>input_sequence_70266
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---------ATGGACTCCCCGGGCACCGCCGGCCCTCCGTCCTCCTCCGCCGCGGGCGACGCGCAGCAGCCGGTGGCGCT
GGCGGTGGCGCCCCCGCAGCCGCAGCCGATGCCCCCGCCGCCGCAGCCGATGCCCCCGCCGCCGCAGCAGCTGAGCAGGT
ACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCCTGCAGTACCTGCGCAACCACCGCCCCCCGCTGACGCTGGCGCGC
TGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCGTCCGGCTGCGC
GCACTACGGCCAGCCCAGCCCGCCCGCGCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCTCCCTCGACGCGCTCATCG
GCCGCCTCCGCGCCGCCTACGATGAGAGCGGCCACGCGCCCGAGTCCAACCCCTTCGCCGCGCGCGCCGTGCGGATCTAC
CTCCGCGAGGTCCGCGACGGCCAGGCCAAGGCCAGGGGCATACCCTACGAGAAGAAGAAGCGCAAGCGCACGCCCGCGCT
CCCTGCCGGCGCTGCCGGGGAGGGGGCGAGCTCATCGTCGGTCGCCACGGCTGTCCCGGGCCGCGGCGAAGGAGGAGAGC
AAAGTGGCAGCGGCACCACGGCGGCTTCACCACTGCCGTCACCCACCGGCGCCCAGGCTGAAGGGAGTAGCGTCGCTGCT
GCTC---CAAGCACCTCCCGAGTATAG-----------------------------------------------------
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>chr1A_1_TraesCS1A01G296900
GAACGTTTCTTATGTACGTCAAAACCACAATGTGATATGCCAATTTCTATTTACCCTTCATAAGGACCCTTTTCATCGAA
TCCGATCCGACTAAAGTGGGAGAGACAGACACCCACTAGCCACCTTATGCAACTAGTGCATGTCAGTCGGTGGAACCAGT
CTCACGTAAGCGTACGTGTAAAGTCGGTCCGGGCCACTTCATTCCATGATGGCGCCGAATCAAGATAAGACTAGTAACGG
CAAGTAAATTGACAAAATTGACGCACACAACAATTTGTGTTCTACTCGTGCATAAAAACGTCTTACATTATGGGACGGAG
GGAGTATATATAATATGTTGTTGAAAACATATAAAAATGTTTTATCTTTCTTA---AAAGAGAGTCTGAAAACTGTTTCG
GGTCTGACAAGTGGAATTTGGAATAGCAAAACAATGCATGTTACCAGGGCACTGATCAGTACTACTGGTACTAATATATC
CTC--CTCGTCCGGCCCAGCCGACACCCGCCACTGTTGGACACAGCATGACCTCAACGCTGCCACAATCCGACGCGCACG
AGCGATACCGCATCTCGATCGCCCGCT----GGCCGGCCGGCCATGCAACAGCCGCCGCCTCTCAGCCTCAGCCT-----
-CTCCTCCGATCCCTACGCGCACATGCACAACTACTTACAACTGTTCATGCATACGATACGCGCGCACCGCAC-------
-----GTACG------------TAGCGCGCAGGGAATTGTTCCGGCGACGGCCGGGGGCCACCAACCACGTGAATGCTCC
CCGGCCCCCACACCGCGCTCCC----------CTCCCTCCCCAGCTATCACCTTCATTTCAAGCATCACACCTCCGTCCG
TCCCCCTCACTTCACTAGCACCCAGGTTCACCTCCCCGCCAACGTCGCTCTCGGCCCGTCCGCCCGCCCGCTCCCCGCGC
GCGTCTCCACTACCCCCTCCCTGCCAGATCGCCTGCTCCAGCCGCGCGCGGCGGCCGGCCGGCGGGCGGGCTAACCTCCA
AGCCACATCATGGACTCCCCGGGCACCGCCGGCCCTCCGTCCTCCTCCGCCGCGGGCGACGCGCAGCAGCCGGTGGCGCT
GGCGGTGGCGCCCCCGCAGCCGCAGCCGATGCCCCCGCCGCCGCAGCCGATGCCCCCGCCGCCGCAGCAGCTGAGCAGGT
ACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCCTGCAGTACCTGCGCAACCACCGCCCCCCGCTGACGCTGGCGCGC
TGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCGTCCGGCTGCGC
GCACTACGGCCAGCCCAGCCCGCCCGCGCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCTCCCTCGACGCGCTCATCG
