AutoCloner

Multiple sequence alignment - TraesCS1A01G288000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G288000	chr1A	100.000	3410	0	0	1	3410	485216822	485213413	0.000000e+00	6298.0
1	TraesCS1A01G288000	chr1A	90.710	549	48	3	1579	2126	372396247	372395701	0.000000e+00	728.0
2	TraesCS1A01G288000	chr1A	87.783	442	54	0	1145	1586	372464848	372464407	5.040000e-143	518.0
3	TraesCS1A01G288000	chr1A	98.077	52	1	0	1	52	356441282	356441231	1.300000e-14	91.6
4	TraesCS1A01G288000	chr1D	94.544	1503	60	6	761	2254	385053417	385051928	0.000000e+00	2302.0
5	TraesCS1A01G288000	chr1D	89.161	572	54	2	1146	1717	298606734	298606171	0.000000e+00	706.0
6	TraesCS1A01G288000	chr1D	84.556	518	37	17	1	493	385054094	385053595	1.110000e-129	473.0
7	TraesCS1A01G288000	chr1D	88.452	407	26	3	1841	2247	298606170	298605785	3.980000e-129	472.0
8	TraesCS1A01G288000	chr1D	98.148	54	1	0	643	696	385053485	385053432	1.010000e-15	95.3
9	TraesCS1A01G288000	chr1D	97.826	46	1	0	555	600	385053545	385053500	2.820000e-11	80.5
10	TraesCS1A01G288000	chr1B	94.697	1471	54	7	787	2254	517508376	517506927	0.000000e+00	2263.0
11	TraesCS1A01G288000	chr1B	91.054	939	83	1	1258	2196	402044428	402043491	0.000000e+00	1267.0
12	TraesCS1A01G288000	chr1B	83.974	780	51	26	46	760	517895338	517894568	0.000000e+00	680.0
13	TraesCS1A01G288000	chr1B	92.045	88	7	0	830	917	402050342	402050255	1.280000e-24	124.0
14	TraesCS1A01G288000	chr3D	91.785	1193	64	19	2248	3410	614276351	614277539	0.000000e+00	1629.0
15	TraesCS1A01G288000	chr3D	74.960	619	117	19	1655	2245	511941116	511940508	2.030000e-62	250.0
16	TraesCS1A01G288000	chr3D	94.231	52	3	0	1	52	429641239	429641290	2.820000e-11	80.5
17	TraesCS1A01G288000	chr7D	91.491	1187	75	14	2248	3410	631674270	631673086	0.000000e+00	1609.0
18	TraesCS1A01G288000	chr7A	82.143	504	60	16	2254	2729	699408613	699408112	4.100000e-109	405.0
19	TraesCS1A01G288000	chr7A	85.564	381	47	6	2748	3121	699407484	699407105	3.190000e-105	392.0
20	TraesCS1A01G288000	chr7A	91.765	85	7	0	2246	2330	182378654	182378570	5.980000e-23	119.0
21	TraesCS1A01G288000	chr7A	96.296	54	2	0	1	54	690832241	690832188	4.690000e-14	89.8
22	TraesCS1A01G288000	chr7A	94.340	53	3	0	2	54	665988390	665988338	7.840000e-12	82.4
23	TraesCS1A01G288000	chr7A	95.455	44	1	1	1	44	2044578	2044620	6.110000e-08	69.4
24	TraesCS1A01G288000	chr2D	80.838	501	65	15	2250	2728	485099755	485100246	6.950000e-97	364.0
25	TraesCS1A01G288000	chr6A	80.973	473	52	23	2246	2694	614861630	614861172	1.170000e-89	340.0
26	TraesCS1A01G288000	chr5A	77.941	408	54	19	2247	2636	267891710	267892099	4.430000e-54	222.0
27	TraesCS1A01G288000	chr5A	96.296	54	2	0	1	54	644351418	644351365	4.690000e-14	89.8
28	TraesCS1A01G288000	chr3B	76.976	291	58	5	1707	1994	674280053	674279769	1.270000e-34	158.0
