>input_sequence_86960
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-----------------------------------------------------ATGGAGCACTCGTACAGCAGCAACAGC
GGCATCAGCAAC------------------TACGGCAGCGCAAAGGAGAGGAGGCCTCCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCCAGGAACGACGGCGCCGGCGCGGGCGCGGACAAGGGGCCGT
---CAGGCCGCACCAGCTTCGGCGCCTACAATTAA---------------------------------------------
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>chr1A_1_TraesCS1A01G289900
CTCGGACCAAATAGTCAAGGGGCAGCACTGCTCTCAGAAGAGACGGTCACCCGGTCTCTCGCTAGAGA-----TGCTCTT
GGCATCCTGAATTATCCGAGTCGACTGAACAAACTTGTTATAAGGTGTAGAT----------------------------
-----GAATCCATGCAGGCTCGTTTCAGACTCGACGACACGATGGAGGCGTCCGGATGACACCGTGAATTTCTATTCTGC
ATGGGCGAGAATTCGGTCTGGATTGACGACCGGTCAGTGATCTTTGGATGATTCATTCAGAAGTTGTCTTAGGCCTTTCA
CTATGTAAGCCATAATCGGTGCAAAATTTGCTTTTTGACATTTAACACCGATGCCCTACATTGTCCAGCCCGGTGCCAAG
TAAAAAATTCTAGGCATCGATGTTTCTACTTGCTTCGGTGCCAAATTCGGTGAGCCAATAAACTAAGCGCGTCTTGGTCA
TTTCTCATGCGAAGCAACACCCATGACACTGGTCCTTAGGTAAGTTGGGTAGATATATTACTAATTTATATGCATGCAGG
CCCGTGCTGGAGTGGATGCGAAATCTTTCACAATGCGTGACCGGTGTCATAAAAAATTCAACTGCCATCTGACGTATACG
TAACTGGCTTTTAAAAAATGTGGCACCGAGTACATAGTGGAAGGCCTTAAAGATGCCCCCGGCCTTCCCCCTTGCCCTTG
GTGATGA-------ATCACTCCAGTCGTTTTCGTTCTACGGAGCACTCGTGTGGCTACTGGCTAGCGCCGTGTCGGCACA
GACAGCATGGGCCACATCACAGCCCACGAGTGGTCAATTATTTTCC-----CAAGACAAA-TTAACATGTGCGGCAAGGC
GCCGGTATTGACAGA---------GCACAGATGAT-GGTTTGGTTCGCCTATAAATACTTTTCACCTTCCCATGTTCTCT
TCACACACACAC--TCACACAAAAGAAGAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAAAGCA------------
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------------------------------------------------------------AGAAGA--------------
-GGA----------------GGAAGGA-------CAACACAGAAAGCAGAGCCATGGAGCACTCGTACAGCAGCAACAGC
GGCATCAGCAAC------------------TACGGCAGCGCAAAGGAGAGGAGGCCTCCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCCAGGAACGACGGCGCCGGCGCGGGCGCGGACAAGGGGCCGT
---CAGGCCGCACCAGCTTCGGCGCCTACAATTAACTGAAGCTC---TCAAAGACGCCATCGAATGTCTGTCAGATGCAC
TCGCACGGACGCTCCCTTAC------TTTAGATCCACCAGATTAGCTTTTCACTTAGCAG------TAGCTTCATATTGG
----------GTTTTCTTCCCAAGTCTTCTCC---GATTGTACA---------GATTGTACAGATGAATAGAGAGGTTAT
GTGGAATTTCGTGTGCGGTGTACTAGCATCACTTTGTGGTGCCTCC---------TTTTCTTCCCGAACGCTATGATTTG
GCTGTGCGACTGGTTTCAAAAAAAATGATTTGGCTGTGCGTAGAACGCACGGGTGAACAAATACGGACTGAAGGGAATTC
AGAGGCTGGCAGTGCTAGAAAA-----------------------------------TACGCGAAAGATCAATGTAAAAA
ATAGGCACGAGGACGTTTATCCCTTCTTAGAGGTGTTGTTGTGCAAGAAGTCG-ACTTAGTCGCTGGTGTTAATTTGGAC
GATGATTTGAGGCACGCACGTGCGGGGGCACTCAGGTCATTGGTGCTAGCTTTTTATTTTGGCTTCCGATTTACAAAGTT
