Multiple sequence alignment - TraesCS1A01G289900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G289900 chr1A 100.000 2201 0 0 1 2201 486815908 486818108 0.000000e+00 4065
1 TraesCS1A01G289900 chr1A 89.922 774 29 18 648 1388 486896513 486897270 0.000000e+00 952
2 TraesCS1A01G289900 chr1A 89.485 447 42 4 1502 1945 486938365 486938809 5.310000e-156 560
3 TraesCS1A01G289900 chr1A 82.171 516 46 14 734 1237 486750624 486751105 3.400000e-108 401
4 TraesCS1A01G289900 chr1A 85.354 198 20 6 1000 1197 486953458 486953646 1.720000e-46 196
5 TraesCS1A01G289900 chr1A 91.096 146 8 5 128 272 486896374 486896515 2.230000e-45 193
6 TraesCS1A01G289900 chr1A 78.947 266 34 15 1951 2199 486944154 486944414 6.290000e-36 161
7 TraesCS1A01G289900 chr1A 90.323 93 7 1 1943 2035 486753796 486753886 1.070000e-23 121
8 TraesCS1A01G289900 chr1A 85.965 114 11 2 1 109 486896209 486896322 1.380000e-22 117
9 TraesCS1A01G289900 chr1A 83.471 121 5 5 1297 1405 486751128 486751245 5.000000e-17 99
10 TraesCS1A01G289900 chr1B 85.612 834 46 26 648 1448 520390264 520391056 0.000000e+00 808
11 TraesCS1A01G289900 chr1B 85.149 505 43 13 739 1239 520374033 520374509 2.540000e-134 488
12 TraesCS1A01G289900 chr1B 81.190 420 51 21 784 1197 520468718 520469115 1.640000e-81 313
13 TraesCS1A01G289900 chr1B 87.413 143 9 1 1315 1448 520401339 520401481 2.930000e-34 156
14 TraesCS1A01G289900 chr1D 84.453 759 58 35 648 1381 387059792 387060515 0.000000e+00 693
15 TraesCS1A01G289900 chr1D 84.211 513 43 14 735 1239 386949558 386950040 4.280000e-127 464
16 TraesCS1A01G289900 chr1D 86.076 237 26 6 961 1197 387193693 387193922 4.690000e-62 248
17 TraesCS1A01G289900 chr1D 81.618 272 30 11 1943 2201 387191078 387191342 7.960000e-50 207
18 TraesCS1A01G289900 chr1D 81.852 270 25 12 1951 2201 387186193 387186457 2.860000e-49 206
19 TraesCS1A01G289900 chr1D 81.959 194 9 13 1275 1448 386950036 386950223 8.190000e-30 141
20 TraesCS1A01G289900 chr5A 94.778 383 17 3 273 654 440968175 440967795 5.230000e-166 593
21 TraesCS1A01G289900 chr5A 91.906 383 29 2 270 651 329848924 329848543 3.220000e-148 534
22 TraesCS1A01G289900 chr7A 94.241 382 20 2 271 651 553236192 553236572 1.130000e-162 582
23 TraesCS1A01G289900 chr6A 92.932 382 25 2 271 651 615694501 615694881 2.470000e-154 555
24 TraesCS1A01G289900 chr6B 91.710 386 29 3 267 651 186787406 186787023 1.160000e-147 532
25 TraesCS1A01G289900 chr6B 92.063 378 28 2 273 649 714811565 714811941 4.160000e-147 531
26 TraesCS1A01G289900 chr6B 81.553 309 47 9 1641 1944 712637796 712638099 1.690000e-61 246
27 TraesCS1A01G289900 chr6B 80.968 310 51 8 1641 1945 42391971 42392277 2.820000e-59 239
28 TraesCS1A01G289900 chr4B 91.885 382 29 2 271 651 628279666 628280046 1.160000e-147 532
29 TraesCS1A01G289900 chr4B 91.623 382 30 2 271 651 628240103 628240483 5.380000e-146 527
30 TraesCS1A01G289900 chr5B 91.799 378 26 5 273 649 596930221 596929848 2.500000e-144 521
31 TraesCS1A01G289900 chr4D 83.013 312 38 10 1640 1945 469178436 469178134 3.600000e-68 268
32 TraesCS1A01G289900 chr4A 79.805 307 55 7 1642 1944 708557225 708557528 1.320000e-52 217
33 TraesCS1A01G289900 chr4A 79.233 313 44 14 1641 1945 555969833 555970132 4.790000e-47 198
34 TraesCS1A01G289900 chr7D 79.070 301 55 8 1648 1944 25048025 25047729 1.330000e-47 200
35 TraesCS1A01G289900 chrUn 79.412 306 44 13 1640 1936 1417212 1417507 4.790000e-47 198
36 TraesCS1A01G289900 chrUn 79.412 306 44 13 1640 1936 298256157 298256452 4.790000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G289900 chr1A 486815908 486818108 2200 False 4065.000000 4065 100.000000 1 2201 1 chr1A.!!$F1 2200
1 TraesCS1A01G289900 chr1A 486896209 486897270 1061 False 420.666667 952 88.994333 1 1388 3 chr1A.!!$F6 1387
2 TraesCS1A01G289900 chr1A 486750624 486753886 3262 False 207.000000 401 85.321667 734 2035 3 chr1A.!!$F5 1301
3 TraesCS1A01G289900 chr1B 520390264 520391056 792 False 808.000000 808 85.612000 648 1448 1 chr1B.!!$F2 800
4 TraesCS1A01G289900 chr1D 387059792 387060515 723 False 693.000000 693 84.453000 648 1381 1 chr1D.!!$F1 733
5 TraesCS1A01G289900 chr1D 386949558 386950223 665 False 302.500000 464 83.085000 735 1448 2 chr1D.!!$F3 713
6 TraesCS1A01G289900 chr1D 387191078 387193922 2844 False 227.500000 248 83.847000 961 2201 2 chr1D.!!$F4 1240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 480 0.032952 AACTAAGCGCGTCTTGGTCA 59.967 50.0 24.01 7.64 44.39 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 3159 0.036306 TCGGGAAGAAAAGGAGGCAC 59.964 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.005450 GGACCAAATAGTCAAGGGGCA 59.995 52.381 0.00 0.00 38.59 5.36
62 63 3.063084 GTCACCCGGTCTCTCGCT 61.063 66.667 0.00 0.00 0.00 4.93
112 118 2.858344 CGAGTCGACTGAACAAACTTGT 59.142 45.455 25.58 0.00 44.72 3.16
138 177 4.082665 AGGTGTAGATGAATCCATGCAG 57.917 45.455 0.00 0.00 32.09 4.41
139 178 3.144506 GGTGTAGATGAATCCATGCAGG 58.855 50.000 0.00 0.00 39.47 4.85
148 187 0.035152 ATCCATGCAGGCTCGTTTCA 60.035 50.000 0.00 0.00 37.29 2.69
149 188 0.674581 TCCATGCAGGCTCGTTTCAG 60.675 55.000 0.00 0.00 37.29 3.02
155 194 0.241213 CAGGCTCGTTTCAGACTCGA 59.759 55.000 0.00 0.00 23.88 4.04
156 195 0.241481 AGGCTCGTTTCAGACTCGAC 59.759 55.000 0.00 0.00 0.00 4.20
158 197 0.110328 GCTCGTTTCAGACTCGACGA 60.110 55.000 0.00 0.00 41.62 4.20
214 253 2.062971 ATTCTGCATGGGCGAGAATT 57.937 45.000 0.00 0.00 41.14 2.17
224 263 0.105039 GGCGAGAATTCGGTCTGGAT 59.895 55.000 0.00 0.00 46.76 3.41
262 301 7.282450 CAGTGATCTTTGGATGATTCATTCAGA 59.718 37.037 7.67 3.13 37.89 3.27
263 302 7.832685 AGTGATCTTTGGATGATTCATTCAGAA 59.167 33.333 7.67 5.42 37.89 3.02
266 305 8.591114 ATCTTTGGATGATTCATTCAGAAGTT 57.409 30.769 18.88 13.17 40.15 2.66
267 306 7.823665 TCTTTGGATGATTCATTCAGAAGTTG 58.176 34.615 18.88 4.20 40.15 3.16
270 309 6.479006 TGGATGATTCATTCAGAAGTTGTCT 58.521 36.000 3.35 0.00 40.15 3.41
272 311 8.102676 TGGATGATTCATTCAGAAGTTGTCTTA 58.897 33.333 3.35 0.00 40.15 2.10
273 312 8.610896 GGATGATTCATTCAGAAGTTGTCTTAG 58.389 37.037 0.00 0.00 40.15 2.18
275 314 6.372659 TGATTCATTCAGAAGTTGTCTTAGGC 59.627 38.462 0.00 0.00 40.15 3.93
276 315 4.579869 TCATTCAGAAGTTGTCTTAGGCC 58.420 43.478 0.00 0.00 32.70 5.19
277 316 4.287067 TCATTCAGAAGTTGTCTTAGGCCT 59.713 41.667 11.78 11.78 32.70 5.19
279 318 4.706842 TCAGAAGTTGTCTTAGGCCTTT 57.293 40.909 12.58 0.00 32.70 3.11
280 319 4.642429 TCAGAAGTTGTCTTAGGCCTTTC 58.358 43.478 12.58 5.93 32.70 2.62
281 320 4.102524 TCAGAAGTTGTCTTAGGCCTTTCA 59.897 41.667 12.58 2.33 32.70 2.69
284 323 5.307196 AGAAGTTGTCTTAGGCCTTTCACTA 59.693 40.000 12.58 0.00 29.66 2.74
286 325 5.491982 AGTTGTCTTAGGCCTTTCACTATG 58.508 41.667 12.58 0.00 0.00 2.23
288 327 6.212791 AGTTGTCTTAGGCCTTTCACTATGTA 59.787 38.462 12.58 0.00 0.00 2.29
289 328 6.614694 TGTCTTAGGCCTTTCACTATGTAA 57.385 37.500 12.58 0.00 0.00 2.41
290 329 6.640518 TGTCTTAGGCCTTTCACTATGTAAG 58.359 40.000 12.58 4.14 0.00 2.34
291 330 5.524281 GTCTTAGGCCTTTCACTATGTAAGC 59.476 44.000 12.58 0.00 0.00 3.09
292 331 3.283259 AGGCCTTTCACTATGTAAGCC 57.717 47.619 0.00 0.00 0.00 4.35
293 332 2.576191 AGGCCTTTCACTATGTAAGCCA 59.424 45.455 0.00 0.00 30.01 4.75
294 333 3.203040 AGGCCTTTCACTATGTAAGCCAT 59.797 43.478 0.00 0.00 37.58 4.40
295 334 4.412199 AGGCCTTTCACTATGTAAGCCATA 59.588 41.667 0.00 0.00 34.86 2.74
296 335 5.104109 AGGCCTTTCACTATGTAAGCCATAA 60.104 40.000 0.00 0.00 35.62 1.90
297 336 5.770162 GGCCTTTCACTATGTAAGCCATAAT 59.230 40.000 0.00 0.00 35.62 1.28
299 338 6.347725 GCCTTTCACTATGTAAGCCATAATCG 60.348 42.308 0.00 0.00 35.62 3.34
300 339 6.147821 CCTTTCACTATGTAAGCCATAATCGG 59.852 42.308 0.00 0.00 35.62 4.18
301 340 5.801531 TCACTATGTAAGCCATAATCGGT 57.198 39.130 0.00 0.00 35.62 4.69
302 341 5.538118 TCACTATGTAAGCCATAATCGGTG 58.462 41.667 0.00 0.00 35.62 4.94
303 342 4.152402 CACTATGTAAGCCATAATCGGTGC 59.848 45.833 0.00 0.00 35.62 5.01
304 343 2.700722 TGTAAGCCATAATCGGTGCA 57.299 45.000 0.00 0.00 0.00 4.57
305 344 2.992593 TGTAAGCCATAATCGGTGCAA 58.007 42.857 0.00 0.00 0.00 4.08
306 345 3.348119 TGTAAGCCATAATCGGTGCAAA 58.652 40.909 0.00 0.00 0.00 3.68
307 346 3.759086 TGTAAGCCATAATCGGTGCAAAA 59.241 39.130 0.00 0.00 0.00 2.44
308 347 4.400884 TGTAAGCCATAATCGGTGCAAAAT 59.599 37.500 0.00 0.00 0.00 1.82
309 348 4.470334 AAGCCATAATCGGTGCAAAATT 57.530 36.364 0.00 0.00 0.00 1.82
310 349 4.470334 AGCCATAATCGGTGCAAAATTT 57.530 36.364 0.00 0.00 0.00 1.82
311 350 4.183101 AGCCATAATCGGTGCAAAATTTG 58.817 39.130 0.57 0.57 0.00 2.32
330 369 9.566530 AAAATTTGCTTTTTGACATTTAACACC 57.433 25.926 0.00 0.00 33.14 4.16
