>input_sequence_70088
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------------------------------------------------------------GCGCAGCCCACAAGTGGTCG
ATTATTTC----CCCCAGGACAAATT-AACATGTGCTGCGAGGCACCGGTATT----GACAGACAGAGCAGA----GCAC
ACATGGT-GGTTTTGCTCGCCTATAAATTCTTTTCGCATCCCCATCTTCTCTTCACACACACA--CA------CTCACAC
TC------------AC----------AAGGAGAAGA--AGAG--CACACAAGAAACGACAGGGCAAGAAGAGGAGGAAGG
ACA-------ACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGCAAC------------------TACGGCAGCAC
AAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGA
GGAACGACGGCGCCGGCGCGG------ACAAGAGGGCGT---CAGGCCGCACCAGCTTCGGCGCCTACAA----CTGAAC
CTC---TCAAAGACGCCATCGAGTGTCTGTCAGC----------------------------------------------
-TTAGCTTTTCGTTTTTACTTG---G----TAGCTTCATACTGG----------GTTTTCTTCCCAAGTCTTCTCCCCGG
ATTGTACAGAGTTCTGCGATTGTACAGATGAATAGAGAGGTTATGTGCAATTTCGCTTGCGG------------------
-----TTTACTGTC-----------------------ACTTTGCGACGCAGTGCT-CTTTTTTCTTCTTCTTGAACGCTA
TAATTTGGCCGTGGGTAG-AACGCACCGGTGAACAGATACAGACTGAAGGGAATTTGGA--------GGCTGGCAGTGTT
AGAAAAATAAGCGAAAGATCAATGCAAAGAAGTGTTAG------------------------------------AAATAC
GCGAAA--------------------------------------------------------------------------
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--------------------------------------
>chr1A_1_TraesCS1A01G289800
CAAACCGGAATTGCTTCGTGCCATACATATGACACTTATGAGAGTCAAAAAAAATAAATGTTGTAGTACTCCTACTACAG
TAGCATCCCCCAATAACAAATTGAGTGTAATCAATGCTCCCCACATTGAAAGTAACTTTCTATACCTGAGCTCATATGCT
CGTGCTGTGAACAGTAAAATAAATAAAATAGAAAACTATTTCAAAAGATTTTGACATTCTTTTGTTGCATACTTTAAAAA
ATGTTTGTTGTGCATGCAAAATTTCAAAACAAAATGACATTGGTGAAGGTCGTGGCAAAAAAAATCAGAGCTTCAAAATG
CGTTGAAAGTAACATTTTCAGAGCATCAATTTTTTTTATCATGCCTTCCACTAATGTCATTTCGTGATAAAATTTTACAT
GCACAACAAACATTTCTTAACGTATGCAACAAAAGAATTCATAATTTTTTGAAATATTTTTCTATTTATCTTGAAAAAAT
GTTTTTTCTATTTTATTTATTATACTGTTCACACCAGGAGCATATGAGCTCAGGTGTAAAAACTCCACGTCATCCACACA
TGACAAATATCTTTTTTTTTTTAGATGACACATGACAAATATCATGTCATGTCATGTCACACATGACAAATATCTTGCCA
AAATGAAGAAGAGGCACGTAGCGGATAAGGTCACGGCCAAGGTAGTCCGGTCGACCACGTGGGGTCA----CCCAAGTTG
ACACCCCAGGCC------------AGCATAGCGCCACCGGCAGCAGCCCCAGCCCAGTCCTGCCCCAGCCCCCACTAGCG
GTGCACTGAACCTTGAAAGTTGACACTCGCTACGGCACAAACCAGTGAGCCGTCGCGGTCACATGCATCTCTC-----GG
TGGCTGCAAACAGTCGATGGGCAGCACTGCCACTCTCTCCGAGGAAACAGTCACCC--CACCCGG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GTCCCTCGTCG------------------------
-----------------------------GCCTTTGGTAATGAATCACTCCGGTCGTG----------------------
-------TGGTTA---------------GTGCCTTGTCGACGCAAATATCATTGGCCACAGCGCAGCCCACAAGTGGTCG
ATTATTTC----CCCCAGGACAAATT-AACATGTGCTGCGAGGCACCGGTATT----GACAGACAGAGCAGA----GCAC
ACATGGT-GGTTTTGCTCGCCTATAAATTCTTTTCGCATCCCCATCTTCTCTTCACACACACA--CA------CTCACAC
TC------------AC----------AAGGAGAAGA--AGAG--CACACAAGAAACGACAGGGCAAGAAGAGGAGGAAGG