CTATTTCATTTTTAAAAGTTT-AAATTAAATTTTGTTTTCATATTCATGTTTCTCGTGACCAACGTGTTAG--AATTAGA
TCCATTTTAAATATATTTTGAAGACTTCTAAAAAAGTATGTTAAGTTTCAATGTTGAAATTTAGTACGAGTGACGGGTAA
AAATCAACTATTTTTGTGTCCACGACTGACAGAAAAAATGCTTAAAATTATGTCTTTGAAACTTATGCT-----------
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-------AGGTGTCAGGTGGAGTGTGGATCAGATCAAGGCACTAAGCAGGGAATTTATGCTAGCTGTGAAAAAGAAACAG
AGGTAGGCCCTGAATTTATATATGTTTGCTACCACTACTAGTAGAAGTGTAAATTGGACGTGTGAATCAGGCAAGAGTGT
GAGTATCTCTGAAGCCCCCATGGGGTGGACGGACGGGCCAATGACCTCTAGTAACATCGGCACCAGCTCGAGAGCACGGC
AGTTAGGATATCCATCAA
>chr1A_1
CTCAGACGAAATAGTCAAGGGGCGGCGCTGCTCTCGGAGGAAACGGTCACCCGGTCCCTCGCCAGCCCAGCCTTGCTCTT
GGCATCCTGAATTATCCGAGTCGACTGGACAAACCTAATACTTCCTTCGATTTATATTAATTGTCGATGATTTAGAGGAT
GTGTAGAATCCATGCACACTCGTTTTCAACTCGTTGGCACGATGGAGGCGTCTGGATGACACCGTGAATTTCTATTCTGC
ATGGGCGAGAATGCGGTCTGGACTGACGACCGGTCAGTGATCTTTGGATGATTCATTAAGTTGTCTTCAA----------
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--------------------------------------------------AGATGCCCCCGGCCATCTCCCTTGCCCTTG
GTGATGAACTGATGATCACTCCAGTCGTTTTCGTTCTACGGAGCACTCGTGTGCCTACTGGCTAGTGCCGTGTCGGCACA
TACATCATGGGCCACATCACAGCCCACAAGTGGTCAATTATTTTCC-----CAAGACAAATTTAACATGTGCGGCAAGGC
GCCGGTATTGACAGA---------GCACAGATGAT-GGTTTGGTTCGCCTATAAATACTTTTCACCTTCCCATGTTCTCT
TCACACACACACACTCACACAAAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGA-AGAAAGCA------------
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------------------------------------------------------------AGAAGA--------------
-GGA----------------GGAAGGA-------CAACACAGAAAGCAGAGCCATGGAGCACTCCTATAGCAGCAACAGC
GGCATCAGCAAC------------------TACGGCAGCGCAAAAGAGAGGAGGCCTCCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCATGCGGACCATCAGCAACCTCATGGCGCCCAGGAACGCCGGCGCCGGCGCGG------ACAAGAGAGCGT
---CAGGCCGCACCACCTTCGGCGCCTACAA----CTGAAGCTCCCATCAAAGACGCCGTCGGCTGTCTGTCAGAA-CAC
TCGCACGGACGCCCCTTCCTTCAGAGTTCAGAACCATCAGATTAGCTTTTTACTTG---G------TAGCTTCATACTGG
----------GTTTTCTTCCCAGGTCTTCTCCCCGGATTGTACAGAGTTATGCGATTGTACAGATGAATAGAGAGGTTAT
GTGCAATTTCGTGTGCGGT-------------------------------------------------------------
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>chr1B_648
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----------------------------------------------------------------CTTCAA----------
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--------------------------------------------------ATATGCCCTCGGCCATCTCCCTTGCCCTTG
GTGGTGA-------ATCACTCCAGTCGTTTTCGTTCTACGGAGCACTCGTGTGGCTACTTGCTAGTGCCGTGTCGGCACA
GGCAGCATGGGCCACATCACAGCCCGCAAGTGGTCATTTATTTTCC-----CAAGACAAA-TTAACATGTGCGGCAAGGC
