGTAAATATTAGGAGGGTCTTTTAGCCTTCAAAGGTTCTACAGAAC
TGAATAATAATACATAGGTGTGTGAAGAGGGTTATACAGTTTTTCGCAAAAAAAGAGAGGGTTATACAGTATATAATATG
TGGCAGCTGAAAAATAATCAACCGATATGATTATGTTATTTCATAGAAAAAATTACAAAGTATAATGAATATATCTTGTC
ATTTTTCACAATGCATGTATATCATTTTTTGCAAGTTAATTTTTGTGGCCTATCATTTCATAGCATCGCCTGCAAAAAAA
AATAGCATCACTGCTCTTAAAAATCGGTCCAGGGTTCGTTTTAAAAGGTTTAGTGTTTCATATAAATGGTTTCATAGTTT
GGGGTTCTAGTTCGGAAAAGTACGATAGTTCAGGGTTCAAAACTAAAAATGTTAGTTATGTTTCAATGTTTCTAGATCAA
ACGAAAAGTTGTTTCTATTTTCCTATTTTTCTTCCAATAATCATTGGTCAAATAAATTACACCAAAATGGAATTCAAGTC
GCTTTAGGATTGTGTTGGATTTTGGAAATTTAATTGATCCATTTGTACATATTTTCTTGTAGTACAATCAAAAAAGTTGA
AATTTAAAATCACATCCTTGATTATAGAAAGAAAAGGAGATATTCAATATAATGTACCTTTTTGGTGGCTACTCTAGAAG
CTTACCTTAATCACGTGTATGTTTTTGCATTCCACCGGATTTACAAACTGCGAGAAGTTCAAGTGATTTGACACCACATG
TTTCACAGCCACCACTATTTTTTTTTTCAAAAAGGGGAATACAATGGCCTCTCTGCATGGCAGGATGCATTCATCCATTT
TATTAAGCGTGAATCAAGTTCAAGTTATCAAGTACAAGACAGTAATACAAATAAAAAGAAACACGACCACAATTGATTGT
ACCCAAAATTATATAGCTTATCAACATATATAACCTACGAGTGGCTTCCTAGCCAAACTGGTTGAATAACGCTACACAAC
CGTTTCTAGTCAGCTGCACCCAAAGGTCACTATTGTTTTACTCTTTACTTACATTGAGAGTCAATAAACTATAATATGGC
TTAGCAAACATGATACTAACTTCTTGGCCCATAAAATGATGGTAGAAAATGGATGCTACGTGATTAATGAAATAGCTTTG
CTCTATCGTACAGGCTAGGTTTCGCCTCAAGTCTGTCTTGATGATGGCACTCTTCTTCTCACTCACGCTGCCAGTTGGTG
TCGTGATCGGCATCGGGATATCCTCTGCTTACGACGAGAATAGCCCTAGGGCCCTAATCGTGGAAGGGCTCCTCAGCGCT
GCCGCCGCCGGAATTCTGAACTACATGGCGCTCGTCGACCTTCTAGCGGAAGACTTCATGAATCCTAGGGTGCAGAACAA
CGGAAGGTTGCAGGTCATCATTAACATCTCCTTGCTGGTTGGGACGGCTCTCATGTCCATGCTTGCTGTATGGGCATGAG
AAATCCTCCTCGGCTAAAAATAATAAATTCGTTTTGAA------------------------------------------
--------------------------------------------------------------------------------
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>chr4D_1010
--------------------------------------------------------------------------------
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--------------------------------GCTGCCAATCTCAAGCTCGCCGCCTTGTGCCTG------CTCCTCTTC
G------TCTCGTCCCTCCCTTTGCTCGCCCGCGCCGAGTGCGAGTGCGAGACCGGCG------AGGAGGAGCACGACAA
GGCGGGCGCGCTAAAGCTCAAGATCATCGCCATCTTCTGTATCCTCGTGGCCAGCGCCGCGGGTTGCGCCATTCCCTCGC
TCGGCCGAAAGTTCCCGGCGCTGAGCCCGGACAAGGACCTGTTCTTCGTCATCAAGGCCTTCGCGGCGGGGGTTATTCTC
GCCACGGCCTTCGTGCACATCCTCCCCGAGGCCTTCGAGCGGCTCGGCTCGCCGTGCCTCGTCGACGGGCCATGGCAGAA
GTTCCCGTTCGCCGGATTCGTCGCCATGCTCGCGGCCATTGCCACCCTCATCGTCGACACCATTGCCACGGGATACTTCC
AGCGCGC---GCACGCCAAGAATACATCCGCGGCCGTCGGGT------ACGTGGAGGCCTCCGACTCCGAGCAGGCGCAC
GGTGGGCACTCCCACGGCGTGTCCGCCGTCATCGCGTCGTCATTC------TCCGACGA---CGGCGCGCAGCTCATCCG
TCACCGCGTCATCTCGCAGGTGCTGA------TTGATCGATGCG-----TCCATAC------------------------
------------------TAGTTGTAACTAAA--------------------------------------TTGTGCATGC
ATCAAGGCTGTGTG--CATGCATACTCGACTGAAGATTTAGGCTCCTATCACTAGTCAAATCACTGTGGCCGTGGACGCT
AATTAATTGGTCGCTTCCAATGCTTTATCTGAATTTAGGTGCTGGAGCTGGGGATCATAGTGCACTCGGTGATCATCGGC
ATGTCTTTGGGTGCATCTGAGAATGCCAGCACGATCAAACCACTCGTGGTGGCGCTAACTTTTCATCAATTCTTCGAAGG
GATAGGGCTGGGAGGATGCATCGTTCAGGTA-------------------------------------------------
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>chr4A_1013
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-----------------------------------GCCAATCTCAAGCTCGCCGCCTTGTGCCTC------CTCCTCCTC
G------TCTCCTCTCTCCCTTTGCTCGCCCGCGCCGAGTGCGAGTGCGAGGCCGGCG------AGGAGGAGCACGACAA
GGCGGGCGCGCTAAAGCTCAAGATCATCGCCATCTTCTGTATCCTCGTGGCCAGCGCCGCGGGTTGCGCCATCCCCTCGC
TCGGCCGGAAGTTCCCGGCGCTGAGCCCGGACAAGGACCTGTTCTTCGCCATCAAGGCCTTCGCGGCGGGGGTTATTCTC
GCCACGGCCTTCGTGCACATCCTCCCGGAGGCCTTCGAGCGGCTCGGCTCGCCGTGCCTCGTCGACGGGCCGTGGCAGAA