331 370 5.957910 TTGCTTTTTGACATTTAACACCG 57.042 34.783 0.00 0.00 0.00 4.94
332 371 5.250235 TGCTTTTTGACATTTAACACCGA 57.750 34.783 0.00 0.00 0.00 4.69
333 372 5.837437 TGCTTTTTGACATTTAACACCGAT 58.163 33.333 0.00 0.00 0.00 4.18
335 374 5.388371 GCTTTTTGACATTTAACACCGATGC 60.388 40.000 0.00 0.00 0.00 3.91
337 376 2.088423 TGACATTTAACACCGATGCCC 58.912 47.619 0.00 0.00 0.00 5.36
338 377 2.290641 TGACATTTAACACCGATGCCCT 60.291 45.455 0.00 0.00 0.00 5.19
339 378 3.055021 TGACATTTAACACCGATGCCCTA 60.055 43.478 0.00 0.00 0.00 3.53
342 381 3.637911 TTTAACACCGATGCCCTACAT 57.362 42.857 0.00 0.00 43.54 2.29
343 382 3.637911 TTAACACCGATGCCCTACATT 57.362 42.857 0.00 0.00 39.84 2.71
344 383 1.750193 AACACCGATGCCCTACATTG 58.250 50.000 0.00 0.00 39.84 2.82
346 385 1.299541 CACCGATGCCCTACATTGTC 58.700 55.000 0.00 0.00 39.84 3.18
347 386 0.180406 ACCGATGCCCTACATTGTCC 59.820 55.000 0.00 0.00 39.84 4.02
350 389 1.312815 GATGCCCTACATTGTCCAGC 58.687 55.000 0.00 0.00 39.84 4.85
351 390 0.106519 ATGCCCTACATTGTCCAGCC 60.107 55.000 0.00 0.00 34.40 4.85
353 392 1.153168 CCCTACATTGTCCAGCCCG 60.153 63.158 0.00 0.00 0.00 6.13
354 393 1.153168 CCTACATTGTCCAGCCCGG 60.153 63.158 0.00 0.00 0.00 5.73
355 394 1.602237 CTACATTGTCCAGCCCGGT 59.398 57.895 0.00 0.00 35.57 5.28
356 395 0.744414 CTACATTGTCCAGCCCGGTG 60.744 60.000 0.00 0.00 35.57 4.94
357 396 2.813226 TACATTGTCCAGCCCGGTGC 62.813 60.000 0.00 3.33 41.71 5.01
358 397 4.740822 ATTGTCCAGCCCGGTGCC 62.741 66.667 10.82 0.00 42.71 5.01
364 403 2.033448 CAGCCCGGTGCCAAGTAA 59.967 61.111 10.82 0.00 42.71 2.24
366 405 1.151908 AGCCCGGTGCCAAGTAAAA 59.848 52.632 10.82 0.00 42.71 1.52
389 428 8.506168 AAAAATTCTAGGCATCGATGTTTCTA 57.494 30.769 25.47 20.72 0.00 2.10
390 429 7.484035 AAATTCTAGGCATCGATGTTTCTAC 57.516 36.000 25.47 8.44 0.00 2.59
391 430 5.854010 TTCTAGGCATCGATGTTTCTACT 57.146 39.130 25.47 15.69 0.00 2.57
394 433 2.939103 AGGCATCGATGTTTCTACTTGC 59.061 45.455 25.47 9.39 0.00 4.01
395 434 2.939103 GGCATCGATGTTTCTACTTGCT 59.061 45.455 25.47 0.00 0.00 3.91
397 436 4.494855 GGCATCGATGTTTCTACTTGCTTC 60.495 45.833 25.47 4.50 0.00 3.86
398 437 4.780324 GCATCGATGTTTCTACTTGCTTCG 60.780 45.833 25.47 0.00 0.00 3.79
399 438 3.250744 TCGATGTTTCTACTTGCTTCGG 58.749 45.455 0.00 0.00 0.00 4.30
400 439 2.993899 CGATGTTTCTACTTGCTTCGGT 59.006 45.455 0.00 0.00 0.00 4.69
401 440 3.181530 CGATGTTTCTACTTGCTTCGGTG 60.182 47.826 0.00 0.00 0.00 4.94
402 441 1.871039 TGTTTCTACTTGCTTCGGTGC 59.129 47.619 0.00 0.00 0.00 5.01
403 442 1.197036 GTTTCTACTTGCTTCGGTGCC 59.803 52.381 0.00 0.00 0.00 5.01
404 443 0.394938 TTCTACTTGCTTCGGTGCCA 59.605 50.000 0.00 0.00 0.00 4.92
405 444 0.394938 TCTACTTGCTTCGGTGCCAA 59.605 50.000 0.00 0.00 0.00 4.52
406 445 1.202710 TCTACTTGCTTCGGTGCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
408 447 1.039856 ACTTGCTTCGGTGCCAAATT 58.960 45.000 0.00 0.00 0.00 1.82
409 448 1.000274 ACTTGCTTCGGTGCCAAATTC 60.000 47.619 0.00 0.00 0.00 2.17
410 449 0.039617 TTGCTTCGGTGCCAAATTCG 60.040 50.000 0.00 0.00 0.00 3.34
412 451 1.862602 GCTTCGGTGCCAAATTCGGT 61.863 55.000 0.00 0.00 0.00 4.69
414 453 0.535328 TTCGGTGCCAAATTCGGTGA 60.535 50.000 0.00 0.00 0.00 4.02
417 456 1.212751 GTGCCAAATTCGGTGAGCC 59.787 57.895 0.00 0.00 0.00 4.70
418 457 1.228398 TGCCAAATTCGGTGAGCCA 60.228 52.632 0.00 0.00 34.09 4.75
419 458 0.825425 TGCCAAATTCGGTGAGCCAA 60.825 50.000 0.00 0.00 34.09 4.52
421 460 1.748493 GCCAAATTCGGTGAGCCAATA 59.252 47.619 0.00 0.00 34.09 1.90
422 461 2.165437 GCCAAATTCGGTGAGCCAATAA 59.835 45.455 0.00 0.00 34.09 1.40
423 462 3.367910 GCCAAATTCGGTGAGCCAATAAA 60.368 43.478 0.00 0.00 34.09 1.40
424 463 4.173256 CCAAATTCGGTGAGCCAATAAAC 58.827 43.478 0.00 0.00 34.09 2.01
425 464 4.082245 CCAAATTCGGTGAGCCAATAAACT 60.082 41.667 0.00 0.00 34.09 2.66
426 465 5.124776 CCAAATTCGGTGAGCCAATAAACTA 59.875 40.000 0.00 0.00 34.09 2.24
427 466 6.349777 CCAAATTCGGTGAGCCAATAAACTAA 60.350 38.462 0.00 0.00 34.09 2.24
428 467 6.436843 AATTCGGTGAGCCAATAAACTAAG 57.563 37.500 0.00 0.00 34.09 2.18
430 469 2.030457 CGGTGAGCCAATAAACTAAGCG 59.970 50.000 0.00 0.00 32.43 4.68
432 471 1.663643 TGAGCCAATAAACTAAGCGCG 59.336 47.619 0.00 0.00 0.00 6.86
433 472 1.664151 GAGCCAATAAACTAAGCGCGT 59.336 47.619 8.43 0.00 0.00 6.01
434 473 1.664151 AGCCAATAAACTAAGCGCGTC 59.336 47.619 8.43 0.00 0.00 5.19
436 475 2.095372 GCCAATAAACTAAGCGCGTCTT 59.905 45.455 17.45 17.45 38.79 3.01
437 476 3.670203 CCAATAAACTAAGCGCGTCTTG 58.330 45.455 20.90 14.53 36.25 3.02
440 479 1.145803 AAACTAAGCGCGTCTTGGTC 58.854 50.000 24.01 1.67 44.39 4.02
441 480 0.032952 AACTAAGCGCGTCTTGGTCA 59.967 50.000 24.01 7.64 44.39 4.02
442 481 0.246635 ACTAAGCGCGTCTTGGTCAT 59.753 50.000 20.37 5.02 41.91 3.06
443 482 1.337823 ACTAAGCGCGTCTTGGTCATT 60.338 47.619 20.37 4.74 41.91 2.57
448 487 1.428448 CGCGTCTTGGTCATTTCTCA 58.572 50.000 0.00 0.00 0.00 3.27
450 489 2.222886 CGCGTCTTGGTCATTTCTCATG 60.223 50.000 0.00 0.00 0.00 3.07
451 490 2.476854 GCGTCTTGGTCATTTCTCATGC 60.477 50.000 0.00 0.00 0.00 4.06
452 491 2.222886 CGTCTTGGTCATTTCTCATGCG 60.223 50.000 0.00 0.00 0.00 4.73
453 492 3.002791 GTCTTGGTCATTTCTCATGCGA 58.997 45.455 0.00 0.00 0.00 5.10
454 493 3.436704 GTCTTGGTCATTTCTCATGCGAA 59.563 43.478 0.00 0.00 0.00 4.70
455 494 3.686241 TCTTGGTCATTTCTCATGCGAAG 59.314 43.478 0.00 0.00 0.00 3.79
469 508 2.627791 CGAAGCAACACCCATGACA 58.372 52.632 0.00 0.00 0.00 3.58
470 509 0.238289 CGAAGCAACACCCATGACAC 59.762 55.000 0.00 0.00 0.00 3.67
471 510 1.609208 GAAGCAACACCCATGACACT 58.391 50.000 0.00 0.00 0.00 3.55
473 512 0.538057 AGCAACACCCATGACACTGG 60.538 55.000 0.00 0.00 35.95 4.00
475 514 1.238439 CAACACCCATGACACTGGTC 58.762 55.000 0.00 0.00 44.57 4.02
476 515 0.110486 AACACCCATGACACTGGTCC 59.890 55.000 0.00 0.00 43.65 4.46
478 517 0.401738 CACCCATGACACTGGTCCTT 59.598 55.000 0.00 0.00 43.65 3.36
479 518 1.628340 CACCCATGACACTGGTCCTTA 59.372 52.381 0.00 0.00 43.65 2.69
480 519 1.909302 ACCCATGACACTGGTCCTTAG 59.091 52.381 0.00 0.00 43.65 2.18
481 520 1.210478 CCCATGACACTGGTCCTTAGG 59.790 57.143 0.00 0.00 43.65 2.69
482 521 1.909302 CCATGACACTGGTCCTTAGGT 59.091 52.381 0.00 0.00 43.65 3.08
483 522 3.104512 CCATGACACTGGTCCTTAGGTA 58.895 50.000 0.00 0.00 43.65 3.08
484 523 3.517901 CCATGACACTGGTCCTTAGGTAA 59.482 47.826 0.00 0.00 43.65 2.85
485 524 4.383118 CCATGACACTGGTCCTTAGGTAAG 60.383 50.000 0.00 0.00 43.65 2.34
486 525 3.853207 TGACACTGGTCCTTAGGTAAGT 58.147 45.455 0.00 0.00 43.65 2.24
487 526 4.228824 TGACACTGGTCCTTAGGTAAGTT 58.771 43.478 0.00 0.00 43.65 2.66
488 527 4.039973 TGACACTGGTCCTTAGGTAAGTTG 59.960 45.833 0.00 0.00 43.65 3.16
489 528 3.326880 ACACTGGTCCTTAGGTAAGTTGG 59.673 47.826 0.00 0.00 0.00 3.77
490 529 2.910977 ACTGGTCCTTAGGTAAGTTGGG 59.089 50.000 0.00 0.00 0.00 4.12
491 530 2.910977 CTGGTCCTTAGGTAAGTTGGGT 59.089 50.000 0.00 0.00 0.00 4.51
493 532 4.098894 TGGTCCTTAGGTAAGTTGGGTAG 58.901 47.826 0.00 0.00 0.00 3.18
495 534 4.967442 GGTCCTTAGGTAAGTTGGGTAGAT 59.033 45.833 0.00 0.00 0.00 1.98
496 535 6.138967 GGTCCTTAGGTAAGTTGGGTAGATA 58.861 44.000 0.00 0.00 0.00 1.98
497 536 6.786461 GGTCCTTAGGTAAGTTGGGTAGATAT 59.214 42.308 0.00 0.00 0.00 1.63
498 537 7.952368 GGTCCTTAGGTAAGTTGGGTAGATATA 59.048 40.741 0.00 0.00 0.00 0.86
499 538 9.544579 GTCCTTAGGTAAGTTGGGTAGATATAT 57.455 37.037 0.00 0.00 0.00 0.86
523 562 5.649782 ACTAATTTATATGCATGCAGGCC 57.350 39.130 26.69 3.16 0.00 5.19
524 563 3.967332 AATTTATATGCATGCAGGCCC 57.033 42.857 26.69 0.00 0.00 5.80
525 564 1.246649 TTTATATGCATGCAGGCCCG 58.753 50.000 26.69 0.00 0.00 6.13
526 565 0.110295 TTATATGCATGCAGGCCCGT 59.890 50.000 26.69 10.57 0.00 5.28
539 578 2.124983 CCCGTGCTGGAGTGGATG 60.125 66.667 0.00 0.00 42.00 3.51
540 579 2.821366 CCGTGCTGGAGTGGATGC 60.821 66.667 0.00 0.00 42.00 3.91
541 580 3.190849 CGTGCTGGAGTGGATGCG 61.191 66.667 0.00 0.00 0.00 4.73
543 582 1.375908 GTGCTGGAGTGGATGCGAA 60.376 57.895 0.00 0.00 0.00 4.70
544 583 0.955428 GTGCTGGAGTGGATGCGAAA 60.955 55.000 0.00 0.00 0.00 3.46
546 585 0.659957 GCTGGAGTGGATGCGAAATC 59.340 55.000 0.00 0.00 0.00 2.17
547 586 1.745141 GCTGGAGTGGATGCGAAATCT 60.745 52.381 0.00 0.00 0.00 2.40
548 587 2.636830 CTGGAGTGGATGCGAAATCTT 58.363 47.619 0.00 0.00 0.00 2.40
550 589 3.009723 TGGAGTGGATGCGAAATCTTTC 58.990 45.455 0.00 0.00 0.00 2.62
551 590 3.009723 GGAGTGGATGCGAAATCTTTCA 58.990 45.455 3.77 0.00 37.01 2.69
552 591 3.181506 GGAGTGGATGCGAAATCTTTCAC 60.182 47.826 3.77 0.00 37.01 3.18
553 592 3.411446 AGTGGATGCGAAATCTTTCACA 58.589 40.909 3.77 0.23 37.01 3.58