ACA-------ACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGCAAC------------------TACGGCAGCAC
AAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGA
GGAACGACGGCGCCGGCGCGG------ACAAGAGGGCGT---CAGGCCGCACCAGCTTCGGCGCCTACAA----CTGAAC
CTC---TCAAAGACGCCATCGAGTGTCTGTCAGC----------------------------------------------
-TTAGCTTTTCGTTTTTACTTG---G----TAGCTTCATACTGG----------GTTTTCTTCCCAAGTCTTCTCCCCGG
ATTGTACAGAGTTCTGCGATTGTACAGATGAATAGAGAGGTTATGTGCAATTTCGCTTGCGG------------------
-----TTTACTGTC-----------------------ACTTTGCGACGCAGTGCT-CTTTTTTCTTCTTCTTGAACGCTA
TAATTTGGCCGTGGGTAG-AACGCACCGGTGAACAGATACAGACTGAAGGGAATTTGGA--------GGCTGGCAGTGTT
AGAAAAATAAGCGAAAGATCAATGCAAAGAAGTGTTAG------------------------------------AAATAC
GCGAAAGATCAATGCAAAAAATAGGCCCGAGGATGTTTATCCCTCCTTAGAAGTGTTGTTGTGCAAGAAGTCTAACTTAG
TCATTGGTGTTAATTTGGACGAGGATTTGCGG--------------GGCACTCG-GTCCC-TGGTGCCGGATTTTT--TT
TTTGGCATCCAATTTTCAAAGTTTATA--CATTTAAACAAAAAATTCAAATTAAGTTTTGTTTTCATATTCATGTTTCTT
GTGACCAGCGCGCGTTGAAATAAGATCCATTTTGAATATATTTTCATGACTTT---AAA-A-AATGTTAAGTTTCAATGT
T-AAACATA--------GTATGAGTGACTGATAAAAAATATATTTTTTGTGTCTACAACCAACATATTTTTT--A-----
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
AAAAATTATATTTCTGAACCTTGTTGAAACTTGGC----------ATTTTTAGATGCAAAAATTGTAAGTTTTATTGCTT
AAACTTAAATCA-TTTTGAGGGATTTT-C-TTTTACTATGGCCTCGTGCGGGATTCAACCACTTCGCAAATCGTGAGGCA
AATCGAGCGGGCAGCAGGCTTTGGCAGGTGAGTGCCCCC--CACTAGCGTGCCCCTACGAATTTCCGTTGTTAT-TTTTT
CGTGTTTTATAGTCTACTTGTTGTATTTGACCTCGTTGCCTTGTATCGTGGTTGTGTGCATCAAAATGATGCAGGATTCG
GGGTTCCAACATCATTTTCAAAGAAGAAGAAG-AATGTATATGAAGTTGTAGATGTTATCATTTTCCTCTATAAATTTAA
ACAAGTTTATCTTAAGACAAACCAAATAAGTCTTGTAAACCCGACTGAAGGAAATATGATATAGCCTAGCTCCGGCTCCT
GAGTTTACTATAGGGAGTTCACACGACACCACCAAAAACTCCAT-----------AACTAAGGGCAACTCCAACACAGAT
CACCAAGCCCTTAG---ATGTCCGAAACGGACGGTCCGGGCACTTGTAGCCATTCAATGCAACTCACTGTATCTG-TTGG
GCCAGTCCGGACGTCTAAAATCTCACAAATCATCCTCA
>chr1D_617
TCACCACATGTG--------------------------------------------------------------------
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------------------------------------------------------------------CAAATATCTTGCCA
AAATCAAGAAGAGGCACGTAGCGGATAAGGTCGCGGTCAAGATATTTCGGTCGACCACGTGGGGTCA----CCCAAGTTG
ACACCCGAGGC----AGGCTAGCTAGCATAGCGCCA-----------------------------------CCACGAGCG
ATGCACTGAACCTTGAAAATTGAAGCTCGCTGCAGTACAAATCAGTGAGCCGTCACGGTCACATGCATCTCTCCTCTCGG
AC----GAAATAGTCAAGGGGCAGCACTG-----CTCACGGAGGAAACGGTCACCCGGTCCCTCGCCACTCGCCAGCCTT
GCTCTTGCCACCCTGAATTATTATCCGAGTCGTCTGCACAAACCTAATACTTTCTTCGATTCATATTAATTGTCGATGAT
TTAGAGGATGTGTATATAAGAATCCATGCACACTCGTTTTCAACTCGTTGGCACGATGGAGCCGTCTGGATGACACCGTG
AATTTCTGTTTTGCATGGGCGAGAATGCGGTCTGGACTGACGACCGTCAGTGATCTTTGGATGATCCATTCAGAAGTTGT
CTTCAAAGATGCCCCCTGCCATCTCCCTTGCCCTTGGTGATGAATCACTCCAGTCGTTCTCGCTCTATGGAGCACTCGTG
