Multiple sequence alignment - TraesCS1A01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G296900 chr1A 100.000 2735 0 0 1 2735 492044923 492047657 0.000000e+00 5051.0
1 TraesCS1A01G296900 chr1A 86.728 437 51 6 1106 1540 392084968 392084537 1.910000e-131 479.0
2 TraesCS1A01G296900 chr1B 90.109 2467 106 66 329 2735 529287441 529289829 0.000000e+00 3077.0
3 TraesCS1A01G296900 chr1B 88.614 404 38 6 1141 1540 422563208 422562809 4.090000e-133 484.0
4 TraesCS1A01G296900 chr1B 85.714 63 6 3 284 346 631232719 631232660 2.270000e-06 63.9
5 TraesCS1A01G296900 chr1D 90.229 2446 103 36 329 2735 393751233 393748885 0.000000e+00 3068.0
6 TraesCS1A01G296900 chr1D 88.308 402 43 4 1141 1540 311988723 311988324 1.910000e-131 479.0
7 TraesCS1A01G296900 chr1D 95.318 299 14 0 1 299 448631520 448631222 2.460000e-130 475.0
8 TraesCS1A01G296900 chr1D 94.000 50 1 2 282 330 463867605 463867557 1.050000e-09 75.0
9 TraesCS1A01G296900 chr3B 88.067 419 46 4 1129 1545 598468527 598468111 6.800000e-136 494.0
10 TraesCS1A01G296900 chr3B 88.136 59 4 3 288 344 446450965 446451022 1.760000e-07 67.6
11 TraesCS1A01G296900 chr7D 95.318 299 14 0 1 299 309449281 309448983 2.460000e-130 475.0
12 TraesCS1A01G296900 chr7D 95.318 299 14 0 1 299 394603469 394603171 2.460000e-130 475.0
13 TraesCS1A01G296900 chr7D 84.058 69 7 4 294 360 47416096 47416030 2.270000e-06 63.9
14 TraesCS1A01G296900 chr6D 95.318 299 14 0 1 299 80144142 80144440 2.460000e-130 475.0
15 TraesCS1A01G296900 chr6D 94.983 299 15 0 1 299 199680876 199680578 1.150000e-128 470.0
16 TraesCS1A01G296900 chr6D 95.000 300 14 1 1 299 305390929 305390630 1.150000e-128 470.0
17 TraesCS1A01G296900 chr5D 95.318 299 14 0 1 299 47740912 47740614 2.460000e-130 475.0
18 TraesCS1A01G296900 chr5D 95.318 299 14 0 1 299 277649416 277649118 2.460000e-130 475.0
19 TraesCS1A01G296900 chr3A 95.318 299 14 0 1 299 625375804 625376102 2.460000e-130 475.0
20 TraesCS1A01G296900 chr3A 86.874 419 51 4 1129 1545 597547659 597547243 1.480000e-127 466.0
21 TraesCS1A01G296900 chr3D 87.112 419 50 4 1129 1545 455106872 455106456 3.190000e-129 472.0
22 TraesCS1A01G296900 chr3D 88.333 60 3 4 284 340 469448328 469448270 4.890000e-08 69.4
23 TraesCS1A01G296900 chr6B 86.500 400 48 6 1141 1537 687525401 687525005 4.180000e-118 435.0
24 TraesCS1A01G296900 chr6B 92.453 53 2 2 282 333 89141897 89141846 1.050000e-09 75.0
25 TraesCS1A01G296900 chr6B 89.474 57 4 2 284 339 607208174 607208229 1.360000e-08 71.3
26 TraesCS1A01G296900 chr6B 89.655 58 0 6 288 344 89141902 89141954 4.890000e-08 69.4
27 TraesCS1A01G296900 chr7B 91.379 58 1 4 284 339 611720297 611720352 2.920000e-10 76.8
28 TraesCS1A01G296900 chr7B 89.655 58 2 4 288 343 299409651 299409706 1.360000e-08 71.3
29 TraesCS1A01G296900 chr5B 91.071 56 2 3 282 336 669713674 669713621 3.780000e-09 73.1
30 TraesCS1A01G296900 chr5B 87.097 62 5 3 294 353 218214402 218214462 1.760000e-07 67.6
31 TraesCS1A01G296900 chr2A 89.655 58 2 4 288 343 502257904 502257959 1.360000e-08 71.3
32 TraesCS1A01G296900 chr2B 87.097 62 5 3 288 347 762841811 762841871 1.760000e-07 67.6
33 TraesCS1A01G296900 chrUn 87.097 62 2 6 284 341 94847014 94846955 6.320000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G296900 chr1A 492044923 492047657 2734 False 5051 5051 100.000 1 2735 1 chr1A.!!$F1 2734
1 TraesCS1A01G296900 chr1B 529287441 529289829 2388 False 3077 3077 90.109 329 2735 1 chr1B.!!$F1 2406
2 TraesCS1A01G296900 chr1D 393748885 393751233 2348 True 3068 3068 90.229 329 2735 1 chr1D.!!$R2 2406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.037232 GACAGACACCCACTAGCCAC 60.037 60.0 0.00 0.0 0.00 5.01 F
223 224 0.040692 CATGATGGCGCCGAATCAAG 60.041 55.0 27.42 21.2 36.44 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1763 0.325296 ATACTCGGGAGGTGCTTGGA 60.325 55.000 0.0 0.0 0.0 3.53 R
2039 2096 1.680735 GGACATGAGCAAAACACCACA 59.319 47.619 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.511664 GAACGTTTCTTATGTACGTCAAAAC 57.488 36.000 0.46 0.87 46.59 2.43
25 26 5.977731 ACGTTTCTTATGTACGTCAAAACC 58.022 37.500 0.00 0.64 44.32 3.27
26 27 5.523188 ACGTTTCTTATGTACGTCAAAACCA 59.477 36.000 0.00 0.00 44.32 3.67
27 28 5.842327 CGTTTCTTATGTACGTCAAAACCAC 59.158 40.000 0.00 0.00 0.00 4.16
28 29 6.509837 CGTTTCTTATGTACGTCAAAACCACA 60.510 38.462 0.00 0.00 0.00 4.17
29 30 6.922247 TTCTTATGTACGTCAAAACCACAA 57.078 33.333 0.00 0.00 0.00 3.33
30 31 7.499321 TTCTTATGTACGTCAAAACCACAAT 57.501 32.000 0.00 0.00 0.00 2.71
31 32 6.893759 TCTTATGTACGTCAAAACCACAATG 58.106 36.000 0.00 0.00 0.00 2.82
32 33 6.483974 TCTTATGTACGTCAAAACCACAATGT 59.516 34.615 0.00 0.00 0.00 2.71
33 34 4.280101 TGTACGTCAAAACCACAATGTG 57.720 40.909 6.37 6.37 0.00 3.21
34 35 3.939592 TGTACGTCAAAACCACAATGTGA 59.060 39.130 15.91 0.00 35.23 3.58
35 36 4.576873 TGTACGTCAAAACCACAATGTGAT 59.423 37.500 15.91 0.00 35.23 3.06
36 37 5.758784 TGTACGTCAAAACCACAATGTGATA 59.241 36.000 15.91 0.00 35.23 2.15
37 38 5.957842 ACGTCAAAACCACAATGTGATAT 57.042 34.783 15.91 0.00 35.23 1.63
38 39 5.698832 ACGTCAAAACCACAATGTGATATG 58.301 37.500 15.91 8.29 35.23 1.78
39 40 4.558470 CGTCAAAACCACAATGTGATATGC 59.442 41.667 15.91 4.50 35.23 3.14
40 41 4.864247 GTCAAAACCACAATGTGATATGCC 59.136 41.667 15.91 0.00 35.23 4.40
41 42 4.525874 TCAAAACCACAATGTGATATGCCA 59.474 37.500 15.91 0.00 35.23 4.92
42 43 5.011431 TCAAAACCACAATGTGATATGCCAA 59.989 36.000 15.91 0.00 35.23 4.52
43 44 5.680594 AAACCACAATGTGATATGCCAAT 57.319 34.783 15.91 0.00 35.23 3.16
44 45 5.680594 AACCACAATGTGATATGCCAATT 57.319 34.783 15.91 0.00 35.23 2.32
45 46 5.680594 ACCACAATGTGATATGCCAATTT 57.319 34.783 15.91 0.00 35.23 1.82
46 47 5.663456 ACCACAATGTGATATGCCAATTTC 58.337 37.500 15.91 0.00 35.23 2.17
47 48 5.422970 ACCACAATGTGATATGCCAATTTCT 59.577 36.000 15.91 0.00 35.23 2.52
48 49 6.606796 ACCACAATGTGATATGCCAATTTCTA 59.393 34.615 15.91 0.00 35.23 2.10
49 50 7.288389 ACCACAATGTGATATGCCAATTTCTAT 59.712 33.333 15.91 0.00 35.23 1.98
50 51 8.145767 CCACAATGTGATATGCCAATTTCTATT 58.854 33.333 15.91 0.00 35.23 1.73
51 52 9.537192 CACAATGTGATATGCCAATTTCTATTT 57.463 29.630 7.78 0.00 35.23 1.40
55 56 8.177119 TGTGATATGCCAATTTCTATTTACCC 57.823 34.615 0.00 0.00 0.00 3.69