554 593 3.820467 AGTGGATGCGAAATCTTTCACAA 59.180 39.130 3.77 0.00 37.01 3.33
555 594 4.460382 AGTGGATGCGAAATCTTTCACAAT 59.540 37.500 3.77 0.00 37.01 2.71
556 595 4.560035 GTGGATGCGAAATCTTTCACAATG 59.440 41.667 3.77 0.00 37.01 2.82
557 596 3.549070 GGATGCGAAATCTTTCACAATGC 59.451 43.478 3.77 0.00 37.01 3.56
559 598 2.031245 TGCGAAATCTTTCACAATGCGT 60.031 40.909 3.77 0.00 37.01 5.24
568 607 2.110213 ACAATGCGTGACCGGTGT 59.890 55.556 14.63 0.00 33.68 4.16
569 608 1.959226 ACAATGCGTGACCGGTGTC 60.959 57.895 14.63 3.21 42.12 3.67
595 634 3.837213 AAATTCAACTGCCATCTGACG 57.163 42.857 0.00 0.00 0.00 4.35
596 635 2.479566 ATTCAACTGCCATCTGACGT 57.520 45.000 0.00 0.00 0.00 4.34
597 636 3.610040 ATTCAACTGCCATCTGACGTA 57.390 42.857 0.00 0.00 0.00 3.57
598 637 3.610040 TTCAACTGCCATCTGACGTAT 57.390 42.857 0.00 0.00 0.00 3.06
599 638 4.729227 TTCAACTGCCATCTGACGTATA 57.271 40.909 0.00 0.00 0.00 1.47
600 639 4.041740 TCAACTGCCATCTGACGTATAC 57.958 45.455 0.00 0.00 0.00 1.47
601 640 2.776312 ACTGCCATCTGACGTATACG 57.224 50.000 23.24 23.24 46.33 3.06
635 674 2.264005 AAAATGTGGCACCGAGTACA 57.736 45.000 16.26 0.00 0.00 2.90
636 675 2.489938 AAATGTGGCACCGAGTACAT 57.510 45.000 16.26 0.00 35.43 2.29
637 676 3.620427 AAATGTGGCACCGAGTACATA 57.380 42.857 16.26 0.00 33.70 2.29
638 677 2.890808 ATGTGGCACCGAGTACATAG 57.109 50.000 16.26 0.00 32.41 2.23
639 678 1.552578 TGTGGCACCGAGTACATAGT 58.447 50.000 16.26 0.00 0.00 2.12
640 679 1.203758 TGTGGCACCGAGTACATAGTG 59.796 52.381 16.26 0.01 0.00 2.74
641 680 0.821517 TGGCACCGAGTACATAGTGG 59.178 55.000 10.11 0.65 0.00 4.00
642 681 1.108776 GGCACCGAGTACATAGTGGA 58.891 55.000 10.11 0.00 0.00 4.02
643 682 1.479323 GGCACCGAGTACATAGTGGAA 59.521 52.381 10.11 0.00 0.00 3.53
644 683 2.481449 GGCACCGAGTACATAGTGGAAG 60.481 54.545 10.11 0.00 0.00 3.46
645 684 2.481449 GCACCGAGTACATAGTGGAAGG 60.481 54.545 10.11 0.00 0.00 3.46
646 685 1.755380 ACCGAGTACATAGTGGAAGGC 59.245 52.381 0.00 0.00 0.00 4.35
647 686 1.068741 CCGAGTACATAGTGGAAGGCC 59.931 57.143 0.00 0.00 0.00 5.19
648 687 2.032620 CGAGTACATAGTGGAAGGCCT 58.967 52.381 0.00 0.00 34.31 5.19
649 688 2.431057 CGAGTACATAGTGGAAGGCCTT 59.569 50.000 20.65 20.65 34.31 4.35
650 689 3.635373 CGAGTACATAGTGGAAGGCCTTA 59.365 47.826 20.54 1.80 34.31 2.69
651 690 4.098960 CGAGTACATAGTGGAAGGCCTTAA 59.901 45.833 20.54 7.18 34.31 1.85
740 786 1.519455 CGTGTGGCTACTGGCTAGC 60.519 63.158 6.04 6.04 46.60 3.42
782 828 3.434319 GCCACATCACAGCCCACG 61.434 66.667 0.00 0.00 0.00 4.94
927 991 5.240623 ACACACACTCACACAAAAGAAGAAA 59.759 36.000 0.00 0.00 0.00 2.52
956 1020 9.196552 GAAGAAGAAGAAGAAGAAGAAGAAGAG 57.803 37.037 0.00 0.00 0.00 2.85
1011 2705 1.521010 CAGAGCCATGGAGCACTCG 60.521 63.158 18.40 5.39 30.76 4.18
1198 2913 3.497879 GCTTCGGCGCCTACAATT 58.502 55.556 26.68 0.00 0.00 2.32
1199 2914 2.685364 GCTTCGGCGCCTACAATTA 58.315 52.632 26.68 0.00 0.00 1.40
1200 2915 1.011333 GCTTCGGCGCCTACAATTAA 58.989 50.000 26.68 6.09 0.00 1.40
1226 2944 1.996292 CTCTCAAAGACGCCATCGAA 58.004 50.000 0.00 0.00 39.41 3.71
1261 2979 4.124351 CGCACGGACGCTCCCTTA 62.124 66.667 0.00 0.00 31.13 2.69
1265 2989 0.037605 CACGGACGCTCCCTTACTTT 60.038 55.000 0.00 0.00 31.13 2.66
1269 2993 2.361438 CGGACGCTCCCTTACTTTAGAT 59.639 50.000 0.00 0.00 31.13 1.98
1273 2997 3.132467 ACGCTCCCTTACTTTAGATCCAC 59.868 47.826 0.00 0.00 0.00 4.02
1287 3011 7.554476 ACTTTAGATCCACCAGATTAGCTTTTC 59.446 37.037 0.00 0.00 34.42 2.29
1292 3016 6.121776 TCCACCAGATTAGCTTTTCACTTA 57.878 37.500 0.00 0.00 0.00 2.24
1293 3017 6.173339 TCCACCAGATTAGCTTTTCACTTAG 58.827 40.000 0.00 0.00 0.00 2.18
1294 3018 5.163713 CCACCAGATTAGCTTTTCACTTAGC 60.164 44.000 0.00 0.00 37.66 3.09
1295 3019 5.412594 CACCAGATTAGCTTTTCACTTAGCA 59.587 40.000 0.00 0.00 39.85 3.49
1393 3145 2.728690 ATTTCGTGTGCGGTGTACTA 57.271 45.000 0.00 0.00 38.89 1.82
1394 3146 2.054687 TTTCGTGTGCGGTGTACTAG 57.945 50.000 0.00 0.00 38.89 2.57
1395 3147 0.387622 TTCGTGTGCGGTGTACTAGC 60.388 55.000 0.00 0.00 38.89 3.42
1407 3159 3.684788 GGTGTACTAGCATCACTTTGTGG 59.315 47.826 10.73 0.00 33.87 4.17
1414 3166 0.883833 CATCACTTTGTGGTGCCTCC 59.116 55.000 0.00 0.00 37.85 4.30
1423 3184 1.248486 GTGGTGCCTCCTTTTCTTCC 58.752 55.000 0.00 0.00 37.07 3.46
1424 3185 0.112412 TGGTGCCTCCTTTTCTTCCC 59.888 55.000 0.00 0.00 37.07 3.97
1434 3195 2.351726 CCTTTTCTTCCCGAACGCTATG 59.648 50.000 0.00 0.00 0.00 2.23
1448 3209 1.016627 GCTATGATTTGGCTGTGCGA 58.983 50.000 0.00 0.00 0.00 5.10
1449 3210 1.268234 GCTATGATTTGGCTGTGCGAC 60.268 52.381 0.00 0.00 0.00 5.19
1450 3211 2.283298 CTATGATTTGGCTGTGCGACT 58.717 47.619 0.00 0.00 0.00 4.18
1451 3212 0.806868 ATGATTTGGCTGTGCGACTG 59.193 50.000 0.00 0.00 0.00 3.51
1452 3213 1.236616 TGATTTGGCTGTGCGACTGG 61.237 55.000 0.00 0.00 0.00 4.00
1453 3214 1.228245 ATTTGGCTGTGCGACTGGT 60.228 52.632 0.00 0.00 0.00 4.00
1454 3215 0.823356 ATTTGGCTGTGCGACTGGTT 60.823 50.000 0.00 0.00 0.00 3.67
1455 3216 1.034838 TTTGGCTGTGCGACTGGTTT 61.035 50.000 0.00 0.00 0.00 3.27
1456 3217 1.444119 TTGGCTGTGCGACTGGTTTC 61.444 55.000 0.00 0.00 0.00 2.78
1457 3218 1.891919 GGCTGTGCGACTGGTTTCA 60.892 57.895 0.00 0.00 0.00 2.69
1458 3219 1.444119 GGCTGTGCGACTGGTTTCAA 61.444 55.000 0.00 0.00 0.00 2.69
1459 3220 0.380378 GCTGTGCGACTGGTTTCAAA 59.620 50.000 0.00 0.00 0.00 2.69
1460 3221 1.202245 GCTGTGCGACTGGTTTCAAAA 60.202 47.619 0.00 0.00 0.00 2.44
1461 3222 2.733858 GCTGTGCGACTGGTTTCAAAAA 60.734 45.455 0.00 0.00 0.00 1.94
1499 3260 0.104487 TAGAACGCACGGGTGAACAA 59.896 50.000 4.58 0.00 0.00 2.83
1504 3265 0.179235 CGCACGGGTGAACAAATACG 60.179 55.000 2.38 0.00 0.00 3.06
1519 3280 4.941873 ACAAATACGGACTGAAGGGAATTC 59.058 41.667 0.00 0.00 38.50 2.17
1520 3281 4.837093 AATACGGACTGAAGGGAATTCA 57.163 40.909 7.93 0.00 45.79 2.57
1534 3295 0.964358 AATTCAGAGGCTGGCAGTGC 60.964 55.000 17.16 6.55 31.51 4.40
1559 3355 6.422776 AGAAAATACGCGAAAGATCAATGT 57.577 33.333 15.93 0.00 0.00 2.71
1596 3392 5.505985 CGAGGACGTTTATCCCTTCTTAGAG 60.506 48.000 0.00 0.00 39.91 2.43
1617 3413 2.440501 GTGTTGTTGTGCAAGAAGTCG 58.559 47.619 0.00 0.00 37.83 4.18
1646 3443 2.418628 CGCTGGTGTTAATTTGGACGAT 59.581 45.455 0.00 0.00 0.00 3.73
1653 3450 6.207614 TGGTGTTAATTTGGACGATGATTTGA 59.792 34.615 0.00 0.00 0.00 2.69
1656 3453 4.376340 AATTTGGACGATGATTTGAGGC 57.624 40.909 0.00 0.00 0.00 4.70
1657 3454 2.488204 TTGGACGATGATTTGAGGCA 57.512 45.000 0.00 0.00 0.00 4.75
1659 3456 0.652592 GGACGATGATTTGAGGCACG 59.347 55.000 0.00 0.00 0.00 5.34
1661 3458 0.673333 ACGATGATTTGAGGCACGCA 60.673 50.000 0.00 0.00 35.48 5.24
1664 3461 0.955428 ATGATTTGAGGCACGCACGT 60.955 50.000 0.00 0.00 38.28 4.49
1683 3480 3.402681 CGGGGGCACTCAGGTCAT 61.403 66.667 0.00 0.00 0.00 3.06
1690 3487 0.607489 GCACTCAGGTCATTGGTGCT 60.607 55.000 8.79 0.00 46.39 4.40
1691 3488 1.339055 GCACTCAGGTCATTGGTGCTA 60.339 52.381 8.79 0.00 46.39 3.49
1693 3490 1.065854 ACTCAGGTCATTGGTGCTAGC 60.066 52.381 8.10 8.10 0.00 3.42
1699 3496 4.458989 CAGGTCATTGGTGCTAGCTTTTTA 59.541 41.667 17.23 0.00 0.00 1.52
1707 3504 4.283212 TGGTGCTAGCTTTTTATTTTGGCT 59.717 37.500 17.23 0.00 37.08 4.75
1711 3508 4.562789 GCTAGCTTTTTATTTTGGCTTCCG 59.437 41.667 7.70 0.00 34.88 4.30
1716 3513 7.382898 AGCTTTTTATTTTGGCTTCCGATTTA 58.617 30.769 0.00 0.00 0.00 1.40
1724 3521 4.759516 TGGCTTCCGATTTACAAAGTTC 57.240 40.909 0.00 0.00 0.00 3.01
1725 3522 4.394729 TGGCTTCCGATTTACAAAGTTCT 58.605 39.130 0.00 0.00 0.00 3.01
1726 3523 5.553123 TGGCTTCCGATTTACAAAGTTCTA 58.447 37.500 0.00 0.00 0.00 2.10
1727 3524 6.177610 TGGCTTCCGATTTACAAAGTTCTAT 58.822 36.000 0.00 0.00 0.00 1.98
1728 3525 6.657541 TGGCTTCCGATTTACAAAGTTCTATT 59.342 34.615 0.00 0.00 0.00 1.73
1729 3526 7.175990 TGGCTTCCGATTTACAAAGTTCTATTT 59.824 33.333 0.00 0.00 0.00 1.40
1730 3527 7.696872 GGCTTCCGATTTACAAAGTTCTATTTC 59.303 37.037 0.00 0.00 0.00 2.17
1731 3528 8.234546 GCTTCCGATTTACAAAGTTCTATTTCA 58.765 33.333 0.00 0.00 0.00 2.69
1785 3583 6.169800 TCATATTCATGTTTCTCGTGACCAA 58.830 36.000 0.00 0.00 41.16 3.67
1888 3688 4.061570 CGAGTGACGGGTAAAAATCAAC 57.938 45.455 0.00 0.00 38.46 3.18
1890 3690 4.925054 CGAGTGACGGGTAAAAATCAACTA 59.075 41.667 0.00 0.00 38.46 2.24
1904 3704 7.692908 AAAATCAACTATTTTTGTGTCCACG 57.307 32.000 0.00 0.00 43.75 4.94
1907 3707 5.120399 TCAACTATTTTTGTGTCCACGACT 58.880 37.500 0.00 0.00 33.15 4.18
1908 3708 5.007234 TCAACTATTTTTGTGTCCACGACTG 59.993 40.000 0.00 0.00 33.15 3.51
1912 3712 1.934589 TTTGTGTCCACGACTGACAG 58.065 50.000 0.00 0.00 42.99 3.51
1914 3714 1.107945 TGTGTCCACGACTGACAGAA 58.892 50.000 10.08 0.00 42.99 3.02
1915 3715 1.478916 TGTGTCCACGACTGACAGAAA 59.521 47.619 10.08 0.00 42.99 2.52