GCCGGTATTGACAGA---------GCACAGATGATGGGTTTGGTTCGCCTATAAATACTTTCCAACTTCCCATGTTCTCT
TCACACACTCACACTCACACTCA---------AGAAGAAGAAGAAGAAGAAGAAGAAGA-----AGCA------------
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------------------------------------------------------------AGAAGA--------------
-GGA----------------GGAAGGA-------CGACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGCTACAGC
GGCATCAGCAAC------------------TACGGCAGCGCAAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGAGGAACGACGGCGCCGGCGCGG------ACAAGAGGGCAT
---CAGGTCGCACCAGCATCGGCGCCTACAA----CTGACGCTGAG------GACGCCATCGAG----TGTCAGATGCAC
TCGCACGGACGCCCGCTTCC------TTCAGACCTGATTAGCT---TTTTTACTTT---G------TAGCTTCATACTGG
ACTAGTACTGTTTTTCTTCCCAAGTCTTCT---CCGATTGTACAGAGTTCTGCGATTGTACAGATGAATAGAGAGGTTAT
ATGCAATTTCGTGTGCAGTGTACT---ATCACTTTGTGATGCACTACTCCTTTTTTTTTCTCCTTGAACGCTATAATATG
GTTGTGCG------------------------------------------------------------------------
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>chr1D_648
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----------------------------------------------------------------CTTCAA----------
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--------------------------------------------------AGATGCCCCCTGCCATCTCCCTTGCCCTTG
GTGATGA-------ATCACTCCAGTCGTTCTCGCTCTATGGAGCACTCGTGTGGCTACTGGCTAGTGCCGTGTTGGCACA
GACATCATAGGCCACATCATAGGCCGCAAGTGGTCAATTATTTTATTTCCACAAGACAAA-TTAACATGTGCGGCAAGGC
ACCGGTATTGACAGA---------GCACAGATGATGGTTTGGC-------------------------------------
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---------------------------------------------------------TCGCCTATAAATGCTTTACACCT
TCCCATCTCCTCTTCACACACAG----------------ACTCACACTCACACATA-AGAAGAAGAGAGAAAGCAAGAAG
AGGA----------------GGAAGGACAACAGTCAACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGC------
---------AACAGCGGCATGAG---CAACTACGGCAGCACAAAGGAGAGGAGGCCGCCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGAGGAACGACGGCGCGGGCGCGG------ACAAGAGGGCAT
CTGCAGGTCGCACCAGCTTCGGCGCCTACAA----CTGAAGCTC------AAGGCGCCATCGAG----TGTCAGATGCAC
TCGCACGGACGCCCCTTTCTTCAGACCTGACTAGTT------T---TTTTTACTTG---GTAGTCCTAGCTTCATACTGG
----------TTTTTGTTCCCAAGTCTTCTCCCCCGATTGTACAGAGTTCTGCGATTGTACAGATGAATTGAGAGGTTAT
GTGCAATTTCGT--------------------------------------------------------------------
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>chr1A_734
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----------------------------------------------------------TGGTTAGTGCCTTGTCGACGCA
AATATCATTGGCCACAGCGCAGCCCACAAGTGGTCGATTATTTCCCC----CAGGACAAA-TTAACATGTGCTGCGAGGC