GCCGCCTCCGCGCCGCCTACGATGAGAGCGGCCACGCGCCCGAGTCCAACCCCTTCGCCGCGCGCGCCGTGCGGATCTAC
CTCCGCGAGGTCCGCGACGGCCAGGCCAAGGCCAGGGGCATACCCTACGAGAAGAAGAAGCGCAAGCGCACGCCCGCGCT
CCCTGCCGGCGCTGCCGGGGAGGGGGCGAGCTCATCGTCGGTCGCCACGGCTGTCCCGGGCCGCGGCGAAGGAGGAGAGC
AAAGTGGCAGCGGCACCACGGCGGCTTCACCACTGCCGTCACCCACCGGCGCCCAGGCTGAAGGGAGTAGCGTCGCTGCT
GCTC---CAAGCACCTCCCGAGTATAGTAGAATCAATCACCTCGCCGACAAGAGACCTCCCTCCTTGTCGTATTTGCTTC
CCTACGTACGTGTCGGTAATGTATACATCGTTCGCGCTTATTTTGCAAGGTTTGAGCTATATTTCTCTTGCCATTTGATT
TCACTATCCTTCTCCTTTTTCTTGTTTAATTTCTTCTTGTTGTCGATCGAGTCCTTATGATTCTAGCTA---CCTAGGTC
AGTGAGTAGCTGAGTAAGTATGTGCCAGTCGGCAAATGGTAATTGAGATTTGAATATTGGAGTTTTGGGAGCTGAACAAT
TGATCAGTGCT-AGCTGTGGTGTTTTGCTCATGTCCAAATGTCCCATACATACCCTCATGGTGACA-----TAACCGCAA
GATTTGAGGTAAATTGGGTATTTAAGATCTCCCATTGCAAGGAATCTCTCCATTTTCTTTTGATTACCATGCATTGTTTC
--CTCTATACATAGTTCTTGCCAAACATTTGGACACTGCTACAGTGAGTCGCTGTACTGTGTACTGGCACATGCATTTTC
ACTTCAAGTTTGTGTTCCACTAATACTGTGCAAATGGAGACATACGCAGGTGCAAATTAAAAGCTTGCATGAATGGTGCA
TGTACTCCTCTGGTGCACACATACAGTAGTCAAGTGTACGACCTCCTCAACCACATTTCGAGAGAG--------------
-----------AGTAATTAGCATGCGTGCATTTCTTAATTTAATTAGCTGTAACTTCAGTTTATTTTTACTTGATAAACT
AGTCAAATTTGAACCTGTAAAATCTGATCTATAATTGAGACCGAATGCCCTGGATTTTGATCCGAGGGTACTGCTTGAAA
GGAGGAGT--ACTGAACTCAAGGCAGATCGATCTTCTCTGGTCCCCGGCCGGATGGGACACTGTACACTCACTGCATGCG
GCCGGGGAGTGCTCTAGGCCCATGGCGGCGGCGACCACACGTGCGGGCGCGCTACCGGCCGGCCCACTGTTGCTCTCTCT
CCAAAGATCTCGTCCCCCACTCCAT
>chr1B_329
TATACA--------------------------------------------------------------------------
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-------------TATGTTGTTGCAAACATATAAAAATGCTTCATCTTTCTTATTGAAAAAGAGTCTGATAACTGTTTCA
GGTCTGACAAGTGGAATTTGGAATAGCAAAC-----CATGTTACCAT-GTACTGATCAGTACTAATATA-----------
-TC--CTCGTCCGGCCCAGCCGACACCTGCATCTGTTCGACACCGCACAACCTCAACGCTGCCACA-TCCGATGCACACG
AACGATGCCGCATCTCGATCGGCCGCTGGCCGGCCGGCCGGCCATGCAACAGCCGGCGCCTC--------AGCCT-----
-CTACTCCGATCCCTAGGCGCACATGCACTACTAC----AACTGTTCATCC-----ATACGCGCGCACCGCAC-------
-----GTACGCTCTGGCGTACGTAGCGCGCAGGGAATTGTTCCGGCGACGGCCGGGGGCCACCAACCACGTGAATGCTCC
CCGGCCCCCACACCGCGCTCCCCTCCCCTC----CCCTCCCCAGCTATCACCTTCA-----AGCATCACGCCTCCGTCCG
TCCCCTTCACTTCACTAGCACCCAGCTTCGCCTCCCCGCCAACGTCGCTCTCGGCCCATCCGCCCGCCCGCTCCCCGCGC
GCGTCTCCACTACCCCCTCCCTGCCAGATCGCCCGCTCCAGCCGCGCGCGGCGGCCGGCC----GGCGGGCTAACCTCCA
AGCCG---CATGGACTCCCCGGGCACCGCCGGCCCTCCGTCCTCCTCC---GCGGGCGACGCGCAGCAGCCGGTGGCGCT
GGCGGTGGCGCCCCCGCAGCCGCAGCCGCATCCCCCGCCGCCGCA------------------GCAGCAGCTGAGCAGGT
ACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCCTGCAGTACCTGCGCAACCACCGCCCCCCGCTGACGCTGGCGCGC