1916 3716 2.093921 TGTGTCCACGACTGACAGAAAA 60.094 45.455 10.08 0.00 42.99 2.29
1917 3717 2.933906 GTGTCCACGACTGACAGAAAAA 59.066 45.455 10.08 0.00 42.99 1.94
1958 5776 6.650807 TCTTTGAAACTTATGCTAGGTGTCAG 59.349 38.462 0.00 0.00 34.10 3.51
1973 5791 0.976641 GTCAGGTGGAGTGTGGATCA 59.023 55.000 0.00 0.00 0.00 2.92
2010 5828 3.004106 GCAGGGAATTTATGCTAGCTGTG 59.996 47.826 17.23 0.00 37.00 3.66
2014 5832 5.951747 AGGGAATTTATGCTAGCTGTGAAAA 59.048 36.000 17.23 9.21 0.00 2.29
2022 5840 5.173774 TGCTAGCTGTGAAAAAGAAACAG 57.826 39.130 17.23 0.00 43.37 3.16
2026 5844 4.273318 AGCTGTGAAAAAGAAACAGAGGT 58.727 39.130 6.24 0.00 43.22 3.85
2029 5847 5.278022 GCTGTGAAAAAGAAACAGAGGTAGG 60.278 44.000 6.24 0.00 43.22 3.18
2035 5853 1.203313 AGAAACAGAGGTAGGCCCTGA 60.203 52.381 12.31 0.00 46.51 3.86
2036 5854 1.628846 GAAACAGAGGTAGGCCCTGAA 59.371 52.381 12.31 0.00 46.51 3.02
2037 5855 1.972588 AACAGAGGTAGGCCCTGAAT 58.027 50.000 12.31 0.00 46.51 2.57
2038 5856 1.972588 ACAGAGGTAGGCCCTGAATT 58.027 50.000 12.31 0.00 46.51 2.17
2039 5857 2.279173 ACAGAGGTAGGCCCTGAATTT 58.721 47.619 12.31 0.00 46.51 1.82
2040 5858 3.460825 ACAGAGGTAGGCCCTGAATTTA 58.539 45.455 12.31 0.00 46.51 1.40
2041 5859 4.047883 ACAGAGGTAGGCCCTGAATTTAT 58.952 43.478 12.31 0.00 46.51 1.40
2042 5860 5.224441 ACAGAGGTAGGCCCTGAATTTATA 58.776 41.667 12.31 0.00 46.51 0.98
2043 5861 5.852250 ACAGAGGTAGGCCCTGAATTTATAT 59.148 40.000 12.31 0.00 46.51 0.86
2044 5862 7.023120 ACAGAGGTAGGCCCTGAATTTATATA 58.977 38.462 12.31 0.00 46.51 0.86
2045 5863 7.684619 ACAGAGGTAGGCCCTGAATTTATATAT 59.315 37.037 12.31 0.00 46.51 0.86
2046 5864 7.989741 CAGAGGTAGGCCCTGAATTTATATATG 59.010 40.741 0.00 0.00 46.51 1.78
2047 5865 7.684619 AGAGGTAGGCCCTGAATTTATATATGT 59.315 37.037 0.00 0.00 46.51 2.29
2048 5866 8.232098 AGGTAGGCCCTGAATTTATATATGTT 57.768 34.615 0.00 0.00 44.08 2.71
2049 5867 8.678798 AGGTAGGCCCTGAATTTATATATGTTT 58.321 33.333 0.00 0.00 44.08 2.83
2050 5868 8.739972 GGTAGGCCCTGAATTTATATATGTTTG 58.260 37.037 0.00 0.00 0.00 2.93
2051 5869 7.232118 AGGCCCTGAATTTATATATGTTTGC 57.768 36.000 0.00 0.00 0.00 3.68
2052 5870 7.012607 AGGCCCTGAATTTATATATGTTTGCT 58.987 34.615 0.00 0.00 0.00 3.91
2053 5871 8.170061 AGGCCCTGAATTTATATATGTTTGCTA 58.830 33.333 0.00 0.00 0.00 3.49
2054 5872 8.244113 GGCCCTGAATTTATATATGTTTGCTAC 58.756 37.037 0.00 0.00 0.00 3.58
2055 5873 8.244113 GCCCTGAATTTATATATGTTTGCTACC 58.756 37.037 0.00 0.00 0.00 3.18
2056 5874 9.295825 CCCTGAATTTATATATGTTTGCTACCA 57.704 33.333 0.00 0.00 0.00 3.25
2067 5885 8.991783 ATATGTTTGCTACCACTACTAGTAGA 57.008 34.615 31.93 12.06 38.60 2.59
2068 5886 7.713734 ATGTTTGCTACCACTACTAGTAGAA 57.286 36.000 31.93 13.92 38.60 2.10
2069 5887 7.154435 TGTTTGCTACCACTACTAGTAGAAG 57.846 40.000 31.93 23.64 38.60 2.85
2070 5888 6.718454 TGTTTGCTACCACTACTAGTAGAAGT 59.282 38.462 31.93 27.01 38.60 3.01
2071 5889 6.754702 TTGCTACCACTACTAGTAGAAGTG 57.245 41.667 31.93 22.98 38.60 3.16
2072 5890 5.813383 TGCTACCACTACTAGTAGAAGTGT 58.187 41.667 31.93 22.79 39.17 3.55
2073 5891 6.950842 TGCTACCACTACTAGTAGAAGTGTA 58.049 40.000 31.93 22.71 39.17 2.90
2074 5892 7.397221 TGCTACCACTACTAGTAGAAGTGTAA 58.603 38.462 31.93 13.84 39.17 2.41
2075 5893 7.884877 TGCTACCACTACTAGTAGAAGTGTAAA 59.115 37.037 31.93 14.08 39.17 2.01
2076 5894 8.901793 GCTACCACTACTAGTAGAAGTGTAAAT 58.098 37.037 31.93 12.62 39.17 1.40
2079 5897 8.529476 ACCACTACTAGTAGAAGTGTAAATTGG 58.471 37.037 31.93 24.84 39.17 3.16
2080 5898 8.746530 CCACTACTAGTAGAAGTGTAAATTGGA 58.253 37.037 31.93 0.00 39.17 3.53
2081 5899 9.570488 CACTACTAGTAGAAGTGTAAATTGGAC 57.430 37.037 31.93 0.00 36.66 4.02
2082 5900 8.457261 ACTACTAGTAGAAGTGTAAATTGGACG 58.543 37.037 31.93 4.51 36.97 4.79
2083 5901 7.224522 ACTAGTAGAAGTGTAAATTGGACGT 57.775 36.000 3.59 0.00 0.00 4.34
2084 5902 7.088905 ACTAGTAGAAGTGTAAATTGGACGTG 58.911 38.462 3.59 0.00 0.00 4.49
2085 5903 5.850614 AGTAGAAGTGTAAATTGGACGTGT 58.149 37.500 0.00 0.00 0.00 4.49
2086 5904 5.694910 AGTAGAAGTGTAAATTGGACGTGTG 59.305 40.000 0.00 0.00 0.00 3.82
2087 5905 4.699637 AGAAGTGTAAATTGGACGTGTGA 58.300 39.130 0.00 0.00 0.00 3.58
2088 5906 5.120399 AGAAGTGTAAATTGGACGTGTGAA 58.880 37.500 0.00 0.00 0.00 3.18
2089 5907 5.763204 AGAAGTGTAAATTGGACGTGTGAAT 59.237 36.000 0.00 0.00 0.00 2.57
2090 5908 5.607119 AGTGTAAATTGGACGTGTGAATC 57.393 39.130 0.00 0.00 0.00 2.52
2091 5909 5.060506 AGTGTAAATTGGACGTGTGAATCA 58.939 37.500 0.00 0.00 0.00 2.57
2092 5910 5.179368 AGTGTAAATTGGACGTGTGAATCAG 59.821 40.000 0.00 0.00 0.00 2.90
2093 5911 4.454161 TGTAAATTGGACGTGTGAATCAGG 59.546 41.667 0.00 0.00 37.85 3.86
2094 5912 1.453155 ATTGGACGTGTGAATCAGGC 58.547 50.000 0.00 0.00 35.61 4.85
2095 5913 0.107643 TTGGACGTGTGAATCAGGCA 59.892 50.000 0.00 0.00 35.61 4.75
2096 5914 0.107643 TGGACGTGTGAATCAGGCAA 59.892 50.000 0.00 0.00 35.61 4.52
2097 5915 0.798776 GGACGTGTGAATCAGGCAAG 59.201 55.000 0.00 0.00 35.61 4.01
2098 5916 1.608025 GGACGTGTGAATCAGGCAAGA 60.608 52.381 0.00 0.00 35.61 3.02
2099 5917 1.728971 GACGTGTGAATCAGGCAAGAG 59.271 52.381 0.00 0.00 35.61 2.85
2100 5918 1.070758 ACGTGTGAATCAGGCAAGAGT 59.929 47.619 0.00 0.00 35.61 3.24
2101 5919 1.462283 CGTGTGAATCAGGCAAGAGTG 59.538 52.381 0.00 0.00 0.00 3.51
2102 5920 2.498167 GTGTGAATCAGGCAAGAGTGT 58.502 47.619 0.00 0.00 0.00 3.55
2103 5921 2.225019 GTGTGAATCAGGCAAGAGTGTG 59.775 50.000 0.00 0.00 0.00 3.82
2104 5922 2.104622 TGTGAATCAGGCAAGAGTGTGA 59.895 45.455 0.00 0.00 0.00 3.58
2105 5923 2.740981 GTGAATCAGGCAAGAGTGTGAG 59.259 50.000 0.00 0.00 0.00 3.51
2106 5924 2.369860 TGAATCAGGCAAGAGTGTGAGT 59.630 45.455 0.00 0.00 0.00 3.41
2107 5925 3.578282 TGAATCAGGCAAGAGTGTGAGTA 59.422 43.478 0.00 0.00 0.00 2.59
2108 5926 4.223700 TGAATCAGGCAAGAGTGTGAGTAT 59.776 41.667 0.00 0.00 0.00 2.12
2109 5927 3.876274 TCAGGCAAGAGTGTGAGTATC 57.124 47.619 0.00 0.00 0.00 2.24
2110 5928 3.435275 TCAGGCAAGAGTGTGAGTATCT 58.565 45.455 0.00 0.00 34.92 1.98
2111 5929 3.445450 TCAGGCAAGAGTGTGAGTATCTC 59.555 47.826 0.00 0.00 34.92 2.75
2112 5930 3.446873 CAGGCAAGAGTGTGAGTATCTCT 59.553 47.826 0.00 0.00 39.79 3.10
2113 5931 3.446873 AGGCAAGAGTGTGAGTATCTCTG 59.553 47.826 0.00 0.00 38.37 3.35
2114 5932 3.445450 GGCAAGAGTGTGAGTATCTCTGA 59.555 47.826 0.00 0.00 38.37 3.27
2115 5933 4.081972 GGCAAGAGTGTGAGTATCTCTGAA 60.082 45.833 0.00 0.00 38.37 3.02
2116 5934 5.101628 GCAAGAGTGTGAGTATCTCTGAAG 58.898 45.833 0.00 0.00 38.37 3.02
2117 5935 4.981806 AGAGTGTGAGTATCTCTGAAGC 57.018 45.455 0.00 0.00 37.20 3.86
2118 5936 3.699038 AGAGTGTGAGTATCTCTGAAGCC 59.301 47.826 0.00 0.00 37.20 4.35
2119 5937 2.763448 AGTGTGAGTATCTCTGAAGCCC 59.237 50.000 0.00 0.00 34.92 5.19
2120 5938 2.111384 TGTGAGTATCTCTGAAGCCCC 58.889 52.381 0.00 0.00 34.92 5.80
2121 5939 1.414550 GTGAGTATCTCTGAAGCCCCC 59.585 57.143 0.00 0.00 34.92 5.40
2122 5940 1.008327 TGAGTATCTCTGAAGCCCCCA 59.992 52.381 0.00 0.00 34.92 4.96
2123 5941 2.334023 GAGTATCTCTGAAGCCCCCAT 58.666 52.381 0.00 0.00 0.00 4.00
2124 5942 2.038295 GAGTATCTCTGAAGCCCCCATG 59.962 54.545 0.00 0.00 0.00 3.66
2125 5943 1.072965 GTATCTCTGAAGCCCCCATGG 59.927 57.143 4.14 4.14 37.09 3.66
2138 5956 4.467084 CATGGGGTGGACGGACGG 62.467 72.222 0.00 0.00 0.00 4.79
2144 5962 4.404098 GTGGACGGACGGGCCAAT 62.404 66.667 9.56 0.00 35.94 3.16
2145 5963 4.402528 TGGACGGACGGGCCAATG 62.403 66.667 4.83 0.00 35.94 2.82
2146 5964 4.090588 GGACGGACGGGCCAATGA 62.091 66.667 4.39 0.00 35.94 2.57
2147 5965 2.818274 GACGGACGGGCCAATGAC 60.818 66.667 4.39 0.00 35.94 3.06
2148 5966 4.404098 ACGGACGGGCCAATGACC 62.404 66.667 4.39 2.43 35.94 4.02
2149 5967 4.096003 CGGACGGGCCAATGACCT 62.096 66.667 4.39 0.00 35.94 3.85
2150 5968 2.124695 GGACGGGCCAATGACCTC 60.125 66.667 4.39 0.00 36.34 3.85
2151 5969 2.670148 GGACGGGCCAATGACCTCT 61.670 63.158 4.39 0.00 36.34 3.69
2152 5970 1.335132 GGACGGGCCAATGACCTCTA 61.335 60.000 4.39 0.00 36.34 2.43
2153 5971 0.105039 GACGGGCCAATGACCTCTAG 59.895 60.000 4.39 0.00 0.00 2.43
2154 5972 0.617820 ACGGGCCAATGACCTCTAGT 60.618 55.000 4.39 0.00 0.00 2.57
2155 5973 1.342674 ACGGGCCAATGACCTCTAGTA 60.343 52.381 4.39 0.00 0.00 1.82
2156 5974 1.760613 CGGGCCAATGACCTCTAGTAA 59.239 52.381 4.39 0.00 0.00 2.24
2157 5975 2.483188 CGGGCCAATGACCTCTAGTAAC 60.483 54.545 4.39 0.00 0.00 2.50
2158 5976 2.504175 GGGCCAATGACCTCTAGTAACA 59.496 50.000 4.39 0.00 0.00 2.41
2159 5977 3.136626 GGGCCAATGACCTCTAGTAACAT 59.863 47.826 4.39 0.00 0.00 2.71
2160 5978 4.381411 GGCCAATGACCTCTAGTAACATC 58.619 47.826 0.00 0.00 0.00 3.06
2161 5979 4.051922 GCCAATGACCTCTAGTAACATCG 58.948 47.826 0.00 0.00 0.00 3.84
