Multiple sequence alignment - TraesCS1A01G289800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G289800 chr1A 100.000 2741 0 0 1 2741 486749662 486752402 0.000000e+00 5062.0
1 TraesCS1A01G289800 chr1A 82.674 1062 113 48 1722 2741 486938394 486939426 0.000000e+00 876.0
2 TraesCS1A01G289800 chr1A 83.104 509 49 12 963 1444 486896607 486897105 1.950000e-116 429.0
3 TraesCS1A01G289800 chr1A 82.171 516 46 14 963 1444 486816641 486817144 4.250000e-108 401.0
4 TraesCS1A01G289800 chr1A 85.470 351 40 5 128 467 508209999 508209649 3.360000e-94 355.0
5 TraesCS1A01G289800 chr1A 84.163 221 11 10 1457 1654 486897157 486897376 2.790000e-45 193.0
6 TraesCS1A01G289800 chr1A 84.422 199 28 3 1247 1444 486953485 486953681 2.790000e-45 193.0
7 TraesCS1A01G289800 chr1A 76.499 417 52 27 137 542 397736562 397736181 4.660000e-43 185.0
8 TraesCS1A01G289800 chr1A 83.471 121 5 5 1467 1584 486817204 486817312 6.250000e-17 99.0
9 TraesCS1A01G289800 chr1D 86.850 1346 70 21 620 1912 386949225 386950516 0.000000e+00 1406.0
10 TraesCS1A01G289800 chr1D 91.702 711 37 12 2039 2741 386950530 386951226 0.000000e+00 966.0
11 TraesCS1A01G289800 chr1D 80.553 1337 167 43 1468 2736 387060420 387061731 0.000000e+00 942.0
12 TraesCS1A01G289800 chr1D 81.764 499 48 14 963 1438 387059879 387060357 7.160000e-101 377.0
13 TraesCS1A01G289800 chr1D 86.441 354 34 8 126 467 102156660 102156309 2.580000e-100 375.0
14 TraesCS1A01G289800 chr1D 81.336 434 43 19 128 551 464256000 464256405 4.400000e-83 318.0
15 TraesCS1A01G289800 chr1D 87.283 173 22 0 1247 1419 387193761 387193933 5.990000e-47 198.0
16 TraesCS1A01G289800 chr1D 91.150 113 8 2 617 727 387059258 387059370 4.730000e-33 152.0
17 TraesCS1A01G289800 chr1B 85.980 1127 67 26 620 1719 520373708 520374770 0.000000e+00 1122.0
18 TraesCS1A01G289800 chr1B 81.381 811 73 33 967 1722 520390355 520391142 8.450000e-165 590.0
19 TraesCS1A01G289800 chr1B 82.701 659 87 13 2097 2741 520402148 520402793 6.630000e-156 560.0
20 TraesCS1A01G289800 chr1B 83.142 261 24 13 1840 2085 520401636 520401891 1.280000e-53 220.0
21 TraesCS1A01G289800 chr1B 81.919 271 34 12 620 889 520389943 520390199 5.940000e-52 215.0
22 TraesCS1A01G289800 chr1B 87.006 177 23 0 1247 1423 520468954 520469130 1.660000e-47 200.0
23 TraesCS1A01G289800 chr1B 89.474 76 5 2 478 551 489633600 489633674 2.910000e-15 93.5
24 TraesCS1A01G289800 chr6B 84.091 484 52 21 1843 2308 130326789 130327265 6.970000e-121 444.0
25 TraesCS1A01G289800 chr6B 80.180 222 37 6 2097 2316 535390557 535390341 2.830000e-35 159.0
26 TraesCS1A01G289800 chr3B 88.304 342 35 5 128 467 647459082 647458744 3.290000e-109 405.0
27 TraesCS1A01G289800 chr3D 86.364 352 35 7 128 467 373599404 373599754 3.330000e-99 372.0
28 TraesCS1A01G289800 chr3D 77.801 473 81 18 1853 2307 387771427 387771893 1.250000e-68 270.0
29 TraesCS1A01G289800 chr2D 86.364 352 34 8 128 467 617045059 617044710 3.330000e-99 372.0
30 TraesCS1A01G289800 chr6A 85.920 348 38 8 128 467 53063431 53063775 7.220000e-96 361.0
31 TraesCS1A01G289800 chr5D 85.714 350 39 7 127 467 495366124 495365777 2.600000e-95 359.0
32 TraesCS1A01G289800 chr3A 85.714 350 39 6 127 467 125212343 125211996 2.600000e-95 359.0
33 TraesCS1A01G289800 chr3A 80.531 452 70 15 1843 2280 382349826 382350273 5.660000e-87 331.0
34 TraesCS1A01G289800 chr3A 78.876 445 68 23 1846 2280 359059761 359059333 7.480000e-71 278.0
35 TraesCS1A01G289800 chr3A 78.589 411 64 17 1856 2250 11836814 11837216 1.630000e-62 250.0
36 TraesCS1A01G289800 chr4A 85.552 353 37 7 128 467 503613498 503613849 9.330000e-95 357.0
37 TraesCS1A01G289800 chr4B 80.705 482 64 20 1843 2307 588909130 588908661 5.620000e-92 348.0
38 TraesCS1A01G289800 chr6D 82.448 433 41 17 128 551 356800341 356800747 2.020000e-91 346.0
39 TraesCS1A01G289800 chr6D 81.068 206 12 13 346 551 68076208 68076030 3.680000e-29 139.0
40 TraesCS1A01G289800 chrUn 80.042 481 72 20 1843 2304 65974115 65973640 4.370000e-88 335.0
41 TraesCS1A01G289800 chr7B 80.000 475 65 19 1847 2306 504961797 504961338 9.470000e-85 324.0
42 TraesCS1A01G289800 chr7B 79.075 454 73 17 1843 2280 684153532 684153979 2.670000e-75 292.0
43 TraesCS1A01G289800 chr4D 81.567 434 42 19 128 551 449742476 449742881 9.470000e-85 324.0
44 TraesCS1A01G289800 chr5B 95.588 68 3 0 484 551 219124666 219124599 2.890000e-20 110.0
45 TraesCS1A01G289800 chr2B 94.203 69 2 2 483 551 42758556 42758622 1.340000e-18 104.0
46 TraesCS1A01G289800 chr2B 94.203 69 2 2 483 551 42826561 42826627 1.340000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G289800 chr1A 486749662 486752402 2740 False 5062.000000 5062 100.0000 1 2741 1 chr1A.!!$F1 2740
1 TraesCS1A01G289800 chr1A 486938394 486939426 1032 False 876.000000 876 82.6740 1722 2741 1 chr1A.!!$F2 1019
2 TraesCS1A01G289800 chr1A 486896607 486897376 769 False 311.000000 429 83.6335 963 1654 2 chr1A.!!$F5 691
3 TraesCS1A01G289800 chr1A 486816641 486817312 671 False 250.000000 401 82.8210 963 1584 2 chr1A.!!$F4 621
4 TraesCS1A01G289800 chr1D 386949225 386951226 2001 False 1186.000000 1406 89.2760 620 2741 2 chr1D.!!$F3 2121
5 TraesCS1A01G289800 chr1D 387059258 387061731 2473 False 490.333333 942 84.4890 617 2736 3 chr1D.!!$F4 2119
6 TraesCS1A01G289800 chr1B 520373708 520374770 1062 False 1122.000000 1122 85.9800 620 1719 1 chr1B.!!$F2 1099
7 TraesCS1A01G289800 chr1B 520389943 520391142 1199 False 402.500000 590 81.6500 620 1722 2 chr1B.!!$F4 1102
8 TraesCS1A01G289800 chr1B 520401636 520402793 1157 False 390.000000 560 82.9215 1840 2741 2 chr1B.!!$F5 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.039527 AAACCGGAATTGCTTCGTGC 60.040 50.0 9.46 0.0 43.25 5.34 F
1075 1425 0.036765 GGCACCGGTATTGACAGACA 60.037 55.0 6.87 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1187 1576 0.108424 CTCCTCTTCTTGCCCTGTCG 60.108 60.0 0.0 0.00 0.00 4.35 R
2221 3100 0.179215 GCCTCACGATTTGCGAAGTG 60.179 55.0 0.0 0.57 44.57 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.685302 CAAACCGGAATTGCTTCGTG 58.315 50.000 9.46 0.00 31.75 4.35
20 21 0.039527 AAACCGGAATTGCTTCGTGC 60.040 50.000 9.46 0.00 43.25 5.34
21 22 1.862602 AACCGGAATTGCTTCGTGCC 61.863 55.000 9.46 0.00 42.00 5.01
22 23 2.331893 CCGGAATTGCTTCGTGCCA 61.332 57.895 0.00 0.00 42.00 4.92
23 24 1.656818 CCGGAATTGCTTCGTGCCAT 61.657 55.000 0.00 0.00 42.00 4.40
24 25 1.013596 CGGAATTGCTTCGTGCCATA 58.986 50.000 0.00 0.00 42.00 2.74
25 26 1.268032 CGGAATTGCTTCGTGCCATAC 60.268 52.381 0.00 0.00 42.00 2.39
26 27 1.742831 GGAATTGCTTCGTGCCATACA 59.257 47.619 0.00 0.00 42.00 2.29
27 28 2.358898 GGAATTGCTTCGTGCCATACAT 59.641 45.455 0.00 0.00 42.00 2.29
28 29 3.563808 GGAATTGCTTCGTGCCATACATA 59.436 43.478 0.00 0.00 42.00 2.29
29 30 4.216257 GGAATTGCTTCGTGCCATACATAT 59.784 41.667 0.00 0.00 42.00 1.78
30 31 4.754372 ATTGCTTCGTGCCATACATATG 57.246 40.909 0.00 0.00 42.00 1.78
31 32 3.467374 TGCTTCGTGCCATACATATGA 57.533 42.857 10.38 0.00 42.00 2.15
32 33 3.130633 TGCTTCGTGCCATACATATGAC 58.869 45.455 10.38 0.00 42.00 3.06
33 34 3.130633 GCTTCGTGCCATACATATGACA 58.869 45.455 10.38 0.00 35.75 3.58
34 35 3.059597 GCTTCGTGCCATACATATGACAC 60.060 47.826 10.38 7.95 41.68 3.67
35 36 4.371786 CTTCGTGCCATACATATGACACT 58.628 43.478 10.38 0.00 42.53 3.55
36 37 4.400529 TCGTGCCATACATATGACACTT 57.599 40.909 10.38 0.00 42.53 3.16
37 38 5.523438 TCGTGCCATACATATGACACTTA 57.477 39.130 10.38 2.77 42.53 2.24
38 39 6.096673 TCGTGCCATACATATGACACTTAT 57.903 37.500 10.38 0.00 42.53 1.73
39 40 5.925969 TCGTGCCATACATATGACACTTATG 59.074 40.000 10.38 6.52 42.53 1.90
40 41 5.925969 CGTGCCATACATATGACACTTATGA 59.074 40.000 10.38 0.00 42.53 2.15
41 42 6.089954 CGTGCCATACATATGACACTTATGAG 59.910 42.308 10.38 2.93 42.53 2.90
42 43 7.154656 GTGCCATACATATGACACTTATGAGA 58.845 38.462 10.38 0.00 41.80 3.27
43 44 7.330454 GTGCCATACATATGACACTTATGAGAG 59.670 40.741 10.38 0.00 41.80 3.20