TGGCTACTGGCT---------------AGTGCCGTGTTGGCACAGACATCATAGGCCACATCATAGGCCGCAAGTGGTCA
ATTATTTTATTTCCACAAGACAAATT-AACATGTGCGGCAAGGCACCGGTATT----GAC---------AGA----GCAC
AGATGAT-GGTTTGGCTCGCCTATAAATGCTTTACACCTTCCCATCTCCTCTTCACACACAGA--CT------CACACTC
AC------------AC----------AT-AAGAAGA--AGAGAGAAAGCAAGAA---------------GAGGAGGAAGG
ACAACAGTCAACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGCAACAGCGGCATGAG---CAACTACGGCAGCAC
AAAGGAGAGGAGGCCGCCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGA
GGAACGACGGCGCGGGCGCGG------ACAAGAGGGCATCTGCAGGTCGCACCAGCTTCGGCGCCTACAA----CTGAAG
CTC------AAGGCGCCATCGAGTGTCAG----ATGCACTCGCACGGACGCCC-CTTTCTTCAGACCTGACTAGTT----
------TTTT------TTACTTGGTAGTCCTAGCTTCATACTGG----------TTTTTGTTCCCAAGTCTTCTCCCCCG
ATTGTACAGAGTTCTGCGATTGTACAGATGAATTGAGAGGTTATGTGCAATTTCGTATCACTTTTTTTTTAACCGGGCTT
ACCCCTTTCGTATC-----------------------ACTTTGTGATGCAGCACT-CCTTTTTTTCCTTCTTGAACGCTA
TAACTTGGTTGTGCGTAGAAACGCACGGGTGAACAAATACAGACTGAAGGGAAATCAGA--------GGCTGGC------
------------------------------AGTGTTAGAAAATACGGGAAAGATCAATGCAAAAAAGTGTTAGAAAATAC
GCCAATGATCAATGCAAAAAATAGGCACGAGGAAGTTAATCCCTTCTTAGAGGTGTTGTTGTGCAGGAAATT-GACTTAG
TCGTTGGTGTTAATTTGGATGAGGATTTGCGGCACGTAAGTGCGGGGACACTCA-GGTCC-TGGTGCCGCCCTTTT--AT
TTTGGCTTTCCATTTTCAAAGTTTTATATCGTTTAAACAAAAAAATTAAATTAAGTTTTATTTTCGTATTCGTGTTTATT
GTGACTAGCGT--GTTGAGATAAGATCCATTTTAAATATATTTTGACAACTTCTAAAAA-G-TATGTTAAGTTTC----T
TGAAACTTA--------GTACCAGTGATCGGTAAAAATCAATATTTTGTGTTCTAGGATCGA---AAAAATAGCT-----
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
AAAATTATGTC-----------TATGAAACTTGCC----------A-TTTTAGAAGCAGAAACTGTAAGTTTTATCGTTG
AAACTTAAATATTATTT-AGTGATTTTCCTTTTTACTATGCCCTCGTGCGGGATTCAACTACTTTAAAAATCGCGAGGCA
AATCAAGCGGGCGGCGTGCCTTGGTAGGTGAGTGCC-CTTGCACTCGCGTGCCCCTGTGAATTTCTGATGTTAA-TTTTC
CATGTTTTATAATCTACTTATTGCATTTGACCTTGTCGCCTTGTATCATAGTTGTGTGCATCATGATGATGAAGGGTTCA
GGGTTTCAACCTCGTTTTCAAAGAAGAAGAAATAGTTCATATGAAGCCGAAGGTGTTATCATTTTCCTCTATAAATTTAA
ATAAGTTTATTTTAAGACAAACCAAATATGTCTTGTAAACCCAAGTGGAGGAAATATGACATAACCTAGCACCGACTCCT
GAGTTTACTACAGTGAACTCATACAACACCATCAAAAACATTATATATTATGTAAAACTAAGGGCAACTCCAACACAAAT
CACCAAACCCCTAGCAAATGACCAAAACAGACGCTTCGGGCACCTTTAGCCATCCAACGCAACTCACCAAATCAGTTTGG
GCCGGTCCGAATGTCTAAAATCTCACAAATCAT-----
>chr1D_620
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-----------------------------------------------------------CACATGCCAAATATCGTGCCA
AAATTAAGAAGAGGCACGTAGCGGATAAGGTCACGGCCAAGATAGTCCGGTCGACCACGTGGGGTCA----GCCAAGTTG
ACACCCTAGGCC------------AGCATAGCGCCACCGGCAGCAGCCCCACTAG-------------------CGAGCG
GTGCACCGAACCTTGAAAGTTGAAACTCGCTACGGTACGAACCAGTGAGCCGTCGCGGTCACATGCGTCTCTC-----GG
TGGCTGCAAACAGTCAATGGGCAGCACCG-----CTCACGGAGGAAACAGTCACCC--CAGCC-G---------------
--------------------------------------------------------------------------------