2162 5980 4.621991 CCAATGACCTCTAGTAACATCGG 58.378 47.826 0.00 0.00 0.00 4.18
2163 5981 4.051922 CAATGACCTCTAGTAACATCGGC 58.948 47.826 0.00 0.00 0.00 5.54
2164 5982 2.730382 TGACCTCTAGTAACATCGGCA 58.270 47.619 0.00 0.00 0.00 5.69
2165 5983 2.426024 TGACCTCTAGTAACATCGGCAC 59.574 50.000 0.00 0.00 0.00 5.01
2166 5984 1.755380 ACCTCTAGTAACATCGGCACC 59.245 52.381 0.00 0.00 0.00 5.01
2167 5985 1.754803 CCTCTAGTAACATCGGCACCA 59.245 52.381 0.00 0.00 0.00 4.17
2168 5986 2.223829 CCTCTAGTAACATCGGCACCAG 60.224 54.545 0.00 0.00 0.00 4.00
2169 5987 1.136305 TCTAGTAACATCGGCACCAGC 59.864 52.381 0.00 0.00 41.10 4.85
2170 5988 1.137086 CTAGTAACATCGGCACCAGCT 59.863 52.381 0.00 0.00 41.70 4.24
2171 5989 0.108138 AGTAACATCGGCACCAGCTC 60.108 55.000 0.00 0.00 41.70 4.09
2172 5990 1.153647 TAACATCGGCACCAGCTCG 60.154 57.895 0.00 0.00 41.70 5.03
2173 5991 1.600511 TAACATCGGCACCAGCTCGA 61.601 55.000 0.00 0.00 43.76 4.04
2174 5992 2.584418 CATCGGCACCAGCTCGAG 60.584 66.667 8.45 8.45 43.21 4.04
2175 5993 2.755876 ATCGGCACCAGCTCGAGA 60.756 61.111 18.75 0.00 43.21 4.04
2176 5994 2.780094 ATCGGCACCAGCTCGAGAG 61.780 63.158 18.75 7.53 43.21 3.20
2186 6004 2.259818 CTCGAGAGCACGGCAGTT 59.740 61.111 6.58 0.00 0.00 3.16
2187 6005 1.506718 CTCGAGAGCACGGCAGTTA 59.493 57.895 6.58 0.00 0.00 2.24
2188 6006 0.524392 CTCGAGAGCACGGCAGTTAG 60.524 60.000 6.58 0.00 0.00 2.34
2189 6007 1.517257 CGAGAGCACGGCAGTTAGG 60.517 63.158 0.00 0.00 0.00 2.69
2190 6008 1.890894 GAGAGCACGGCAGTTAGGA 59.109 57.895 0.00 0.00 0.00 2.94
2191 6009 0.461961 GAGAGCACGGCAGTTAGGAT 59.538 55.000 0.00 0.00 0.00 3.24
2192 6010 1.681793 GAGAGCACGGCAGTTAGGATA 59.318 52.381 0.00 0.00 0.00 2.59
2193 6011 2.297597 GAGAGCACGGCAGTTAGGATAT 59.702 50.000 0.00 0.00 0.00 1.63
2194 6012 2.297597 AGAGCACGGCAGTTAGGATATC 59.702 50.000 0.00 0.00 0.00 1.63
2195 6013 1.344763 AGCACGGCAGTTAGGATATCC 59.655 52.381 14.41 14.41 0.00 2.59
2196 6014 1.070134 GCACGGCAGTTAGGATATCCA 59.930 52.381 23.81 7.13 38.89 3.41
2197 6015 2.289694 GCACGGCAGTTAGGATATCCAT 60.290 50.000 23.81 11.14 38.89 3.41
2198 6016 3.589988 CACGGCAGTTAGGATATCCATC 58.410 50.000 23.81 12.62 38.89 3.51
2199 6017 3.006859 CACGGCAGTTAGGATATCCATCA 59.993 47.826 23.81 5.61 38.89 3.07
2200 6018 3.646162 ACGGCAGTTAGGATATCCATCAA 59.354 43.478 23.81 11.34 38.89 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.005450 TGCCCCTTGACTATTTGGTCC 59.995 52.381 0.00 0.00 35.54 4.46
7 8 1.474077 GTGCTGCCCCTTGACTATTTG 59.526 52.381 0.00 0.00 0.00 2.32
112 118 7.744733 TGCATGGATTCATCTACACCTTATAA 58.255 34.615 0.00 0.00 0.00 0.98
117 123 3.181447 CCTGCATGGATTCATCTACACCT 60.181 47.826 0.00 0.00 38.35 4.00
118 124 3.144506 CCTGCATGGATTCATCTACACC 58.855 50.000 0.00 0.00 38.35 4.16
119 125 2.551459 GCCTGCATGGATTCATCTACAC 59.449 50.000 6.40 0.00 38.35 2.90
121 127 3.072944 GAGCCTGCATGGATTCATCTAC 58.927 50.000 6.40 0.00 38.35 2.59
122 128 2.289257 CGAGCCTGCATGGATTCATCTA 60.289 50.000 6.40 0.00 38.35 1.98
123 129 1.542767 CGAGCCTGCATGGATTCATCT 60.543 52.381 6.40 0.00 38.35 2.90
124 130 0.873054 CGAGCCTGCATGGATTCATC 59.127 55.000 6.40 0.00 38.35 2.92
138 177 1.066114 CGTCGAGTCTGAAACGAGCC 61.066 60.000 7.49 0.00 37.31 4.70
139 178 0.110328 TCGTCGAGTCTGAAACGAGC 60.110 55.000 7.49 3.76 39.04 5.03
148 187 0.672711 TCCATCGTGTCGTCGAGTCT 60.673 55.000 0.00 0.00 43.00 3.24
149 188 0.247735 CTCCATCGTGTCGTCGAGTC 60.248 60.000 0.00 0.00 43.00 3.36
155 194 3.338126 GACGCCTCCATCGTGTCGT 62.338 63.158 0.00 0.00 40.59 4.34
156 195 2.579787 GACGCCTCCATCGTGTCG 60.580 66.667 0.00 0.00 40.59 4.35
158 197 4.129737 CGGACGCCTCCATCGTGT 62.130 66.667 2.54 0.00 40.59 4.49
214 253 1.888018 GGTCGTCAATCCAGACCGA 59.112 57.895 0.00 0.00 43.96 4.69
262 301 4.439253 AGTGAAAGGCCTAAGACAACTT 57.561 40.909 5.16 0.00 39.81 2.66
263 302 5.013183 ACATAGTGAAAGGCCTAAGACAACT 59.987 40.000 5.16 7.17 0.00 3.16
266 305 6.614694 TTACATAGTGAAAGGCCTAAGACA 57.385 37.500 5.16 0.77 0.00 3.41
267 306 5.524281 GCTTACATAGTGAAAGGCCTAAGAC 59.476 44.000 5.16 2.24 0.00 3.01
270 309 4.226394 TGGCTTACATAGTGAAAGGCCTAA 59.774 41.667 5.16 0.00 43.15 2.69
272 311 2.576191 TGGCTTACATAGTGAAAGGCCT 59.424 45.455 0.00 0.00 43.15 5.19
273 312 2.999331 TGGCTTACATAGTGAAAGGCC 58.001 47.619 0.00 0.00 43.15 5.19
275 314 6.147821 CCGATTATGGCTTACATAGTGAAAGG 59.852 42.308 0.00 0.00 42.69 3.11
276 315 6.706270 ACCGATTATGGCTTACATAGTGAAAG 59.294 38.462 0.00 0.00 42.69 2.62
277 316 6.481976 CACCGATTATGGCTTACATAGTGAAA 59.518 38.462 0.00 0.00 42.69 2.69
279 318 5.538118 CACCGATTATGGCTTACATAGTGA 58.462 41.667 0.00 0.00 42.69 3.41
280 319 4.152402 GCACCGATTATGGCTTACATAGTG 59.848 45.833 0.00 0.00 42.69 2.74
281 320 4.202315 TGCACCGATTATGGCTTACATAGT 60.202 41.667 0.00 0.00 42.69 2.12
284 323 3.207265 TGCACCGATTATGGCTTACAT 57.793 42.857 0.00 0.00 43.68 2.29
286 325 4.364415 TTTTGCACCGATTATGGCTTAC 57.636 40.909 0.00 0.00 0.00 2.34
288 327 4.470334 AATTTTGCACCGATTATGGCTT 57.530 36.364 0.00 0.00 0.00 4.35
289 328 4.183101 CAAATTTTGCACCGATTATGGCT 58.817 39.130 0.00 0.00 0.00 4.75
290 329 4.519191 CAAATTTTGCACCGATTATGGC 57.481 40.909 0.00 0.00 0.00 4.40
304 343 9.566530 GGTGTTAAATGTCAAAAAGCAAATTTT 57.433 25.926 0.00 0.00 43.04 1.82
305 344 7.907563 CGGTGTTAAATGTCAAAAAGCAAATTT 59.092 29.630 0.00 0.00 0.00 1.82
306 345 7.278868 TCGGTGTTAAATGTCAAAAAGCAAATT 59.721 29.630 0.00 0.00 0.00 1.82
307 346 6.758886 TCGGTGTTAAATGTCAAAAAGCAAAT 59.241 30.769 0.00 0.00 0.00 2.32
308 347 6.100004 TCGGTGTTAAATGTCAAAAAGCAAA 58.900 32.000 0.00 0.00 0.00 3.68
309 348 5.651530 TCGGTGTTAAATGTCAAAAAGCAA 58.348 33.333 0.00 0.00 0.00 3.91
310 349 5.250235 TCGGTGTTAAATGTCAAAAAGCA 57.750 34.783 0.00 0.00 0.00 3.91
311 350 5.388371 GCATCGGTGTTAAATGTCAAAAAGC 60.388 40.000 0.00 0.00 0.00 3.51
312 351 5.118510 GGCATCGGTGTTAAATGTCAAAAAG 59.881 40.000 0.00 0.00 0.00 2.27
313 352 4.985409 GGCATCGGTGTTAAATGTCAAAAA 59.015 37.500 0.00 0.00 0.00 1.94
317 356 2.088423 GGGCATCGGTGTTAAATGTCA 58.912 47.619 0.00 0.00 0.00 3.58
318 357 2.365582 AGGGCATCGGTGTTAAATGTC 58.634 47.619 0.00 0.00 0.00 3.06
319 358 2.507407 AGGGCATCGGTGTTAAATGT 57.493 45.000 0.00 0.00 0.00 2.71
320 359 3.275143 TGTAGGGCATCGGTGTTAAATG 58.725 45.455 0.00 0.00 0.00 2.32
321 360 3.637911 TGTAGGGCATCGGTGTTAAAT 57.362 42.857 0.00 0.00 0.00 1.40
322 361 3.637911 ATGTAGGGCATCGGTGTTAAA 57.362 42.857 0.00 0.00 30.67 1.52
323 362 3.275143 CAATGTAGGGCATCGGTGTTAA 58.725 45.455 0.00 0.00 36.67 2.01
324 363 2.237643 ACAATGTAGGGCATCGGTGTTA 59.762 45.455 0.00 0.00 36.67 2.41
326 365 0.618458 ACAATGTAGGGCATCGGTGT 59.382 50.000 0.00 0.00 36.67 4.16
327 366 1.299541 GACAATGTAGGGCATCGGTG 58.700 55.000 0.00 0.00 36.67 4.94
329 368 0.180171 TGGACAATGTAGGGCATCGG 59.820 55.000 0.00 0.00 36.67 4.18
330 369 1.586422 CTGGACAATGTAGGGCATCG 58.414 55.000 0.00 0.00 36.67 3.84
331 370 1.312815 GCTGGACAATGTAGGGCATC 58.687 55.000 0.00 0.00 36.67 3.91
332 371 0.106519 GGCTGGACAATGTAGGGCAT 60.107 55.000 0.00 0.00 40.03 4.40
333 372 1.302949 GGCTGGACAATGTAGGGCA 59.697 57.895 0.00 0.00 0.00 5.36
335 374 1.153168 CGGGCTGGACAATGTAGGG 60.153 63.158 0.00 0.00 0.00 3.53
337 376 0.744414 CACCGGGCTGGACAATGTAG 60.744 60.000 21.81 0.00 42.00 2.74
338 377 1.298340 CACCGGGCTGGACAATGTA 59.702 57.895 21.81 0.00 42.00 2.29
339 378 2.034066 CACCGGGCTGGACAATGT 59.966 61.111 21.81 0.00 42.00 2.71
346 385 3.561120 TTACTTGGCACCGGGCTGG 62.561 63.158 11.83 11.83 44.01 4.85
347 386 1.175983 TTTTACTTGGCACCGGGCTG 61.176 55.000 6.32 0.00 44.01 4.85
364 403 7.396540 AGAAACATCGATGCCTAGAATTTTT 57.603 32.000 25.11 13.91 0.00 1.94
366 405 7.275920 AGTAGAAACATCGATGCCTAGAATTT 58.724 34.615 25.11 15.30 0.00 1.82
368 407 6.412362 AGTAGAAACATCGATGCCTAGAAT 57.588 37.500 25.11 4.92 0.00 2.40
371 410 4.210120 GCAAGTAGAAACATCGATGCCTAG 59.790 45.833 25.11 12.38 0.00 3.02
374 413 2.939103 AGCAAGTAGAAACATCGATGCC 59.061 45.455 25.11 14.15 33.19 4.40
375 414 4.582459 GAAGCAAGTAGAAACATCGATGC 58.418 43.478 25.11 8.76 0.00 3.91
376 415 4.259970 CCGAAGCAAGTAGAAACATCGATG 60.260 45.833 23.68 23.68 0.00 3.84
377 416 3.865745 CCGAAGCAAGTAGAAACATCGAT 59.134 43.478 0.00 0.00 0.00 3.59
379 418 2.993899 ACCGAAGCAAGTAGAAACATCG 59.006 45.455 0.00 0.00 0.00 3.84
380 419 3.424962 GCACCGAAGCAAGTAGAAACATC 60.425 47.826 0.00 0.00 0.00 3.06
381 420 2.484264 GCACCGAAGCAAGTAGAAACAT 59.516 45.455 0.00 0.00 0.00 2.71
383 422 1.197036 GGCACCGAAGCAAGTAGAAAC 59.803 52.381 1.64 0.00 35.83 2.78
384 423 1.202710 TGGCACCGAAGCAAGTAGAAA 60.203 47.619 1.64 0.00 35.83 2.52
386 425 0.394938 TTGGCACCGAAGCAAGTAGA 59.605 50.000 0.00 0.00 35.83 2.59