44 45 7.015584 TGCCATACATATGACACTTATGAGAGT 59.984 37.037 10.38 0.00 35.75 3.24
45 46 7.543868 GCCATACATATGACACTTATGAGAGTC 59.456 40.741 10.38 7.93 41.93 3.36
87 88 5.623169 AGTACTCCTACTACAGTAGCATCC 58.377 45.833 7.57 0.00 44.97 3.51
88 89 3.834938 ACTCCTACTACAGTAGCATCCC 58.165 50.000 7.57 0.00 44.97 3.85
89 90 3.158676 CTCCTACTACAGTAGCATCCCC 58.841 54.545 7.57 0.00 44.97 4.81
90 91 2.158355 TCCTACTACAGTAGCATCCCCC 60.158 54.545 7.57 0.00 44.97 5.40
91 92 2.425829 CCTACTACAGTAGCATCCCCCA 60.426 54.545 7.57 0.00 44.97 4.96
92 93 2.263895 ACTACAGTAGCATCCCCCAA 57.736 50.000 7.57 0.00 0.00 4.12
93 94 2.776665 ACTACAGTAGCATCCCCCAAT 58.223 47.619 7.57 0.00 0.00 3.16
94 95 3.936461 ACTACAGTAGCATCCCCCAATA 58.064 45.455 7.57 0.00 0.00 1.90
95 96 4.303794 ACTACAGTAGCATCCCCCAATAA 58.696 43.478 7.57 0.00 0.00 1.40
96 97 3.577805 ACAGTAGCATCCCCCAATAAC 57.422 47.619 0.00 0.00 0.00 1.89
97 98 2.849943 ACAGTAGCATCCCCCAATAACA 59.150 45.455 0.00 0.00 0.00 2.41
98 99 3.268334 ACAGTAGCATCCCCCAATAACAA 59.732 43.478 0.00 0.00 0.00 2.83
99 100 4.264172 ACAGTAGCATCCCCCAATAACAAA 60.264 41.667 0.00 0.00 0.00 2.83
100 101 4.895297 CAGTAGCATCCCCCAATAACAAAT 59.105 41.667 0.00 0.00 0.00 2.32
101 102 5.363580 CAGTAGCATCCCCCAATAACAAATT 59.636 40.000 0.00 0.00 0.00 1.82
102 103 4.758773 AGCATCCCCCAATAACAAATTG 57.241 40.909 0.00 0.00 0.00 2.32
103 104 4.360889 AGCATCCCCCAATAACAAATTGA 58.639 39.130 0.00 0.00 0.00 2.57
104 105 4.406649 AGCATCCCCCAATAACAAATTGAG 59.593 41.667 0.00 0.00 0.00 3.02
105 106 4.162131 GCATCCCCCAATAACAAATTGAGT 59.838 41.667 0.00 0.00 0.00 3.41
106 107 5.663456 CATCCCCCAATAACAAATTGAGTG 58.337 41.667 0.00 0.00 0.00 3.51
107 108 4.746466 TCCCCCAATAACAAATTGAGTGT 58.254 39.130 0.00 0.00 0.00 3.55
108 109 5.893500 TCCCCCAATAACAAATTGAGTGTA 58.106 37.500 0.00 0.00 0.00 2.90
109 110 6.315714 TCCCCCAATAACAAATTGAGTGTAA 58.684 36.000 0.00 0.00 0.00 2.41
110 111 6.957020 TCCCCCAATAACAAATTGAGTGTAAT 59.043 34.615 0.00 0.00 0.00 1.89
111 112 7.123547 TCCCCCAATAACAAATTGAGTGTAATC 59.876 37.037 0.00 0.00 0.00 1.75
112 113 7.093552 CCCCCAATAACAAATTGAGTGTAATCA 60.094 37.037 0.00 0.00 0.00 2.57
113 114 8.310382 CCCCAATAACAAATTGAGTGTAATCAA 58.690 33.333 0.00 0.00 43.04 2.57
118 119 9.793252 ATAACAAATTGAGTGTAATCAATGCTC 57.207 29.630 8.14 0.00 46.64 4.26
119 120 6.624423 ACAAATTGAGTGTAATCAATGCTCC 58.376 36.000 8.14 0.00 46.64 4.70
120 121 5.841957 AATTGAGTGTAATCAATGCTCCC 57.158 39.130 8.14 0.00 46.64 4.30
121 122 3.281727 TGAGTGTAATCAATGCTCCCC 57.718 47.619 0.00 0.00 0.00 4.81
122 123 2.575735 TGAGTGTAATCAATGCTCCCCA 59.424 45.455 0.00 0.00 0.00 4.96
123 124 2.945668 GAGTGTAATCAATGCTCCCCAC 59.054 50.000 0.00 0.00 0.00 4.61
124 125 2.308570 AGTGTAATCAATGCTCCCCACA 59.691 45.455 0.00 0.00 0.00 4.17
125 126 3.053395 AGTGTAATCAATGCTCCCCACAT 60.053 43.478 0.00 0.00 0.00 3.21
126 127 3.701040 GTGTAATCAATGCTCCCCACATT 59.299 43.478 0.00 0.00 38.25 2.71
132 133 2.610438 ATGCTCCCCACATTGAAAGT 57.390 45.000 0.00 0.00 0.00 2.66
133 134 3.737559 ATGCTCCCCACATTGAAAGTA 57.262 42.857 0.00 0.00 0.00 2.24
134 135 3.517296 TGCTCCCCACATTGAAAGTAA 57.483 42.857 0.00 0.00 0.00 2.24
135 136 3.153919 TGCTCCCCACATTGAAAGTAAC 58.846 45.455 0.00 0.00 0.00 2.50
136 137 3.181434 TGCTCCCCACATTGAAAGTAACT 60.181 43.478 0.00 0.00 0.00 2.24
137 138 3.826729 GCTCCCCACATTGAAAGTAACTT 59.173 43.478 0.00 0.00 0.00 2.66
138 139 4.280929 GCTCCCCACATTGAAAGTAACTTT 59.719 41.667 0.00 0.00 36.29 2.66
139 140 5.564848 GCTCCCCACATTGAAAGTAACTTTC 60.565 44.000 0.00 0.00 46.88 2.62
140 141 5.701224 TCCCCACATTGAAAGTAACTTTCT 58.299 37.500 1.67 0.00 46.84 2.52
141 142 6.843752 TCCCCACATTGAAAGTAACTTTCTA 58.156 36.000 1.67 0.00 46.84 2.10
142 143 7.466804 TCCCCACATTGAAAGTAACTTTCTAT 58.533 34.615 1.67 0.00 46.84 1.98
143 144 8.607713 TCCCCACATTGAAAGTAACTTTCTATA 58.392 33.333 1.67 0.00 46.84 1.31
144 145 8.674607 CCCCACATTGAAAGTAACTTTCTATAC 58.325 37.037 1.67 0.00 46.84 1.47
145 146 8.674607 CCCACATTGAAAGTAACTTTCTATACC 58.325 37.037 1.67 0.00 46.84 2.73
146 147 9.449719 CCACATTGAAAGTAACTTTCTATACCT 57.550 33.333 1.67 0.00 46.84 3.08
150 151 8.773404 TTGAAAGTAACTTTCTATACCTGAGC 57.227 34.615 1.67 0.00 46.84 4.26
151 152 8.135382 TGAAAGTAACTTTCTATACCTGAGCT 57.865 34.615 1.67 0.00 46.84 4.09
152 153 8.251721 TGAAAGTAACTTTCTATACCTGAGCTC 58.748 37.037 6.82 6.82 46.84 4.09
153 154 7.719871 AAGTAACTTTCTATACCTGAGCTCA 57.280 36.000 17.19 17.19 0.00 4.26
154 155 7.906199 AGTAACTTTCTATACCTGAGCTCAT 57.094 36.000 18.63 5.89 0.00 2.90
155 156 8.998277 AGTAACTTTCTATACCTGAGCTCATA 57.002 34.615 18.63 8.29 0.00 2.15
156 157 9.594936 AGTAACTTTCTATACCTGAGCTCATAT 57.405 33.333 18.63 15.29 0.00 1.78
157 158 9.632807 GTAACTTTCTATACCTGAGCTCATATG 57.367 37.037 18.63 11.44 0.00 1.78
158 159 6.696411 ACTTTCTATACCTGAGCTCATATGC 58.304 40.000 18.63 0.00 0.00 3.14
166 167 3.285838 AGCTCATATGCTCGTGCTG 57.714 52.632 11.19 0.95 39.34 4.41
167 168 0.463204 AGCTCATATGCTCGTGCTGT 59.537 50.000 11.19 2.34 39.34 4.40
168 169 0.580578 GCTCATATGCTCGTGCTGTG 59.419 55.000 11.19 6.94 40.48 3.66
169 170 1.803998 GCTCATATGCTCGTGCTGTGA 60.804 52.381 11.19 10.51 40.48 3.58
170 171 2.543641 CTCATATGCTCGTGCTGTGAA 58.456 47.619 11.19 0.00 40.48 3.18
171 172 2.270923 TCATATGCTCGTGCTGTGAAC 58.729 47.619 11.19 0.00 40.48 3.18
172 173 2.001872 CATATGCTCGTGCTGTGAACA 58.998 47.619 11.19 0.00 40.48 3.18
173 174 1.713597 TATGCTCGTGCTGTGAACAG 58.286 50.000 11.19 6.08 46.40 3.16
174 175 0.250038 ATGCTCGTGCTGTGAACAGT 60.250 50.000 11.19 0.00 45.45 3.55
175 176 0.387565 TGCTCGTGCTGTGAACAGTA 59.612 50.000 11.19 4.74 45.45 2.74
176 177 1.202475 TGCTCGTGCTGTGAACAGTAA 60.202 47.619 11.19 0.00 45.45 2.24
177 178 1.864711 GCTCGTGCTGTGAACAGTAAA 59.135 47.619 11.87 0.00 45.45 2.01
178 179 2.286833 GCTCGTGCTGTGAACAGTAAAA 59.713 45.455 11.87 0.00 45.45 1.52
179 180 3.058914 GCTCGTGCTGTGAACAGTAAAAT 60.059 43.478 11.87 0.00 45.45 1.82
180 181 4.151689 GCTCGTGCTGTGAACAGTAAAATA 59.848 41.667 11.87 0.00 45.45 1.40
181 182 5.333798 GCTCGTGCTGTGAACAGTAAAATAA 60.334 40.000 11.87 0.00 45.45 1.40
182 183 6.606234 TCGTGCTGTGAACAGTAAAATAAA 57.394 33.333 11.87 0.00 45.45 1.40
183 184 7.197071 TCGTGCTGTGAACAGTAAAATAAAT 57.803 32.000 11.87 0.00 45.45 1.40
184 185 8.312896 TCGTGCTGTGAACAGTAAAATAAATA 57.687 30.769 11.87 0.00 45.45 1.40
185 186 8.775527 TCGTGCTGTGAACAGTAAAATAAATAA 58.224 29.630 11.87 0.00 45.45 1.40
186 187 9.388346 CGTGCTGTGAACAGTAAAATAAATAAA 57.612 29.630 11.87 0.00 45.45 1.40
228 229 7.846644 AAGATTTTGACATTCTTTTGTTGCA 57.153 28.000 0.00 0.00 0.00 4.08
229 230 8.441312 AAGATTTTGACATTCTTTTGTTGCAT 57.559 26.923 0.00 0.00 0.00 3.96
230 231 9.545105 AAGATTTTGACATTCTTTTGTTGCATA 57.455 25.926 0.00 0.00 0.00 3.14
231 232 8.981647 AGATTTTGACATTCTTTTGTTGCATAC 58.018 29.630 0.00 0.00 0.00 2.39
232 233 8.891671 ATTTTGACATTCTTTTGTTGCATACT 57.108 26.923 0.00 0.00 0.00 2.12
233 234 8.715191 TTTTGACATTCTTTTGTTGCATACTT 57.285 26.923 0.00 0.00 0.00 2.24
234 235 8.715191 TTTGACATTCTTTTGTTGCATACTTT 57.285 26.923 0.00 0.00 0.00 2.66
235 236 9.809096 TTTGACATTCTTTTGTTGCATACTTTA 57.191 25.926 0.00 0.00 0.00 1.85
236 237 9.809096 TTGACATTCTTTTGTTGCATACTTTAA 57.191 25.926 0.00 0.00 0.00 1.52
237 238 9.809096 TGACATTCTTTTGTTGCATACTTTAAA 57.191 25.926 0.00 0.00 0.00 1.52
257 258 4.959596 AAAAATGTTTGTTGTGCATGCA 57.040 31.818 18.46 18.46 0.00 3.96
258 259 4.959596 AAAATGTTTGTTGTGCATGCAA 57.040 31.818 24.58 10.26 0.00 4.08
259 260 4.959596 AAATGTTTGTTGTGCATGCAAA 57.040 31.818 24.58 15.92 0.00 3.68
260 261 4.959596 AATGTTTGTTGTGCATGCAAAA 57.040 31.818 24.58 21.90 34.47 2.44
261 262 5.502153 AATGTTTGTTGTGCATGCAAAAT 57.498 30.435 25.58 6.44 34.47 1.82
262 263 4.959596 TGTTTGTTGTGCATGCAAAATT 57.040 31.818 25.58 0.00 34.47 1.82
263 264 5.306532 TGTTTGTTGTGCATGCAAAATTT 57.693 30.435 25.58 0.00 34.47 1.82
264 265 5.330295 TGTTTGTTGTGCATGCAAAATTTC 58.670 33.333 25.58 13.82 34.47 2.17