56 57 8.004215 TGTGATATGCCAATTTCTATTTACCCT 58.996 33.333 0.00 0.00 0.00 4.34
57 58 8.860088 GTGATATGCCAATTTCTATTTACCCTT 58.140 33.333 0.00 0.00 0.00 3.95
58 59 9.077885 TGATATGCCAATTTCTATTTACCCTTC 57.922 33.333 0.00 0.00 0.00 3.46
59 60 9.077885 GATATGCCAATTTCTATTTACCCTTCA 57.922 33.333 0.00 0.00 0.00 3.02
60 61 7.919385 ATGCCAATTTCTATTTACCCTTCAT 57.081 32.000 0.00 0.00 0.00 2.57
62 63 8.830915 TGCCAATTTCTATTTACCCTTCATAA 57.169 30.769 0.00 0.00 0.00 1.90
63 64 8.912988 TGCCAATTTCTATTTACCCTTCATAAG 58.087 33.333 0.00 0.00 0.00 1.73
77 78 5.741388 CTTCATAAGGACCCTTTTCATCG 57.259 43.478 6.62 0.00 37.47 3.84
78 79 5.428253 CTTCATAAGGACCCTTTTCATCGA 58.572 41.667 6.62 0.00 37.47 3.59
79 80 5.429681 TCATAAGGACCCTTTTCATCGAA 57.570 39.130 6.62 0.00 37.47 3.71
80 81 6.001449 TCATAAGGACCCTTTTCATCGAAT 57.999 37.500 6.62 0.00 37.47 3.34
81 82 6.055588 TCATAAGGACCCTTTTCATCGAATC 58.944 40.000 6.62 0.00 37.47 2.52
82 83 3.283259 AGGACCCTTTTCATCGAATCC 57.717 47.619 0.00 0.00 0.00 3.01
83 84 1.940613 GGACCCTTTTCATCGAATCCG 59.059 52.381 0.00 0.00 37.07 4.18
84 85 6.143986 AAGGACCCTTTTCATCGAATCCGA 62.144 45.833 0.00 0.00 40.27 4.55
85 86 7.383824 AAGGACCCTTTTCATCGAATCCGAT 62.384 44.000 0.00 0.00 43.83 4.18
86 87 9.773421 TAAGGACCCTTTTCATCGAATCCGATC 62.773 44.444 6.62 0.00 43.56 3.69
95 96 3.620929 TCGAATCCGATCCGACTAAAG 57.379 47.619 0.00 0.00 40.30 1.85
96 97 2.947652 TCGAATCCGATCCGACTAAAGT 59.052 45.455 0.00 0.00 40.30 2.66
97 98 3.043586 CGAATCCGATCCGACTAAAGTG 58.956 50.000 0.00 0.00 38.22 3.16
98 99 3.381949 GAATCCGATCCGACTAAAGTGG 58.618 50.000 0.00 0.00 0.00 4.00
99 100 1.108776 TCCGATCCGACTAAAGTGGG 58.891 55.000 4.89 4.89 44.12 4.61
104 105 2.893215 TCCGACTAAAGTGGGAGAGA 57.107 50.000 9.54 0.00 45.95 3.10
105 106 2.444421 TCCGACTAAAGTGGGAGAGAC 58.556 52.381 9.54 0.00 45.95 3.36
106 107 2.168496 CCGACTAAAGTGGGAGAGACA 58.832 52.381 5.29 0.00 45.38 3.41
107 108 2.164624 CCGACTAAAGTGGGAGAGACAG 59.835 54.545 5.29 0.00 45.38 3.51
108 109 3.082548 CGACTAAAGTGGGAGAGACAGA 58.917 50.000 0.00 0.00 0.00 3.41
109 110 3.119779 CGACTAAAGTGGGAGAGACAGAC 60.120 52.174 0.00 0.00 0.00 3.51
110 111 3.827302 GACTAAAGTGGGAGAGACAGACA 59.173 47.826 0.00 0.00 0.00 3.41
111 112 3.574826 ACTAAAGTGGGAGAGACAGACAC 59.425 47.826 0.00 0.00 0.00 3.67
112 113 1.343069 AAGTGGGAGAGACAGACACC 58.657 55.000 0.00 0.00 32.71 4.16
113 114 0.543174 AGTGGGAGAGACAGACACCC 60.543 60.000 0.00 0.00 40.79 4.61
114 115 0.832135 GTGGGAGAGACAGACACCCA 60.832 60.000 0.00 0.00 46.74 4.51
115 116 0.832135 TGGGAGAGACAGACACCCAC 60.832 60.000 0.00 0.00 44.50 4.61
116 117 0.543174 GGGAGAGACAGACACCCACT 60.543 60.000 0.00 0.00 40.20 4.00
117 118 1.272536 GGGAGAGACAGACACCCACTA 60.273 57.143 0.00 0.00 40.20 2.74
118 119 2.096248 GGAGAGACAGACACCCACTAG 58.904 57.143 0.00 0.00 0.00 2.57
119 120 1.474879 GAGAGACAGACACCCACTAGC 59.525 57.143 0.00 0.00 0.00 3.42
120 121 0.533032 GAGACAGACACCCACTAGCC 59.467 60.000 0.00 0.00 0.00 3.93
121 122 0.178932 AGACAGACACCCACTAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
122 123 0.037232 GACAGACACCCACTAGCCAC 60.037 60.000 0.00 0.00 0.00 5.01
123 124 1.296715 CAGACACCCACTAGCCACC 59.703 63.158 0.00 0.00 0.00 4.61
124 125 1.158705 AGACACCCACTAGCCACCT 59.841 57.895 0.00 0.00 0.00 4.00
125 126 0.473886 AGACACCCACTAGCCACCTT 60.474 55.000 0.00 0.00 0.00 3.50
126 127 1.203262 AGACACCCACTAGCCACCTTA 60.203 52.381 0.00 0.00 0.00 2.69
127 128 1.838077 GACACCCACTAGCCACCTTAT 59.162 52.381 0.00 0.00 0.00 1.73
128 129 1.559682 ACACCCACTAGCCACCTTATG 59.440 52.381 0.00 0.00 0.00 1.90
129 130 0.546598 ACCCACTAGCCACCTTATGC 59.453 55.000 0.00 0.00 0.00 3.14
130 131 0.546122 CCCACTAGCCACCTTATGCA 59.454 55.000 0.00 0.00 0.00 3.96
131 132 1.064758 CCCACTAGCCACCTTATGCAA 60.065 52.381 0.00 0.00 0.00 4.08
132 133 2.017049 CCACTAGCCACCTTATGCAAC 58.983 52.381 0.00 0.00 0.00 4.17
133 134 2.356125 CCACTAGCCACCTTATGCAACT 60.356 50.000 0.00 0.00 0.00 3.16
134 135 3.118408 CCACTAGCCACCTTATGCAACTA 60.118 47.826 0.00 0.00 0.00 2.24
135 136 4.122776 CACTAGCCACCTTATGCAACTAG 58.877 47.826 0.00 0.00 33.91 2.57
136 137 3.775316 ACTAGCCACCTTATGCAACTAGT 59.225 43.478 0.00 0.00 35.15 2.57
137 138 2.991250 AGCCACCTTATGCAACTAGTG 58.009 47.619 0.00 0.00 0.00 2.74
149 150 1.995484 CAACTAGTGCATGTCAGTCGG 59.005 52.381 0.00 0.00 0.00 4.79
150 151 1.257743 ACTAGTGCATGTCAGTCGGT 58.742 50.000 0.00 0.00 0.00 4.69
151 152 1.067565 ACTAGTGCATGTCAGTCGGTG 60.068 52.381 0.00 0.00 0.00 4.94
152 153 0.246360 TAGTGCATGTCAGTCGGTGG 59.754 55.000 0.00 0.00 0.00 4.61
153 154 1.005037 GTGCATGTCAGTCGGTGGA 60.005 57.895 0.00 0.00 0.00 4.02
154 155 0.602638 GTGCATGTCAGTCGGTGGAA 60.603 55.000 0.00 0.00 0.00 3.53
155 156 0.602638 TGCATGTCAGTCGGTGGAAC 60.603 55.000 0.00 0.00 0.00 3.62
168 169 2.806608 GTGGAACCAGTCTCACGTAA 57.193 50.000 0.00 0.00 0.00 3.18
170 171 1.000506 TGGAACCAGTCTCACGTAAGC 59.999 52.381 0.00 0.00 45.62 3.09
171 172 1.337821 GAACCAGTCTCACGTAAGCG 58.662 55.000 0.00 0.00 45.62 4.68
184 185 3.852945 CGTAAGCGTACGTGTAAAGTC 57.147 47.619 21.78 0.00 46.49 3.01
185 186 2.271182 CGTAAGCGTACGTGTAAAGTCG 59.729 50.000 21.78 7.60 46.49 4.18
186 187 1.689959 AAGCGTACGTGTAAAGTCGG 58.310 50.000 17.90 0.00 0.00 4.79
187 188 0.593128 AGCGTACGTGTAAAGTCGGT 59.407 50.000 17.90 0.00 0.00 4.69
188 189 0.977674 GCGTACGTGTAAAGTCGGTC 59.022 55.000 17.90 0.00 0.00 4.79
189 190 1.606606 CGTACGTGTAAAGTCGGTCC 58.393 55.000 7.22 0.00 0.00 4.46
190 191 1.606606 GTACGTGTAAAGTCGGTCCG 58.393 55.000 4.39 4.39 0.00 4.79
191 192 0.521291 TACGTGTAAAGTCGGTCCGG 59.479 55.000 12.29 0.00 0.00 5.14
192 193 1.444895 CGTGTAAAGTCGGTCCGGG 60.445 63.158 12.29 0.00 0.00 5.73
193 194 1.739196 GTGTAAAGTCGGTCCGGGC 60.739 63.158 12.29 0.00 0.00 6.13
194 195 2.125391 GTAAAGTCGGTCCGGGCC 60.125 66.667 17.58 17.58 0.00 5.80
195 196 2.604079 TAAAGTCGGTCCGGGCCA 60.604 61.111 27.89 9.80 0.00 5.36
196 197 2.946346 TAAAGTCGGTCCGGGCCAC 61.946 63.158 27.89 21.54 0.00 5.01
199 200 4.754667 GTCGGTCCGGGCCACTTC 62.755 72.222 27.89 8.02 0.00 3.01
201 202 4.096003 CGGTCCGGGCCACTTCAT 62.096 66.667 27.89 0.00 0.00 2.57
202 203 2.355115 GGTCCGGGCCACTTCATT 59.645 61.111 23.50 0.00 0.00 2.57