387 426 1.234821 TTTGGCACCGAAGCAAGTAG 58.765 50.000 0.00 0.00 35.83 2.57
389 428 1.000274 GAATTTGGCACCGAAGCAAGT 60.000 47.619 0.00 0.00 35.83 3.16
390 429 1.701704 GAATTTGGCACCGAAGCAAG 58.298 50.000 0.00 0.00 35.83 4.01
391 430 0.039617 CGAATTTGGCACCGAAGCAA 60.040 50.000 0.00 0.00 35.83 3.91
394 433 0.109781 CACCGAATTTGGCACCGAAG 60.110 55.000 12.02 0.00 0.00 3.79
395 434 0.535328 TCACCGAATTTGGCACCGAA 60.535 50.000 12.02 0.00 0.00 4.30
397 436 1.501741 CTCACCGAATTTGGCACCG 59.498 57.895 12.02 0.00 0.00 4.94
398 437 1.212751 GCTCACCGAATTTGGCACC 59.787 57.895 12.02 0.00 0.00 5.01
399 438 1.212751 GGCTCACCGAATTTGGCAC 59.787 57.895 12.02 0.00 0.00 5.01
400 439 0.825425 TTGGCTCACCGAATTTGGCA 60.825 50.000 12.02 0.00 39.70 4.92
401 440 0.532115 ATTGGCTCACCGAATTTGGC 59.468 50.000 12.02 0.00 39.70 4.52
402 441 4.082245 AGTTTATTGGCTCACCGAATTTGG 60.082 41.667 10.45 10.45 39.70 3.28
403 442 5.059404 AGTTTATTGGCTCACCGAATTTG 57.941 39.130 0.00 0.00 39.70 2.32
404 443 6.625081 GCTTAGTTTATTGGCTCACCGAATTT 60.625 38.462 0.00 0.00 39.70 1.82
405 444 5.163652 GCTTAGTTTATTGGCTCACCGAATT 60.164 40.000 0.00 0.00 39.70 2.17
406 445 4.335594 GCTTAGTTTATTGGCTCACCGAAT 59.664 41.667 0.00 0.00 39.70 3.34
408 447 3.267483 GCTTAGTTTATTGGCTCACCGA 58.733 45.455 0.00 0.00 39.70 4.69
409 448 2.030457 CGCTTAGTTTATTGGCTCACCG 59.970 50.000 0.00 0.00 39.70 4.94
410 449 2.223272 GCGCTTAGTTTATTGGCTCACC 60.223 50.000 0.00 0.00 0.00 4.02
412 451 1.663643 CGCGCTTAGTTTATTGGCTCA 59.336 47.619 5.56 0.00 0.00 4.26
414 453 1.664151 GACGCGCTTAGTTTATTGGCT 59.336 47.619 5.73 0.00 0.00 4.75
417 456 3.124636 ACCAAGACGCGCTTAGTTTATTG 59.875 43.478 5.73 0.00 34.31 1.90
418 457 3.332034 ACCAAGACGCGCTTAGTTTATT 58.668 40.909 5.73 0.00 34.31 1.40
419 458 2.928116 GACCAAGACGCGCTTAGTTTAT 59.072 45.455 5.73 0.00 34.31 1.40
421 460 1.145803 GACCAAGACGCGCTTAGTTT 58.854 50.000 5.73 0.00 34.31 2.66
422 461 0.032952 TGACCAAGACGCGCTTAGTT 59.967 50.000 5.73 0.00 34.31 2.24
423 462 0.246635 ATGACCAAGACGCGCTTAGT 59.753 50.000 5.73 10.08 34.31 2.24
424 463 1.359848 AATGACCAAGACGCGCTTAG 58.640 50.000 5.73 6.60 34.31 2.18
425 464 1.730064 GAAATGACCAAGACGCGCTTA 59.270 47.619 5.73 0.00 34.31 3.09
426 465 0.517316 GAAATGACCAAGACGCGCTT 59.483 50.000 5.73 8.13 37.29 4.68
427 466 0.320771 AGAAATGACCAAGACGCGCT 60.321 50.000 5.73 0.50 0.00 5.92
428 467 0.095417 GAGAAATGACCAAGACGCGC 59.905 55.000 5.73 0.00 0.00 6.86
430 469 2.476854 GCATGAGAAATGACCAAGACGC 60.477 50.000 0.00 0.00 0.00 5.19
432 471 3.002791 TCGCATGAGAAATGACCAAGAC 58.997 45.455 0.00 0.00 0.00 3.01
433 472 3.333029 TCGCATGAGAAATGACCAAGA 57.667 42.857 0.00 0.00 0.00 3.02
434 473 3.730061 GCTTCGCATGAGAAATGACCAAG 60.730 47.826 13.08 0.13 0.00 3.61
436 475 1.739466 GCTTCGCATGAGAAATGACCA 59.261 47.619 13.08 0.00 0.00 4.02
437 476 1.739466 TGCTTCGCATGAGAAATGACC 59.261 47.619 13.08 1.07 31.71 4.02
440 479 2.912967 GTGTTGCTTCGCATGAGAAATG 59.087 45.455 13.08 3.92 38.76 2.32
441 480 2.095059 GGTGTTGCTTCGCATGAGAAAT 60.095 45.455 13.08 0.00 38.76 2.17
442 481 1.266718 GGTGTTGCTTCGCATGAGAAA 59.733 47.619 13.08 0.00 38.76 2.52
443 482 0.874390 GGTGTTGCTTCGCATGAGAA 59.126 50.000 11.56 11.56 38.76 2.87
448 487 0.608856 TCATGGGTGTTGCTTCGCAT 60.609 50.000 0.00 0.00 38.76 4.73
450 489 1.210155 GTCATGGGTGTTGCTTCGC 59.790 57.895 0.00 0.00 0.00 4.70
451 490 0.238289 GTGTCATGGGTGTTGCTTCG 59.762 55.000 0.00 0.00 0.00 3.79
452 491 1.267806 CAGTGTCATGGGTGTTGCTTC 59.732 52.381 0.00 0.00 0.00 3.86
453 492 1.321474 CAGTGTCATGGGTGTTGCTT 58.679 50.000 0.00 0.00 0.00 3.91
454 493 0.538057 CCAGTGTCATGGGTGTTGCT 60.538 55.000 0.00 0.00 36.64 3.91
455 494 0.823356 ACCAGTGTCATGGGTGTTGC 60.823 55.000 0.00 0.00 45.25 4.17
456 495 1.238439 GACCAGTGTCATGGGTGTTG 58.762 55.000 3.34 0.00 45.25 3.33
458 497 0.768221 AGGACCAGTGTCATGGGTGT 60.768 55.000 3.34 0.00 45.25 4.16
459 498 0.401738 AAGGACCAGTGTCATGGGTG 59.598 55.000 3.34 0.00 45.25 4.61
460 499 1.909302 CTAAGGACCAGTGTCATGGGT 59.091 52.381 0.00 0.00 45.25 4.51
461 500 1.210478 CCTAAGGACCAGTGTCATGGG 59.790 57.143 0.00 0.00 45.25 4.00
465 504 3.853207 ACTTACCTAAGGACCAGTGTCA 58.147 45.455 0.00 0.00 43.65 3.58
466 505 4.562963 CCAACTTACCTAAGGACCAGTGTC 60.563 50.000 0.00 0.00 40.98 3.67
467 506 3.326880 CCAACTTACCTAAGGACCAGTGT 59.673 47.826 0.00 0.00 37.62 3.55
468 507 3.307480 CCCAACTTACCTAAGGACCAGTG 60.307 52.174 0.00 0.00 37.62 3.66
469 508 2.910977 CCCAACTTACCTAAGGACCAGT 59.089 50.000 0.00 0.00 37.62 4.00
470 509 2.910977 ACCCAACTTACCTAAGGACCAG 59.089 50.000 0.00 0.00 37.62 4.00
471 510 2.994355 ACCCAACTTACCTAAGGACCA 58.006 47.619 0.00 0.00 37.62 4.02
473 512 7.852550 ATATCTACCCAACTTACCTAAGGAC 57.147 40.000 0.00 0.00 37.62 3.85
497 536 8.902806 GGCCTGCATGCATATAAATTAGTAATA 58.097 33.333 22.97 0.00 0.00 0.98
498 537 7.147846 GGGCCTGCATGCATATAAATTAGTAAT 60.148 37.037 22.97 0.00 0.00 1.89
499 538 6.152661 GGGCCTGCATGCATATAAATTAGTAA 59.847 38.462 22.97 0.00 0.00 2.24
500 539 5.652014 GGGCCTGCATGCATATAAATTAGTA 59.348 40.000 22.97 0.00 0.00 1.82
501 540 4.463891 GGGCCTGCATGCATATAAATTAGT 59.536 41.667 22.97 0.00 0.00 2.24
502 541 4.439153 CGGGCCTGCATGCATATAAATTAG 60.439 45.833 22.97 5.79 0.00 1.73
503 542 3.443329 CGGGCCTGCATGCATATAAATTA 59.557 43.478 22.97 0.00 0.00 1.40
505 544 1.820519 CGGGCCTGCATGCATATAAAT 59.179 47.619 22.97 0.00 0.00 1.40
506 545 1.246649 CGGGCCTGCATGCATATAAA 58.753 50.000 22.97 0.00 0.00 1.40
507 546 0.110295 ACGGGCCTGCATGCATATAA 59.890 50.000 22.97 0.00 0.00 0.98
509 548 1.900016 CACGGGCCTGCATGCATAT 60.900 57.895 22.97 0.06 0.00 1.78
521 560 4.101448 ATCCACTCCAGCACGGGC 62.101 66.667 0.00 0.00 41.61 6.13
523 562 2.821366 GCATCCACTCCAGCACGG 60.821 66.667 0.00 0.00 0.00 4.94
524 563 3.190849 CGCATCCACTCCAGCACG 61.191 66.667 0.00 0.00 0.00 5.34
525 564 0.955428 TTTCGCATCCACTCCAGCAC 60.955 55.000 0.00 0.00 0.00 4.40
526 565 0.035152 ATTTCGCATCCACTCCAGCA 60.035 50.000 0.00 0.00 0.00 4.41
528 567 2.322355 AGATTTCGCATCCACTCCAG 57.678 50.000 0.00 0.00 0.00 3.86
529 568 2.787473 AAGATTTCGCATCCACTCCA 57.213 45.000 0.00 0.00 0.00 3.86
530 569 3.009723 TGAAAGATTTCGCATCCACTCC 58.990 45.455 1.18 0.00 40.01 3.85
531 570 4.008539 GTGAAAGATTTCGCATCCACTC 57.991 45.455 12.71 0.00 44.73 3.51
539 578 2.584791 ACGCATTGTGAAAGATTTCGC 58.415 42.857 11.08 11.08 45.38 4.70
551 590 1.959226 GACACCGGTCACGCATTGT 60.959 57.895 2.59 0.00 43.73 2.71
552 591 2.860293 GACACCGGTCACGCATTG 59.140 61.111 2.59 0.00 43.73 2.82
573 612 4.037923 ACGTCAGATGGCAGTTGAATTTTT 59.962 37.500 5.42 0.00 0.00 1.94
574 613 3.569701 ACGTCAGATGGCAGTTGAATTTT 59.430 39.130 5.42 0.00 0.00 1.82
575 614 3.149196 ACGTCAGATGGCAGTTGAATTT 58.851 40.909 5.42 0.00 0.00 1.82
576 615 2.783135 ACGTCAGATGGCAGTTGAATT 58.217 42.857 5.42 0.00 0.00 2.17
577 616 2.479566 ACGTCAGATGGCAGTTGAAT 57.520 45.000 5.42 0.00 0.00 2.57
578 617 3.610040 ATACGTCAGATGGCAGTTGAA 57.390 42.857 0.00 0.00 0.00 2.69
579 618 3.488553 CGTATACGTCAGATGGCAGTTGA 60.489 47.826 17.16 0.00 34.11 3.18
580 619 2.789339 CGTATACGTCAGATGGCAGTTG 59.211 50.000 17.16 0.00 34.11 3.16
581 620 3.079960 CGTATACGTCAGATGGCAGTT 57.920 47.619 17.16 0.00 34.11 3.16
582 621 2.776312 CGTATACGTCAGATGGCAGT 57.224 50.000 17.16 0.00 34.11 4.40
615 654 2.577700 TGTACTCGGTGCCACATTTTT 58.422 42.857 0.00 0.00 0.00 1.94
616 655 2.264005 TGTACTCGGTGCCACATTTT 57.736 45.000 0.00 0.00 0.00 1.82
617 656 2.489938 ATGTACTCGGTGCCACATTT 57.510 45.000 0.00 0.00 0.00 2.32
618 657 2.500098 ACTATGTACTCGGTGCCACATT 59.500 45.455 0.00 0.00 33.78 2.71
619 658 2.108168 ACTATGTACTCGGTGCCACAT 58.892 47.619 0.00 0.00 35.81 3.21
620 659 1.203758 CACTATGTACTCGGTGCCACA 59.796 52.381 0.00 0.00 0.00 4.17
621 660 1.470979 CCACTATGTACTCGGTGCCAC 60.471 57.143 0.00 0.00 0.00 5.01
622 661 0.821517 CCACTATGTACTCGGTGCCA 59.178 55.000 0.00 0.00 0.00 4.92
623 662 1.108776 TCCACTATGTACTCGGTGCC 58.891 55.000 0.00 0.00 0.00 5.01
624 663 2.481449 CCTTCCACTATGTACTCGGTGC 60.481 54.545 0.00 0.00 0.00 5.01
625 664 2.481449 GCCTTCCACTATGTACTCGGTG 60.481 54.545 0.00 0.38 0.00 4.94
626 665 1.755380 GCCTTCCACTATGTACTCGGT 59.245 52.381 0.00 0.00 0.00 4.69
627 666 1.068741 GGCCTTCCACTATGTACTCGG 59.931 57.143 0.00 0.00 0.00 4.63
628 667 2.032620 AGGCCTTCCACTATGTACTCG 58.967 52.381 0.00 0.00 33.74 4.18
629 668 5.609533 TTAAGGCCTTCCACTATGTACTC 57.390 43.478 24.49 0.00 33.74 2.59
630 669 5.724854 TCTTTAAGGCCTTCCACTATGTACT 59.275 40.000 24.49 0.00 33.74 2.73
631 670 5.985911 TCTTTAAGGCCTTCCACTATGTAC 58.014 41.667 24.49 0.00 33.74 2.90