29	TraesCS1A01G288000	chr3B	93.827	81	5	0	2247	2327	820423905	820423825	4.620000e-24	122.0
30	TraesCS1A01G288000	chr2A	92.941	85	6	0	2247	2331	73150053	73149969	1.280000e-24	124.0
31	TraesCS1A01G288000	chr4A	91.765	85	7	0	2246	2330	437914958	437914874	5.980000e-23	119.0
32	TraesCS1A01G288000	chr4A	94.444	54	3	0	1	54	652859595	652859542	2.180000e-12	84.2
33	TraesCS1A01G288000	chr5D	90.909	88	7	1	2247	2333	543473151	543473064	2.150000e-22	117.0
34	TraesCS1A01G288000	chr2B	96.078	51	2	0	1	51	5756111	5756061	2.180000e-12	84.2
35	TraesCS1A01G288000	chr4B	92.593	54	2	1	1	54	495634450	495634399	3.650000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G288000	chr1A	485213413	485216822	3409	True	6298.0	6298	100.0000	1	3410	1	chr1A.!!$R4	3409
1	TraesCS1A01G288000	chr1A	372395701	372396247	546	True	728.0	728	90.7100	1579	2126	1	chr1A.!!$R2	547
2	TraesCS1A01G288000	chr1D	385051928	385054094	2166	True	737.7	2302	93.7685	1	2254	4	chr1D.!!$R2	2253
3	TraesCS1A01G288000	chr1D	298605785	298606734	949	True	589.0	706	88.8065	1146	2247	2	chr1D.!!$R1	1101
4	TraesCS1A01G288000	chr1B	517506927	517508376	1449	True	2263.0	2263	94.6970	787	2254	1	chr1B.!!$R3	1467
5	TraesCS1A01G288000	chr1B	402043491	402044428	937	True	1267.0	1267	91.0540	1258	2196	1	chr1B.!!$R1	938
6	TraesCS1A01G288000	chr1B	517894568	517895338	770	True	680.0	680	83.9740	46	760	1	chr1B.!!$R4	714
7	TraesCS1A01G288000	chr3D	614276351	614277539	1188	False	1629.0	1629	91.7850	2248	3410	1	chr3D.!!$F2	1162
8	TraesCS1A01G288000	chr3D	511940508	511941116	608	True	250.0	250	74.9600	1655	2245	1	chr3D.!!$R1	590
9	TraesCS1A01G288000	chr7D	631673086	631674270	1184	True	1609.0	1609	91.4910	2248	3410	1	chr7D.!!$R1	1162
10	TraesCS1A01G288000	chr7A	699407105	699408613	1508	True	398.5	405	83.8535	2254	3121	2	chr7A.!!$R4	867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
166	167	0.185901	TGCAGCTCCACCCTTTTCTT	59.814	50.0	0.0	0.0	0.0	2.52	F
1063	1160	0.103026	CCCGTCAGATCGATTGCAGA	59.897	55.0	0.0	0.0	0.0	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1612	1712	0.034186	GTGGATCCTTGATGCCCACA	60.034	55.0	14.23	0.0	44.83	4.17	R
2759	3526	0.174617	AACAGGGGCGTTTTGTTGTG	59.825	50.0	0.00	0.0	34.04	3.33	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	3.914426	GAGAATTGCTAGAAGTGGGGA	57.086	47.619	0.00	0.00	0.00	4.81
35	36	5.843019	AGTGGGGATCAACTTCTTAAGAA	57.157	39.130	16.85	16.85	0.00	2.52
36	37	6.394345	AGTGGGGATCAACTTCTTAAGAAT	57.606	37.500	18.02	3.17	33.01	2.40
37	38	6.183347	AGTGGGGATCAACTTCTTAAGAATG	58.817	40.000	18.02	14.20	33.01	2.67
38	39	5.946377	GTGGGGATCAACTTCTTAAGAATGT	59.054	40.000	18.02	14.48	33.01	2.71
39	40	7.037586	AGTGGGGATCAACTTCTTAAGAATGTA	60.038	37.037	18.02	5.44	33.01	2.29
40	41	7.610305	GTGGGGATCAACTTCTTAAGAATGTAA	59.390	37.037	18.02	10.37	33.01	2.41