ACCGGTATTGACAGACAGAGCAGAGCACACATGGTGGTTTTGC-------------------------------------
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---------------------------------------------------------TCGCCTATAAATTCTTTTCGCAT
CCCCATCTTCTCTTCACACACAC----------------ACACTCACACTCACAAGGAGAAGAAGAGCACACAAGAAACG
ACAGGGCAAGAA---GAGGAGGAAGGA-------CAACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGC------
---------AAC------------------TACGGCAGCACAAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGAGGAACGACGGCGCCGGCGCGG------ACAAGAGGGCGT
---CAGGCCGCACCAGCTTCGGCGCCTACAA----CTGAACCTC---TCAAAGACGCCATCGAGTGTCTGTCAGCTTAGC
TTTTCG----------------------------------------TTTTTACTTG---G------TAGCTTCATACTGG
----------GTTTTCTTCCCAAGTCTTCTCCCCGGATTGTACAGAGTTCTGCGATTGTACAGATGAATAGAGAGGTTAT
GTGCAATTTCGCTTGCGGTTTACT---GTCACTTTGCGACGCAGTGCT-CTTTTTTCTTCTTCTTGAACGCTATAATTTG
GCCGTGG--------------------------------GTAGAACGCACCGGTGAACAGATACAGACTGAAGGGAATTT
GGAGGCTGGCAGTGTTAGAAAAATAAGCGAAAGATCAATGCAAAGAAGTGTTAGAAATACGCGAAAGATCAATGCAAAAA
ATAGGCCCGAGGATGTTTATCCCTCCTTAGAAGTGTTGTTGTGCAAGAAGTCTAACTTAGTCATTGGTGTTAATTTGGAC
GAGGATTTGCGGGGCACTCGGTCCC---------------TGGTGCCGGATTTTTTTTTTGGCATCCAATTTTCAAAGTT
TATACATTTAAACAAAAAATTCAAATTAAGTTTTGTTTTCATATTCATGTTTCTTGTGACCAGCGCGCGTTGAAATAAGA
TCCATTTTGAATATATTTTCATGACTTTAAAAA----ATGTTAAGTTTCAATGTT-AAACATAGTATGAGTGACTGATAA
AAAATATAT-TTTTTGTGTCTACAACCAACATATTTTTTAAA-AAAATTATATTTCTGAACCTTGTTGAAACTTGGCATT
TTTAGATGCAAAAATTGTAAGTTTTATTGCTTAAACTTAAATCATTTTGAGGGATTTTCTTTTACTATGGCCTCGTGCGG
GATTCAACCACTTCGCAAATCGTGAGGCAAATCGAGCGGGCAGCAGGCTTTGGCAGGTGAGTGCCCCCCACTAGCGTGCC
CCTACGAATTTCCGTTGTTATTTTTTCGTGTTTTATAGTCTACTTGTTGTATTTGACCTCGTTGCCTTGTATCGTGGTTG
TGTGCATCAAAATGATGCAGGATTCGGGGTTCCAACATCATTTTCAAAGAAGAAGAAGAATGTATATGAAGTTGTAGATG
TTATCATTTTCCTCTATAAATTTAAACAAGTTTATCTTAAGACAAACCAAATAAGTCTTGTAAACCCGACTGAAGGAAAT
ATGATATAGCCTAGCTCCGGCTCCTGAGTTTACTATAGGGAGTTCACACGACACCACCAAAAACTCCATAACTAAGGGCA
ACTCCAACACAGATCACCAAGCCCTTAGATGTCCGAAACGGACGGTCCGGGCACTTGTAGCCATTCAATGCAACTCACTG
TATCTGTTGGGCCAGTCCGGACGTCTAAAATCTCACAAATCATCCTCAAATTAGGGGAGCTTTGGAGGAGTTCGGGAATG
CGCGACCGCTGCCAACTCAGCATCGGATCATACCACGAACCCACTTTTCACTCTTCCTCCTTTTTCTCTTCTCTCTTCAT
TGGATAAGGGGCAAACATTTGATGTATATGATTGAACGCCTTTGCCCATTCGGTTGTCTACGAACATGTCTATGGACATA
TGGTCGATGGTGTTCAATAGGTGATCTGGGGTTGGAGTTGCCCTAACGATCCATGCTGACCGCAACAAGCTTCTTACTCT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGCGGACAGCTCCCCACCGCTTCTTATTATACTCTCGATGA
GAACAGTTACAACATCAGGGAGGAGGGGGAGGCGAAAGGAATACATAGACGCTGTCAAGTAGCAGCCGAACGAGCAAGGT
GCGATCGAATCTTCTCAAGACCCGCCCTATCAAGGCTATCCTTAAACCGGCAGGAGCAGAGGTCAAGATCACTAATAGTT