203 204 1.749258 GGTCCGGGCCACTTCATTC 60.749 63.158 23.50 0.00 0.00 2.67
204 205 1.749258 GTCCGGGCCACTTCATTCC 60.749 63.158 4.39 0.00 0.00 3.01
205 206 2.227757 TCCGGGCCACTTCATTCCA 61.228 57.895 4.39 0.00 0.00 3.53
206 207 1.076777 CCGGGCCACTTCATTCCAT 60.077 57.895 4.39 0.00 0.00 3.41
207 208 1.386525 CCGGGCCACTTCATTCCATG 61.387 60.000 4.39 0.00 0.00 3.66
208 209 0.394216 CGGGCCACTTCATTCCATGA 60.394 55.000 4.39 0.00 37.55 3.07
209 210 1.751733 CGGGCCACTTCATTCCATGAT 60.752 52.381 4.39 0.00 39.39 2.45
210 211 1.684983 GGGCCACTTCATTCCATGATG 59.315 52.381 4.39 0.00 39.39 3.07
211 212 1.684983 GGCCACTTCATTCCATGATGG 59.315 52.381 4.74 4.74 40.68 3.51
213 214 1.335810 CCACTTCATTCCATGATGGCG 59.664 52.381 6.59 0.00 39.39 5.69
214 215 1.027357 ACTTCATTCCATGATGGCGC 58.973 50.000 6.59 0.00 39.39 6.53
215 216 0.313043 CTTCATTCCATGATGGCGCC 59.687 55.000 22.73 22.73 39.39 6.53
216 217 1.446516 TTCATTCCATGATGGCGCCG 61.447 55.000 23.90 6.63 39.39 6.46
217 218 1.893335 CATTCCATGATGGCGCCGA 60.893 57.895 23.90 11.80 37.47 5.54
218 219 1.152984 ATTCCATGATGGCGCCGAA 60.153 52.632 23.90 17.94 37.47 4.30
219 220 0.538057 ATTCCATGATGGCGCCGAAT 60.538 50.000 23.90 19.42 37.47 3.34
220 221 1.165907 TTCCATGATGGCGCCGAATC 61.166 55.000 23.90 20.30 37.47 2.52
221 222 1.893335 CCATGATGGCGCCGAATCA 60.893 57.895 26.31 26.31 37.23 2.57
222 223 1.446516 CCATGATGGCGCCGAATCAA 61.447 55.000 27.42 14.68 36.44 2.57
223 224 0.040692 CATGATGGCGCCGAATCAAG 60.041 55.000 27.42 21.20 36.44 3.02
224 225 0.179048 ATGATGGCGCCGAATCAAGA 60.179 50.000 27.42 9.95 36.44 3.02
225 226 0.179048 TGATGGCGCCGAATCAAGAT 60.179 50.000 23.18 9.04 29.97 2.40
226 227 1.069978 TGATGGCGCCGAATCAAGATA 59.930 47.619 23.18 2.58 29.97 1.98
227 228 2.143122 GATGGCGCCGAATCAAGATAA 58.857 47.619 23.90 0.00 0.00 1.75
228 229 1.581934 TGGCGCCGAATCAAGATAAG 58.418 50.000 23.90 0.00 0.00 1.73
229 230 1.138069 TGGCGCCGAATCAAGATAAGA 59.862 47.619 23.90 0.00 0.00 2.10
230 231 1.527311 GGCGCCGAATCAAGATAAGAC 59.473 52.381 12.58 0.00 0.00 3.01
231 232 2.474816 GCGCCGAATCAAGATAAGACT 58.525 47.619 0.00 0.00 0.00 3.24
232 233 3.552273 GGCGCCGAATCAAGATAAGACTA 60.552 47.826 12.58 0.00 0.00 2.59
233 234 3.670991 GCGCCGAATCAAGATAAGACTAG 59.329 47.826 0.00 0.00 0.00 2.57
234 235 4.793353 GCGCCGAATCAAGATAAGACTAGT 60.793 45.833 0.00 0.00 0.00 2.57
235 236 5.562307 GCGCCGAATCAAGATAAGACTAGTA 60.562 44.000 0.00 0.00 0.00 1.82
236 237 6.436261 CGCCGAATCAAGATAAGACTAGTAA 58.564 40.000 0.00 0.00 0.00 2.24
237 238 6.360148 CGCCGAATCAAGATAAGACTAGTAAC 59.640 42.308 0.00 0.00 0.00 2.50
238 239 6.360148 GCCGAATCAAGATAAGACTAGTAACG 59.640 42.308 0.00 0.00 0.00 3.18
239 240 6.856938 CCGAATCAAGATAAGACTAGTAACGG 59.143 42.308 0.00 0.00 0.00 4.44
240 241 6.360148 CGAATCAAGATAAGACTAGTAACGGC 59.640 42.308 0.00 0.00 0.00 5.68
241 242 6.710597 ATCAAGATAAGACTAGTAACGGCA 57.289 37.500 0.00 0.00 0.00 5.69
242 243 6.519679 TCAAGATAAGACTAGTAACGGCAA 57.480 37.500 0.00 0.00 0.00 4.52
243 244 6.561614 TCAAGATAAGACTAGTAACGGCAAG 58.438 40.000 0.00 0.00 0.00 4.01
244 245 6.152323 TCAAGATAAGACTAGTAACGGCAAGT 59.848 38.462 0.00 0.00 0.00 3.16
245 246 7.337689 TCAAGATAAGACTAGTAACGGCAAGTA 59.662 37.037 0.00 0.00 0.00 2.24
246 247 7.636150 AGATAAGACTAGTAACGGCAAGTAA 57.364 36.000 0.00 0.00 0.00 2.24
247 248 8.059798 AGATAAGACTAGTAACGGCAAGTAAA 57.940 34.615 0.00 0.00 0.00 2.01
248 249 8.693625 AGATAAGACTAGTAACGGCAAGTAAAT 58.306 33.333 0.00 0.00 0.00 1.40
249 250 9.310716 GATAAGACTAGTAACGGCAAGTAAATT 57.689 33.333 0.00 0.00 0.00 1.82
250 251 6.963049 AGACTAGTAACGGCAAGTAAATTG 57.037 37.500 0.00 0.00 42.20 2.32
251 252 6.694447 AGACTAGTAACGGCAAGTAAATTGA 58.306 36.000 0.00 0.00 41.83 2.57
252 253 6.589139 AGACTAGTAACGGCAAGTAAATTGAC 59.411 38.462 0.00 0.00 44.22 3.18
263 264 6.064525 GCAAGTAAATTGACAAAATTGACGC 58.935 36.000 0.00 0.00 41.83 5.19
264 265 6.292061 GCAAGTAAATTGACAAAATTGACGCA 60.292 34.615 0.00 0.00 41.83 5.24
265 266 6.747659 AGTAAATTGACAAAATTGACGCAC 57.252 33.333 0.00 0.00 0.00 5.34
266 267 6.269315 AGTAAATTGACAAAATTGACGCACA 58.731 32.000 0.00 0.00 0.00 4.57
267 268 5.388225 AAATTGACAAAATTGACGCACAC 57.612 34.783 0.00 0.00 0.00 3.82
268 269 3.494045 TTGACAAAATTGACGCACACA 57.506 38.095 0.00 0.00 0.00 3.72
269 270 3.494045 TGACAAAATTGACGCACACAA 57.506 38.095 0.00 0.00 0.00 3.33
270 271 3.175152 TGACAAAATTGACGCACACAAC 58.825 40.909 0.00 0.00 0.00 3.32
271 272 3.175152 GACAAAATTGACGCACACAACA 58.825 40.909 0.00 0.00 0.00 3.33
272 273 3.579709 ACAAAATTGACGCACACAACAA 58.420 36.364 0.00 0.00 0.00 2.83
273 274 4.180057 ACAAAATTGACGCACACAACAAT 58.820 34.783 0.00 0.00 34.99 2.71
274 275 4.629200 ACAAAATTGACGCACACAACAATT 59.371 33.333 0.00 0.00 42.25 2.32
276 277 4.775440 AATTGACGCACACAACAATTTG 57.225 36.364 0.00 0.00 39.03 2.32
290 291 4.468095 ACAATTTGTGTTCTACTCGTGC 57.532 40.909 0.15 0.00 37.01 5.34
291 292 3.874543 ACAATTTGTGTTCTACTCGTGCA 59.125 39.130 0.15 0.00 37.01 4.57
292 293 4.515191 ACAATTTGTGTTCTACTCGTGCAT 59.485 37.500 0.15 0.00 37.01 3.96
293 294 5.699001 ACAATTTGTGTTCTACTCGTGCATA 59.301 36.000 0.15 0.00 37.01 3.14
294 295 6.203915 ACAATTTGTGTTCTACTCGTGCATAA 59.796 34.615 0.15 0.00 37.01 1.90
295 296 6.795098 ATTTGTGTTCTACTCGTGCATAAA 57.205 33.333 0.00 0.00 0.00 1.40
296 297 6.606234 TTTGTGTTCTACTCGTGCATAAAA 57.394 33.333 0.00 0.00 0.00 1.52
297 298 6.606234 TTGTGTTCTACTCGTGCATAAAAA 57.394 33.333 0.00 0.00 0.00 1.94
298 299 5.981174 TGTGTTCTACTCGTGCATAAAAAC 58.019 37.500 0.00 0.00 0.00 2.43
299 300 5.070862 GTGTTCTACTCGTGCATAAAAACG 58.929 41.667 0.00 0.00 41.11 3.60
300 301 4.746115 TGTTCTACTCGTGCATAAAAACGT 59.254 37.500 0.00 0.00 40.61 3.99
301 302 5.107760 TGTTCTACTCGTGCATAAAAACGTC 60.108 40.000 0.00 0.00 40.61 4.34
302 303 4.801891 TCTACTCGTGCATAAAAACGTCT 58.198 39.130 0.00 0.00 40.61 4.18
303 304 5.224888 TCTACTCGTGCATAAAAACGTCTT 58.775 37.500 0.00 0.00 40.61 3.01
304 305 6.380995 TCTACTCGTGCATAAAAACGTCTTA 58.619 36.000 0.00 0.00 40.61 2.10
305 306 5.260027 ACTCGTGCATAAAAACGTCTTAC 57.740 39.130 0.00 0.00 40.61 2.34
306 307 4.746115 ACTCGTGCATAAAAACGTCTTACA 59.254 37.500 0.00 0.00 40.61 2.41
307 308 5.407387 ACTCGTGCATAAAAACGTCTTACAT 59.593 36.000 0.00 0.00 40.61 2.29