265 266 5.106436 TGTTTGTTGTGCATGCAAAATTTCA 60.106 32.000 25.58 16.21 34.47 2.69
266 267 5.556355 TTGTTGTGCATGCAAAATTTCAA 57.444 30.435 25.58 20.65 0.00 2.69
267 268 5.556355 TGTTGTGCATGCAAAATTTCAAA 57.444 30.435 25.58 10.67 0.00 2.69
268 269 5.946298 TGTTGTGCATGCAAAATTTCAAAA 58.054 29.167 25.58 14.81 0.00 2.44
269 270 5.798934 TGTTGTGCATGCAAAATTTCAAAAC 59.201 32.000 25.58 11.83 0.00 2.43
270 271 5.556355 TGTGCATGCAAAATTTCAAAACA 57.444 30.435 24.58 8.60 0.00 2.83
271 272 5.946298 TGTGCATGCAAAATTTCAAAACAA 58.054 29.167 24.58 0.00 0.00 2.83
272 273 6.384224 TGTGCATGCAAAATTTCAAAACAAA 58.616 28.000 24.58 0.00 0.00 2.83
273 274 6.864685 TGTGCATGCAAAATTTCAAAACAAAA 59.135 26.923 24.58 0.00 0.00 2.44
274 275 7.544566 TGTGCATGCAAAATTTCAAAACAAAAT 59.455 25.926 24.58 0.00 0.00 1.82
275 276 7.841758 GTGCATGCAAAATTTCAAAACAAAATG 59.158 29.630 24.58 0.00 0.00 2.32
276 277 7.758076 TGCATGCAAAATTTCAAAACAAAATGA 59.242 25.926 20.30 0.00 0.00 2.57
277 278 8.051329 GCATGCAAAATTTCAAAACAAAATGAC 58.949 29.630 14.21 0.00 0.00 3.06
278 279 9.073368 CATGCAAAATTTCAAAACAAAATGACA 57.927 25.926 0.00 0.00 0.00 3.58
279 280 9.804758 ATGCAAAATTTCAAAACAAAATGACAT 57.195 22.222 0.00 0.00 0.00 3.06
280 281 9.635520 TGCAAAATTTCAAAACAAAATGACATT 57.364 22.222 0.00 0.00 29.63 2.71
281 282 9.888637 GCAAAATTTCAAAACAAAATGACATTG 57.111 25.926 0.34 0.00 29.14 2.82
284 285 9.570488 AAATTTCAAAACAAAATGACATTGGTG 57.430 25.926 0.34 6.06 29.14 4.17
285 286 7.912056 TTTCAAAACAAAATGACATTGGTGA 57.088 28.000 15.56 5.72 32.02 4.02
286 287 7.912056 TTCAAAACAAAATGACATTGGTGAA 57.088 28.000 15.56 10.01 31.06 3.18
287 288 7.536895 TCAAAACAAAATGACATTGGTGAAG 57.463 32.000 15.56 6.15 32.02 3.02
288 289 6.538021 TCAAAACAAAATGACATTGGTGAAGG 59.462 34.615 15.56 5.77 32.02 3.46
289 290 5.612725 AACAAAATGACATTGGTGAAGGT 57.387 34.783 15.56 0.00 32.02 3.50
290 291 5.200368 ACAAAATGACATTGGTGAAGGTC 57.800 39.130 15.56 0.00 42.14 3.85
291 292 4.229096 CAAAATGACATTGGTGAAGGTCG 58.771 43.478 0.34 0.00 44.24 4.79
292 293 2.859165 ATGACATTGGTGAAGGTCGT 57.141 45.000 0.00 0.00 44.24 4.34
293 294 1.877637 TGACATTGGTGAAGGTCGTG 58.122 50.000 0.00 0.00 44.24 4.35
294 295 1.156736 GACATTGGTGAAGGTCGTGG 58.843 55.000 0.00 0.00 33.52 4.94
295 296 0.889186 ACATTGGTGAAGGTCGTGGC 60.889 55.000 0.00 0.00 0.00 5.01
296 297 0.888736 CATTGGTGAAGGTCGTGGCA 60.889 55.000 0.00 0.00 0.00 4.92
297 298 0.179004 ATTGGTGAAGGTCGTGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
298 299 0.394488 TTGGTGAAGGTCGTGGCAAA 60.394 50.000 0.00 0.00 0.00 3.68
299 300 0.394488 TGGTGAAGGTCGTGGCAAAA 60.394 50.000 0.00 0.00 0.00 2.44
300 301 0.741915 GGTGAAGGTCGTGGCAAAAA 59.258 50.000 0.00 0.00 0.00 1.94
321 322 5.834239 AAAAATCAGAGCTTCAAAATGCG 57.166 34.783 0.00 0.00 0.00 4.73
322 323 4.510038 AAATCAGAGCTTCAAAATGCGT 57.490 36.364 0.00 0.00 0.00 5.24
323 324 4.510038 AATCAGAGCTTCAAAATGCGTT 57.490 36.364 0.00 0.00 0.00 4.84
324 325 3.272439 TCAGAGCTTCAAAATGCGTTG 57.728 42.857 0.00 0.00 0.00 4.10
325 326 2.877786 TCAGAGCTTCAAAATGCGTTGA 59.122 40.909 0.00 0.00 35.72 3.18
326 327 3.314913 TCAGAGCTTCAAAATGCGTTGAA 59.685 39.130 9.02 9.02 43.51 2.69
327 328 4.043750 CAGAGCTTCAAAATGCGTTGAAA 58.956 39.130 10.20 0.00 44.66 2.69
328 329 4.147653 CAGAGCTTCAAAATGCGTTGAAAG 59.852 41.667 10.20 7.28 44.66 2.62
329 330 4.044426 GAGCTTCAAAATGCGTTGAAAGT 58.956 39.130 10.20 2.65 44.66 2.66
330 331 5.008613 AGAGCTTCAAAATGCGTTGAAAGTA 59.991 36.000 10.20 0.00 44.66 2.24
331 332 5.587289 AGCTTCAAAATGCGTTGAAAGTAA 58.413 33.333 10.20 0.00 44.66 2.24
332 333 5.458779 AGCTTCAAAATGCGTTGAAAGTAAC 59.541 36.000 10.20 0.00 44.66 2.50
333 334 5.231147 GCTTCAAAATGCGTTGAAAGTAACA 59.769 36.000 10.20 0.00 44.66 2.41
334 335 6.074356 GCTTCAAAATGCGTTGAAAGTAACAT 60.074 34.615 10.20 0.00 44.66 2.71
335 336 7.516627 GCTTCAAAATGCGTTGAAAGTAACATT 60.517 33.333 10.20 0.00 44.66 2.71
336 337 7.763172 TCAAAATGCGTTGAAAGTAACATTT 57.237 28.000 0.00 0.00 34.59 2.32
337 338 8.190888 TCAAAATGCGTTGAAAGTAACATTTT 57.809 26.923 0.00 0.00 34.59 1.82
338 339 8.324567 TCAAAATGCGTTGAAAGTAACATTTTC 58.675 29.630 8.17 0.00 34.59 2.29
339 340 7.763172 AAATGCGTTGAAAGTAACATTTTCA 57.237 28.000 0.00 0.00 41.40 2.69
340 341 6.991485 ATGCGTTGAAAGTAACATTTTCAG 57.009 33.333 1.37 0.00 43.22 3.02
341 342 6.125327 TGCGTTGAAAGTAACATTTTCAGA 57.875 33.333 1.37 0.00 43.22 3.27
342 343 6.198687 TGCGTTGAAAGTAACATTTTCAGAG 58.801 36.000 1.37 1.95 43.22 3.35
343 344 5.115622 GCGTTGAAAGTAACATTTTCAGAGC 59.884 40.000 10.98 10.98 43.22 4.09
344 345 6.198687 CGTTGAAAGTAACATTTTCAGAGCA 58.801 36.000 1.37 0.00 43.22 4.26
345 346 6.857964 CGTTGAAAGTAACATTTTCAGAGCAT 59.142 34.615 1.37 0.00 43.22 3.79
346 347 7.059945 CGTTGAAAGTAACATTTTCAGAGCATC 59.940 37.037 1.37 0.00 43.22 3.91
347 348 7.509141 TGAAAGTAACATTTTCAGAGCATCA 57.491 32.000 0.00 0.00 39.05 3.07
348 349 7.939782 TGAAAGTAACATTTTCAGAGCATCAA 58.060 30.769 0.00 0.00 39.05 2.57
349 350 8.579006 TGAAAGTAACATTTTCAGAGCATCAAT 58.421 29.630 0.00 0.00 39.05 2.57
350 351 9.415544 GAAAGTAACATTTTCAGAGCATCAATT 57.584 29.630 0.00 0.00 37.82 2.32
351 352 9.768662 AAAGTAACATTTTCAGAGCATCAATTT 57.231 25.926 0.00 0.00 37.82 1.82
352 353 9.768662 AAGTAACATTTTCAGAGCATCAATTTT 57.231 25.926 0.00 0.00 37.82 1.82
353 354 9.768662 AGTAACATTTTCAGAGCATCAATTTTT 57.231 25.926 0.00 0.00 37.82 1.94
376 377 7.716799 TTTTTATCATGCCTTCCACTAATGT 57.283 32.000 0.00 0.00 0.00 2.71
377 378 6.942532 TTTATCATGCCTTCCACTAATGTC 57.057 37.500 0.00 0.00 0.00 3.06
378 379 3.998913 TCATGCCTTCCACTAATGTCA 57.001 42.857 0.00 0.00 0.00 3.58
379 380 4.508551 TCATGCCTTCCACTAATGTCAT 57.491 40.909 0.00 0.00 0.00 3.06
380 381 4.858850 TCATGCCTTCCACTAATGTCATT 58.141 39.130 3.06 3.06 0.00 2.57
381 382 5.263599 TCATGCCTTCCACTAATGTCATTT 58.736 37.500 2.79 0.00 0.00 2.32
382 383 5.357878 TCATGCCTTCCACTAATGTCATTTC 59.642 40.000 2.79 0.00 0.00 2.17
383 384 3.689161 TGCCTTCCACTAATGTCATTTCG 59.311 43.478 2.79 0.00 0.00 3.46
384 385 3.689649 GCCTTCCACTAATGTCATTTCGT 59.310 43.478 2.79 0.00 0.00 3.85
385 386 4.437390 GCCTTCCACTAATGTCATTTCGTG 60.437 45.833 2.79 11.08 0.00 4.35
386 387 4.935205 CCTTCCACTAATGTCATTTCGTGA 59.065 41.667 20.58 10.12 0.00 4.35
387 388 5.586243 CCTTCCACTAATGTCATTTCGTGAT 59.414 40.000 20.58 0.00 39.48 3.06
388 389 6.761242 CCTTCCACTAATGTCATTTCGTGATA 59.239 38.462 20.58 11.02 39.48 2.15
389 390 7.279981 CCTTCCACTAATGTCATTTCGTGATAA 59.720 37.037 20.58 15.25 39.48 1.75
390 391 8.554835 TTCCACTAATGTCATTTCGTGATAAA 57.445 30.769 20.58 12.85 39.48 1.40
391 392 8.554835 TCCACTAATGTCATTTCGTGATAAAA 57.445 30.769 20.58 6.20 39.48 1.52
392 393 9.173021 TCCACTAATGTCATTTCGTGATAAAAT 57.827 29.630 20.58 0.00 39.48 1.82
393 394 9.787532 CCACTAATGTCATTTCGTGATAAAATT 57.212 29.630 20.58 0.00 39.48 1.82
401 402 9.885743 GTCATTTCGTGATAAAATTTTACATGC 57.114 29.630 12.74 4.37 39.48 4.06
402 403 9.631452 TCATTTCGTGATAAAATTTTACATGCA 57.369 25.926 12.74 6.65 0.00 3.96
403 404 9.674208 CATTTCGTGATAAAATTTTACATGCAC 57.326 29.630 12.74 15.38 0.00 4.57
404 405 8.803201 TTTCGTGATAAAATTTTACATGCACA 57.197 26.923 21.75 11.85 0.00 4.57
405 406 8.803201 TTCGTGATAAAATTTTACATGCACAA 57.197 26.923 21.75 16.07 0.00 3.33
406 407 8.221801 TCGTGATAAAATTTTACATGCACAAC 57.778 30.769 21.75 10.50 0.00 3.32
407 408 7.862873 TCGTGATAAAATTTTACATGCACAACA 59.137 29.630 21.75 11.12 0.00 3.33
408 409 8.483218 CGTGATAAAATTTTACATGCACAACAA 58.517 29.630 21.75 1.72 0.00 2.83
414 415 9.852091 AAAATTTTACATGCACAACAAACATTT 57.148 22.222 0.37 0.00 0.00 2.32
415 416 9.500864 AAATTTTACATGCACAACAAACATTTC 57.499 25.926 0.00 0.00 0.00 2.17
416 417 7.840342 TTTTACATGCACAACAAACATTTCT 57.160 28.000 0.00 0.00 0.00 2.52
417 418 7.840342 TTTACATGCACAACAAACATTTCTT 57.160 28.000 0.00 0.00 0.00 2.52
418 419 8.932945 TTTACATGCACAACAAACATTTCTTA 57.067 26.923 0.00 0.00 0.00 2.10
419 420 8.932945 TTACATGCACAACAAACATTTCTTAA 57.067 26.923 0.00 0.00 0.00 1.85