CTTGTAATCACCTCAATCGGTTTAACATGACCACAAAACATAATGTTCTCAATCTTACTCTACAACAAACTTATTGCTCA
AACCCTGGATCTGAAAACCCCAAGTTAAGCAAGCTACACAGGTCCCTGAAAGTGAGGAATTGAAATCAATGTTCACATAA
TGGAGATAATGATTCATTTATTTATATTTTATACATGCAAAACTTCACTAAAATTAGATGGTAGCTAAACTAACCTAGTT
AAATAACTGAGACGAAATGTAAAGTTACTTTTATCTTAGGATTCAAATCTTTTGGGCACTCCATGGGAATAGTAGGTGTG
GCCCTAGATAAGTACCTGATTTATTTTTTACTAGGAATGTTGCAAAATATATTCGACATCCATGTTTACAGCGACTCAAA
TCAATCGTGCATCCAAGTGGAGAACATCTGCATGCACGTGGAATATTTGCATTGTTACGATATCTGAATGGATATGGTTA
TCACCGTGCCAAAGTGAAAAGGTAAAACCCTGCTTTCACCTTCTTCTTATCTGAAAGACACACACATACTTGATATATAT
TCTCTCTTGTAAAAAAGAGTGAGGATTTTCCATCGACCAGAGTATAATTGGCTAATTGCTATAGGTGAAAAATGTACTAC
AGTAAAAAACAGCTTTCAACTTAAAGAACATTTTTCTGTGAACAAATTCTTCGAAGATATTTCCATGCAAGTCGAGCTCT
CGGCTCATGCATGCATTTATCTATTTTATATACATTTTTGTTTTACAAAGTAAATTAACTAGTTTCTAGGTAAGACCGGC
TCTTATGAGGTGTCATGTGGAGTGTGGATCTGATCAAGGCACTAAGCAGGGAATTTATGCTAGCTGTAAAATAGAAACAA
AGGCAGACCCTG--------------------------------------------------------------------
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>chr1D_735
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-----------------------------------------------------------GGTTAGTGCCTTGTCGACGCA
AATATCATCGGCCACAGCGCAGCCCACAAGTGGTCAATTATTTCCCG----CAGGACAAA-TTAACATGTGCGGCGAGGC
GCCGGTATTGACAGACA-----GAGCACACATGGTGGTTTAGC-------------------------------------
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---------------------------------------------------------TCGCCTATAAATTCTTTTCACCT
TCCCATCTTCTCTTCACACACAC----------------AGACACACTCACTCACA-AGGAGAAGA--------------
-AGAGCAAACAAGAAGAGGAGGAAAGA-------CAACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGC------
---------AACAGCGGCATCACTACCAACTACGGCGGCGCAAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGAGGAACGACGGCGCGGGCGCGG------GCAAAGGGGCGT
---CAGGCTGCACTAGCTTCGGCGCCTACAA----CTGAACCTC---TCAAAGACGCCATCGAGTGTCTGTCAGATTAGC
TTTT----------------------------------------------TACCTG---G------TAGCTTCATACTGG
----------TTTTTCTTCCCAAGTCTTCTTCCCCGATTGTACAGAGTTCTGTGATTGTACAGATGAATAGAGAGGTTAT
GTGGAATTTCGTGTGCGGTGTACT---CTCACTTTGTGATGCAGTGCT-CTTTTTTCTTCTTCTTGAACGCTATTGTTTG
GCTGTGCG------------------------------------------------------------------------
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>chr1D_961
CTTATGAGGTGTCAGGTGGAGTGTGGATCAGATCAAGGCACTAAGCAGGGAATTTATGCTACCCCATCTGTAAAAAAGTA
ACAGAGGTAGGCCCTGAATTATCGCTGAATTTATTTGCTATACTACTACCAGAAGTGTATAAACTGCACGTGTTGATCAG
GGAAGGGTTTTGAGTACCTCTGAAGCCTCCATGGGATGAACGGACCAATGACCGCCGGTAACATGGGCACCAGCTCGAGC
CTACGGCAGGTAGGAAATCAATCAACGCACCAGCATATTTGCATATGCTAAAGCTAGCTCCCCTGATGCTCCGGTGTCTT
CTCTTTCCAGATAGTACAAGCAGTCTACGAAATTTCATACCGGAGTAGATTGGGCACCCAAGTTTGAGATCTCAAGATGT