308 309 6.073440 ACTCGTGCATAAAAACGTCTTACATT 60.073 34.615 0.00 0.00 40.61 2.71
309 310 7.116662 ACTCGTGCATAAAAACGTCTTACATTA 59.883 33.333 0.00 0.00 40.61 1.90
310 311 7.966111 TCGTGCATAAAAACGTCTTACATTAT 58.034 30.769 0.00 0.00 40.61 1.28
311 312 7.900864 TCGTGCATAAAAACGTCTTACATTATG 59.099 33.333 0.00 0.05 40.61 1.90
312 313 7.163520 CGTGCATAAAAACGTCTTACATTATGG 59.836 37.037 0.00 0.00 35.13 2.74
313 314 7.431084 GTGCATAAAAACGTCTTACATTATGGG 59.569 37.037 0.00 0.00 33.50 4.00
314 315 7.337184 TGCATAAAAACGTCTTACATTATGGGA 59.663 33.333 0.00 0.00 33.50 4.37
315 316 7.642586 GCATAAAAACGTCTTACATTATGGGAC 59.357 37.037 0.00 1.75 33.50 4.46
318 319 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
319 320 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
320 321 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
321 322 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
322 323 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
323 324 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
324 325 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
325 326 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
326 327 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
327 328 4.202749 ACATTATGGGACGGAGGGAGTATA 60.203 45.833 0.00 0.00 0.00 1.47
328 329 4.687262 TTATGGGACGGAGGGAGTATAT 57.313 45.455 0.00 0.00 0.00 0.86
329 330 5.801720 TTATGGGACGGAGGGAGTATATA 57.198 43.478 0.00 0.00 0.00 0.86
330 331 4.901785 ATGGGACGGAGGGAGTATATAT 57.098 45.455 0.00 0.00 0.00 0.86
331 332 7.470180 TTATGGGACGGAGGGAGTATATATA 57.530 40.000 0.00 0.00 0.00 0.86
332 333 5.801720 TGGGACGGAGGGAGTATATATAA 57.198 43.478 0.00 0.00 0.00 0.98
396 400 5.975410 AAGAGAGTCTGAAAACTGTTTCG 57.025 39.130 6.20 0.00 45.26 3.46
427 431 6.825610 ACAAGTGGAATTTGGAATAGCAAAA 58.174 32.000 0.00 0.00 37.94 2.44
428 432 6.705825 ACAAGTGGAATTTGGAATAGCAAAAC 59.294 34.615 0.00 0.00 37.94 2.43
429 433 6.418057 AGTGGAATTTGGAATAGCAAAACA 57.582 33.333 0.00 0.00 0.00 2.83
430 434 6.825610 AGTGGAATTTGGAATAGCAAAACAA 58.174 32.000 0.00 0.00 0.00 2.83
431 435 7.452562 AGTGGAATTTGGAATAGCAAAACAAT 58.547 30.769 0.00 0.00 0.00 2.71
432 436 7.388500 AGTGGAATTTGGAATAGCAAAACAATG 59.612 33.333 0.00 0.00 0.00 2.82
446 450 1.185315 ACAATGCATGTTACCAGGGC 58.815 50.000 0.00 0.00 40.06 5.19
464 468 2.101582 GGGCACTGATCAGTACTACTGG 59.898 54.545 27.44 14.47 45.94 4.00
465 469 2.761208 GGCACTGATCAGTACTACTGGT 59.239 50.000 27.44 8.92 43.40 4.00
466 470 3.952323 GGCACTGATCAGTACTACTGGTA 59.048 47.826 27.44 0.00 40.19 3.25
467 471 4.202030 GGCACTGATCAGTACTACTGGTAC 60.202 50.000 27.44 7.84 40.19 3.34
550 556 3.853330 CTGCCACAATCCGACGCG 61.853 66.667 3.53 3.53 0.00 6.01
576 582 1.128724 CGATACCGCATCTCGATCGC 61.129 60.000 11.09 0.00 37.83 4.58
628 644 1.394266 CCTCTCAGCCTCAGCCTCTC 61.394 65.000 0.00 0.00 41.25 3.20
654 670 3.117812 CCTACGCGCACATGCACA 61.118 61.111 5.73 0.00 42.21 4.57
660 676 1.868997 GCGCACATGCACAACTACT 59.131 52.632 0.30 0.00 42.21 2.57
661 677 0.238289 GCGCACATGCACAACTACTT 59.762 50.000 0.30 0.00 42.21 2.24
662 678 1.463056 GCGCACATGCACAACTACTTA 59.537 47.619 0.30 0.00 42.21 2.24
663 679 2.724839 GCGCACATGCACAACTACTTAC 60.725 50.000 0.30 0.00 42.21 2.34
674 690 6.136071 GCACAACTACTTACAACTGTTCATG 58.864 40.000 0.00 0.00 0.00 3.07
676 692 5.820423 ACAACTACTTACAACTGTTCATGCA 59.180 36.000 0.00 0.00 0.00 3.96
677 693 6.486657 ACAACTACTTACAACTGTTCATGCAT 59.513 34.615 0.00 0.00 0.00 3.96
678 694 7.659799 ACAACTACTTACAACTGTTCATGCATA 59.340 33.333 0.00 0.00 0.00 3.14
679 695 7.596749 ACTACTTACAACTGTTCATGCATAC 57.403 36.000 0.00 0.00 0.00 2.39
680 696 5.530519 ACTTACAACTGTTCATGCATACG 57.469 39.130 0.00 0.00 0.00 3.06
807 857 2.053244 CTCCCCAGCTATCACCTTCAT 58.947 52.381 0.00 0.00 0.00 2.57
808 858 2.441001 CTCCCCAGCTATCACCTTCATT 59.559 50.000 0.00 0.00 0.00 2.57
809 859 2.852449 TCCCCAGCTATCACCTTCATTT 59.148 45.455 0.00 0.00 0.00 2.32
810 860 3.117888 TCCCCAGCTATCACCTTCATTTC 60.118 47.826 0.00 0.00 0.00 2.17
811 861 3.371917 CCCCAGCTATCACCTTCATTTCA 60.372 47.826 0.00 0.00 0.00 2.69
860 910 1.347707 CTTCACTAGCACCCAGGTTCA 59.652 52.381 0.00 0.00 0.00 3.18
944 994 3.160047 CTCCCTGCCAGATCGCCT 61.160 66.667 0.00 0.00 0.00 5.52
998 1048 3.577389 GCTAACCTCCAAGCCACAT 57.423 52.632 0.00 0.00 32.40 3.21
1597 1647 4.492160 GCTCATCGTCGGTCGCCA 62.492 66.667 0.00 0.00 39.67 5.69
1705 1755 1.226717 GCTGAAGGGAGTAGCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
1707 1757 1.658686 CTGAAGGGAGTAGCGTCGCT 61.659 60.000 25.08 25.08 41.26 4.93
1828 1881 3.892522 TGTATACATCGTTCGCGCTTAT 58.107 40.909 5.56 0.00 41.05 1.73
1883 1936 7.059156 CCATTTGATTTCACTATCCTTCTCCT 58.941 38.462 0.00 0.00 0.00 3.69
1930 1983 5.109662 TGTCGATCGAGTCCTTATGATTC 57.890 43.478 20.09 2.15 0.00 2.52
1936 1989 6.314152 CGATCGAGTCCTTATGATTCTAGCTA 59.686 42.308 10.26 0.00 0.00 3.32
2039 2096 4.582869 TGAACAATTGATCAGTGCTAGCT 58.417 39.130 17.23 0.00 0.00 3.32
2040 2097 4.393990 TGAACAATTGATCAGTGCTAGCTG 59.606 41.667 17.23 6.97 37.81 4.24
2043 2100 2.391616 TTGATCAGTGCTAGCTGTGG 57.608 50.000 17.23 3.15 37.70 4.17
2060 2117 1.680735 GTGGTGTTTTGCTCATGTCCA 59.319 47.619 0.00 0.00 0.00 4.02
2085 2142 3.635004 TGTCCCATACATACCCTCATGGT 60.635 47.826 0.00 0.00 41.62 3.55
2086 2143 5.732510 TGTCCCATACATACCCTCATGGTG 61.733 50.000 0.00 0.00 39.84 4.17
2087 2144 7.897941 TGTCCCATACATACCCTCATGGTGA 62.898 48.000 0.00 0.00 39.84 4.02
2129 2191 9.847224 TGAGGTAAATTGGGTATTTAAGATCTC 57.153 33.333 0.00 0.00 39.70 2.75
2143 2205 3.967467 AGATCTCCCATTGCAAGGAAT 57.033 42.857 13.66 7.27 0.00 3.01
2178 2240 7.887996 TCTTTTGATTACCATGCATTGTTTC 57.112 32.000 8.93 7.51 0.00 2.78
2185 2249 8.217111 TGATTACCATGCATTGTTTCCTCTATA 58.783 33.333 8.93 0.00 0.00 1.31
2197 2261 8.718102 TTGTTTCCTCTATACATAGTTCTTGC 57.282 34.615 0.00 0.00 0.00 4.01
2366 2430 2.897326 TCTGGTGCACACATACAGTAGT 59.103 45.455 20.43 0.00 35.97 2.73
2368 2432 2.630580 TGGTGCACACATACAGTAGTCA 59.369 45.455 20.43 0.00 0.00 3.41
2371 2435 4.307432 GTGCACACATACAGTAGTCAAGT 58.693 43.478 13.17 0.00 0.00 3.16
2394 2458 1.420138 ACGACCTCCTCAACCACATTT 59.580 47.619 0.00 0.00 0.00 2.32
2396 2460 2.076863 GACCTCCTCAACCACATTTCG 58.923 52.381 0.00 0.00 0.00 3.46