420 421 7.232945 ACATGCACAACAAACATTTCTTAAC 57.767 32.000 0.00 0.00 0.00 2.01
421 422 5.940603 TGCACAACAAACATTTCTTAACG 57.059 34.783 0.00 0.00 0.00 3.18
422 423 5.403246 TGCACAACAAACATTTCTTAACGT 58.597 33.333 0.00 0.00 0.00 3.99
423 424 6.552629 TGCACAACAAACATTTCTTAACGTA 58.447 32.000 0.00 0.00 0.00 3.57
424 425 7.197017 TGCACAACAAACATTTCTTAACGTAT 58.803 30.769 0.00 0.00 0.00 3.06
425 426 7.166638 TGCACAACAAACATTTCTTAACGTATG 59.833 33.333 0.00 0.00 0.00 2.39
426 427 7.490055 CACAACAAACATTTCTTAACGTATGC 58.510 34.615 0.00 0.00 0.00 3.14
427 428 7.166638 CACAACAAACATTTCTTAACGTATGCA 59.833 33.333 0.00 0.00 0.00 3.96
428 429 7.702772 ACAACAAACATTTCTTAACGTATGCAA 59.297 29.630 0.00 0.00 0.00 4.08
429 430 7.617533 ACAAACATTTCTTAACGTATGCAAC 57.382 32.000 0.00 0.00 0.00 4.17
430 431 7.197017 ACAAACATTTCTTAACGTATGCAACA 58.803 30.769 0.00 0.00 0.00 3.33
431 432 7.702772 ACAAACATTTCTTAACGTATGCAACAA 59.297 29.630 0.00 0.00 0.00 2.83
432 433 8.535592 CAAACATTTCTTAACGTATGCAACAAA 58.464 29.630 0.00 0.00 0.00 2.83
433 434 8.635877 AACATTTCTTAACGTATGCAACAAAA 57.364 26.923 0.00 0.00 0.00 2.44
434 435 8.280909 ACATTTCTTAACGTATGCAACAAAAG 57.719 30.769 0.00 0.00 0.00 2.27
435 436 8.132362 ACATTTCTTAACGTATGCAACAAAAGA 58.868 29.630 0.00 0.00 0.00 2.52
436 437 8.963130 CATTTCTTAACGTATGCAACAAAAGAA 58.037 29.630 0.00 0.00 32.33 2.52
437 438 9.691362 ATTTCTTAACGTATGCAACAAAAGAAT 57.309 25.926 10.92 3.14 33.38 2.40
438 439 9.522804 TTTCTTAACGTATGCAACAAAAGAATT 57.477 25.926 10.92 0.00 33.38 2.17
439 440 8.722342 TCTTAACGTATGCAACAAAAGAATTC 57.278 30.769 0.00 0.00 0.00 2.17
440 441 8.346300 TCTTAACGTATGCAACAAAAGAATTCA 58.654 29.630 8.44 0.00 0.00 2.57
441 442 9.128107 CTTAACGTATGCAACAAAAGAATTCAT 57.872 29.630 8.44 0.00 0.00 2.57
444 445 9.638239 AACGTATGCAACAAAAGAATTCATAAT 57.362 25.926 8.44 0.00 0.00 1.28
445 446 9.638239 ACGTATGCAACAAAAGAATTCATAATT 57.362 25.926 8.44 0.00 0.00 1.40
519 520 8.964476 ATTTATTATACTGTTCACACCAGGAG 57.036 34.615 0.00 0.00 34.16 3.69
520 521 2.770164 ATACTGTTCACACCAGGAGC 57.230 50.000 0.00 0.00 34.16 4.70
521 522 1.419381 TACTGTTCACACCAGGAGCA 58.581 50.000 0.00 0.00 34.16 4.26
522 523 0.767375 ACTGTTCACACCAGGAGCAT 59.233 50.000 0.00 0.00 34.16 3.79
523 524 1.977854 ACTGTTCACACCAGGAGCATA 59.022 47.619 0.00 0.00 34.16 3.14
524 525 2.573462 ACTGTTCACACCAGGAGCATAT 59.427 45.455 0.00 0.00 34.16 1.78
525 526 2.941064 CTGTTCACACCAGGAGCATATG 59.059 50.000 0.00 0.00 0.00 1.78
526 527 2.571202 TGTTCACACCAGGAGCATATGA 59.429 45.455 6.97 0.00 0.00 2.15
527 528 3.201290 GTTCACACCAGGAGCATATGAG 58.799 50.000 6.97 0.00 0.00 2.90
528 529 1.139654 TCACACCAGGAGCATATGAGC 59.860 52.381 6.97 0.00 0.00 4.26
539 540 4.760530 AGCATATGAGCTCAGGTGTAAA 57.239 40.909 22.96 1.75 42.18 2.01
540 541 5.102953 AGCATATGAGCTCAGGTGTAAAA 57.897 39.130 22.96 0.00 42.18 1.52
541 542 5.500234 AGCATATGAGCTCAGGTGTAAAAA 58.500 37.500 22.96 0.00 42.18 1.94
542 543 5.355350 AGCATATGAGCTCAGGTGTAAAAAC 59.645 40.000 22.96 8.81 42.18 2.43
543 544 5.355350 GCATATGAGCTCAGGTGTAAAAACT 59.645 40.000 22.96 2.84 0.00 2.66
544 545 6.457528 GCATATGAGCTCAGGTGTAAAAACTC 60.458 42.308 22.96 4.38 0.00 3.01
545 546 3.740115 TGAGCTCAGGTGTAAAAACTCC 58.260 45.455 13.74 0.00 0.00 3.85
546 547 3.135712 TGAGCTCAGGTGTAAAAACTCCA 59.864 43.478 13.74 0.00 0.00 3.86
547 548 3.477530 AGCTCAGGTGTAAAAACTCCAC 58.522 45.455 0.07 0.00 0.00 4.02
548 549 2.223377 GCTCAGGTGTAAAAACTCCACG 59.777 50.000 0.07 0.00 0.00 4.94
549 550 3.463944 CTCAGGTGTAAAAACTCCACGT 58.536 45.455 0.07 0.00 0.00 4.49
550 551 3.460103 TCAGGTGTAAAAACTCCACGTC 58.540 45.455 0.00 0.00 0.00 4.34
551 552 3.118702 TCAGGTGTAAAAACTCCACGTCA 60.119 43.478 0.00 0.00 0.00 4.35
552 553 3.813166 CAGGTGTAAAAACTCCACGTCAT 59.187 43.478 0.00 0.00 0.00 3.06
553 554 4.062991 AGGTGTAAAAACTCCACGTCATC 58.937 43.478 0.00 0.00 0.00 2.92
554 555 3.187842 GGTGTAAAAACTCCACGTCATCC 59.812 47.826 0.00 0.00 0.00 3.51
555 556 3.810941 GTGTAAAAACTCCACGTCATCCA 59.189 43.478 0.00 0.00 0.00 3.41
556 557 3.810941 TGTAAAAACTCCACGTCATCCAC 59.189 43.478 0.00 0.00 0.00 4.02
557 558 2.631160 AAAACTCCACGTCATCCACA 57.369 45.000 0.00 0.00 0.00 4.17
558 559 1.878953 AAACTCCACGTCATCCACAC 58.121 50.000 0.00 0.00 0.00 3.82
559 560 0.756294 AACTCCACGTCATCCACACA 59.244 50.000 0.00 0.00 0.00 3.72
560 561 0.976641 ACTCCACGTCATCCACACAT 59.023 50.000 0.00 0.00 0.00 3.21
561 562 1.338105 ACTCCACGTCATCCACACATG 60.338 52.381 0.00 0.00 0.00 3.21
562 563 0.972883 TCCACGTCATCCACACATGA 59.027 50.000 0.00 0.00 0.00 3.07
563 564 1.078709 CCACGTCATCCACACATGAC 58.921 55.000 0.00 3.86 46.40 3.06
573 574 7.943079 TCATCCACACATGACAAATATCTTT 57.057 32.000 0.00 0.00 0.00 2.52
574 575 8.352137 TCATCCACACATGACAAATATCTTTT 57.648 30.769 0.00 0.00 0.00 2.27
575 576 8.805175 TCATCCACACATGACAAATATCTTTTT 58.195 29.630 0.00 0.00 0.00 1.94
618 619 7.868906 ACAAATATCATGTCATGTCATGTCA 57.131 32.000 25.46 13.92 43.70 3.58
644 645 7.332430 ACACATGACAAATATCTTGCCAAAATG 59.668 33.333 0.00 0.00 0.00 2.32
807 824 3.128589 TGCACTGAACCTTGAAAGTTGAC 59.871 43.478 0.00 0.00 0.00 3.18
819 836 0.666577 AAGTTGACACTCGCTACGGC 60.667 55.000 0.00 0.00 30.45 5.68
898 920 1.079266 CAGCACTGCCACTCTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
920 944 1.599797 GAAACAGTCACCCCACCCG 60.600 63.158 0.00 0.00 0.00 5.28
992 1333 3.242739 GCCTTGTCGACGCAAATATCATT 60.243 43.478 11.62 0.00 0.00 2.57
1071 1421 1.216977 CGAGGCACCGGTATTGACA 59.783 57.895 6.87 0.00 0.00 3.58
1072 1422 0.806102 CGAGGCACCGGTATTGACAG 60.806 60.000 6.87 0.00 0.00 3.51
1073 1423 0.535335 GAGGCACCGGTATTGACAGA 59.465 55.000 6.87 0.00 0.00 3.41
1074 1424 0.249398 AGGCACCGGTATTGACAGAC 59.751 55.000 6.87 0.00 0.00 3.51
1075 1425 0.036765 GGCACCGGTATTGACAGACA 60.037 55.000 6.87 0.00 0.00 3.41
1076 1426 1.359848 GCACCGGTATTGACAGACAG 58.640 55.000 6.87 0.00 0.00 3.51
1077 1427 1.067142 GCACCGGTATTGACAGACAGA 60.067 52.381 6.87 0.00 0.00 3.41
1078 1428 2.881074 CACCGGTATTGACAGACAGAG 58.119 52.381 6.87 0.00 0.00 3.35
1079 1429 1.204941 ACCGGTATTGACAGACAGAGC 59.795 52.381 4.49 0.00 0.00 4.09
1121 1476 5.403897 TGCTCGCCTATAAATTCTTTTCG 57.596 39.130 0.00 0.00 0.00 3.46
1123 1478 4.260620 GCTCGCCTATAAATTCTTTTCGCA 60.261 41.667 0.00 0.00 0.00 5.10
1125 1480 5.985781 TCGCCTATAAATTCTTTTCGCATC 58.014 37.500 0.00 0.00 0.00 3.91
1186 1575 4.130118 GGAGAAGAAGAGCACACAAGAAA 58.870 43.478 0.00 0.00 0.00 2.52
1187 1576 4.024472 GGAGAAGAAGAGCACACAAGAAAC 60.024 45.833 0.00 0.00 0.00 2.78
1188 1577 3.557595 AGAAGAAGAGCACACAAGAAACG 59.442 43.478 0.00 0.00 0.00 3.60
1189 1578 3.179443 AGAAGAGCACACAAGAAACGA 57.821 42.857 0.00 0.00 0.00 3.85
1190 1579 2.866762 AGAAGAGCACACAAGAAACGAC 59.133 45.455 0.00 0.00 0.00 4.34
1191 1580 2.309528 AGAGCACACAAGAAACGACA 57.690 45.000 0.00 0.00 0.00 4.35
1192 1581 2.205074 AGAGCACACAAGAAACGACAG 58.795 47.619 0.00 0.00 0.00 3.51
1193 1582 1.261619 GAGCACACAAGAAACGACAGG 59.738 52.381 0.00 0.00 0.00 4.00
1194 1583 0.307760 GCACACAAGAAACGACAGGG 59.692 55.000 0.00 0.00 0.00 4.45
1195 1584 0.307760 CACACAAGAAACGACAGGGC 59.692 55.000 0.00 0.00 0.00 5.19
1196 1585 0.107410 ACACAAGAAACGACAGGGCA 60.107 50.000 0.00 0.00 0.00 5.36
1197 1586 1.021202 CACAAGAAACGACAGGGCAA 58.979 50.000 0.00 0.00 0.00 4.52
1198 1587 1.002468 CACAAGAAACGACAGGGCAAG 60.002 52.381 0.00 0.00 0.00 4.01
1199 1588 1.134220 ACAAGAAACGACAGGGCAAGA 60.134 47.619 0.00 0.00 0.00 3.02
1200 1589 1.946768 CAAGAAACGACAGGGCAAGAA 59.053 47.619 0.00 0.00 0.00 2.52
1444 1874 1.080995 GCCATCGAGTGTCTGTCAGC 61.081 60.000 0.00 0.00 0.00 4.26
1454 1931 4.061596 AGTGTCTGTCAGCTTAGCTTTTC 58.938 43.478 3.00 0.00 36.40 2.29
1455 1932 3.059884 TGTCTGTCAGCTTAGCTTTTCG 58.940 45.455 3.00 0.00 36.40 3.46
1456 1933 3.060602 GTCTGTCAGCTTAGCTTTTCGT 58.939 45.455 3.00 0.00 36.40 3.85
1457 1934 3.495001 GTCTGTCAGCTTAGCTTTTCGTT 59.505 43.478 3.00 0.00 36.40 3.85