TGCAGCGGCGCTCACGTCATCGAGTTCCTCAAGTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCGTCCGGCTGCGC
GCACTACGGCCAGCCCAGCCCGCCCGCGCCCTGCCCCTGCCCACTCCGCCAGGCCTGGGGCTCCCTCGACGCTCTCATCG
GCCGCCTCCGCGCCGCCTACGAGGAGAGCGGCCACGCGCCCGAGTCCAACCCCTTCGCCGCGCGTGCCGTGCGGATCTAC
CTCCGCGAGGTCCGCGACGGCCAGGCCAAGGCCAGGGGCATACCCTACGAGAAGAAGAAGCGCAAGCGCACGCCGGCGCT
CCCTGCCGGCGGTGCCGGGGAGGGAACGAACTCGTCGTCGGCCGCCGCGGCTGTCCCTGGACGCGGTGAAGGTGGAGAGC
AAAGTGGCAGCGGCACCGCGGCGGCTTCGCCACTGCCGTCACCCACCGGCGCCCAGGCGGAAGGGAGTAGCGTCACCGCT
GCACCAACAAGCACCTCCCGAGTATAGTAGAATCAATCACCTCGCCGACAAGAGACCTCCCTCCTTGTCGTATTTGCTTC
CCTACGTACGTGTCGGTAATGTATACATCGTTCGCGCTTAATTTGCAAGGTTTGAGCTATATTTCTCTTGCCATTTGATT
TCACTATCGTTCTCCCTTTTCTTGTTTAATTGT------TTCTCGATCGAGTCCTTATGA-TTTAGCTGCCGCCTAGGTC
AGTGAGTAGCTGAGTAAGTATGTGCCAGTCGGCAAATGGTAATTGAGATTTGAATATTGGAGTTTCGGGAGCTGAACAAT
TGATCAGTGCTTAGC--TGATGTCTTGCTCATGTCCCAATGTCACATACATACCCTTTGTGGTGACATAATTAACCGCAA
GATTTGAGGTTAATTGGGTATTTAAGATGTTCCATTGCAAGGAACCTCTCCATTTTCTTTTGATTACCATGCATTGCTTT
CTCTCTATGCATAGTTCTTGGCAAACATTTGGACACTGCTACAGTGAGACGCTGTACTGTGTACTAGCACATGCATTTTC
ACTTCAAGTTTGTGTTCCACTAATACTGTGCAAATGGAGACATACGCAGGTGCAAATTAAAAGCTTGCATGAATGGTGCA
TGTACTCCTCTGGTGCACACATACAGTAGCCCAGCGGACGACCTCCTCAACCACATTACCATTAATCGAATCCCTTTCCA
GAGAGAGTACTAGTAATCAGCATGCATGCATTTCTTAATTACATTAGCTGTAATTTAGGT---TTTTTACTTGATAAACT
AGTCAAATTTGAACCTGTAAAATCTGATCTATAATTGGGACCGTATGCCCTGGATTTTGATCCGAGGGTACTGCTTGAAA
GGAGTACTGAACTGAACTCAAGGCAGACCGATCTTCTCTGGTCCCCGGCCGGATGGGACACTGTAGACTCACTGCATGCG
GCCGGGGAGTAATCTTGGCCCATGGCGGCGGCGGCCTCACGTGCGGGCGCGCTACCA----GCCCACTGTTGCTCTCTCT
CCAAAGATCTCGTCCCCCACTCCAT
>chr1D_329
TATACA--------------------------------------------------------------------------
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-------------TACGTTGTTGCAAACATATAGAAATAATTTATCTTTCTTA---AGAAAGAGTTTGATAACTGTTTCA
GGTCTGACAAGTGGAATTTGGAATAGCAAAC-----CATGTTACCAGGGTACTGATCAGTACTAATATA-----------
-TCTCCTCGTCCGGCCCAGCCGACACTCGCCACTGTTGGACACAGCATGACCTCAACGCTGCCACAATCCGACGCACACG
AGCGATGCCGCATCTCGATCGGCCGCT----GGCCGGCCGGCCATGCAACAGCCGGCGCCTC--------AGCCTGAGCC
TCTACTCCGATCCCTACGCGCACATGCACTACG-------ACTGTTCATCC-----ATACGCGCGCACCGTGCGTACGCT
CTGGAGTACG------------TAGCGCGCAGGGAATTGTTCCGGCGACGGCCGGGGGCCACCAACCACGTGAATGCTCC
CCGGCCCCCACACCGCGCTCCCCTCCCCTCCCCTCCCTCCCCAGCTATCACCTTCA-----AGCATCACACCTCCGTCCG
TCCCCTTCACTTCACTAGCACCCAGGTTCGCCTCCCCGCCAACGTCGCTCTCGGCCCATCCGCCCGCC----CCCCGCGC
GCGTCTCCACTACCCCCTCCCTGCCAGATCGCCCGCTCCAGCCGCGCGCGGCGGCCGGCC----GGCGGGCTAACCTCCA