2398 2462 2.289694 ACCTCCTCAACCACATTTCGAG 60.290 50.000 0.00 0.00 0.00 4.04
2399 2463 2.028112 CCTCCTCAACCACATTTCGAGA 60.028 50.000 0.00 0.00 0.00 4.04
2400 2464 3.257393 CTCCTCAACCACATTTCGAGAG 58.743 50.000 0.00 0.00 0.00 3.20
2402 2466 3.056536 TCCTCAACCACATTTCGAGAGAG 60.057 47.826 0.00 0.00 43.69 3.20
2409 2498 6.287589 ACCACATTTCGAGAGAGAGTAATT 57.712 37.500 0.00 0.00 43.69 1.40
2417 2506 3.911365 CGAGAGAGAGTAATTAGCATGCG 59.089 47.826 13.01 0.00 0.00 4.73
2615 2706 2.588856 GGCCGGATGGGACACTGTAC 62.589 65.000 5.05 0.00 46.58 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.842327 GTGGTTTTGACGTACATAAGAAACG 59.158 40.000 0.00 0.00 42.17 3.60
4 5 6.717413 TGTGGTTTTGACGTACATAAGAAAC 58.283 36.000 0.00 0.00 0.00 2.78
5 6 6.922247 TGTGGTTTTGACGTACATAAGAAA 57.078 33.333 0.00 0.00 0.00 2.52
6 7 6.922247 TTGTGGTTTTGACGTACATAAGAA 57.078 33.333 0.00 0.00 0.00 2.52
7 8 6.483974 ACATTGTGGTTTTGACGTACATAAGA 59.516 34.615 0.00 0.00 0.00 2.10
8 9 6.577055 CACATTGTGGTTTTGACGTACATAAG 59.423 38.462 9.00 0.00 0.00 1.73
9 10 6.260271 TCACATTGTGGTTTTGACGTACATAA 59.740 34.615 16.46 0.00 33.87 1.90
10 11 5.758784 TCACATTGTGGTTTTGACGTACATA 59.241 36.000 16.46 0.00 33.87 2.29
11 12 4.576873 TCACATTGTGGTTTTGACGTACAT 59.423 37.500 16.46 0.00 33.87 2.29
12 13 3.939592 TCACATTGTGGTTTTGACGTACA 59.060 39.130 16.46 0.00 33.87 2.90
13 14 4.539509 TCACATTGTGGTTTTGACGTAC 57.460 40.909 16.46 0.00 33.87 3.67
14 15 6.621812 GCATATCACATTGTGGTTTTGACGTA 60.622 38.462 16.46 0.00 33.87 3.57
15 16 5.698832 CATATCACATTGTGGTTTTGACGT 58.301 37.500 16.46 0.00 33.87 4.34
16 17 4.558470 GCATATCACATTGTGGTTTTGACG 59.442 41.667 16.46 0.00 33.87 4.35
17 18 4.864247 GGCATATCACATTGTGGTTTTGAC 59.136 41.667 16.46 9.42 33.87 3.18
18 19 4.525874 TGGCATATCACATTGTGGTTTTGA 59.474 37.500 16.46 0.00 33.87 2.69
19 20 4.818642 TGGCATATCACATTGTGGTTTTG 58.181 39.130 16.46 11.53 33.87 2.44
20 21 5.480642 TTGGCATATCACATTGTGGTTTT 57.519 34.783 16.46 0.00 33.87 2.43
21 22 5.680594 ATTGGCATATCACATTGTGGTTT 57.319 34.783 16.46 1.96 33.87 3.27
22 23 5.680594 AATTGGCATATCACATTGTGGTT 57.319 34.783 16.46 7.53 33.87 3.67
23 24 5.422970 AGAAATTGGCATATCACATTGTGGT 59.577 36.000 16.46 12.34 33.87 4.16
24 25 5.909477 AGAAATTGGCATATCACATTGTGG 58.091 37.500 16.46 1.97 33.87 4.17
25 26 9.537192 AAATAGAAATTGGCATATCACATTGTG 57.463 29.630 10.64 10.64 34.45 3.33
29 30 8.806146 GGGTAAATAGAAATTGGCATATCACAT 58.194 33.333 0.00 0.00 0.00 3.21
30 31 8.004215 AGGGTAAATAGAAATTGGCATATCACA 58.996 33.333 0.00 0.00 0.00 3.58
31 32 8.409358 AGGGTAAATAGAAATTGGCATATCAC 57.591 34.615 0.00 0.00 0.00 3.06
32 33 9.077885 GAAGGGTAAATAGAAATTGGCATATCA 57.922 33.333 0.00 0.00 0.00 2.15
33 34 9.077885 TGAAGGGTAAATAGAAATTGGCATATC 57.922 33.333 0.00 0.00 0.00 1.63
34 35 9.605951 ATGAAGGGTAAATAGAAATTGGCATAT 57.394 29.630 0.00 0.00 0.00 1.78
36 37 7.919385 ATGAAGGGTAAATAGAAATTGGCAT 57.081 32.000 0.00 0.00 0.00 4.40
37 38 8.830915 TTATGAAGGGTAAATAGAAATTGGCA 57.169 30.769 0.00 0.00 0.00 4.92
38 39 8.360390 CCTTATGAAGGGTAAATAGAAATTGGC 58.640 37.037 0.00 0.00 45.27 4.52
55 56 5.428253 TCGATGAAAAGGGTCCTTATGAAG 58.572 41.667 2.30 0.00 34.84 3.02
56 57 5.429681 TCGATGAAAAGGGTCCTTATGAA 57.570 39.130 2.30 0.00 34.84 2.57
57 58 5.429681 TTCGATGAAAAGGGTCCTTATGA 57.570 39.130 2.30 0.00 34.84 2.15
58 59 5.239525 GGATTCGATGAAAAGGGTCCTTATG 59.760 44.000 2.30 0.00 34.84 1.90
59 60 5.377478 GGATTCGATGAAAAGGGTCCTTAT 58.623 41.667 2.30 0.00 34.84 1.73
60 61 4.682320 CGGATTCGATGAAAAGGGTCCTTA 60.682 45.833 2.30 0.00 39.00 2.69
61 62 3.621558 GGATTCGATGAAAAGGGTCCTT 58.378 45.455 0.00 0.00 37.98 3.36
62 63 2.420129 CGGATTCGATGAAAAGGGTCCT 60.420 50.000 0.00 0.00 39.00 3.85
63 64 1.940613 CGGATTCGATGAAAAGGGTCC 59.059 52.381 0.00 0.00 39.00 4.46
64 65 2.901249 TCGGATTCGATGAAAAGGGTC 58.099 47.619 0.00 0.00 40.88 4.46
76 77 3.043586 CACTTTAGTCGGATCGGATTCG 58.956 50.000 12.50 12.50 37.82 3.34
77 78 3.381949 CCACTTTAGTCGGATCGGATTC 58.618 50.000 6.23 0.00 0.00 2.52
78 79 2.102588 CCCACTTTAGTCGGATCGGATT 59.897 50.000 6.23 4.92 0.00 3.01
79 80 1.687123 CCCACTTTAGTCGGATCGGAT 59.313 52.381 6.23 0.00 0.00 4.18
80 81 1.108776 CCCACTTTAGTCGGATCGGA 58.891 55.000 0.00 0.00 0.00 4.55
81 82 1.067212 CTCCCACTTTAGTCGGATCGG 59.933 57.143 0.00 0.00 34.84 4.18
82 83 2.022195 TCTCCCACTTTAGTCGGATCG 58.978 52.381 0.00 0.00 34.84 3.69
83 84 3.067040 GTCTCTCCCACTTTAGTCGGATC 59.933 52.174 0.00 0.00 34.84 3.36
84 85 3.025262 GTCTCTCCCACTTTAGTCGGAT 58.975 50.000 0.00 0.00 34.84 4.18
85 86 2.224942 TGTCTCTCCCACTTTAGTCGGA 60.225 50.000 0.00 0.00 34.20 4.55
86 87 2.164624 CTGTCTCTCCCACTTTAGTCGG 59.835 54.545 0.00 0.00 0.00 4.79
87 88 3.082548 TCTGTCTCTCCCACTTTAGTCG 58.917 50.000 0.00 0.00 0.00 4.18
88 89 3.827302 TGTCTGTCTCTCCCACTTTAGTC 59.173 47.826 0.00 0.00 0.00 2.59
89 90 3.574826 GTGTCTGTCTCTCCCACTTTAGT 59.425 47.826 0.00 0.00 0.00 2.24
90 91 3.056465 GGTGTCTGTCTCTCCCACTTTAG 60.056 52.174 0.00 0.00 0.00 1.85
91 92 2.897969 GGTGTCTGTCTCTCCCACTTTA 59.102 50.000 0.00 0.00 0.00 1.85
92 93 1.694696 GGTGTCTGTCTCTCCCACTTT 59.305 52.381 0.00 0.00 0.00 2.66
93 94 1.343069 GGTGTCTGTCTCTCCCACTT 58.657 55.000 0.00 0.00 0.00 3.16
94 95 0.543174 GGGTGTCTGTCTCTCCCACT 60.543 60.000 0.00 0.00 38.15 4.00
95 96 0.832135 TGGGTGTCTGTCTCTCCCAC 60.832 60.000 0.00 0.00 42.52 4.61
96 97 0.832135 GTGGGTGTCTGTCTCTCCCA 60.832 60.000 0.00 0.00 44.76 4.37
97 98 0.543174 AGTGGGTGTCTGTCTCTCCC 60.543 60.000 0.00 0.00 38.68 4.30
98 99 2.096248 CTAGTGGGTGTCTGTCTCTCC 58.904 57.143 0.00 0.00 0.00 3.71
99 100 1.474879 GCTAGTGGGTGTCTGTCTCTC 59.525 57.143 0.00 0.00 0.00 3.20
100 101 1.551452 GCTAGTGGGTGTCTGTCTCT 58.449 55.000 0.00 0.00 0.00 3.10
101 102 0.533032 GGCTAGTGGGTGTCTGTCTC 59.467 60.000 0.00 0.00 0.00 3.36
102 103 0.178932 TGGCTAGTGGGTGTCTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
103 104 0.037232 GTGGCTAGTGGGTGTCTGTC 60.037 60.000 0.00 0.00 0.00 3.51
104 105 1.481056 GGTGGCTAGTGGGTGTCTGT 61.481 60.000 0.00 0.00 0.00 3.41
105 106 1.194781 AGGTGGCTAGTGGGTGTCTG 61.195 60.000 0.00 0.00 0.00 3.51
106 107 0.473886 AAGGTGGCTAGTGGGTGTCT 60.474 55.000 0.00 0.00 0.00 3.41