1458 1935 4.024809 GTCTGTCAGCTTAGCTTTTCGTTT 60.025 41.667 3.00 0.00 36.40 3.60
1459 1936 4.574828 TCTGTCAGCTTAGCTTTTCGTTTT 59.425 37.500 3.00 0.00 36.40 2.43
1562 2056 3.375299 AGAGAGGTTATGTGCAATTTCGC 59.625 43.478 0.00 0.00 0.00 4.70
1584 2124 1.332375 TGCGGTTTACTGTCACTTTGC 59.668 47.619 0.00 0.00 0.00 3.68
1587 2127 2.348218 CGGTTTACTGTCACTTTGCGAC 60.348 50.000 0.00 0.00 0.00 5.19
1629 2170 4.893424 TCTTGAACGCTATAATTTGGCC 57.107 40.909 0.00 0.00 0.00 5.36
1654 2196 0.319211 TAGAACGCACCGGTGAACAG 60.319 55.000 38.30 24.96 0.00 3.16
1674 2216 6.380079 ACAGATACAGACTGAAGGGAATTT 57.620 37.500 10.08 0.00 38.55 1.82
1694 2244 0.324943 GGAGGCTGGCAGTGTTAGAA 59.675 55.000 17.16 0.00 0.00 2.10
1695 2245 1.271379 GGAGGCTGGCAGTGTTAGAAA 60.271 52.381 17.16 0.00 0.00 2.52
1696 2246 2.504367 GAGGCTGGCAGTGTTAGAAAA 58.496 47.619 17.16 0.00 0.00 2.29
1697 2247 2.884639 GAGGCTGGCAGTGTTAGAAAAA 59.115 45.455 17.16 0.00 0.00 1.94
1698 2248 3.500343 AGGCTGGCAGTGTTAGAAAAAT 58.500 40.909 17.16 0.00 0.00 1.82
1699 2249 4.662278 AGGCTGGCAGTGTTAGAAAAATA 58.338 39.130 17.16 0.00 0.00 1.40
1700 2250 5.076873 AGGCTGGCAGTGTTAGAAAAATAA 58.923 37.500 17.16 0.00 0.00 1.40
1701 2251 5.183904 AGGCTGGCAGTGTTAGAAAAATAAG 59.816 40.000 17.16 0.00 0.00 1.73
1702 2252 4.859245 GCTGGCAGTGTTAGAAAAATAAGC 59.141 41.667 17.16 0.00 0.00 3.09
1703 2253 5.041951 TGGCAGTGTTAGAAAAATAAGCG 57.958 39.130 0.00 0.00 0.00 4.68
1704 2254 4.757657 TGGCAGTGTTAGAAAAATAAGCGA 59.242 37.500 0.00 0.00 0.00 4.93
1705 2255 5.239744 TGGCAGTGTTAGAAAAATAAGCGAA 59.760 36.000 0.00 0.00 0.00 4.70
1706 2256 6.146898 GGCAGTGTTAGAAAAATAAGCGAAA 58.853 36.000 0.00 0.00 0.00 3.46
1707 2257 6.305638 GGCAGTGTTAGAAAAATAAGCGAAAG 59.694 38.462 0.00 0.00 0.00 2.62
1708 2258 7.075741 GCAGTGTTAGAAAAATAAGCGAAAGA 58.924 34.615 0.00 0.00 0.00 2.52
1709 2259 7.750903 GCAGTGTTAGAAAAATAAGCGAAAGAT 59.249 33.333 0.00 0.00 0.00 2.40
1710 2260 9.267096 CAGTGTTAGAAAAATAAGCGAAAGATC 57.733 33.333 0.00 0.00 0.00 2.75
1711 2261 8.999431 AGTGTTAGAAAAATAAGCGAAAGATCA 58.001 29.630 0.00 0.00 0.00 2.92
1712 2262 9.607285 GTGTTAGAAAAATAAGCGAAAGATCAA 57.393 29.630 0.00 0.00 0.00 2.57
1715 2265 7.746526 AGAAAAATAAGCGAAAGATCAATGC 57.253 32.000 0.00 0.00 0.00 3.56
1716 2266 7.315142 AGAAAAATAAGCGAAAGATCAATGCA 58.685 30.769 0.00 0.00 0.00 3.96
1717 2267 7.814107 AGAAAAATAAGCGAAAGATCAATGCAA 59.186 29.630 0.00 0.00 0.00 4.08
1718 2268 7.887996 AAAATAAGCGAAAGATCAATGCAAA 57.112 28.000 0.00 0.00 0.00 3.68
1719 2269 7.515957 AAATAAGCGAAAGATCAATGCAAAG 57.484 32.000 0.00 0.00 0.00 2.77
1720 2270 4.771590 AAGCGAAAGATCAATGCAAAGA 57.228 36.364 0.00 0.00 0.00 2.52
1807 2393 3.347216 AGTGTTGTTGTGCAAGAAGTCT 58.653 40.909 0.00 0.00 37.83 3.24
1817 2403 6.156748 TGTGCAAGAAGTCTAACTTAGTCA 57.843 37.500 0.00 0.00 38.80 3.41
1901 2505 8.511604 TTTTGGCATCCAATTTTCAAAGTTTA 57.488 26.923 0.00 0.00 43.55 2.01
1902 2506 8.688747 TTTGGCATCCAATTTTCAAAGTTTAT 57.311 26.923 0.00 0.00 43.55 1.40
1903 2507 9.784531 TTTGGCATCCAATTTTCAAAGTTTATA 57.215 25.926 0.00 0.00 43.55 0.98
1965 2571 0.593128 ATGTTTCTTGTGACCAGCGC 59.407 50.000 0.00 0.00 0.00 5.92
1966 2572 1.082756 GTTTCTTGTGACCAGCGCG 60.083 57.895 0.00 0.00 0.00 6.86
1967 2573 2.892334 TTTCTTGTGACCAGCGCGC 61.892 57.895 26.66 26.66 0.00 6.86
2221 3100 2.106683 CCTCGTGCGGGATTCAACC 61.107 63.158 0.00 0.00 0.00 3.77
2404 3286 0.107214 TGATGCAGGATTCGGGGTTC 60.107 55.000 0.00 0.00 0.00 3.62
2430 3312 8.975439 CCAACATCATTTTCAAAGAAGAAGAAG 58.025 33.333 0.00 0.00 0.00 2.85
2541 3424 7.841956 ACCCGACTGAAGGAAATATGATATAG 58.158 38.462 0.00 0.00 0.00 1.31
2552 3435 6.412362 AAATATGATATAGCCTAGCTCCGG 57.588 41.667 0.00 0.00 40.44 5.14
2568 3451 2.959707 CTCCGGCTCCTGAGTTTACTAT 59.040 50.000 0.00 0.00 0.00 2.12
2637 3531 0.773644 AACACAGATCACCAAGCCCT 59.226 50.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.685302 CACGAAGCAATTCCGGTTTG 58.315 50.000 0.00 8.45 34.55 2.93
1 2 0.039527 GCACGAAGCAATTCCGGTTT 60.040 50.000 0.00 0.00 44.79 3.27
3 4 3.263941 GCACGAAGCAATTCCGGT 58.736 55.556 0.00 0.00 44.79 5.28
7 8 9.318387 TGTCATATGTATGGCACGAAGCAATTC 62.318 40.741 3.32 0.42 42.78 2.17
8 9 7.627564 TGTCATATGTATGGCACGAAGCAATT 61.628 38.462 3.32 0.00 42.78 2.32
9 10 6.202969 TGTCATATGTATGGCACGAAGCAAT 61.203 40.000 3.32 3.72 42.78 3.56
11 12 3.431486 TGTCATATGTATGGCACGAAGCA 60.431 43.478 3.32 0.00 42.78 3.91
12 13 3.130633 TGTCATATGTATGGCACGAAGC 58.869 45.455 3.32 0.00 42.78 3.86
18 19 7.015584 ACTCTCATAAGTGTCATATGTATGGCA 59.984 37.037 3.32 3.32 45.17 4.92
19 20 7.382110 ACTCTCATAAGTGTCATATGTATGGC 58.618 38.462 1.90 0.00 38.72 4.40
20 21 8.579863 TGACTCTCATAAGTGTCATATGTATGG 58.420 37.037 1.90 0.00 46.01 2.74
70 71 2.249139 GGGGGATGCTACTGTAGTAGG 58.751 57.143 18.00 3.55 46.07 3.18
72 73 3.408157 TTGGGGGATGCTACTGTAGTA 57.592 47.619 15.71 12.06 0.00 1.82
73 74 2.263895 TTGGGGGATGCTACTGTAGT 57.736 50.000 15.71 0.00 0.00 2.73
74 75 4.102524 TGTTATTGGGGGATGCTACTGTAG 59.897 45.833 10.48 10.48 0.00 2.74
75 76 4.041464 TGTTATTGGGGGATGCTACTGTA 58.959 43.478 0.00 0.00 0.00 2.74
76 77 2.849943 TGTTATTGGGGGATGCTACTGT 59.150 45.455 0.00 0.00 0.00 3.55
77 78 3.576078 TGTTATTGGGGGATGCTACTG 57.424 47.619 0.00 0.00 0.00 2.74
78 79 4.601406 TTTGTTATTGGGGGATGCTACT 57.399 40.909 0.00 0.00 0.00 2.57
79 80 5.362430 TCAATTTGTTATTGGGGGATGCTAC 59.638 40.000 0.00 0.00 0.00 3.58
80 81 5.523588 TCAATTTGTTATTGGGGGATGCTA 58.476 37.500 0.00 0.00 0.00 3.49
81 82 4.360889 TCAATTTGTTATTGGGGGATGCT 58.639 39.130 0.00 0.00 0.00 3.79
82 83 4.162131 ACTCAATTTGTTATTGGGGGATGC 59.838 41.667 2.77 0.00 33.94 3.91
83 84 5.187576 ACACTCAATTTGTTATTGGGGGATG 59.812 40.000 6.62 0.00 34.94 3.51
84 85 5.341169 ACACTCAATTTGTTATTGGGGGAT 58.659 37.500 6.62 0.00 34.94 3.85
85 86 4.746466 ACACTCAATTTGTTATTGGGGGA 58.254 39.130 6.62 0.00 34.94 4.81
86 87 6.597832 TTACACTCAATTTGTTATTGGGGG 57.402 37.500 0.00 0.00 38.79 5.40
87 88 7.835822 TGATTACACTCAATTTGTTATTGGGG 58.164 34.615 2.77 0.00 33.94 4.96
88 89 9.874205 ATTGATTACACTCAATTTGTTATTGGG 57.126 29.630 0.00 0.00 41.89 4.12
92 93 9.793252 GAGCATTGATTACACTCAATTTGTTAT 57.207 29.630 0.00 0.00 41.89 1.89
93 94 8.243426 GGAGCATTGATTACACTCAATTTGTTA 58.757 33.333 0.00 0.00 41.89 2.41
94 95 7.092716 GGAGCATTGATTACACTCAATTTGTT 58.907 34.615 0.00 0.00 41.89 2.83
95 96 6.350445 GGGAGCATTGATTACACTCAATTTGT 60.350 38.462 0.00 0.00 41.89 2.83
96 97 6.038356 GGGAGCATTGATTACACTCAATTTG 58.962 40.000 0.00 0.00 41.89 2.32
97 98 5.127682 GGGGAGCATTGATTACACTCAATTT 59.872 40.000 0.00 0.00 41.89 1.82
98 99 4.646492 GGGGAGCATTGATTACACTCAATT 59.354 41.667 0.00 0.00 41.89 2.32
99 100 4.210331 GGGGAGCATTGATTACACTCAAT 58.790 43.478 0.00 0.00 44.66 2.57
100 101 3.010027 TGGGGAGCATTGATTACACTCAA 59.990 43.478 0.00 0.00 39.35 3.02
101 102 2.575735 TGGGGAGCATTGATTACACTCA 59.424 45.455 0.00 0.00 0.00 3.41
102 103 2.945668 GTGGGGAGCATTGATTACACTC 59.054 50.000 0.00 0.00 0.00 3.51
103 104 2.308570 TGTGGGGAGCATTGATTACACT 59.691 45.455 0.00 0.00 0.00 3.55
104 105 2.722094 TGTGGGGAGCATTGATTACAC 58.278 47.619 0.00 0.00 0.00 2.90
105 106 3.668141 ATGTGGGGAGCATTGATTACA 57.332 42.857 0.00 0.00 0.00 2.41
112 113 2.893424 ACTTTCAATGTGGGGAGCATT 58.107 42.857 0.00 0.00 37.06 3.56
113 114 2.610438 ACTTTCAATGTGGGGAGCAT 57.390 45.000 0.00 0.00 0.00 3.79
114 115 3.153919 GTTACTTTCAATGTGGGGAGCA 58.846 45.455 0.00 0.00 0.00 4.26
115 116 3.421844 AGTTACTTTCAATGTGGGGAGC 58.578 45.455 0.00 0.00 0.00 4.70
116 117 6.013842 GAAAGTTACTTTCAATGTGGGGAG 57.986 41.667 27.00 0.00 46.23 4.30
128 129 8.135382 TGAGCTCAGGTATAGAAAGTTACTTT 57.865 34.615 13.74 10.38 36.29 2.66
129 130 7.719871 TGAGCTCAGGTATAGAAAGTTACTT 57.280 36.000 13.74 0.00 0.00 2.24
130 131 7.906199 ATGAGCTCAGGTATAGAAAGTTACT 57.094 36.000 22.96 0.00 0.00 2.24
131 132 9.632807 CATATGAGCTCAGGTATAGAAAGTTAC 57.367 37.037 22.96 0.00 0.00 2.50