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---------------------------------------------GTCCCTCGTCG------------------------
-----------------------------G-CCTTGGTAATGAATCACTCCGGTCGTG----------------------
-------TGGTTAAAGATGCCCCGGTTAGTGCCTTGTCGACGCAAATATCATCGGCCACAGCGCAGCCCACAAGTGGTCA
ATTATTTC----CCGCAGGACAAATT-AACATGTGCGGCGAGGCGCCGGTATT----GAC---------AGACAGAGCAC
ACATGGT-GGTTTAGCTCGCCTATAAATTCTTTTCACCTTCCCATCTTCTCTTCACACACACAGACA------CACTCAC
TC------------AC----------AAGGAGAAGA--AGAG--CAAACAAGAA---------------GAGGAGGAAAG
ACA-------ACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGCAACAGCGGCATCACTACCAACTACGGCGGCGC
AAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGA
GGAACGACGGCGCGGGCGCGG------GCAAAGGGGCGT---CAGGCTGCACTAGCTTCGGCGCCTACAA----CTGAAC
CTC---TCAAAGACGCCATCGAGTGTCTGTCAGA----------------------------------------------
-TTAGCTTTT------TACCTG---G----TAGCTTCATACTGG----------TTTTTCTTCCCAAGTCTTCTTCCCCG
ATTGTACAGAGTTCTGTGATTGTACAGATGAATAGAGAGGTTATGTGGAATTTCGTGTGCGG------------------
-----TGTACTCTC-----------------------ACTTTGTGATGCAGTGCT-CTTTTTTCTTCTTCTTGAACGCTA
TTGTTTGGCTGTGCGTAG-AACGCACGAGTGAACAAATACAGACTGAAGGGAATTCGGA--------GGCTGGCAGTGTT
AGA-----------------------------------AAAATAAGCGAAAGATCAATGCAAAGAAGTGTTAGAAAATAC
GCGAAAGATCAATGCAAAAAATAGGCGCCAGGATGTTTATCCCTCCTTAGAAGTGTTGTTGTGCAAGAAGTCAGACTTAA
TCGTTGGTGTTAATTTGCACGAGGATTTGCGGCACACAATTGC-GGGGCAATCG-GTCCC-TGGTGCCGGC--TTT--TT
TTTGGCATCCGATTTTTAATGTTCTATATC--------------------------------------------------
---------------------------------------------------------------------------AATGT
TAAAACTTAGTACGACTGTACGAGTGACTAATAAAAAACAATTATTTTGTGTCTACGACCGACAGACTTTTT--T-----
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
AAAATTATATC-----------GTTGAAACTTGGC----------ATTTTTAGATGCAAAAATTGTAAGTTTTATCGTTA
AA-CTTAAATCG-TTTTGAGGGATTTT-CTTTTTACTGTGGCCTCGTGCGGGGTTCAACTACTTCGCAAATCGTGAGGCA
AATCGAGCGGACAGCAGGCTTTGGCAGGTGAGTGCCCCCCGCACTCGCGTGCCCCTGCGAATTTCCGTTGTTAT-TTTTC
C-TGTTTTATAGTCTACTTGTTGTATTTGATCTCATTGCCTTGTATCGTGGTTGTGTGCATCAAAATGATGCAGGGTTCG
GGGTTTCAACATCATTTTCAAAGAAGAAGAAATAATTTATATGAAGCTGTAGATGTTATCATTTTCCTCTATAAATTTAA
ACAAGTTAATCTTAAGACAAACCAAATAAGTCTTGTAAACCCGACTGAAGGAAATATGATATAACCTAGCTTCGACTCAT
GAGTTTACTACAGGGAGTGCACACGACACCACCAAAAACTCCAT-----------AACTAAGGGCAACTCCAACACAGAT
CACCAAGCCCCTAGCAGATGTCCGAAACGGACGGTCCGGACACTTTTAGCCATTCAATGCAACTCACCGTATCTG-TTGG
GCCAGTCCGGACGTCTAAAATCTCACAAATCGTCCTCA
>chr1B_620
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-----------------------------------------------------------CACATGACAAATTTCTTGCCA
AAACTAACAAAAGGCACGTAGCGGATAAGGTCACGGCCAAGGTAGTCCGGTCGACCACGTGGGGTCATTCCCCCAAGTTG
ACACCCGAGGCC------------AGCATAGCGCCACCGGCAGCAGCCCCACTAG-------------------CGAGCG
GTGCACCGAACCTTGAAAGTTGAAGCTCGCTACGGTACAAACCAGTGAGCCGTCGCGGTCACATGCGTCTCTC-----GG