107 108 1.272807 TAAGGTGGCTAGTGGGTGTC 58.727 55.000 0.00 0.00 0.00 3.67
108 109 1.559682 CATAAGGTGGCTAGTGGGTGT 59.440 52.381 0.00 0.00 0.00 4.16
109 110 1.747206 GCATAAGGTGGCTAGTGGGTG 60.747 57.143 0.00 0.00 0.00 4.61
110 111 0.546598 GCATAAGGTGGCTAGTGGGT 59.453 55.000 0.00 0.00 0.00 4.51
111 112 0.546122 TGCATAAGGTGGCTAGTGGG 59.454 55.000 0.00 0.00 0.00 4.61
112 113 2.017049 GTTGCATAAGGTGGCTAGTGG 58.983 52.381 0.00 0.00 0.00 4.00
113 114 2.991250 AGTTGCATAAGGTGGCTAGTG 58.009 47.619 0.00 0.00 0.00 2.74
114 115 3.775316 ACTAGTTGCATAAGGTGGCTAGT 59.225 43.478 0.00 0.00 34.62 2.57
115 116 4.122776 CACTAGTTGCATAAGGTGGCTAG 58.877 47.826 0.00 0.00 0.00 3.42
116 117 4.137116 CACTAGTTGCATAAGGTGGCTA 57.863 45.455 0.00 0.00 0.00 3.93
117 118 2.991250 CACTAGTTGCATAAGGTGGCT 58.009 47.619 0.00 0.00 0.00 4.75
129 130 1.995484 CCGACTGACATGCACTAGTTG 59.005 52.381 0.00 0.00 0.00 3.16
130 131 1.618837 ACCGACTGACATGCACTAGTT 59.381 47.619 0.00 0.00 0.00 2.24
131 132 1.067565 CACCGACTGACATGCACTAGT 60.068 52.381 0.00 0.00 0.00 2.57
132 133 1.633561 CACCGACTGACATGCACTAG 58.366 55.000 0.00 0.00 0.00 2.57
133 134 0.246360 CCACCGACTGACATGCACTA 59.754 55.000 0.00 0.00 0.00 2.74
134 135 1.004560 CCACCGACTGACATGCACT 60.005 57.895 0.00 0.00 0.00 4.40
135 136 0.602638 TTCCACCGACTGACATGCAC 60.603 55.000 0.00 0.00 0.00 4.57
136 137 0.602638 GTTCCACCGACTGACATGCA 60.603 55.000 0.00 0.00 0.00 3.96
137 138 1.298859 GGTTCCACCGACTGACATGC 61.299 60.000 0.00 0.00 0.00 4.06
138 139 0.034756 TGGTTCCACCGACTGACATG 59.965 55.000 0.00 0.00 42.58 3.21
139 140 0.321671 CTGGTTCCACCGACTGACAT 59.678 55.000 0.00 0.00 42.58 3.06
140 141 1.046472 ACTGGTTCCACCGACTGACA 61.046 55.000 0.00 0.00 42.58 3.58
141 142 0.319641 GACTGGTTCCACCGACTGAC 60.320 60.000 0.00 0.00 42.58 3.51
142 143 0.469331 AGACTGGTTCCACCGACTGA 60.469 55.000 0.00 0.00 42.58 3.41
143 144 0.038159 GAGACTGGTTCCACCGACTG 60.038 60.000 0.00 0.00 42.58 3.51
144 145 0.469331 TGAGACTGGTTCCACCGACT 60.469 55.000 0.00 0.00 42.58 4.18
145 146 0.319641 GTGAGACTGGTTCCACCGAC 60.320 60.000 0.00 0.00 42.58 4.79
146 147 1.802337 CGTGAGACTGGTTCCACCGA 61.802 60.000 0.00 0.00 42.58 4.69
147 148 1.372997 CGTGAGACTGGTTCCACCG 60.373 63.158 0.00 0.00 42.58 4.94
148 149 0.963962 TACGTGAGACTGGTTCCACC 59.036 55.000 0.00 0.00 39.22 4.61
149 150 2.673833 CTTACGTGAGACTGGTTCCAC 58.326 52.381 0.00 0.00 0.00 4.02
150 151 1.000506 GCTTACGTGAGACTGGTTCCA 59.999 52.381 12.13 0.00 0.00 3.53
151 152 1.711206 GCTTACGTGAGACTGGTTCC 58.289 55.000 12.13 0.00 0.00 3.62
152 153 1.337821 CGCTTACGTGAGACTGGTTC 58.662 55.000 12.13 0.00 33.53 3.62
153 154 3.491581 CGCTTACGTGAGACTGGTT 57.508 52.632 12.13 0.00 33.53 3.67
165 166 2.589841 CCGACTTTACACGTACGCTTAC 59.410 50.000 16.72 0.00 0.00 2.34
166 167 2.225491 ACCGACTTTACACGTACGCTTA 59.775 45.455 16.72 3.53 0.00 3.09
167 168 1.001378 ACCGACTTTACACGTACGCTT 60.001 47.619 16.72 4.66 0.00 4.68
168 169 0.593128 ACCGACTTTACACGTACGCT 59.407 50.000 16.72 2.91 0.00 5.07
169 170 0.977674 GACCGACTTTACACGTACGC 59.022 55.000 16.72 0.00 0.00 4.42
170 171 1.606606 GGACCGACTTTACACGTACG 58.393 55.000 15.01 15.01 0.00 3.67
171 172 1.606606 CGGACCGACTTTACACGTAC 58.393 55.000 8.64 0.00 0.00 3.67
172 173 0.521291 CCGGACCGACTTTACACGTA 59.479 55.000 17.49 0.00 0.00 3.57
173 174 1.286880 CCGGACCGACTTTACACGT 59.713 57.895 17.49 0.00 0.00 4.49
174 175 1.444895 CCCGGACCGACTTTACACG 60.445 63.158 17.49 0.00 0.00 4.49
175 176 1.739196 GCCCGGACCGACTTTACAC 60.739 63.158 17.49 0.00 0.00 2.90
176 177 2.658422 GCCCGGACCGACTTTACA 59.342 61.111 17.49 0.00 0.00 2.41
177 178 2.125391 GGCCCGGACCGACTTTAC 60.125 66.667 17.49 0.00 0.00 2.01
178 179 2.604079 TGGCCCGGACCGACTTTA 60.604 61.111 17.49 0.00 0.00 1.85
179 180 4.324991 GTGGCCCGGACCGACTTT 62.325 66.667 17.49 0.00 0.00 2.66
182 183 4.754667 GAAGTGGCCCGGACCGAC 62.755 72.222 17.49 5.27 0.00 4.79
184 185 3.622060 AATGAAGTGGCCCGGACCG 62.622 63.158 6.99 6.99 0.00 4.79
185 186 1.749258 GAATGAAGTGGCCCGGACC 60.749 63.158 0.73 0.00 0.00 4.46
186 187 1.749258 GGAATGAAGTGGCCCGGAC 60.749 63.158 0.73 0.00 0.00 4.79
187 188 1.570857 ATGGAATGAAGTGGCCCGGA 61.571 55.000 0.73 0.00 0.00 5.14
188 189 1.076777 ATGGAATGAAGTGGCCCGG 60.077 57.895 0.00 0.00 0.00 5.73
189 190 4.664062 ATGGAATGAAGTGGCCCG 57.336 55.556 0.00 0.00 0.00 6.13
200 201 0.538057 ATTCGGCGCCATCATGGAAT 60.538 50.000 28.98 21.61 40.96 3.01
201 202 1.152984 ATTCGGCGCCATCATGGAA 60.153 52.632 28.98 20.27 40.96 3.53
202 203 1.597854 GATTCGGCGCCATCATGGA 60.598 57.895 28.98 11.71 40.96 3.41
203 204 1.446516 TTGATTCGGCGCCATCATGG 61.447 55.000 28.98 9.08 41.55 3.66
204 205 0.040692 CTTGATTCGGCGCCATCATG 60.041 55.000 28.98 23.99 29.45 3.07
205 206 0.179048 TCTTGATTCGGCGCCATCAT 60.179 50.000 28.98 14.80 29.45 2.45
206 207 0.179048 ATCTTGATTCGGCGCCATCA 60.179 50.000 28.98 24.99 0.00 3.07
207 208 1.795768 TATCTTGATTCGGCGCCATC 58.204 50.000 28.98 22.57 0.00 3.51
208 209 2.146342 CTTATCTTGATTCGGCGCCAT 58.854 47.619 28.98 13.97 0.00 4.40
209 210 1.138069 TCTTATCTTGATTCGGCGCCA 59.862 47.619 28.98 8.41 0.00 5.69
210 211 1.527311 GTCTTATCTTGATTCGGCGCC 59.473 52.381 19.07 19.07 0.00 6.53
211 212 2.474816 AGTCTTATCTTGATTCGGCGC 58.525 47.619 0.00 0.00 0.00 6.53
212 213 4.861210 ACTAGTCTTATCTTGATTCGGCG 58.139 43.478 0.00 0.00 0.00 6.46
213 214 6.360148 CGTTACTAGTCTTATCTTGATTCGGC 59.640 42.308 0.00 0.00 0.00 5.54
214 215 6.856938 CCGTTACTAGTCTTATCTTGATTCGG 59.143 42.308 0.00 0.00 0.00 4.30
215 216 6.360148 GCCGTTACTAGTCTTATCTTGATTCG 59.640 42.308 0.00 0.00 0.00 3.34
216 217 7.201145 TGCCGTTACTAGTCTTATCTTGATTC 58.799 38.462 0.00 0.00 0.00 2.52
217 218 7.108841 TGCCGTTACTAGTCTTATCTTGATT 57.891 36.000 0.00 0.00 0.00 2.57
218 219 6.710597 TGCCGTTACTAGTCTTATCTTGAT 57.289 37.500 0.00 0.00 0.00 2.57
219 220 6.152323 ACTTGCCGTTACTAGTCTTATCTTGA 59.848 38.462 0.00 0.00 0.00 3.02
220 221 6.331061 ACTTGCCGTTACTAGTCTTATCTTG 58.669 40.000 0.00 0.00 0.00 3.02
221 222 6.527057 ACTTGCCGTTACTAGTCTTATCTT 57.473 37.500 0.00 0.00 0.00 2.40
222 223 7.636150 TTACTTGCCGTTACTAGTCTTATCT 57.364 36.000 0.00 0.00 0.00 1.98
223 224 8.868635 ATTTACTTGCCGTTACTAGTCTTATC 57.131 34.615 0.00 0.00 0.00 1.75
224 225 9.095065 CAATTTACTTGCCGTTACTAGTCTTAT 57.905 33.333 0.00 0.00 0.00 1.73