132 133 8.307483 GCATATGAGCTCAGGTATAGAAAGTTA 58.693 37.037 22.96 4.96 0.00 2.24
133 134 7.016072 AGCATATGAGCTCAGGTATAGAAAGTT 59.984 37.037 22.96 2.62 42.18 2.66
134 135 6.496565 AGCATATGAGCTCAGGTATAGAAAGT 59.503 38.462 22.96 2.84 42.18 2.66
135 136 6.934056 AGCATATGAGCTCAGGTATAGAAAG 58.066 40.000 22.96 5.14 42.18 2.62
136 137 6.924913 AGCATATGAGCTCAGGTATAGAAA 57.075 37.500 22.96 0.00 42.18 2.52
149 150 0.580578 CACAGCACGAGCATATGAGC 59.419 55.000 6.97 1.86 45.49 4.26
150 151 2.214387 TCACAGCACGAGCATATGAG 57.786 50.000 6.97 0.00 45.49 2.90
151 152 2.270923 GTTCACAGCACGAGCATATGA 58.729 47.619 6.97 4.67 45.49 2.15
152 153 2.001872 TGTTCACAGCACGAGCATATG 58.998 47.619 7.77 0.00 45.49 1.78
153 154 2.274437 CTGTTCACAGCACGAGCATAT 58.726 47.619 7.77 0.00 45.49 1.78
154 155 1.713597 CTGTTCACAGCACGAGCATA 58.286 50.000 7.77 0.00 45.49 3.14
155 156 2.536725 CTGTTCACAGCACGAGCAT 58.463 52.632 7.77 0.00 45.49 3.79
156 157 4.032356 CTGTTCACAGCACGAGCA 57.968 55.556 7.77 0.00 45.49 4.26
201 202 9.002080 GCAACAAAAGAATGTCAAAATCTTTTG 57.998 29.630 28.43 28.43 46.70 2.44
202 203 8.728833 TGCAACAAAAGAATGTCAAAATCTTTT 58.271 25.926 14.06 14.06 43.22 2.27
203 204 8.266392 TGCAACAAAAGAATGTCAAAATCTTT 57.734 26.923 6.04 6.04 43.32 2.52
204 205 7.846644 TGCAACAAAAGAATGTCAAAATCTT 57.153 28.000 0.00 0.00 35.00 2.40
205 206 8.981647 GTATGCAACAAAAGAATGTCAAAATCT 58.018 29.630 0.00 0.00 31.81 2.40
206 207 8.981647 AGTATGCAACAAAAGAATGTCAAAATC 58.018 29.630 0.00 0.00 31.81 2.17
207 208 8.891671 AGTATGCAACAAAAGAATGTCAAAAT 57.108 26.923 0.00 0.00 31.81 1.82
208 209 8.715191 AAGTATGCAACAAAAGAATGTCAAAA 57.285 26.923 0.00 0.00 31.81 2.44
209 210 8.715191 AAAGTATGCAACAAAAGAATGTCAAA 57.285 26.923 0.00 0.00 31.81 2.69
210 211 9.809096 TTAAAGTATGCAACAAAAGAATGTCAA 57.191 25.926 0.00 0.00 31.81 3.18
211 212 9.809096 TTTAAAGTATGCAACAAAAGAATGTCA 57.191 25.926 0.00 0.00 31.81 3.58
236 237 4.959596 TGCATGCACAACAAACATTTTT 57.040 31.818 18.46 0.00 0.00 1.94
237 238 4.959596 TTGCATGCACAACAAACATTTT 57.040 31.818 22.58 0.00 0.00 1.82
238 239 4.959596 TTTGCATGCACAACAAACATTT 57.040 31.818 22.58 0.00 0.00 2.32
239 240 4.959596 TTTTGCATGCACAACAAACATT 57.040 31.818 22.58 0.00 33.29 2.71
240 241 5.502153 AATTTTGCATGCACAACAAACAT 57.498 30.435 22.58 8.21 33.29 2.71
241 242 4.959596 AATTTTGCATGCACAACAAACA 57.040 31.818 22.58 0.00 33.29 2.83
242 243 5.330295 TGAAATTTTGCATGCACAACAAAC 58.670 33.333 22.58 12.75 33.29 2.93
243 244 5.556355 TGAAATTTTGCATGCACAACAAA 57.444 30.435 22.58 18.36 0.00 2.83
244 245 5.556355 TTGAAATTTTGCATGCACAACAA 57.444 30.435 22.58 17.07 0.00 2.83
245 246 5.556355 TTTGAAATTTTGCATGCACAACA 57.444 30.435 22.58 11.89 0.00 3.33
246 247 5.798934 TGTTTTGAAATTTTGCATGCACAAC 59.201 32.000 22.58 9.24 0.00 3.32
247 248 5.946298 TGTTTTGAAATTTTGCATGCACAA 58.054 29.167 22.58 21.53 0.00 3.33
248 249 5.556355 TGTTTTGAAATTTTGCATGCACA 57.444 30.435 22.58 12.14 0.00 4.57
249 250 6.866179 TTTGTTTTGAAATTTTGCATGCAC 57.134 29.167 22.58 8.45 0.00 4.57
250 251 7.758076 TCATTTTGTTTTGAAATTTTGCATGCA 59.242 25.926 18.46 18.46 0.00 3.96
251 252 8.051329 GTCATTTTGTTTTGAAATTTTGCATGC 58.949 29.630 11.82 11.82 0.00 4.06
252 253 9.073368 TGTCATTTTGTTTTGAAATTTTGCATG 57.927 25.926 0.00 0.00 0.00 4.06
253 254 9.804758 ATGTCATTTTGTTTTGAAATTTTGCAT 57.195 22.222 0.00 0.00 0.00 3.96
254 255 9.635520 AATGTCATTTTGTTTTGAAATTTTGCA 57.364 22.222 0.00 0.00 27.57 4.08
255 256 9.888637 CAATGTCATTTTGTTTTGAAATTTTGC 57.111 25.926 0.00 0.00 29.29 3.68
258 259 9.570488 CACCAATGTCATTTTGTTTTGAAATTT 57.430 25.926 0.00 0.00 29.29 1.82
259 260 8.954350 TCACCAATGTCATTTTGTTTTGAAATT 58.046 25.926 0.00 0.00 31.40 1.82
260 261 8.503458 TCACCAATGTCATTTTGTTTTGAAAT 57.497 26.923 0.00 0.00 0.00 2.17
261 262 7.912056 TCACCAATGTCATTTTGTTTTGAAA 57.088 28.000 0.00 0.00 0.00 2.69
262 263 7.065563 CCTTCACCAATGTCATTTTGTTTTGAA 59.934 33.333 0.00 0.00 0.00 2.69
263 264 6.538021 CCTTCACCAATGTCATTTTGTTTTGA 59.462 34.615 0.00 0.00 0.00 2.69
264 265 6.315891 ACCTTCACCAATGTCATTTTGTTTTG 59.684 34.615 0.00 0.00 0.00 2.44
265 266 6.413892 ACCTTCACCAATGTCATTTTGTTTT 58.586 32.000 0.00 0.00 0.00 2.43
266 267 5.988287 ACCTTCACCAATGTCATTTTGTTT 58.012 33.333 0.00 0.00 0.00 2.83
267 268 5.600696 GACCTTCACCAATGTCATTTTGTT 58.399 37.500 0.00 0.00 29.85 2.83
268 269 4.261572 CGACCTTCACCAATGTCATTTTGT 60.262 41.667 0.00 0.00 29.85 2.83
269 270 4.229096 CGACCTTCACCAATGTCATTTTG 58.771 43.478 0.00 0.00 29.85 2.44
270 271 3.888930 ACGACCTTCACCAATGTCATTTT 59.111 39.130 0.00 0.00 29.85 1.82
271 272 3.253188 CACGACCTTCACCAATGTCATTT 59.747 43.478 0.00 0.00 29.85 2.32
272 273 2.813754 CACGACCTTCACCAATGTCATT 59.186 45.455 0.00 0.00 29.85 2.57
273 274 2.426522 CACGACCTTCACCAATGTCAT 58.573 47.619 0.00 0.00 29.85 3.06
274 275 1.542328 CCACGACCTTCACCAATGTCA 60.542 52.381 0.00 0.00 29.85 3.58
275 276 1.156736 CCACGACCTTCACCAATGTC 58.843 55.000 0.00 0.00 0.00 3.06
276 277 0.889186 GCCACGACCTTCACCAATGT 60.889 55.000 0.00 0.00 0.00 2.71
277 278 0.888736 TGCCACGACCTTCACCAATG 60.889 55.000 0.00 0.00 0.00 2.82
278 279 0.179004 TTGCCACGACCTTCACCAAT 60.179 50.000 0.00 0.00 0.00 3.16
279 280 0.394488 TTTGCCACGACCTTCACCAA 60.394 50.000 0.00 0.00 0.00 3.67
280 281 0.394488 TTTTGCCACGACCTTCACCA 60.394 50.000 0.00 0.00 0.00 4.17
281 282 0.741915 TTTTTGCCACGACCTTCACC 59.258 50.000 0.00 0.00 0.00 4.02
299 300 5.291971 ACGCATTTTGAAGCTCTGATTTTT 58.708 33.333 0.00 0.00 0.00 1.94
300 301 4.874970 ACGCATTTTGAAGCTCTGATTTT 58.125 34.783 0.00 0.00 0.00 1.82
301 302 4.510038 ACGCATTTTGAAGCTCTGATTT 57.490 36.364 0.00 0.00 0.00 2.17
302 303 4.022935 TCAACGCATTTTGAAGCTCTGATT 60.023 37.500 0.00 0.00 32.42 2.57
303 304 3.503363 TCAACGCATTTTGAAGCTCTGAT 59.497 39.130 0.00 0.00 32.42 2.90
304 305 2.877786 TCAACGCATTTTGAAGCTCTGA 59.122 40.909 0.00 0.00 32.42 3.27
305 306 3.272439 TCAACGCATTTTGAAGCTCTG 57.728 42.857 0.00 0.00 32.42 3.35
306 307 3.988379 TTCAACGCATTTTGAAGCTCT 57.012 38.095 0.00 0.00 39.94 4.09
307 308 4.044426 ACTTTCAACGCATTTTGAAGCTC 58.956 39.130 5.55 0.00 44.33 4.09
308 309 4.045636 ACTTTCAACGCATTTTGAAGCT 57.954 36.364 5.55 0.00 44.33 3.74
309 310 5.231147 TGTTACTTTCAACGCATTTTGAAGC 59.769 36.000 5.55 0.00 44.33 3.86
310 311 6.804534 TGTTACTTTCAACGCATTTTGAAG 57.195 33.333 5.55 4.05 44.33 3.02
311 312 7.763172 AATGTTACTTTCAACGCATTTTGAA 57.237 28.000 1.92 1.92 42.47 2.69
312 313 7.763172 AAATGTTACTTTCAACGCATTTTGA 57.237 28.000 0.00 0.00 34.23 2.69
313 314 8.113062 TGAAAATGTTACTTTCAACGCATTTTG 58.887 29.630 14.92 0.00 42.68 2.44
314 315 8.190888 TGAAAATGTTACTTTCAACGCATTTT 57.809 26.923 11.29 11.29 44.19 1.82
315 316 7.704472 TCTGAAAATGTTACTTTCAACGCATTT 59.296 29.630 2.32 0.00 41.10 2.32
316 317 7.199766 TCTGAAAATGTTACTTTCAACGCATT 58.800 30.769 2.32 0.00 41.10 3.56
317 318 6.734137 TCTGAAAATGTTACTTTCAACGCAT 58.266 32.000 2.32 0.00 41.10 4.73
318 319 6.125327 TCTGAAAATGTTACTTTCAACGCA 57.875 33.333 2.32 0.00 41.10 5.24
319 320 5.115622 GCTCTGAAAATGTTACTTTCAACGC 59.884 40.000 2.32 4.02 41.10 4.84
320 321 6.198687 TGCTCTGAAAATGTTACTTTCAACG 58.801 36.000 2.32 0.00 41.10 4.10
321 322 7.862372 TGATGCTCTGAAAATGTTACTTTCAAC 59.138 33.333 2.32 0.00 41.10 3.18
322 323 7.939782 TGATGCTCTGAAAATGTTACTTTCAA 58.060 30.769 2.32 0.00 41.10 2.69
323 324 7.509141 TGATGCTCTGAAAATGTTACTTTCA 57.491 32.000 0.99 0.99 39.79 2.69
324 325 8.976986 ATTGATGCTCTGAAAATGTTACTTTC 57.023 30.769 0.00 0.00 34.09 2.62
325 326 9.768662 AAATTGATGCTCTGAAAATGTTACTTT 57.231 25.926 0.00 0.00 0.00 2.66
326 327 9.768662 AAAATTGATGCTCTGAAAATGTTACTT 57.231 25.926 0.00 0.00 0.00 2.24
327 328 9.768662 AAAAATTGATGCTCTGAAAATGTTACT 57.231 25.926 0.00 0.00 0.00 2.24
352 353 7.395772 TGACATTAGTGGAAGGCATGATAAAAA 59.604 33.333 0.00 0.00 0.00 1.94
353 354 6.889177 TGACATTAGTGGAAGGCATGATAAAA 59.111 34.615 0.00 0.00 0.00 1.52
354 355 6.422333 TGACATTAGTGGAAGGCATGATAAA 58.578 36.000 0.00 0.00 0.00 1.40