CAGATATTTTTAAATTTTTCTAGTATTTTCTGAATTTAATTTTCGTATAGGGTGCTCGTGTGTATTTCCCCAGTCAGTTT
CGTCTCTTTTTCGCTATATACCACTGACAAGATAATGCAACTGAAAATTGAAAGCGCCATGCATCGTCTCGTGTAGTAAT
CGGTGGAGTATCATGATATCACGTGACTGTATGCAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTACACTACATAGCAGATCAAAACCAAGAAAAAAGAAAAGGCCCACCATCGAAGAGAAAAGGGGCCAGGGTCCATT
GGTCGTGGGACTTGCGGCTGCAGCAGCACGTACACAACCGCTTTGATTCTCTGCTGCTGCGATCGTCACGATTTTAGCGC
CGCCAATCCTCCTAACTGTCCGCGAAGGAGAGGAGCACGGCAAATGTGCTCCAACCTCCCAGCGAGAGTCACAAAAGAGA
CTCTTTTTTTTGCGCATAGAGTCACAAAAGAGACTGATCCAAATCCATGATAGCTGGTAGCTGCACCTGCACGGTTAGTC
CCTTCTTCATCTCTTGATCTTCAATTTGTTCAAATTTGTGTGGTTGTGCCATACAGAATCTACAAACATCAGACGTATTG
GCTGCCCTTATATTTTTATACTCGTGTATAGATAAGACGAGGAAGAGAAACTGAAAAATGTTTGCCAAGAGCATTTGCGT
CCAACTGTCCAACCCTACAGACCCCAATCGATCATTCCTCTCGGCCAGTAAGGGGATTATCAAAAGCACCACCACCATGA
GCGACCACGGAGACGACGATGCACGCCATTCTCAATAATTAACCTTAGCTTCCAATCTCTGTTTTTTGCTGGTTAATATG
AAGATAATTAATTGATTGACATGAAAATCAGAGTTGGTCAATTCAACATAGTACCGTCGGCCAAATTATGTAATATAACT
ATTTTAGATACTCTTTTGTCAAAGATGAATACTTTCATAATAATTTTGTAGTCTTTAGCTGTTTACACTAACGAAAATAC
GAGTCCGGGCTTATGTTTCTTTGCACACTTTAAACTTATGAGTGATCATCCGATGCCCATCAGTCTATAAGAGCTCTAGT
CTGAAACTCGCCCCCCCTATGCCAAATTCCTGGCTCCGTCCCTGACTGTATGTATGTATTATCAGAATTAATTAAGAAGA
GACGCGCAGTCGTCGGGTCAGGATAAGGTCACGGCCGGCGGCTGGTCGTGCCCGGCCGATCGGTCGGTGGAGGTCAGGTG
TCCATGCGCGAGCCGCCGGTGGCGGCCTGGCTGACACCTCAAGCTCAAGCGAGCATGCGGAATAGAGATGCACTGAACCT
TGGAGCTAGCTACAAACAAAGCAGAGTTAGCCGTCGCGGTCACGTGCATGCATCTCTCCTAGGACGGAAACAGTCAATGG
GCAGCACTCCGGCACGTGCGGCTTAATCTTAATCCACGCTCGGCTCTGCTCTTCCCTGAATTATCTGGTGGTTCGTTCAG
TTCAGTTCAACGAGAGGTAAGGTAACGGAGCAAACGTGAGGGTAAATTGATCAAATCTTCTTATCTTTTTTCAACTCGAA
AGACGCTATGGAGACGTCCAGATGACACTCTAAATATCTACTTTTCATTAGCTCTGGATTGACTGGTCAGAAGTCTCTGG
ATGCTTCAAAGATGCACCCTGCCATCTCCCTTAATATTCAATCATTCCAGCCGTTTTTGGGAGCAAGCACAGTGGCACTC
TTGTGGTTAAGGGCATAAGTTCCCCTGTTAGTGCCTTCACTGTACAAACAAGATGGCCCGGAAGAGGTCAAAATATTCCG
CCAAAGAAATTAACATGCGTGGCGAGGCACCAAAATCGACAGAGCACAGGGTTTAGTTCGCCTATAAATACTTTTCACCG
TCTCATGTCCTCTTCACATTAAGCAAGGAAGCAAGCACAACACACACACACTCAGA-AGAAGAAGA--------------
-AGA----------------AGAAGGA-------CAACACAGGTGGTGGAGCCATGGAGCACTCCTACAGCAGC------
---------AACAGCGGCATCAG---CAACTACGGCAGCGCGAAGGAGAAGAGGCCCCCGCTGAAGAGGGGGCAGCTGAA
GCGGCAGATCGTCAGGACCATCAGCAACCTCGTGCTGCCAAGGAGCGACGGCATGGCCGCGG------AGAAGCGAGCAT
---CGGGTCGCACCAGCTTCGGCGCCTACAA-------------------------------------------------
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>SNPs
---S---S---------------S--------------S--S--------------------S---SS------------
-------------------------------------S----SSS-SSSS------------------------------