TGGCCGGAAACAGTCAATGGGCAGCACCG-----CTCTCGGACGAAACGGTCACCC--CACCC-G---------------
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---------------------------------------------GTCCCTCGTCG------------------------
-----------------------------G-CCTT-GTAATGAGTCACTCCGGTCGTG----------------------
-------TGGTC---------------AGTGCCTTGTCGACGCAAATATCATCGGCCACGGCGCAGCCCACGAGTGGTCA
ATTATT-----TCCCCAACACAAATT-AACATGTGCGGCGAGGCACCGGTATCGACAGAC---------AGA----GCAC
AGATGGT-GGTTTTGCTCGCCTATAAATTCTTTTCACCTTCCCATCTTCTCTTCACACACACA--CAGACACACTCACAC
TC------------AC----------AAGGAGAAGA--AGAG--CACACAAGAA---------------GAGGA--AAGG
ACA-------ACACGGAAAGAAGAGCCATGGAGCACTCCTACAGCAGCAACAGCGGCATCAG---CAACTACGGCAGCAC
AAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGTCGCCGA
GGAACGACGGCGCGGGCGCGG------GCAAAGGGGCGT---CAGGCCGCACCAGCTTCGGCGCCTACAA----CTGACG
CTC---TCAAAGACGCCATCGAGTGTCTGTCAGA----------------------------------------------
-TTAGCTTTT------TACTTG---G----TAACTTCATA-----------------------CCAAGTCTTCTCCCCCG
ATTGTACAGAGTTCTGCGATTGTACAAATGAATAGAGATGTTATGTGCAATTTCGTTTGCGG------------------
-----TTTACTGTC-----------------------ACTTTGAGATGCAGTGCT-CTTTTTTCTTCTTCTTGAACGCTA
TAATTTGGCTGTGGGTAGAA-CGCACGACTGAACAAATACAGACTGAAGGTGATTCAGACTTTCAGAGGCTAGC------
------------------------------AGTGTTAGAGAACACGCGAAAGATCAATGCAAA-----------------
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>chr1B_620
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-----------------------------------------------------------CACATGACAAATATCTTGCCA
AAATCAAGAAGAGGCACGTAGCGGATAAGGTCACGGTCAAGATATTTCGGTCGACCACGTGGGGTCG----ACCAAGTTG
ACACCCCAGGCAGGCAGGCTAGCTAGCATAGCGCCACCAGCAGCACAGCAG---------------------CACGAGCG
ATGCCCTGAACCTTGAAAATTGAAACTCGCTGCAGTACAAATCAGTGAGCCGTTACGGTCACATGCATCTCTC-----GG
AC----AAAATAGTCAAGGGGCAGCACTG-----CTCTCGTGGTATTTGGTTCACTGTCACCC-G---------------
--------------------------------------------------------------------------------
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---------------------------------------------GTCAGTGATATTTGGTTCATTTGTTCAAAAGTTGT
CTTCAAATATGCCCTCGGCCATCTCCCTTGCCCTTGGTGGTGAATCACTCCAGTCGTTTTCGTTCTACGGAGCACTCGTG
TGGCTACTTGCT---------------AGTGCCGTGTCGGCACAGGCAGCATGGGCCACATCACAGCCCGCAAGTGGTCA
TTTATT-----TTCCCAAGACAAATT-AACATGTGCGGCAAGGCGCCGGTATT----GAC---------AGA----GCAC
AGATGATGGGTTTGGTTCGCCTATAAATACTTTCCAACTTCCCATGTTCTCTTCACACACTCA--CA------CTCACAC
TC------------AAGAAGAAGAAGAAGAAGAAGA--AGAA--GAAGCAAGAA---------------GAGGAGGAAGG
ACG-------ACAGAGAAAGAAGAGCCATGGAGCACTCCTACAGCAGCTACAGCGGCATCAG---CAACTACGGCAGCGC
AAAGGAGAGGAGGCCTGCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCGA
GGAACGACGGCGCCGGCGCGG------ACAAGAGGGCAT---CAGGTCGCACCAGCATCGGCGCCTACAA----CTGACG
CTG------AGGACGCCATCGAGTGTCAG----ATGCACTCGCACGGACGCCCGCTTCCTTCAGACCTGATTAGCT----