355 356 6.000246 TGACATTAGTGGAAGGCATGATAA 58.000 37.500 0.00 0.00 0.00 1.75
356 357 5.628797 TGACATTAGTGGAAGGCATGATA 57.371 39.130 0.00 0.00 0.00 2.15
357 358 4.508551 TGACATTAGTGGAAGGCATGAT 57.491 40.909 0.00 0.00 0.00 2.45
358 359 3.998913 TGACATTAGTGGAAGGCATGA 57.001 42.857 0.00 0.00 0.00 3.07
359 360 5.585390 GAAATGACATTAGTGGAAGGCATG 58.415 41.667 0.00 0.00 0.00 4.06
360 361 4.336433 CGAAATGACATTAGTGGAAGGCAT 59.664 41.667 0.00 0.00 0.00 4.40
361 362 3.689161 CGAAATGACATTAGTGGAAGGCA 59.311 43.478 0.00 0.00 0.00 4.75
362 363 3.689649 ACGAAATGACATTAGTGGAAGGC 59.310 43.478 0.00 0.00 0.00 4.35
363 364 4.935205 TCACGAAATGACATTAGTGGAAGG 59.065 41.667 24.41 9.25 34.16 3.46
364 365 6.668541 ATCACGAAATGACATTAGTGGAAG 57.331 37.500 24.41 9.50 41.24 3.46
365 366 8.554835 TTTATCACGAAATGACATTAGTGGAA 57.445 30.769 24.41 18.89 41.24 3.53
366 367 8.554835 TTTTATCACGAAATGACATTAGTGGA 57.445 30.769 24.41 16.53 41.24 4.02
367 368 9.787532 AATTTTATCACGAAATGACATTAGTGG 57.212 29.630 24.41 13.48 41.24 4.00
375 376 9.885743 GCATGTAAAATTTTATCACGAAATGAC 57.114 29.630 13.54 0.23 41.24 3.06
376 377 9.631452 TGCATGTAAAATTTTATCACGAAATGA 57.369 25.926 13.54 0.00 43.13 2.57
377 378 9.674208 GTGCATGTAAAATTTTATCACGAAATG 57.326 29.630 13.54 4.74 0.00 2.32
378 379 9.416794 TGTGCATGTAAAATTTTATCACGAAAT 57.583 25.926 13.54 0.00 0.00 2.17
379 380 8.803201 TGTGCATGTAAAATTTTATCACGAAA 57.197 26.923 13.54 3.28 0.00 3.46
380 381 8.695284 GTTGTGCATGTAAAATTTTATCACGAA 58.305 29.630 13.54 11.85 0.00 3.85
381 382 7.862873 TGTTGTGCATGTAAAATTTTATCACGA 59.137 29.630 13.54 14.22 0.00 4.35
382 383 8.001358 TGTTGTGCATGTAAAATTTTATCACG 57.999 30.769 13.54 7.75 0.00 4.35
388 389 9.852091 AAATGTTTGTTGTGCATGTAAAATTTT 57.148 22.222 8.75 8.75 0.00 1.82
389 390 9.500864 GAAATGTTTGTTGTGCATGTAAAATTT 57.499 25.926 0.00 0.00 0.00 1.82
390 391 8.891720 AGAAATGTTTGTTGTGCATGTAAAATT 58.108 25.926 0.00 0.00 0.00 1.82
391 392 8.436046 AGAAATGTTTGTTGTGCATGTAAAAT 57.564 26.923 0.00 0.00 0.00 1.82
392 393 7.840342 AGAAATGTTTGTTGTGCATGTAAAA 57.160 28.000 0.00 0.00 0.00 1.52
393 394 7.840342 AAGAAATGTTTGTTGTGCATGTAAA 57.160 28.000 0.00 0.00 0.00 2.01
394 395 8.812329 GTTAAGAAATGTTTGTTGTGCATGTAA 58.188 29.630 0.00 0.00 0.00 2.41
395 396 7.166638 CGTTAAGAAATGTTTGTTGTGCATGTA 59.833 33.333 0.00 0.00 0.00 2.29
396 397 6.019961 CGTTAAGAAATGTTTGTTGTGCATGT 60.020 34.615 0.00 0.00 0.00 3.21
397 398 6.019961 ACGTTAAGAAATGTTTGTTGTGCATG 60.020 34.615 0.00 0.00 30.39 4.06
398 399 6.039616 ACGTTAAGAAATGTTTGTTGTGCAT 58.960 32.000 0.00 0.00 30.39 3.96
399 400 5.403246 ACGTTAAGAAATGTTTGTTGTGCA 58.597 33.333 0.00 0.00 30.39 4.57
400 401 5.942325 ACGTTAAGAAATGTTTGTTGTGC 57.058 34.783 0.00 0.00 30.39 4.57
401 402 7.166638 TGCATACGTTAAGAAATGTTTGTTGTG 59.833 33.333 0.00 0.00 36.49 3.33
402 403 7.197017 TGCATACGTTAAGAAATGTTTGTTGT 58.803 30.769 0.00 0.00 36.49 3.32
403 404 7.616103 TGCATACGTTAAGAAATGTTTGTTG 57.384 32.000 0.00 0.00 36.49 3.33
404 405 7.702772 TGTTGCATACGTTAAGAAATGTTTGTT 59.297 29.630 0.00 0.00 36.49 2.83
405 406 7.197017 TGTTGCATACGTTAAGAAATGTTTGT 58.803 30.769 0.00 0.00 36.49 2.83
406 407 7.616103 TGTTGCATACGTTAAGAAATGTTTG 57.384 32.000 0.00 0.00 36.92 2.93
407 408 8.635877 TTTGTTGCATACGTTAAGAAATGTTT 57.364 26.923 0.00 0.00 36.28 2.83
408 409 8.635877 TTTTGTTGCATACGTTAAGAAATGTT 57.364 26.923 0.00 0.00 36.28 2.71
409 410 8.132362 TCTTTTGTTGCATACGTTAAGAAATGT 58.868 29.630 0.00 0.00 38.41 2.71
410 411 8.500837 TCTTTTGTTGCATACGTTAAGAAATG 57.499 30.769 0.00 0.00 0.00 2.32
411 412 9.691362 ATTCTTTTGTTGCATACGTTAAGAAAT 57.309 25.926 0.00 0.00 35.53 2.17
412 413 9.522804 AATTCTTTTGTTGCATACGTTAAGAAA 57.477 25.926 0.00 0.00 35.53 2.52
413 414 9.176181 GAATTCTTTTGTTGCATACGTTAAGAA 57.824 29.630 0.00 15.93 35.94 2.52
414 415 8.346300 TGAATTCTTTTGTTGCATACGTTAAGA 58.654 29.630 7.05 0.00 0.00 2.10
415 416 8.500837 TGAATTCTTTTGTTGCATACGTTAAG 57.499 30.769 7.05 0.00 0.00 1.85
418 419 9.638239 ATTATGAATTCTTTTGTTGCATACGTT 57.362 25.926 7.05 0.00 0.00 3.99
419 420 9.638239 AATTATGAATTCTTTTGTTGCATACGT 57.362 25.926 7.05 0.00 0.00 3.57
494 495 7.499232 GCTCCTGGTGTGAACAGTATAATAAAT 59.501 37.037 0.00 0.00 34.16 1.40
495 496 6.821665 GCTCCTGGTGTGAACAGTATAATAAA 59.178 38.462 0.00 0.00 34.16 1.40
496 497 6.070481 TGCTCCTGGTGTGAACAGTATAATAA 60.070 38.462 0.00 0.00 34.16 1.40
497 498 5.423931 TGCTCCTGGTGTGAACAGTATAATA 59.576 40.000 0.00 0.00 34.16 0.98
498 499 4.225042 TGCTCCTGGTGTGAACAGTATAAT 59.775 41.667 0.00 0.00 34.16 1.28
499 500 3.580895 TGCTCCTGGTGTGAACAGTATAA 59.419 43.478 0.00 0.00 34.16 0.98
500 501 3.169908 TGCTCCTGGTGTGAACAGTATA 58.830 45.455 0.00 0.00 34.16 1.47
501 502 1.977854 TGCTCCTGGTGTGAACAGTAT 59.022 47.619 0.00 0.00 34.16 2.12
502 503 1.419381 TGCTCCTGGTGTGAACAGTA 58.581 50.000 0.00 0.00 34.16 2.74
503 504 0.767375 ATGCTCCTGGTGTGAACAGT 59.233 50.000 0.00 0.00 34.16 3.55
504 505 2.768253 TATGCTCCTGGTGTGAACAG 57.232 50.000 0.00 0.00 35.74 3.16
505 506 2.571202 TCATATGCTCCTGGTGTGAACA 59.429 45.455 0.00 0.00 0.00 3.18
506 507 3.201290 CTCATATGCTCCTGGTGTGAAC 58.799 50.000 0.00 0.00 0.00 3.18
507 508 2.420547 GCTCATATGCTCCTGGTGTGAA 60.421 50.000 0.00 0.00 0.00 3.18
508 509 1.139654 GCTCATATGCTCCTGGTGTGA 59.860 52.381 0.00 0.00 0.00 3.58
509 510 1.140452 AGCTCATATGCTCCTGGTGTG 59.860 52.381 0.00 0.00 39.34 3.82
510 511 1.504912 AGCTCATATGCTCCTGGTGT 58.495 50.000 0.00 0.00 39.34 4.16
519 520 5.355350 AGTTTTTACACCTGAGCTCATATGC 59.645 40.000 18.63 4.84 0.00 3.14
520 521 6.037610 GGAGTTTTTACACCTGAGCTCATATG 59.962 42.308 18.63 19.73 0.00 1.78
521 522 6.116126 GGAGTTTTTACACCTGAGCTCATAT 58.884 40.000 18.63 5.36 0.00 1.78
522 523 5.012664 TGGAGTTTTTACACCTGAGCTCATA 59.987 40.000 18.63 3.48 0.00 2.15
523 524 4.202461 TGGAGTTTTTACACCTGAGCTCAT 60.202 41.667 18.63 4.63 0.00 2.90
524 525 3.135712 TGGAGTTTTTACACCTGAGCTCA 59.864 43.478 17.19 17.19 0.00 4.26
525 526 3.498777 GTGGAGTTTTTACACCTGAGCTC 59.501 47.826 6.82 6.82 0.00 4.09
526 527 3.477530 GTGGAGTTTTTACACCTGAGCT 58.522 45.455 0.00 0.00 0.00 4.09
527 528 2.223377 CGTGGAGTTTTTACACCTGAGC 59.777 50.000 0.00 0.00 0.00 4.26
528 529 3.463944 ACGTGGAGTTTTTACACCTGAG 58.536 45.455 0.00 0.00 0.00 3.35
529 530 3.118702 TGACGTGGAGTTTTTACACCTGA 60.119 43.478 0.00 0.00 0.00 3.86
530 531 3.199677 TGACGTGGAGTTTTTACACCTG 58.800 45.455 0.00 0.00 0.00 4.00
531 532 3.547054 TGACGTGGAGTTTTTACACCT 57.453 42.857 0.00 0.00 0.00 4.00
532 533 3.187842 GGATGACGTGGAGTTTTTACACC 59.812 47.826 0.00 0.00 0.00 4.16
533 534 3.810941 TGGATGACGTGGAGTTTTTACAC 59.189 43.478 0.00 0.00 0.00 2.90
534 535 3.810941 GTGGATGACGTGGAGTTTTTACA 59.189 43.478 0.00 0.00 0.00 2.41
535 536 3.810941 TGTGGATGACGTGGAGTTTTTAC 59.189 43.478 0.00 0.00 0.00 2.01
536 537 3.810941 GTGTGGATGACGTGGAGTTTTTA 59.189 43.478 0.00 0.00 0.00 1.52
537 538 2.616842 GTGTGGATGACGTGGAGTTTTT 59.383 45.455 0.00 0.00 0.00 1.94
538 539 2.218603 GTGTGGATGACGTGGAGTTTT 58.781 47.619 0.00 0.00 0.00 2.43
539 540 1.140052 TGTGTGGATGACGTGGAGTTT 59.860 47.619 0.00 0.00 0.00 2.66
540 541 0.756294 TGTGTGGATGACGTGGAGTT 59.244 50.000 0.00 0.00 0.00 3.01
541 542 0.976641 ATGTGTGGATGACGTGGAGT 59.023 50.000 0.00 0.00 0.00 3.85
542 543 1.066929 TCATGTGTGGATGACGTGGAG 60.067 52.381 0.00 0.00 32.18 3.86
543 544 0.972883 TCATGTGTGGATGACGTGGA 59.027 50.000 0.00 0.00 32.18 4.02
544 545 1.078709 GTCATGTGTGGATGACGTGG 58.921 55.000 0.00 0.00 42.09 4.94
549 550 7.943079 AAAGATATTTGTCATGTGTGGATGA 57.057 32.000 0.00 0.00 0.00 2.92
550 551 8.991243 AAAAAGATATTTGTCATGTGTGGATG 57.009 30.769 0.00 0.00 0.00 3.51
616 617 5.008980 TGGCAAGATATTTGTCATGTGTGA 58.991 37.500 0.00 0.00 0.00 3.58
617 618 5.313520 TGGCAAGATATTTGTCATGTGTG 57.686 39.130 0.00 0.00 0.00 3.82
618 619 5.981088 TTGGCAAGATATTTGTCATGTGT 57.019 34.783 0.00 0.00 33.68 3.72
644 645 0.802607 CCGCTACGTGCCTCTTCTTC 60.803 60.000 0.00 0.00 38.78 2.87