632 671 6.591935 CATCTTTAAGGCCTTCCACTATGTA 58.408 40.000 24.49 0.00 33.74 2.29
633 672 5.440610 CATCTTTAAGGCCTTCCACTATGT 58.559 41.667 24.49 0.00 33.74 2.29
634 673 4.276926 GCATCTTTAAGGCCTTCCACTATG 59.723 45.833 24.49 19.69 33.74 2.23
635 674 4.464947 GCATCTTTAAGGCCTTCCACTAT 58.535 43.478 24.49 7.84 33.74 2.12
636 675 3.371595 GGCATCTTTAAGGCCTTCCACTA 60.372 47.826 24.49 0.00 44.32 2.74
637 676 2.621668 GGCATCTTTAAGGCCTTCCACT 60.622 50.000 24.49 0.00 44.32 4.00
638 677 1.751351 GGCATCTTTAAGGCCTTCCAC 59.249 52.381 24.49 5.66 44.32 4.02
639 678 1.341976 GGGCATCTTTAAGGCCTTCCA 60.342 52.381 24.49 7.32 46.87 3.53
640 679 1.403814 GGGCATCTTTAAGGCCTTCC 58.596 55.000 24.49 15.06 46.87 3.46
645 684 1.828224 CCGGGGGCATCTTTAAGGC 60.828 63.158 0.00 0.00 0.00 4.35
646 685 4.579127 CCGGGGGCATCTTTAAGG 57.421 61.111 0.00 0.00 0.00 2.69
666 705 2.785389 ACCAAGGGCAAGGGGGAA 60.785 61.111 0.00 0.00 0.00 3.97
669 708 1.683365 CATCACCAAGGGCAAGGGG 60.683 63.158 0.00 0.00 0.00 4.79
782 828 6.208599 TGTCTTGGGAAAATAATTGACCACTC 59.791 38.462 0.00 0.00 0.00 3.51
927 991 8.477419 TCTTCTTCTTCTTCTTCTTCTTCTCT 57.523 34.615 0.00 0.00 0.00 3.10
956 1020 3.971245 TCCTCCTCTTCTTGCTTTCTC 57.029 47.619 0.00 0.00 0.00 2.87
1011 2705 2.863153 CCGCTGTTGCTGCTGTAC 59.137 61.111 0.00 0.00 36.97 2.90
1155 2867 4.410400 CCTGACGGCCCCTTGTCC 62.410 72.222 0.00 0.00 34.18 4.02
1197 2912 3.741344 GCGTCTTTGAGAGCTTCAGTTAA 59.259 43.478 0.00 0.00 37.07 2.01
1198 2913 3.318017 GCGTCTTTGAGAGCTTCAGTTA 58.682 45.455 0.00 0.00 37.07 2.24
1199 2914 2.139118 GCGTCTTTGAGAGCTTCAGTT 58.861 47.619 0.00 0.00 37.07 3.16
1200 2915 1.606737 GGCGTCTTTGAGAGCTTCAGT 60.607 52.381 0.00 0.00 37.07 3.41
1226 2944 1.738365 GCGAGTGCATCTGACAGACAT 60.738 52.381 7.47 0.00 42.15 3.06
1255 2973 4.955335 TCTGGTGGATCTAAAGTAAGGGA 58.045 43.478 0.00 0.00 0.00 4.20
1261 2979 6.567602 AAGCTAATCTGGTGGATCTAAAGT 57.432 37.500 0.00 0.00 32.76 2.66
1265 2989 6.156949 AGTGAAAAGCTAATCTGGTGGATCTA 59.843 38.462 0.00 0.00 32.76 1.98
1269 2993 4.640771 AGTGAAAAGCTAATCTGGTGGA 57.359 40.909 0.00 0.00 0.00 4.02
1273 2997 5.645497 ACTGCTAAGTGAAAAGCTAATCTGG 59.355 40.000 0.00 0.00 39.53 3.86
1293 3017 5.358160 AGAAAACCCAATATGAAGCTACTGC 59.642 40.000 0.00 0.00 40.05 4.40
1294 3018 7.396540 AAGAAAACCCAATATGAAGCTACTG 57.603 36.000 0.00 0.00 0.00 2.74
1295 3019 6.603599 GGAAGAAAACCCAATATGAAGCTACT 59.396 38.462 0.00 0.00 0.00 2.57
1393 3145 0.178981 AGGCACCACAAAGTGATGCT 60.179 50.000 15.42 0.31 40.34 3.79
1394 3146 0.242017 GAGGCACCACAAAGTGATGC 59.758 55.000 7.96 7.96 40.34 3.91
1395 3147 0.883833 GGAGGCACCACAAAGTGATG 59.116 55.000 0.00 0.00 40.34 3.07
1407 3159 0.036306 TCGGGAAGAAAAGGAGGCAC 59.964 55.000 0.00 0.00 0.00 5.01
1411 3163 0.796927 GCGTTCGGGAAGAAAAGGAG 59.203 55.000 0.00 0.00 41.10 3.69
1412 3164 0.395312 AGCGTTCGGGAAGAAAAGGA 59.605 50.000 0.00 0.00 41.10 3.36
1413 3165 2.088950 TAGCGTTCGGGAAGAAAAGG 57.911 50.000 0.00 0.00 41.10 3.11
1414 3166 3.259064 TCATAGCGTTCGGGAAGAAAAG 58.741 45.455 0.00 0.00 41.10 2.27
1423 3184 1.003545 CAGCCAAATCATAGCGTTCGG 60.004 52.381 0.00 0.00 0.00 4.30
1424 3185 1.665679 ACAGCCAAATCATAGCGTTCG 59.334 47.619 0.00 0.00 0.00 3.95
1434 3195 1.237285 ACCAGTCGCACAGCCAAATC 61.237 55.000 0.00 0.00 0.00 2.17
1460 3221 3.110447 ACGCACAGCCAAATCATTTTT 57.890 38.095 0.00 0.00 0.00 1.94
1461 3222 2.818130 ACGCACAGCCAAATCATTTT 57.182 40.000 0.00 0.00 0.00 1.82
1462 3223 3.081061 TCTACGCACAGCCAAATCATTT 58.919 40.909 0.00 0.00 0.00 2.32
1463 3224 2.710377 TCTACGCACAGCCAAATCATT 58.290 42.857 0.00 0.00 0.00 2.57
1464 3225 2.401583 TCTACGCACAGCCAAATCAT 57.598 45.000 0.00 0.00 0.00 2.45
1465 3226 1.804151 GTTCTACGCACAGCCAAATCA 59.196 47.619 0.00 0.00 0.00 2.57
1466 3227 1.201921 CGTTCTACGCACAGCCAAATC 60.202 52.381 0.00 0.00 33.65 2.17
1467 3228 0.796312 CGTTCTACGCACAGCCAAAT 59.204 50.000 0.00 0.00 33.65 2.32
1468 3229 2.230892 CGTTCTACGCACAGCCAAA 58.769 52.632 0.00 0.00 33.65 3.28
1469 3230 3.945436 CGTTCTACGCACAGCCAA 58.055 55.556 0.00 0.00 33.65 4.52
1478 3239 1.372004 TTCACCCGTGCGTTCTACG 60.372 57.895 0.00 0.00 45.88 3.51
1490 3251 3.048337 TCAGTCCGTATTTGTTCACCC 57.952 47.619 0.00 0.00 0.00 4.61
1499 3260 4.837093 TGAATTCCCTTCAGTCCGTATT 57.163 40.909 2.27 0.00 38.97 1.89
1519 3280 1.153409 CTAGCACTGCCAGCCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
1520 3281 0.906756 TTCTAGCACTGCCAGCCTCT 60.907 55.000 0.00 0.00 0.00 3.69
1534 3295 7.621991 ACATTGATCTTTCGCGTATTTTCTAG 58.378 34.615 5.77 0.00 0.00 2.43
1578 3374 5.340439 ACACCTCTAAGAAGGGATAAACG 57.660 43.478 0.00 0.00 41.04 3.60
1589 3385 3.552132 TGCACAACAACACCTCTAAGA 57.448 42.857 0.00 0.00 0.00 2.10
1596 3392 2.791158 CGACTTCTTGCACAACAACACC 60.791 50.000 0.00 0.00 33.68 4.16
1617 3413 5.390567 CCAAATTAACACCAGCGACTAAGTC 60.391 44.000 0.00 0.00 0.00 3.01
1626 3423 3.438781 TCATCGTCCAAATTAACACCAGC 59.561 43.478 0.00 0.00 0.00 4.85
1627 3424 5.818136 ATCATCGTCCAAATTAACACCAG 57.182 39.130 0.00 0.00 0.00 4.00
1646 3443 1.596752 ACGTGCGTGCCTCAAATCA 60.597 52.632 0.00 0.00 0.00 2.57
1667 3464 1.379044 CAATGACCTGAGTGCCCCC 60.379 63.158 0.00 0.00 0.00 5.40
1668 3465 1.379044 CCAATGACCTGAGTGCCCC 60.379 63.158 0.00 0.00 0.00 5.80
1669 3466 0.962356 CACCAATGACCTGAGTGCCC 60.962 60.000 0.00 0.00 0.00 5.36
1670 3467 1.589716 GCACCAATGACCTGAGTGCC 61.590 60.000 2.09 0.00 46.25 5.01
1671 3468 1.878775 GCACCAATGACCTGAGTGC 59.121 57.895 0.00 0.00 45.99 4.40
1672 3469 2.625737 CTAGCACCAATGACCTGAGTG 58.374 52.381 0.00 0.00 0.00 3.51
1673 3470 1.065854 GCTAGCACCAATGACCTGAGT 60.066 52.381 10.63 0.00 0.00 3.41
1674 3471 1.209019 AGCTAGCACCAATGACCTGAG 59.791 52.381 18.83 0.00 0.00 3.35
1675 3472 1.279496 AGCTAGCACCAATGACCTGA 58.721 50.000 18.83 0.00 0.00 3.86
1676 3473 2.119801 AAGCTAGCACCAATGACCTG 57.880 50.000 18.83 0.00 0.00 4.00
1677 3474 2.887151 AAAGCTAGCACCAATGACCT 57.113 45.000 18.83 0.00 0.00 3.85
1678 3475 3.942130 AAAAAGCTAGCACCAATGACC 57.058 42.857 18.83 0.00 0.00 4.02
1679 3476 7.148590 CCAAAATAAAAAGCTAGCACCAATGAC 60.149 37.037 18.83 0.00 0.00 3.06
1680 3477 6.873076 CCAAAATAAAAAGCTAGCACCAATGA 59.127 34.615 18.83 0.00 0.00 2.57
1681 3478 6.402442 GCCAAAATAAAAAGCTAGCACCAATG 60.402 38.462 18.83 3.94 0.00 2.82
1682 3479 5.643348 GCCAAAATAAAAAGCTAGCACCAAT 59.357 36.000 18.83 0.54 0.00 3.16
1683 3480 4.994217 GCCAAAATAAAAAGCTAGCACCAA 59.006 37.500 18.83 0.00 0.00 3.67
1690 3487 5.968528 TCGGAAGCCAAAATAAAAAGCTA 57.031 34.783 0.00 0.00 32.39 3.32
1691 3488 4.864704 TCGGAAGCCAAAATAAAAAGCT 57.135 36.364 0.00 0.00 34.64 3.74
1693 3490 8.527567 TGTAAATCGGAAGCCAAAATAAAAAG 57.472 30.769 0.00 0.00 0.00 2.27
1699 3496 6.096673 ACTTTGTAAATCGGAAGCCAAAAT 57.903 33.333 0.00 0.00 0.00 1.82
1856 3656 4.488879 ACCCGTCACTCGTACTAAATTTC 58.511 43.478 0.00 0.00 37.94 2.17
1860 3660 5.446143 TTTTACCCGTCACTCGTACTAAA 57.554 39.130 0.00 0.00 37.94 1.85
1861 3661 5.446143 TTTTTACCCGTCACTCGTACTAA 57.554 39.130 0.00 0.00 37.94 2.24
1867 3667 3.744426 AGTTGATTTTTACCCGTCACTCG 59.256 43.478 0.00 0.00 39.52 4.18
1884 3684 5.007234 CAGTCGTGGACACAAAAATAGTTGA 59.993 40.000 3.12 0.00 34.60 3.18
1885 3685 5.007234 TCAGTCGTGGACACAAAAATAGTTG 59.993 40.000 3.12 0.00 34.60 3.16
1887 3687 4.510340 GTCAGTCGTGGACACAAAAATAGT 59.490 41.667 3.12 0.00 34.60 2.12
1888 3688 4.509970 TGTCAGTCGTGGACACAAAAATAG 59.490 41.667 3.12 0.00 40.16 1.73
1890 3690 3.275143 TGTCAGTCGTGGACACAAAAAT 58.725 40.909 3.12 0.00 40.16 1.82
1932 3732 6.426937 TGACACCTAGCATAAGTTTCAAAGAC 59.573 38.462 0.00 0.00 0.00 3.01
1934 3734 6.128172 CCTGACACCTAGCATAAGTTTCAAAG 60.128 42.308 0.00 0.00 0.00 2.77
1936 3736 5.221843 ACCTGACACCTAGCATAAGTTTCAA 60.222 40.000 0.00 0.00 0.00 2.69
1941 3741 2.501723 CCACCTGACACCTAGCATAAGT 59.498 50.000 0.00 0.00 0.00 2.24
1945 3745 1.198713 CTCCACCTGACACCTAGCAT 58.801 55.000 0.00 0.00 0.00 3.79
1947 3747 0.247736 CACTCCACCTGACACCTAGC 59.752 60.000 0.00 0.00 0.00 3.42
1948 3748 1.273606 CACACTCCACCTGACACCTAG 59.726 57.143 0.00 0.00 0.00 3.02
1949 3749 1.338107 CACACTCCACCTGACACCTA 58.662 55.000 0.00 0.00 0.00 3.08
1958 5776 1.833630 TGATCTGATCCACACTCCACC 59.166 52.381 14.71 0.00 0.00 4.61
1973 5791 1.211457 CCCTGCTTAGTGCCTTGATCT 59.789 52.381 0.00 0.00 42.00 2.75
2010 5828 3.506455 GGGCCTACCTCTGTTTCTTTTTC 59.494 47.826 0.84 0.00 35.85 2.29
2026 5844 8.170061 AGCAAACATATATAAATTCAGGGCCTA 58.830 33.333 5.28 0.00 0.00 3.93
2029 5847 8.244113 GGTAGCAAACATATATAAATTCAGGGC 58.756 37.037 0.00 0.00 0.00 5.19
2042 5860 8.991783 TCTACTAGTAGTGGTAGCAAACATAT 57.008 34.615 25.58 0.00 37.60 1.78
2043 5861 8.812513 TTCTACTAGTAGTGGTAGCAAACATA 57.187 34.615 25.58 2.47 37.60 2.29