------TTTT------TACTTT---G----TAGCTTCATACTGGACTAGTACTGTTTTTCTTCCCAAGTCTTCT---CCG
ATTGTACAGAGTTCTGCGATTGTACAGATGAATAGAGAGGTTATATGCAATTTCGTGTGCAG------------------
-----TGTACTATC-----------------------ACTTTGTGATGCACTACTCCTTTTTTTTTCTCCTTGAACGCTA
TAATATGGTTGTGCGCAGAC-CGCACAAGTGAACAAATACAGACTGGAGGGAAATCAGA--------GGCTGAC------
------------------------------AGTGTTAGAAAATACGCAAAAGATCAATGCAAAGAA--------------
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>chr1A_963
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-------TGGCT---------------AGTGCCGTGTCGGCACATACATCATGGGCCACATCACAGCCCACAAGTGGTCA
ATTATT-----TTCCCAAGACAAATTTAACATGTGCGGCAAGGCGCCGGTATT----GAC---------AGA----GCAC
AGATGAT-GGTTTGGTTCGCCTATAAATACTTTTCACCTTCCCATGTTCTCTTCACACACACA--CA------CTCACAC
AAAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGA-AG--AAAGCAAGAA---------------GAGGAGGAAGG
ACA-------ACACAGAAAGCAGAGCCATGGAGCACTCCTATAGCAGCAACAGCGGCATCAG---CAACTACGGCAGCGC
AAAAGAGAGGAGGCCTCCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCATGCGGACCATCAGCAACCTCATGGCGCCCA
GGAACGCCGGCGCCGGCGCGG------ACAAGAGAGCGT---CAGGCCGCACCACCTTCGGCGCCTACAA----CTGAAG
CTCCCATCAAAGACGCCGTCGGCTGTCTGTCAGAA-CACTCGCACGGACGCCC-CTTCCTTCAGAGTTCAGAACCATCAG
ATTAGCTTTT------TACTTG---G----TAGCTTCATACTGG----------GTTTTCTTCCCAGGTCTTCTCCCCGG
ATTGTACAGAGTTATGCGATTGTACAGATGAATAGAGAGGTTATGTGCAATTTCGTGTGCGG------------------
-----TCACTTTCTGATGCAGTCGTTTCGAAAAGAAAACTTTGTGATGCAGTACTCCTTC--TCTTCTTCTTGAACGCTA
TAATTTGGCTGTGGGTAGAA-CGCACGGGTGAACA---------------------------------------------
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>chr1A_963
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-------TGGCT---------------AGCGCCGTGTCGGCACAGACAGCATGGGCCACATCACAGCCCACGAGTGGTCA
ATTATT-----TTCCCAAGACAAA-TTAACATGTGCGGCAAGGCGCCGGTATT----GAC---------AGA----GCAC
AGATGAT-GGTTTGGTTCGCCTATAAATACTTTTCACCTTCCCATGTTCTCTTCACACACACA--CT------CACACA-
-AAAGAAGAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAGAG--AAAGCAAGAA---------------GAGGAGGAAGG
ACA-------ACACAGAAAGCAGAGCCATGGAGCACTCGTACAGCAGCAACAGCGGCATCAG---CAACTACGGCAGCGC
AAAGGAGAGGAGGCCTCCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGGCGCCCA
GGAACGACGGCGCCGGCGCGGGCGCGGACAAGGGGCCGT---CAGGCCGCACCAGCTTCGGCGCCTACAATTAACTGAAG
CTC---TCAAAGACGCCATCGAATGTCTGTCAGATGCACTCGCACGGACGCTC-CCTTAC------TTTAGATCCACCAG
ATTAGCTTTT------CACTTAGCAG----TAGCTTCATATTGG----------GTTTTCTTCCCAAGTCTTCTCC---G
ATTGTACA---------GATTGTACAGATGAATAGAGAGGTTATGTGGAATTTCGTGTGCGG------------------
-----TGTACTAGC-----------------------A------------------------------------------
--------------------------------------------------------------------------------
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-----------TCACTTTG-------------------------------------------------------------