779 796 0.602638 CAAGGTTCAGTGCACCGCTA 60.603 55.000 14.63 0.00 39.56 4.26
807 824 1.491563 GTTTGTGCCGTAGCGAGTG 59.508 57.895 0.00 0.00 44.31 3.51
819 836 1.831389 CGACGGCTCACTGGTTTGTG 61.831 60.000 0.00 0.00 39.15 3.33
898 920 0.602905 GTGGGGTGACTGTTTCCTCG 60.603 60.000 3.11 0.00 0.00 4.63
936 1233 4.258543 GACCGGAGTGATTCATTACCAAA 58.741 43.478 9.46 0.00 0.00 3.28
1019 1360 7.125053 TGTTAATTTGTCCTGGGGGAAATAATC 59.875 37.037 0.00 0.00 44.15 1.75
1051 1397 2.125310 CAATACCGGTGCCTCGCA 60.125 61.111 19.93 0.00 35.60 5.10
1071 1421 0.975135 ATGTGTGCTCTGCTCTGTCT 59.025 50.000 0.00 0.00 0.00 3.41
1072 1422 1.077123 CATGTGTGCTCTGCTCTGTC 58.923 55.000 0.00 0.00 0.00 3.51
1073 1423 0.321387 CCATGTGTGCTCTGCTCTGT 60.321 55.000 0.00 0.00 0.00 3.41
1074 1424 0.321387 ACCATGTGTGCTCTGCTCTG 60.321 55.000 0.00 0.00 0.00 3.35
1075 1425 0.321387 CACCATGTGTGCTCTGCTCT 60.321 55.000 2.04 0.00 38.34 4.09
1076 1426 1.303799 CCACCATGTGTGCTCTGCTC 61.304 60.000 8.37 0.00 44.01 4.26
1077 1427 1.303074 CCACCATGTGTGCTCTGCT 60.303 57.895 8.37 0.00 44.01 4.24
1078 1428 1.174712 AACCACCATGTGTGCTCTGC 61.175 55.000 8.37 0.00 44.01 4.26
1079 1429 1.321474 AAACCACCATGTGTGCTCTG 58.679 50.000 8.37 0.00 44.01 3.35
1121 1476 2.092753 TGTGAAGAGAAGATGGGGATGC 60.093 50.000 0.00 0.00 0.00 3.91
1123 1478 3.054802 GTGTGTGAAGAGAAGATGGGGAT 60.055 47.826 0.00 0.00 0.00 3.85
1125 1480 2.038952 TGTGTGTGAAGAGAAGATGGGG 59.961 50.000 0.00 0.00 0.00 4.96
1186 1575 0.832135 TCCTCTTCTTGCCCTGTCGT 60.832 55.000 0.00 0.00 0.00 4.34
1187 1576 0.108424 CTCCTCTTCTTGCCCTGTCG 60.108 60.000 0.00 0.00 0.00 4.35
1188 1577 0.251634 CCTCCTCTTCTTGCCCTGTC 59.748 60.000 0.00 0.00 0.00 3.51
1189 1578 0.178891 TCCTCCTCTTCTTGCCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
1190 1579 0.987294 TTCCTCCTCTTCTTGCCCTG 59.013 55.000 0.00 0.00 0.00 4.45
1191 1580 1.284313 CTTCCTCCTCTTCTTGCCCT 58.716 55.000 0.00 0.00 0.00 5.19
1192 1581 0.254462 CCTTCCTCCTCTTCTTGCCC 59.746 60.000 0.00 0.00 0.00 5.36
1193 1582 1.065782 GTCCTTCCTCCTCTTCTTGCC 60.066 57.143 0.00 0.00 0.00 4.52
1194 1583 1.625818 TGTCCTTCCTCCTCTTCTTGC 59.374 52.381 0.00 0.00 0.00 4.01
1195 1584 3.071602 TGTTGTCCTTCCTCCTCTTCTTG 59.928 47.826 0.00 0.00 0.00 3.02
1196 1585 3.318313 TGTTGTCCTTCCTCCTCTTCTT 58.682 45.455 0.00 0.00 0.00 2.52
1197 1586 2.903135 CTGTTGTCCTTCCTCCTCTTCT 59.097 50.000 0.00 0.00 0.00 2.85
1198 1587 2.900546 TCTGTTGTCCTTCCTCCTCTTC 59.099 50.000 0.00 0.00 0.00 2.87
1199 1588 2.903135 CTCTGTTGTCCTTCCTCCTCTT 59.097 50.000 0.00 0.00 0.00 2.85
1200 1589 2.110899 TCTCTGTTGTCCTTCCTCCTCT 59.889 50.000 0.00 0.00 0.00 3.69
1444 1874 7.322938 GCTACCAAGTAAAAACGAAAAGCTAAG 59.677 37.037 0.00 0.00 0.00 2.18
1454 1931 7.234384 CAGTATGAAGCTACCAAGTAAAAACG 58.766 38.462 0.00 0.00 39.69 3.60
1455 1932 7.361799 CCCAGTATGAAGCTACCAAGTAAAAAC 60.362 40.741 0.00 0.00 39.69 2.43
1456 1933 6.657541 CCCAGTATGAAGCTACCAAGTAAAAA 59.342 38.462 0.00 0.00 39.69 1.94
1457 1934 6.177610 CCCAGTATGAAGCTACCAAGTAAAA 58.822 40.000 0.00 0.00 39.69 1.52
1458 1935 5.249852 ACCCAGTATGAAGCTACCAAGTAAA 59.750 40.000 0.00 0.00 39.69 2.01
1459 1936 4.781087 ACCCAGTATGAAGCTACCAAGTAA 59.219 41.667 0.00 0.00 39.69 2.24
1562 2056 3.617669 CAAAGTGACAGTAAACCGCAAG 58.382 45.455 0.00 0.00 0.00 4.01
1629 2170 2.807895 CGGTGCGTTCTACCCACG 60.808 66.667 0.00 0.00 40.75 4.94
1645 2187 3.850122 TCAGTCTGTATCTGTTCACCG 57.150 47.619 0.00 0.00 34.86 4.94
1654 2196 5.745227 TCCAAATTCCCTTCAGTCTGTATC 58.255 41.667 0.00 0.00 0.00 2.24
1674 2216 0.835971 TCTAACACTGCCAGCCTCCA 60.836 55.000 0.00 0.00 0.00 3.86
1694 2244 7.814107 TCTTTGCATTGATCTTTCGCTTATTTT 59.186 29.630 0.00 0.00 0.00 1.82
1695 2245 7.315142 TCTTTGCATTGATCTTTCGCTTATTT 58.685 30.769 0.00 0.00 0.00 1.40
1696 2246 6.855836 TCTTTGCATTGATCTTTCGCTTATT 58.144 32.000 0.00 0.00 0.00 1.40
1697 2247 6.441093 TCTTTGCATTGATCTTTCGCTTAT 57.559 33.333 0.00 0.00 0.00 1.73
1698 2248 5.878332 TCTTTGCATTGATCTTTCGCTTA 57.122 34.783 0.00 0.00 0.00 3.09
1699 2249 4.771590 TCTTTGCATTGATCTTTCGCTT 57.228 36.364 0.00 0.00 0.00 4.68
1700 2250 4.217118 ACTTCTTTGCATTGATCTTTCGCT 59.783 37.500 0.00 0.00 0.00 4.93
1701 2251 4.322804 CACTTCTTTGCATTGATCTTTCGC 59.677 41.667 0.00 0.00 0.00 4.70
1702 2252 5.455392 ACACTTCTTTGCATTGATCTTTCG 58.545 37.500 0.00 0.00 0.00 3.46
1703 2253 8.292448 TCTAACACTTCTTTGCATTGATCTTTC 58.708 33.333 0.00 0.00 0.00 2.62
1704 2254 8.169977 TCTAACACTTCTTTGCATTGATCTTT 57.830 30.769 0.00 0.00 0.00 2.52
1705 2255 7.750229 TCTAACACTTCTTTGCATTGATCTT 57.250 32.000 0.00 0.00 0.00 2.40
1706 2256 7.750229 TTCTAACACTTCTTTGCATTGATCT 57.250 32.000 0.00 0.00 0.00 2.75
1707 2257 8.976986 ATTTCTAACACTTCTTTGCATTGATC 57.023 30.769 0.00 0.00 0.00 2.92
1708 2258 9.846248 GTATTTCTAACACTTCTTTGCATTGAT 57.154 29.630 0.00 0.00 0.00 2.57
1709 2259 8.015087 CGTATTTCTAACACTTCTTTGCATTGA 58.985 33.333 0.00 0.00 0.00 2.57
1710 2260 7.201266 GCGTATTTCTAACACTTCTTTGCATTG 60.201 37.037 0.00 0.00 0.00 2.82
1711 2261 6.801862 GCGTATTTCTAACACTTCTTTGCATT 59.198 34.615 0.00 0.00 0.00 3.56
1712 2262 6.314784 GCGTATTTCTAACACTTCTTTGCAT 58.685 36.000 0.00 0.00 0.00 3.96
1713 2263 5.613795 CGCGTATTTCTAACACTTCTTTGCA 60.614 40.000 0.00 0.00 0.00 4.08
1714 2264 4.781528 CGCGTATTTCTAACACTTCTTTGC 59.218 41.667 0.00 0.00 0.00 3.68
1715 2265 6.148270 TCGCGTATTTCTAACACTTCTTTG 57.852 37.500 5.77 0.00 0.00 2.77
1716 2266 6.774354 TTCGCGTATTTCTAACACTTCTTT 57.226 33.333 5.77 0.00 0.00 2.52
1717 2267 6.643770 TCTTTCGCGTATTTCTAACACTTCTT 59.356 34.615 5.77 0.00 0.00 2.52
1718 2268 6.154445 TCTTTCGCGTATTTCTAACACTTCT 58.846 36.000 5.77 0.00 0.00 2.85
1719 2269 6.385537 TCTTTCGCGTATTTCTAACACTTC 57.614 37.500 5.77 0.00 0.00 3.01
1720 2270 6.588756 TGATCTTTCGCGTATTTCTAACACTT 59.411 34.615 5.77 0.00 0.00 3.16
1761 2347 2.330216 AGGAGGGATAAACATCCTCGG 58.670 52.381 3.79 0.00 45.91 4.63
1807 2393 9.575868 TCCAAATTAACACCAATGACTAAGTTA 57.424 29.630 0.00 0.00 0.00 2.24
1817 2403 4.658063 TCCTCGTCCAAATTAACACCAAT 58.342 39.130 0.00 0.00 0.00 3.16
1965 2571 6.027131 TCAAAATGGATCTTATTTCAACGCG 58.973 36.000 3.53 3.53 0.00 6.01
1966 2572 7.810766 TTCAAAATGGATCTTATTTCAACGC 57.189 32.000 8.31 0.00 0.00 4.84
2102 2968 8.143835 CCAAGTTTCAACAAGGTTCAGAAATAT 58.856 33.333 0.00 0.00 31.73 1.28
2103 2969 7.488322 CCAAGTTTCAACAAGGTTCAGAAATA 58.512 34.615 0.00 0.00 31.73 1.40
2104 2970 6.340522 CCAAGTTTCAACAAGGTTCAGAAAT 58.659 36.000 0.00 0.00 31.73 2.17
2105 2971 5.719173 CCAAGTTTCAACAAGGTTCAGAAA 58.281 37.500 0.00 0.00 0.00 2.52
2106 2972 4.381505 GCCAAGTTTCAACAAGGTTCAGAA 60.382 41.667 0.00 0.00 0.00 3.02
2107 2973 3.130340 GCCAAGTTTCAACAAGGTTCAGA 59.870 43.478 0.00 0.00 0.00 3.27
2108 2974 3.119173 TGCCAAGTTTCAACAAGGTTCAG 60.119 43.478 0.00 0.00 0.00 3.02
2109 2975 2.828520 TGCCAAGTTTCAACAAGGTTCA 59.171 40.909 0.00 0.00 0.00 3.18
2110 2976 3.518634 TGCCAAGTTTCAACAAGGTTC 57.481 42.857 0.00 0.00 0.00 3.62
2111 2977 4.486125 AATGCCAAGTTTCAACAAGGTT 57.514 36.364 0.00 0.00 0.00 3.50
2112 2978 4.486125 AAATGCCAAGTTTCAACAAGGT 57.514 36.364 0.00 0.00 0.00 3.50
2113 2979 5.816449 AAAAATGCCAAGTTTCAACAAGG 57.184 34.783 0.00 0.00 0.00 3.61
2114 2980 7.769272 TCTAAAAATGCCAAGTTTCAACAAG 57.231 32.000 0.00 0.00 0.00 3.16
2115 2981 7.254727 GCATCTAAAAATGCCAAGTTTCAACAA 60.255 33.333 0.00 0.00 45.07 2.83
2116 2982 6.202570 GCATCTAAAAATGCCAAGTTTCAACA 59.797 34.615 0.00 0.00 45.07 3.33
2160 3036 8.865090 TCCCTCAAAATGATTTAAGTTTAAGCA 58.135 29.630 0.00 0.00 0.00 3.91
2221 3100 0.179215 GCCTCACGATTTGCGAAGTG 60.179 55.000 0.00 0.57 44.57 3.16
2404 3286 8.876275 TTCTTCTTCTTTGAAAATGATGTTGG 57.124 30.769 0.00 0.00 29.54 3.77
2552 3435 5.141910 ACTCCCTATAGTAAACTCAGGAGC 58.858 45.833 14.02 0.00 32.75 4.70
2568 3451 0.963962 GGTGTCGTGTGAACTCCCTA 59.036 55.000 0.00 0.00 0.00 3.53
2669 3566 3.441572 AGTGAGTTGCATTGAATGGCTAC 59.558 43.478 7.35 6.67 36.28 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.