225 226 8.306038 TCAATTTACTTGCCGTTACTAGTCTTA 58.694 33.333 0.00 0.00 34.66 2.10
226 227 7.117379 GTCAATTTACTTGCCGTTACTAGTCTT 59.883 37.037 0.00 0.00 34.66 3.01
227 228 6.589139 GTCAATTTACTTGCCGTTACTAGTCT 59.411 38.462 0.00 0.00 34.66 3.24
228 229 6.366877 TGTCAATTTACTTGCCGTTACTAGTC 59.633 38.462 0.00 0.00 34.66 2.59
229 230 6.225318 TGTCAATTTACTTGCCGTTACTAGT 58.775 36.000 0.00 0.00 34.66 2.57
230 231 6.715344 TGTCAATTTACTTGCCGTTACTAG 57.285 37.500 0.00 0.00 34.66 2.57
231 232 7.493743 TTTGTCAATTTACTTGCCGTTACTA 57.506 32.000 0.00 0.00 34.66 1.82
232 233 6.380095 TTTGTCAATTTACTTGCCGTTACT 57.620 33.333 0.00 0.00 34.66 2.24
233 234 7.631915 ATTTTGTCAATTTACTTGCCGTTAC 57.368 32.000 0.00 0.00 34.66 2.50
234 235 7.921214 TCAATTTTGTCAATTTACTTGCCGTTA 59.079 29.630 0.00 0.00 34.66 3.18
235 236 6.758886 TCAATTTTGTCAATTTACTTGCCGTT 59.241 30.769 0.00 0.00 34.66 4.44
236 237 6.200097 GTCAATTTTGTCAATTTACTTGCCGT 59.800 34.615 0.00 0.00 34.66 5.68
237 238 6.580476 GTCAATTTTGTCAATTTACTTGCCG 58.420 36.000 0.00 0.00 34.66 5.69
238 239 6.580476 CGTCAATTTTGTCAATTTACTTGCC 58.420 36.000 0.00 0.00 34.66 4.52
239 240 6.064525 GCGTCAATTTTGTCAATTTACTTGC 58.935 36.000 0.00 0.00 34.66 4.01
240 241 7.056800 GTGCGTCAATTTTGTCAATTTACTTG 58.943 34.615 0.00 0.00 36.09 3.16
241 242 6.754209 TGTGCGTCAATTTTGTCAATTTACTT 59.246 30.769 0.00 0.00 0.00 2.24
242 243 6.198216 GTGTGCGTCAATTTTGTCAATTTACT 59.802 34.615 0.00 0.00 0.00 2.24
243 244 6.020281 TGTGTGCGTCAATTTTGTCAATTTAC 60.020 34.615 0.00 0.00 0.00 2.01
244 245 6.036470 TGTGTGCGTCAATTTTGTCAATTTA 58.964 32.000 0.00 0.00 0.00 1.40
245 246 4.867047 TGTGTGCGTCAATTTTGTCAATTT 59.133 33.333 0.00 0.00 0.00 1.82
246 247 4.428209 TGTGTGCGTCAATTTTGTCAATT 58.572 34.783 0.00 0.00 0.00 2.32
247 248 4.039151 TGTGTGCGTCAATTTTGTCAAT 57.961 36.364 0.00 0.00 0.00 2.57
248 249 3.494045 TGTGTGCGTCAATTTTGTCAA 57.506 38.095 0.00 0.00 0.00 3.18
249 250 3.175152 GTTGTGTGCGTCAATTTTGTCA 58.825 40.909 0.00 0.00 0.00 3.58
250 251 3.175152 TGTTGTGTGCGTCAATTTTGTC 58.825 40.909 0.00 0.00 0.00 3.18
251 252 3.223423 TGTTGTGTGCGTCAATTTTGT 57.777 38.095 0.00 0.00 0.00 2.83
252 253 4.775440 ATTGTTGTGTGCGTCAATTTTG 57.225 36.364 0.00 0.00 0.00 2.44
253 254 5.121454 ACAAATTGTTGTGTGCGTCAATTTT 59.879 32.000 10.59 3.21 46.40 1.82
254 255 4.629200 ACAAATTGTTGTGTGCGTCAATTT 59.371 33.333 0.00 8.31 46.40 1.82
255 256 4.180057 ACAAATTGTTGTGTGCGTCAATT 58.820 34.783 0.00 0.00 46.40 2.32
256 257 3.779759 ACAAATTGTTGTGTGCGTCAAT 58.220 36.364 0.00 0.00 46.40 2.57
257 258 3.223423 ACAAATTGTTGTGTGCGTCAA 57.777 38.095 0.00 0.00 46.40 3.18
258 259 2.929531 ACAAATTGTTGTGTGCGTCA 57.070 40.000 0.00 0.00 46.40 4.35
269 270 3.874543 TGCACGAGTAGAACACAAATTGT 59.125 39.130 0.00 0.00 41.74 2.71
270 271 4.466567 TGCACGAGTAGAACACAAATTG 57.533 40.909 0.00 0.00 0.00 2.32
271 272 6.795098 TTATGCACGAGTAGAACACAAATT 57.205 33.333 0.00 0.00 0.00 1.82
272 273 6.795098 TTTATGCACGAGTAGAACACAAAT 57.205 33.333 0.00 0.00 0.00 2.32
273 274 6.606234 TTTTATGCACGAGTAGAACACAAA 57.394 33.333 0.00 0.00 0.00 2.83
274 275 6.423862 GTTTTTATGCACGAGTAGAACACAA 58.576 36.000 0.00 0.00 0.00 3.33
275 276 5.332732 CGTTTTTATGCACGAGTAGAACACA 60.333 40.000 0.00 0.00 38.76 3.72
276 277 5.070862 CGTTTTTATGCACGAGTAGAACAC 58.929 41.667 0.00 0.00 38.76 3.32
277 278 4.746115 ACGTTTTTATGCACGAGTAGAACA 59.254 37.500 0.00 0.00 39.76 3.18
278 279 5.118203 AGACGTTTTTATGCACGAGTAGAAC 59.882 40.000 0.00 0.00 39.76 3.01
279 280 5.224888 AGACGTTTTTATGCACGAGTAGAA 58.775 37.500 0.00 0.00 39.76 2.10
280 281 4.801891 AGACGTTTTTATGCACGAGTAGA 58.198 39.130 0.00 0.00 39.76 2.59
281 282 5.511088 AAGACGTTTTTATGCACGAGTAG 57.489 39.130 0.00 0.00 39.76 2.57
282 283 5.919707 TGTAAGACGTTTTTATGCACGAGTA 59.080 36.000 0.00 0.00 39.76 2.59
283 284 4.746115 TGTAAGACGTTTTTATGCACGAGT 59.254 37.500 0.00 0.00 39.76 4.18
284 285 5.258685 TGTAAGACGTTTTTATGCACGAG 57.741 39.130 0.00 0.00 39.76 4.18
285 286 5.849357 ATGTAAGACGTTTTTATGCACGA 57.151 34.783 0.00 0.00 39.76 4.35
286 287 7.163520 CCATAATGTAAGACGTTTTTATGCACG 59.836 37.037 0.00 0.00 42.29 5.34
287 288 7.431084 CCCATAATGTAAGACGTTTTTATGCAC 59.569 37.037 0.00 0.00 0.00 4.57
288 289 7.337184 TCCCATAATGTAAGACGTTTTTATGCA 59.663 33.333 0.00 0.00 0.00 3.96
289 290 7.642586 GTCCCATAATGTAAGACGTTTTTATGC 59.357 37.037 0.00 0.00 0.00 3.14
290 291 7.849026 CGTCCCATAATGTAAGACGTTTTTATG 59.151 37.037 0.00 0.00 43.89 1.90
291 292 7.011669 CCGTCCCATAATGTAAGACGTTTTTAT 59.988 37.037 9.63 0.00 46.62 1.40
292 293 6.313411 CCGTCCCATAATGTAAGACGTTTTTA 59.687 38.462 9.63 0.00 46.62 1.52
293 294 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
294 295 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
295 296 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
296 297 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
297 298 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
299 300 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
300 301 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
301 302 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
302 303 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
303 304 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
304 305 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
305 306 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
306 307 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
307 308 4.687262 ATATACTCCCTCCGTCCCATAA 57.313 45.455 0.00 0.00 0.00 1.90
308 309 7.470180 TTATATATACTCCCTCCGTCCCATA 57.530 40.000 0.00 0.00 0.00 2.74
309 310 4.901785 ATATATACTCCCTCCGTCCCAT 57.098 45.455 0.00 0.00 0.00 4.00
310 311 5.801720 TTATATATACTCCCTCCGTCCCA 57.198 43.478 0.00 0.00 0.00 4.37
311 312 7.949006 ACATATTATATATACTCCCTCCGTCCC 59.051 40.741 0.00 0.00 0.00 4.46
312 313 8.937207 ACATATTATATATACTCCCTCCGTCC 57.063 38.462 0.00 0.00 0.00 4.79
314 315 9.710818 ACAACATATTATATATACTCCCTCCGT 57.289 33.333 0.00 0.00 0.00 4.69
376 380 3.495001 CCCGAAACAGTTTTCAGACTCTC 59.505 47.826 0.00 0.00 41.22 3.20
386 390 2.702592 TGTCAGACCCGAAACAGTTT 57.297 45.000 0.00 0.00 0.00 2.66
396 400 2.558359 CCAAATTCCACTTGTCAGACCC 59.442 50.000 0.00 0.00 0.00 4.46