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>chr1A_1722
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------------------------------AGTGCTAGAAAATACGTGAAAGATCAATGCAAAAAA--------------
---------------------TAGGCGCAAGGACGTTTATCCCTTCTTAGAGGTGTTGTTGTGCAAGAAGTCAAT-TTAG
TCGCTGGTGTTAATTTGGACGAGGATTTGCGGCACGCACGTGCGGGTGCACTCA-GGTCATTGGTGCCGGCTTTTT--AT
TTTGGCTTTCGATTTGCAAAGTTCTATATCATTTAAACAAAAAAATTAAATTAAGTTTT-TTTTCATATTCGTGTTTCTC
GTGACCAATGT--GTTGAAATAAGATCCATTTTGAATATATTTGGACGACTTTTAAAAAAG-TATGTGAAATTTCAATGT
TGAAACTTA--------GTATGAGTGACCGATAAAATTCAATTATTTTGTGTCTACGGCTGACAGAAAAATTGCT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
AAAATTATGTC-----------TCTGAAACTTGGC----------ATTTATAGATGGAAAAACTGTAAGTTTTATCATTG
AAACTTAAATATTTTTTGAGAGATTTTCTTTTTTACTGTGCCCTCGTGCGAGATTCAACTACTTCGCAACTCGGGAGGCA
AATCGAGCGGGCGACAGGCCTTGGCAGGTGAGTG--CCCCGCACTCACGTGCCCCTACGAATTTCCGGTGTTAAATTTCC
A-TGTTTTATAGTGTACTTGTTGTATTTGAGCTTGTTGCCTTGTCTCATGGTTGTGTGCATCACAATGACGAAGGATTCT
--GTTTCAACCTCACTTTCAAAGAAGAAGAAATAATTTATATGAAGCTGTAGATGTTATCATTTTCCTCTATAAATTTAA
ACAAGTTTATCTTAAGACAAACCAAATAAGTCTTGTAAACCCGACTGGAGGAAATATGACATAACCTAG-----------
-ACTTGACTACATGGAGTTCATATGACATCACCAAAGACAT--TATATTATGTAAAACTAAGGGCAACTCCAACACAGAT
CACCAAACCCCTAGCAAATGTCCGAAGGAGACGGTCCAAGCACTTTTAGCCATCCAACGCAACTCACTGAATCCGTTTGG
GCCAGTCCAGATGTCTAAAATCTCACAAATCATCCTCA
>chr1B_1840
ATGTGCGT------------------------------------------------------------------------
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-------------------------------G--------------GGCACTCAAGTCCC-CGGTGCCTTTTTCTAAAAT
TTTGGCGTCCAATTTTCAAAGTTCTATATCATTCAAACAAAAAATTCAAATTAAATTTTGTTTTCATATTCATGTTTCTC
GTGACTAGCGT--GTTGAAATAAGATCCATTTTGAATATATTTGGACGACTTTTAGAAAAATTATGTTAAATTTCAATGT
TGAAACTTA--------GTACGAGTGACCGATAAAAATCAATTAGTTTGTGACTACGACCGACAGCAAAATTGCTTAACA
TTACAAAAATGCTAAATCCGAACATTTAGATTTTAAGCATGGCAACCCGACCCATTTTCATGGCAATTTAATTCACGCGA
GGTTGACGAACATTGCAATTTTCTGACAAAAAATGATCTGGAACAAAGTTGTCATGTTTTAACAACTGAAATCGTCACCT
CGCGTAAACTAATATTGCCATGAAAAAATGTTCGGAGTGACATGCTTAAAATCCAAACACTTGGGATTTATCGGGGTTCT
AAAATTATATC-----------TCTGGAACTTGTTGAAACTTAGGATTTTTTGATGCAAAAACTGTAAGTTTTGTCGTTG
AAACTTAAATCG-TTTAGAGGGATTTTCTTTTTTACA------------GGGATTCAACTACTTCATGAATCGCGAGGCA
AATCGAGCG--CAGCAAGCCTTGGCAGGTGAGTACT-CCCACACTCGCGTGCCCCTACGAATTTTCAGTGTTAATTTTCC
A-TGTTTTATAGTCTGCTTGTTGTATTTGACCTCATTGCCTTATATCAAGGTTGTGTGCATCACAATGATGTAGAGTTTG
GGGTTTCAACCTCATTTTCAAAGAAGA-GAAATAATCTATATGAAGTTGTAGATGTTATCATTTTTCTCTATAAATTTAA
ACAAGTTTGTCTTAAGATAAACCAAATAAGTCTTGTAAACCCAACTGGAGGAAATTTGACATAACCTAGCTCCAACTATT
GATTTTAGAGCAGGGAGTTTATAGGACACCACCGAAGACAT--TATAATATGTAAAACTAAGGGCAACTCCAACACGGAT
CACCAAACCCCTAGCAAATATCTGAAATGGACGGTCCAGGCACTTTTAGCCATCCAACG-AACTCACCGAATCTGTTTGG
GCCGGTCCAGACGTCTAAAATCTCACAAATCGTTCTCA
>SNPs