GTTCCCGTTCGCCGGATTCGTCGCCATGCTCGCGGCCATCGCCACCCTTATCGTCGACACCATTGCCACGGGATACTTCC
AGCGCGC---GCACGCCAAGAATACATCCGCGGCCGTCGGGT------ACGTGGAGGCCTCCGACTCCGAGCAGGCGCAC
GGTGGGCACTCCCACGGCGTGTCCGCCGTCATCGCGTCGTCATTC------TCCGACGA---CGGCGCGAAGCTCATCCG
TCACCGCGTCATCTCGCAGGTGCTGATGCTGATTGATCGATGCG-----TCCATAC------------------------
------------------TAGTTGTAACTAAA--------------------------------------TTGTGCACGC
ATCAAGGCTGTGTGCACATGCATACTCGACTGA-GATTTAGGCTCCTATCATTAGTCAAATCACTGTCGCTGTGGACGCG
AATTAATTGGTCGATTCCAATGCTTTATCTGAA-TTAGGTGCTGGAGCTGGGGATCATAGTGCACTCGGTAATCATCGGC
ATGTCTTTGGGTGCATCTGAGAATGCCAGCACGATCAAACCACTCGTGGTCGCGCTAACTTTTCATCAATTCTTCGAAGG
GATAGGGCTGGGAGGATGCATCGTTCAGGTA-------------------------------------------------
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>SNPs
S-SSS---------------------------------------------------------------------------
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--------------------S-S---------S-----S-----------S-S-----------------S-S-------
----S--------S---S----S------------------------S--------------------------------
---SSSSSSS-------S-----------------S---SS----------------------S----------------
----S---------------S----SSS----------------------------------------------------
----------------------S-S------------------------------------S------------------
------------S------------S------S-----S-------------S---------------------------
---S-----------------------S---------------------------------------S------------
----------------------S----------------------------------------------S----------
--------------S-----S-SSSSS-----------------------------------------------------
----------SS-SS-----------------------------------------------------SSSSSSSS----
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-S------------------S-----------------------------------------------------------
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------------------S-S----------------------S----------------------S-------S-----
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-----------------------------------------------------------------------------S--
------------------------------------S-------------------------------------------
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------------------S-------------------------------------------------------------
----------------------------------------------------------------------S---------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
-------------------------------------------S----------S--S-----S----S-SS---SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3626
--------------------------------------------------------------------------------
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------GGCGAGAGATCGAAAGTGCT------------------------------------------------------
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>reverse_7124
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---ACCGCCGGAATCCTCAACTA---------------------------------------------------------
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-------------------------------------------
>forward_4867
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----------------------------------------------GTTGCATCGATCGACGCTTAC-------------
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>reverse_7846
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-----AAATTGCCCACAAACGTCCG-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