----------------SS--------SS-----SS-S-------------------------------------------
------------S---------S-------------------------------------SS--SS--S-SS-SSS-SSS
--S-S-SSSSSSSSSS-SSSSSSSSSSSSSSS---SSSSSSSS-SS-SSSSS-S-SSS--SSS-SS--SS-SSSSSSSSS
S-S-S-S--S--SSSS-SSS-SS-SS-SSS--SS-SSSSSSSSSS-SSS-S-S--SSS-SSSSSSSS-S-SSS-SS--SS
SS----S-SSSSSSS-SSSS---SSSSSSS-S-SS-SSSSSSSSSSSSSS-S-SSSSSSSSS-SSS-S-SSSSSS-S-SS
-SSSS-SSSSSSSS---SSS-SS-SSS-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--S------------
-----------------------------------------------------------------S--------------
---------------------------S----------------------------------------------------
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------------------------------S----------------------------S--------------------
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----------------------------------------------------------------S---------------
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--------------------------------------------------------------SSSSSS--------S---
-------------------------------SSSS----------------------------S----------------
------------S-----S---------S---S---S-------------S----SSSS-----------------S---
--------------------------------------------------------------------------------
------------------------SSS-----------S---SSSS-----------------SS---------S-----
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--------S----S--------------S
S-------------S-----------------------------------------------------------S-----
------S------S----------S------S--------------------S---------SS----------------
--S------S--SS-S-S--SS-SSSSSSSSSSSSSSSSS------SS-S-----S-------S---S----S-------
SSSSSSSS-SSSS----SS----------S------------------------S-------S--S-SSSS-----S---
--------S----------S-S-----SS----SSSS------------------S---SS-----S-------S-S---
---SS-SS-S----------S--S--SS---S-SSSSS-SSSS--------S-S-S----S---S-SSS-----------
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---------------S--------------S------------------------------------S---S-------S
---S--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_480
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------------------------------------------------------------AACTAAGCGCGTCTTGGTCA
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>reverse_3159
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--------------------------------------GTGCCTCCTTTTCTTCCCGA----------------------
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------------------