SS-S---SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
----S---------------------------------------------------------------------------
---------------------------------------------------SSSSSSSSSSSSSSSSSSSS----S----
-----------------------S-----------S--------------------------------------------
---------------S-------------SSSSS-----S-----------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
----------------------------------------------------S--------------------------S
------------------------------------S-----------------------SSSSSSSSS-----------
-----------------------------------S-S-S----------------------------------------
------------------------------------------------------SSSSSSSSSSSSSSS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
----------SSSSSS----------------------------------------------------------------
-------------------------------------------------------S------------------------
-------------------------------------------S--S---------------------------------
---------S----------------S--------S-------------------S------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------
--------------------------S---------------------------------------------S-------
--S-------------------------------------------------------------------S---------
------------------------SSS-----------------------------------------------------
----------SSS-------------------------------S-S---------------S-----------------
------S-------------------------------S-SS--------------S---S---S-S-------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
----S-SSSSSSSSSSSSSSSS-----------------------------------------------------S-S-S
-----------S-----------------------------------------------S--------------------
---------------------------------------------S---------------------------------S
-S------------------------------------------------------------------------------
-----S-------------------------S----S-------------------------------------------
---------------------------------------------------------------S----------S-----
----------S---------------------------------------------------------------------
----------S----------------------------------S----------------------------------
--------------------------------------
>forward_21
-AAACCGGAATTGCTTCGTGC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>reverse_1576
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CGACAGGGCAAGAAGAGGAG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>forward_1425
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGCACCGGTATTGACAGACA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>reverse_3100
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CACTTCGCAAATCGTGAGGC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