2044 5862 7.396623 ACTTCTACTAGTAGTGGTAGCAAACAT 59.603 37.037 25.58 1.35 37.60 2.71
2045 5863 6.718454 ACTTCTACTAGTAGTGGTAGCAAACA 59.282 38.462 25.58 3.06 37.60 2.83
2046 5864 7.028361 CACTTCTACTAGTAGTGGTAGCAAAC 58.972 42.308 25.58 0.00 39.17 2.93
2047 5865 6.718454 ACACTTCTACTAGTAGTGGTAGCAAA 59.282 38.462 25.58 11.65 44.66 3.68
2048 5866 6.243900 ACACTTCTACTAGTAGTGGTAGCAA 58.756 40.000 25.58 12.27 44.66 3.91
2049 5867 5.813383 ACACTTCTACTAGTAGTGGTAGCA 58.187 41.667 25.58 5.58 44.66 3.49
2050 5868 7.856145 TTACACTTCTACTAGTAGTGGTAGC 57.144 40.000 25.58 0.00 44.66 3.58
2053 5871 8.529476 CCAATTTACACTTCTACTAGTAGTGGT 58.471 37.037 25.58 21.25 44.66 4.16
2054 5872 8.746530 TCCAATTTACACTTCTACTAGTAGTGG 58.253 37.037 25.58 20.72 44.66 4.00
2055 5873 9.570488 GTCCAATTTACACTTCTACTAGTAGTG 57.430 37.037 25.58 21.92 45.48 2.74
2056 5874 8.457261 CGTCCAATTTACACTTCTACTAGTAGT 58.543 37.037 25.58 10.10 34.84 2.73
2057 5875 8.457261 ACGTCCAATTTACACTTCTACTAGTAG 58.543 37.037 21.87 21.87 34.56 2.57
2058 5876 8.239314 CACGTCCAATTTACACTTCTACTAGTA 58.761 37.037 1.89 1.89 0.00 1.82
2059 5877 7.088905 CACGTCCAATTTACACTTCTACTAGT 58.911 38.462 0.00 0.00 0.00 2.57
2060 5878 7.061905 CACACGTCCAATTTACACTTCTACTAG 59.938 40.741 0.00 0.00 0.00 2.57
2061 5879 6.864685 CACACGTCCAATTTACACTTCTACTA 59.135 38.462 0.00 0.00 0.00 1.82
2062 5880 5.694910 CACACGTCCAATTTACACTTCTACT 59.305 40.000 0.00 0.00 0.00 2.57
2063 5881 5.693104 TCACACGTCCAATTTACACTTCTAC 59.307 40.000 0.00 0.00 0.00 2.59
2064 5882 5.845103 TCACACGTCCAATTTACACTTCTA 58.155 37.500 0.00 0.00 0.00 2.10
2065 5883 4.699637 TCACACGTCCAATTTACACTTCT 58.300 39.130 0.00 0.00 0.00 2.85
2066 5884 5.412526 TTCACACGTCCAATTTACACTTC 57.587 39.130 0.00 0.00 0.00 3.01
2067 5885 5.529430 TGATTCACACGTCCAATTTACACTT 59.471 36.000 0.00 0.00 0.00 3.16
2068 5886 5.060506 TGATTCACACGTCCAATTTACACT 58.939 37.500 0.00 0.00 0.00 3.55
2069 5887 5.351233 TGATTCACACGTCCAATTTACAC 57.649 39.130 0.00 0.00 0.00 2.90
2070 5888 4.454161 CCTGATTCACACGTCCAATTTACA 59.546 41.667 0.00 0.00 0.00 2.41
2071 5889 4.671766 GCCTGATTCACACGTCCAATTTAC 60.672 45.833 0.00 0.00 0.00 2.01
2072 5890 3.438781 GCCTGATTCACACGTCCAATTTA 59.561 43.478 0.00 0.00 0.00 1.40
2073 5891 2.228822 GCCTGATTCACACGTCCAATTT 59.771 45.455 0.00 0.00 0.00 1.82
2074 5892 1.812571 GCCTGATTCACACGTCCAATT 59.187 47.619 0.00 0.00 0.00 2.32
2075 5893 1.271325 TGCCTGATTCACACGTCCAAT 60.271 47.619 0.00 0.00 0.00 3.16
2076 5894 0.107643 TGCCTGATTCACACGTCCAA 59.892 50.000 0.00 0.00 0.00 3.53
2077 5895 0.107643 TTGCCTGATTCACACGTCCA 59.892 50.000 0.00 0.00 0.00 4.02
2078 5896 0.798776 CTTGCCTGATTCACACGTCC 59.201 55.000 0.00 0.00 0.00 4.79
2079 5897 1.728971 CTCTTGCCTGATTCACACGTC 59.271 52.381 0.00 0.00 0.00 4.34
2080 5898 1.070758 ACTCTTGCCTGATTCACACGT 59.929 47.619 0.00 0.00 0.00 4.49
2081 5899 1.462283 CACTCTTGCCTGATTCACACG 59.538 52.381 0.00 0.00 0.00 4.49
2082 5900 2.225019 CACACTCTTGCCTGATTCACAC 59.775 50.000 0.00 0.00 0.00 3.82
2083 5901 2.104622 TCACACTCTTGCCTGATTCACA 59.895 45.455 0.00 0.00 0.00 3.58
2084 5902 2.740981 CTCACACTCTTGCCTGATTCAC 59.259 50.000 0.00 0.00 0.00 3.18
2085 5903 2.369860 ACTCACACTCTTGCCTGATTCA 59.630 45.455 0.00 0.00 0.00 2.57
2086 5904 3.051081 ACTCACACTCTTGCCTGATTC 57.949 47.619 0.00 0.00 0.00 2.52
2087 5905 4.469227 AGATACTCACACTCTTGCCTGATT 59.531 41.667 0.00 0.00 0.00 2.57
2088 5906 4.029520 AGATACTCACACTCTTGCCTGAT 58.970 43.478 0.00 0.00 0.00 2.90
2089 5907 3.435275 AGATACTCACACTCTTGCCTGA 58.565 45.455 0.00 0.00 0.00 3.86
2090 5908 3.446873 AGAGATACTCACACTCTTGCCTG 59.553 47.826 0.00 0.00 37.69 4.85
2091 5909 3.446873 CAGAGATACTCACACTCTTGCCT 59.553 47.826 0.00 0.00 38.69 4.75
2092 5910 3.445450 TCAGAGATACTCACACTCTTGCC 59.555 47.826 0.00 0.00 38.69 4.52
2093 5911 4.710423 TCAGAGATACTCACACTCTTGC 57.290 45.455 0.00 0.00 38.69 4.01
2094 5912 5.101628 GCTTCAGAGATACTCACACTCTTG 58.898 45.833 0.00 0.00 38.69 3.02
2095 5913 4.159506 GGCTTCAGAGATACTCACACTCTT 59.840 45.833 0.00 0.00 38.69 2.85
2096 5914 3.699038 GGCTTCAGAGATACTCACACTCT 59.301 47.826 0.00 0.00 40.94 3.24
2097 5915 3.181480 GGGCTTCAGAGATACTCACACTC 60.181 52.174 0.00 0.00 32.06 3.51
2098 5916 2.763448 GGGCTTCAGAGATACTCACACT 59.237 50.000 0.00 0.00 32.06 3.55
2099 5917 2.159028 GGGGCTTCAGAGATACTCACAC 60.159 54.545 0.00 0.00 32.06 3.82
2100 5918 2.111384 GGGGCTTCAGAGATACTCACA 58.889 52.381 0.00 0.00 32.06 3.58
2101 5919 1.414550 GGGGGCTTCAGAGATACTCAC 59.585 57.143 0.00 0.00 32.06 3.51
2102 5920 1.008327 TGGGGGCTTCAGAGATACTCA 59.992 52.381 0.00 0.00 32.06 3.41
2103 5921 1.794714 TGGGGGCTTCAGAGATACTC 58.205 55.000 0.00 0.00 0.00 2.59
2104 5922 2.053244 CATGGGGGCTTCAGAGATACT 58.947 52.381 0.00 0.00 0.00 2.12
2105 5923 1.072965 CCATGGGGGCTTCAGAGATAC 59.927 57.143 2.85 0.00 0.00 2.24
2106 5924 1.438469 CCATGGGGGCTTCAGAGATA 58.562 55.000 2.85 0.00 0.00 1.98
2107 5925 2.238530 CCATGGGGGCTTCAGAGAT 58.761 57.895 2.85 0.00 0.00 2.75
2108 5926 3.745546 CCATGGGGGCTTCAGAGA 58.254 61.111 2.85 0.00 0.00 3.10
2121 5939 4.467084 CCGTCCGTCCACCCCATG 62.467 72.222 0.00 0.00 0.00 3.66
2127 5945 4.404098 ATTGGCCCGTCCGTCCAC 62.404 66.667 0.00 0.00 37.80 4.02
2128 5946 4.402528 CATTGGCCCGTCCGTCCA 62.403 66.667 0.00 0.00 37.80 4.02
2129 5947 4.090588 TCATTGGCCCGTCCGTCC 62.091 66.667 0.00 0.00 37.80 4.79
2130 5948 2.818274 GTCATTGGCCCGTCCGTC 60.818 66.667 0.00 0.00 37.80 4.79
2131 5949 4.404098 GGTCATTGGCCCGTCCGT 62.404 66.667 0.00 0.00 37.80 4.69
2132 5950 4.096003 AGGTCATTGGCCCGTCCG 62.096 66.667 3.00 0.00 37.80 4.79
2133 5951 1.335132 TAGAGGTCATTGGCCCGTCC 61.335 60.000 3.00 0.00 0.00 4.79
2134 5952 0.105039 CTAGAGGTCATTGGCCCGTC 59.895 60.000 3.00 0.00 0.00 4.79
2135 5953 0.617820 ACTAGAGGTCATTGGCCCGT 60.618 55.000 3.00 0.00 0.00 5.28
2136 5954 1.410004 TACTAGAGGTCATTGGCCCG 58.590 55.000 3.00 0.00 0.00 6.13
2137 5955 2.504175 TGTTACTAGAGGTCATTGGCCC 59.496 50.000 3.00 0.00 0.00 5.80
2138 5956 3.906720 TGTTACTAGAGGTCATTGGCC 57.093 47.619 0.00 0.00 0.00 5.36
2139 5957 4.051922 CGATGTTACTAGAGGTCATTGGC 58.948 47.826 0.00 0.00 0.00 4.52
2140 5958 4.621991 CCGATGTTACTAGAGGTCATTGG 58.378 47.826 0.00 5.46 34.90 3.16
2141 5959 4.051922 GCCGATGTTACTAGAGGTCATTG 58.948 47.826 0.00 0.21 0.00 2.82
2142 5960 3.704566 TGCCGATGTTACTAGAGGTCATT 59.295 43.478 0.00 0.00 0.00 2.57
2143 5961 3.068307 GTGCCGATGTTACTAGAGGTCAT 59.932 47.826 0.00 0.00 0.00 3.06
2144 5962 2.426024 GTGCCGATGTTACTAGAGGTCA 59.574 50.000 0.00 0.00 0.00 4.02
2145 5963 2.223758 GGTGCCGATGTTACTAGAGGTC 60.224 54.545 0.00 0.00 0.00 3.85
2146 5964 1.755380 GGTGCCGATGTTACTAGAGGT 59.245 52.381 0.00 0.00 0.00 3.85
2147 5965 1.754803 TGGTGCCGATGTTACTAGAGG 59.245 52.381 0.00 0.00 0.00 3.69
2148 5966 2.799917 GCTGGTGCCGATGTTACTAGAG 60.800 54.545 0.00 0.00 0.00 2.43
2149 5967 1.136305 GCTGGTGCCGATGTTACTAGA 59.864 52.381 0.00 0.00 0.00 2.43
2150 5968 1.137086 AGCTGGTGCCGATGTTACTAG 59.863 52.381 0.00 0.00 40.80 2.57
2151 5969 1.136305 GAGCTGGTGCCGATGTTACTA 59.864 52.381 0.00 0.00 40.80 1.82
2152 5970 0.108138 GAGCTGGTGCCGATGTTACT 60.108 55.000 0.00 0.00 40.80 2.24
2153 5971 1.421410 CGAGCTGGTGCCGATGTTAC 61.421 60.000 0.00 0.00 40.80 2.50
2154 5972 1.153647 CGAGCTGGTGCCGATGTTA 60.154 57.895 0.00 0.00 40.80 2.41
2155 5973 2.434884 CGAGCTGGTGCCGATGTT 60.435 61.111 0.00 0.00 40.80 2.71
2156 5974 3.362399 CTCGAGCTGGTGCCGATGT 62.362 63.158 0.00 0.00 39.64 3.06
2157 5975 2.584418 CTCGAGCTGGTGCCGATG 60.584 66.667 0.00 0.00 39.64 3.84
2158 5976 2.755876 TCTCGAGCTGGTGCCGAT 60.756 61.111 7.81 0.00 39.64 4.18
2159 5977 3.443925 CTCTCGAGCTGGTGCCGA 61.444 66.667 7.81 0.00 40.80 5.54
2169 5987 0.524392 CTAACTGCCGTGCTCTCGAG 60.524 60.000 5.93 5.93 0.00 4.04
2170 5988 1.506718 CTAACTGCCGTGCTCTCGA 59.493 57.895 0.00 0.00 0.00 4.04
2171 5989 1.517257 CCTAACTGCCGTGCTCTCG 60.517 63.158 0.00 0.00 0.00 4.04
2172 5990 0.461961 ATCCTAACTGCCGTGCTCTC 59.538 55.000 0.00 0.00 0.00 3.20
2173 5991 1.776662 TATCCTAACTGCCGTGCTCT 58.223 50.000 0.00 0.00 0.00 4.09
2174 5992 2.610727 GGATATCCTAACTGCCGTGCTC 60.611 54.545 14.97 0.00 0.00 4.26
2175 5993 1.344763 GGATATCCTAACTGCCGTGCT 59.655 52.381 14.97 0.00 0.00 4.40
2176 5994 1.070134 TGGATATCCTAACTGCCGTGC 59.930 52.381 22.35 0.00 36.82 5.34
2177 5995 3.006859 TGATGGATATCCTAACTGCCGTG 59.993 47.826 22.35 0.00 36.82 4.94
2178 5996 3.239449 TGATGGATATCCTAACTGCCGT 58.761 45.455 22.35 0.00 36.82 5.68
2179 5997 3.961480 TGATGGATATCCTAACTGCCG 57.039 47.619 22.35 0.00 36.82 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.