461 465 6.543100 GGACGAGGAGGATATATTAGTACCAG 59.457 46.154 0.00 0.00 0.00 4.00
463 467 5.526846 CGGACGAGGAGGATATATTAGTACC 59.473 48.000 0.00 0.00 0.00 3.34
464 468 5.526846 CCGGACGAGGAGGATATATTAGTAC 59.473 48.000 0.00 0.00 0.00 2.73
465 469 5.678583 CCGGACGAGGAGGATATATTAGTA 58.321 45.833 0.00 0.00 0.00 1.82
466 470 4.525024 CCGGACGAGGAGGATATATTAGT 58.475 47.826 0.00 0.00 0.00 2.24
467 471 3.315749 GCCGGACGAGGAGGATATATTAG 59.684 52.174 5.05 0.00 0.00 1.73
468 472 3.285484 GCCGGACGAGGAGGATATATTA 58.715 50.000 5.05 0.00 0.00 0.98
469 473 2.100989 GCCGGACGAGGAGGATATATT 58.899 52.381 5.05 0.00 0.00 1.28
470 474 1.685491 GGCCGGACGAGGAGGATATAT 60.685 57.143 5.05 0.00 0.00 0.86
471 475 0.323178 GGCCGGACGAGGAGGATATA 60.323 60.000 5.05 0.00 0.00 0.86
472 476 1.606889 GGCCGGACGAGGAGGATAT 60.607 63.158 5.05 0.00 0.00 1.63
473 477 2.203451 GGCCGGACGAGGAGGATA 60.203 66.667 5.05 0.00 0.00 2.59
561 567 4.286320 GGGCGATCGAGATGCGGT 62.286 66.667 21.57 0.00 41.33 5.68
606 616 4.527583 GCTGAGGCTGAGAGGCGG 62.528 72.222 4.75 0.00 46.58 6.13
613 623 1.381056 GAGGAGAGGCTGAGGCTGA 60.381 63.158 15.18 0.00 38.98 4.26
614 624 2.433994 GGAGGAGAGGCTGAGGCTG 61.434 68.421 15.18 0.00 38.98 4.85
615 625 2.042025 GGAGGAGAGGCTGAGGCT 60.042 66.667 8.79 8.79 42.48 4.58
616 626 3.535962 CGGAGGAGAGGCTGAGGC 61.536 72.222 0.00 0.00 37.82 4.70
617 627 1.152567 ATCGGAGGAGAGGCTGAGG 60.153 63.158 0.00 0.00 0.00 3.86
618 628 1.178534 GGATCGGAGGAGAGGCTGAG 61.179 65.000 0.00 0.00 0.00 3.35
619 629 1.152652 GGATCGGAGGAGAGGCTGA 60.153 63.158 0.00 0.00 0.00 4.26
620 630 2.206536 GGGATCGGAGGAGAGGCTG 61.207 68.421 0.00 0.00 0.00 4.85
628 644 4.344474 GCGCGTAGGGATCGGAGG 62.344 72.222 8.43 0.00 46.37 4.30
654 670 7.148639 CGTATGCATGAACAGTTGTAAGTAGTT 60.149 37.037 10.16 0.00 0.00 2.24
660 676 6.020201 CGTATCGTATGCATGAACAGTTGTAA 60.020 38.462 10.16 0.00 0.00 2.41
661 677 5.457473 CGTATCGTATGCATGAACAGTTGTA 59.543 40.000 10.16 0.00 0.00 2.41
662 678 4.267690 CGTATCGTATGCATGAACAGTTGT 59.732 41.667 10.16 0.00 0.00 3.32
663 679 4.751172 CGTATCGTATGCATGAACAGTTG 58.249 43.478 10.16 0.00 0.00 3.16
674 690 3.391631 TGCGCGCGTATCGTATGC 61.392 61.111 32.35 11.60 41.07 3.14
676 692 2.728383 GGTGCGCGCGTATCGTAT 60.728 61.111 32.35 0.00 41.07 3.06
807 857 1.202758 ACGGAGGTGTGATGCTTGAAA 60.203 47.619 0.00 0.00 0.00 2.69
808 858 0.396435 ACGGAGGTGTGATGCTTGAA 59.604 50.000 0.00 0.00 0.00 2.69
809 859 0.037326 GACGGAGGTGTGATGCTTGA 60.037 55.000 0.00 0.00 0.00 3.02
810 860 1.021390 GGACGGAGGTGTGATGCTTG 61.021 60.000 0.00 0.00 0.00 4.01
811 861 1.296715 GGACGGAGGTGTGATGCTT 59.703 57.895 0.00 0.00 0.00 3.91
836 886 1.066573 CCTGGGTGCTAGTGAAGTGAG 60.067 57.143 0.00 0.00 0.00 3.51
995 1045 2.072487 CCCGGGGAGTCCATGATGT 61.072 63.158 14.71 0.00 34.36 3.06
996 1046 2.831770 CCCGGGGAGTCCATGATG 59.168 66.667 14.71 0.00 34.36 3.07
997 1047 3.171388 GCCCGGGGAGTCCATGAT 61.171 66.667 25.28 0.00 34.36 2.45
998 1048 4.731853 TGCCCGGGGAGTCCATGA 62.732 66.667 25.28 0.00 34.36 3.07
1133 1183 3.654173 TACCTGCTCAGCTGCTGCG 62.654 63.158 24.38 19.63 45.42 5.18
1689 1739 1.677966 AGCGACGCTACTCCCTTCA 60.678 57.895 23.15 0.00 36.99 3.02
1713 1763 0.325296 ATACTCGGGAGGTGCTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
1828 1881 7.895759 AGAAATATAGCTCAAACCTTGCAAAA 58.104 30.769 0.00 0.00 0.00 2.44
1900 1953 2.917971 GGACTCGATCGACAACAAGAAG 59.082 50.000 15.15 3.58 0.00 2.85
1901 1954 2.557056 AGGACTCGATCGACAACAAGAA 59.443 45.455 15.15 0.00 0.00 2.52
1902 1955 2.160205 AGGACTCGATCGACAACAAGA 58.840 47.619 15.15 0.00 0.00 3.02
1903 1956 2.638556 AGGACTCGATCGACAACAAG 57.361 50.000 15.15 5.95 0.00 3.16
1904 1957 4.157105 TCATAAGGACTCGATCGACAACAA 59.843 41.667 15.15 0.00 0.00 2.83
1905 1958 3.692593 TCATAAGGACTCGATCGACAACA 59.307 43.478 15.15 0.00 0.00 3.33
1906 1959 4.288670 TCATAAGGACTCGATCGACAAC 57.711 45.455 15.15 6.89 0.00 3.32
1909 1962 5.365403 AGAATCATAAGGACTCGATCGAC 57.635 43.478 15.15 5.35 0.00 4.20
1930 1983 4.159244 ACTCACTGACCTAGGTAGCTAG 57.841 50.000 16.29 19.98 0.00 3.42
1936 1989 2.309162 TCAGCTACTCACTGACCTAGGT 59.691 50.000 16.26 16.26 39.21 3.08
2039 2096 1.680735 GGACATGAGCAAAACACCACA 59.319 47.619 0.00 0.00 0.00 4.17
2040 2097 1.680735 TGGACATGAGCAAAACACCAC 59.319 47.619 0.00 0.00 0.00 4.16
2043 2100 4.370917 ACATTTGGACATGAGCAAAACAC 58.629 39.130 0.00 0.00 0.00 3.32
2081 2138 2.779755 TCTTGCGGTTATGTCACCAT 57.220 45.000 0.00 0.00 36.49 3.55
2082 2139 2.779755 ATCTTGCGGTTATGTCACCA 57.220 45.000 0.00 0.00 36.49 4.17
2083 2140 3.438781 TCAAATCTTGCGGTTATGTCACC 59.561 43.478 0.00 0.00 0.00 4.02
2085 2142 3.689161 CCTCAAATCTTGCGGTTATGTCA 59.311 43.478 0.00 0.00 30.96 3.58
2086 2143 3.689649 ACCTCAAATCTTGCGGTTATGTC 59.310 43.478 0.00 0.00 45.99 3.06
2087 2144 3.686016 ACCTCAAATCTTGCGGTTATGT 58.314 40.909 0.00 0.00 45.99 2.29
2088 2145 5.811399 TTACCTCAAATCTTGCGGTTATG 57.189 39.130 6.38 0.00 45.99 1.90
2089 2146 7.257722 CAATTTACCTCAAATCTTGCGGTTAT 58.742 34.615 6.38 0.00 45.99 1.89
2129 2191 2.305009 GGAGAGATTCCTTGCAATGGG 58.695 52.381 0.00 0.00 43.16 4.00
2143 2205 8.742777 CATGGTAATCAAAAGAAAATGGAGAGA 58.257 33.333 0.00 0.00 0.00 3.10
2178 2240 7.047891 TGTTTGGCAAGAACTATGTATAGAGG 58.952 38.462 0.00 0.00 34.50 3.69
2225 2289 0.242825 GCCAGTACACAGTACAGCGA 59.757 55.000 9.68 0.00 0.00 4.93
2366 2430 2.281539 TGAGGAGGTCGTACACTTGA 57.718 50.000 0.00 0.00 0.00 3.02
2368 2432 1.617357 GGTTGAGGAGGTCGTACACTT 59.383 52.381 0.00 0.00 0.00 3.16
2371 2435 0.963962 GTGGTTGAGGAGGTCGTACA 59.036 55.000 0.00 0.00 0.00 2.90
2394 2458 4.319839 CGCATGCTAATTACTCTCTCTCGA 60.320 45.833 17.13 0.00 0.00 4.04
2396 2460 4.679197 CACGCATGCTAATTACTCTCTCTC 59.321 45.833 17.13 0.00 0.00 3.20
2398 2462 4.963237 CACGCATGCTAATTACTCTCTC 57.037 45.455 17.13 0.00 0.00 3.20
2509 2598 0.625849 AAATCCAGGGCATTCGGTCT 59.374 50.000 0.00 0.00 0.00 3.85
2558 2647 3.119459 TCGATCTGCCTTGAGTTCAGTAC 60.119 47.826 0.00 0.00 0.00 2.73
2615 2706 3.807538 GGCCGCATGCAGTGAGTG 61.808 66.667 19.57 0.00 43.89 3.51
2688 2779 4.335647 AGAGCAACAGTGGGCCGG 62.336 66.667 0.00 0.00 0.00 6.13
2689 2780 2.743928 GAGAGCAACAGTGGGCCG 60.744 66.667 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.