AGCCG---CATGGACTCCCCGGGCACCGCCGGCCCTTCGTCCTCCTCC---GCGGGCGACGCGCAGCAGCCGGTGGCGCT
GGCGGTGGCGCCCCCGCAGCCGC------------CGCCGCCGCA------------------GCAGCAGCTGAGCAGGT
ACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCCTGCAGTACCTGCGCAACCACCGCCCCCCGCTGACGCTGGCGCGG
TGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCGTCCGGCTGCGC
GCACTACGGCCAGCCCAGCCCGCCCGCGCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCTCCCTCGACGCGCTCATCG
GCCGCCTCCGCGCCGCCTACGAGGAGAGCGGCCACGCGCCCGAGTCCAACCCCTTCGCCGCGCGCGCCGTGCGGATCTAC
CTCCGCGAGGTCCGCGACGGCCAGGCCAAGGCCAGGGGCATACCCTACGAGAAGAAGAAGCGCAAGCGCACGCCGGCGCT
CCCTGCCGGCGCTGCCGGGGAGGGGACGAGCTCGTCGTCGGCCGCCGCGGCTGTCCCGGGCCGCGGCGAAGGAGGAGAGC
AAAGTGGCAGCGGCACCGCGGCGGCTTCACCGCTGCCGTCGCCCACCGGCGCCCAGGCGGAAGGGAGTAGCGTCACCGCT
GCAC---CAAGCACCTCTCGAGTATAGTAGAATCGATCACCTCGCCGACAAGAGACCTCCCTCCTTGTCGTATTTGCTTC
CCTACGTACGTGTCGGTAATGTATACATCGTTCGCGCTTAATTTGCAAGGTTTGAGCTATATTTCTCTTGCCATTTGATT
TCACTGTCCTTCTCCCTTTTCTTGTTTAATTTT------TCCTCGATCGAGTCCTTATGATTTTAGCTGCCGCCTAGGTC
AGTGAGTAGCTGAGTAAGTATGTGCCAGTCGGCAAATGGTAATTGAGATTTGAATATTGGAGTTTTGGGAGCTGAACGAT
TGATCAGTGCT-AGC--TGATGTTTTGCTCATGTGCCAATGTCCCATACATACCCTCCGTGGTGACATAATTAACCGCAA
GATTTGAGGTTAATTGGGTATTTAAGATCTTCCATTGCAAGGAACCTCTCCATTTTGTTTTGATTACCATGCATTGTTTT
CTCT------ATAGTTCTTGGCAAACATTTGGACACTGCTACTGTGAGACGCTGTGCTGTGTACTGGCACATGCATTTTC
ACTTCAAGTTTGTGTTCCACATA-ACTGTGCAAATGGAGACATACGCAGGTGCCAATTAAAAGCTTGCATGAATGGTGCA
TGTACTCCTCTGGTGCACACATACAGTAGCCCAGCGTACGACCTCCTCAACCACATTACCATCAATCGAATCCCTTTCCA
GAGAGAGTAGTA---ATCAGCATGCATGCATTTCTTAATTACATTAGCTGTAATTTAGG-TTATTTTTACTTGATAAACT
AGTCAAATTTGAACCTGTAAAATCTGATCTATAATTGGGACCGAATGCCCTGGATTTTGATCCGAGGGTACTGCTTGAAA
GGAGTACTGAACTGAACTCAAGGCAGATCGATCTTCTCTGGTCCCCGGCCGGATGGGACACTGTAGACTCACTGA-----
------------TCTAGGCCCATGGCGGCGGCGACCACACGTGCGGGCGCGCTACC----GGCCCACTGTTGCTCTCTCT
CCAAAGATCTCGTCCCCCACTCCAT
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS----------S---------------S-------------------S---------S---------S
------------------------------SSSSSS-------------S--------------S-SSSSSSSSSSSSSS
S--------------------------------------------------------------------------S----
------S--------------S---------------------------------S------SSSSSSSS----------
---S-------------------------S-----SSSS----------S-SSSSS------------------------
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--------------------------------------------------------SSSSS-------------------
-----S-----------------------S---------------------------S----------------------
---------------------------------S--------------------------SSSS----------------
----SSSS----------------------------------------SSS-----------------------------
----------------------------SSS--------------SSSSSSSSSSSSSSSSSS-----------------
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----------------------S---------------------------------------------------------
--------------------------------------------------------------------------S-----
-------------------------S-------S-------S----S---------------------------------
-----------------S----------------------------------------S---------------S-S---
--S-----------------------------------------------------------------------------
----------------------------------------S---------------------------------------
---------------S----------------SSSSSSS--S--------------------S-----S-----------
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---------------SS--S----------------S--------------------SSS-SSSSS--------------
----------S-------------------S-------------S----------------------------------S
--------S-----------S---------------------------S-------------------------------
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-----------------------------S-S--S----------------------S-S-SSS-S--------------
-----------------S-------S--------------SS-----------S--SS----------------------
-------------------------------------S------------------------------------------
----S-S----------------------------------------------------------S--------------
----------SS--------------------------------------------SSSS--------------------
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>forward_123
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-----------------------GACAGACACCCACTAGCCAC-------------------------------------
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>reverse_1763
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--TCCAAGCACCTCCCGAGTAT----------------------------------------------------------
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>forward_224
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--------------------------------------------CATGATGGCGCCGAATCAAG----------------
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>reverse_2096
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---------------TGTGGTGTTTTGCTCATGTCC--------------------------------------------
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