41	42	7.829211	TGGGGATCAACTTCTTAAGAATGTAAG	59.171	37.037	18.02	8.78	33.01	2.34
166	167	0.185901	TGCAGCTCCACCCTTTTCTT	59.814	50.000	0.00	0.00	0.00	2.52
276	301	7.043788	GGAATAAGAGGTTAACGTCGTATGTTC	60.044	40.741	26.40	22.30	36.25	3.18
307	332	4.080919	CAGATGACTACACCCTGAATCCAA	60.081	45.833	0.00	0.00	34.33	3.53
314	339	0.856982	ACCCTGAATCCAACCCAACA	59.143	50.000	0.00	0.00	0.00	3.33
320	345	4.586841	CCTGAATCCAACCCAACAAACTTA	59.413	41.667	0.00	0.00	0.00	2.24
325	350	5.055265	TCCAACCCAACAAACTTAGATGA	57.945	39.130	0.00	0.00	0.00	2.92
327	352	6.074648	TCCAACCCAACAAACTTAGATGATT	58.925	36.000	0.00	0.00	0.00	2.57
329	354	6.868339	CCAACCCAACAAACTTAGATGATTTC	59.132	38.462	0.00	0.00	0.00	2.17
363	415	3.873910	TCCAAGGCGAAAGAATAAGAGG	58.126	45.455	0.00	0.00	0.00	3.69
465	517	2.359900	GTCGAGGATCAGTGGCAAAAT	58.640	47.619	0.00	0.00	33.17	1.82
555	607	5.818678	ACACATAGAGGTTTACAGGTTCA	57.181	39.130	0.00	0.00	0.00	3.18
589	665	4.745649	AGAGCGCTACGAAAATAGAACTT	58.254	39.130	11.50	0.00	0.00	2.66
619	698	5.793675	CATGACTTGCAGAAGTAGAAATCG	58.206	41.667	0.00	0.00	42.80	3.34
655	734	0.391661	GATTTGGAGACGGCAGCAGA	60.392	55.000	0.00	0.00	0.00	4.26
701	792	4.954970	CAACCACAGCGCCCCACT	62.955	66.667	2.29	0.00	0.00	4.00
721	812	1.822990	TGAGGGTTGCGTTCCTACTAG	59.177	52.381	0.00	0.00	32.74	2.57
722	813	1.823610	GAGGGTTGCGTTCCTACTAGT	59.176	52.381	0.00	0.00	32.74	2.57
730	821	1.792993	CGTTCCTACTAGTTCCGTGCG	60.793	57.143	0.00	0.00	0.00	5.34
808	899	2.035632	GAGTCTCATTCCCACGATCCT	58.964	52.381	0.00	0.00	0.00	3.24
952	1049	1.002468	CCTCTTGTGTTCGGTTGCAAG	60.002	52.381	0.00	0.00	39.52	4.01
1031	1128	8.752766	AAATAAAACATGAACTTGCAGATCAG	57.247	30.769	0.00	0.00	30.44	2.90
1063	1160	0.103026	CCCGTCAGATCGATTGCAGA	59.897	55.000	0.00	0.00	0.00	4.26
1064	1161	1.269988	CCCGTCAGATCGATTGCAGAT	60.270	52.381	0.00	0.00	0.00	2.90
1065	1162	2.477825	CCGTCAGATCGATTGCAGATT	58.522	47.619	0.00	0.00	0.00	2.40
1066	1163	3.552890	CCCGTCAGATCGATTGCAGATTA	60.553	47.826	0.00	0.00	0.00	1.75
1067	1164	3.672397	CCGTCAGATCGATTGCAGATTAG	59.328	47.826	0.00	0.00	0.00	1.73
1068	1165	3.672397	CGTCAGATCGATTGCAGATTAGG	59.328	47.826	0.00	0.00	0.00	2.69
1144	1241	5.617087	GCGACCAAAATTGAGTCTTTAGACC	60.617	44.000	6.28	0.00	45.85	3.85
1169	1269	0.467804	GGAGGAGCAGATCTTGGGAC	59.532	60.000	0.00	0.00	0.00	4.46
1383	1483	2.159170	GGCTAGTGTCAGCTTCACCTAG	60.159	54.545	13.21	13.69	41.50	3.02
1474	1574	2.610727	GGTCTACAACACAGAGACAGCC	60.611	54.545	3.88	0.00	41.18	4.85
1574	1674	6.045318	CAGCTGTATGTGTTGAAGTATAGCT	58.955	40.000	5.25	0.00	40.68	3.32
1612	1712	1.278985	TCATTTGAGGTGATGTCCGCT	59.721	47.619	0.00	0.00	0.00	5.52
1701	1801	0.744874	CTGCCATTCAGCAAGGATGG	59.255	55.000	11.21	11.21	43.52	3.51
1705	1805	1.340248	CCATTCAGCAAGGATGGCATC	59.660	52.381	19.23	19.23	37.68	3.91
1756	1856	1.741706	CACACCATCTTCATGTCTGCC	59.258	52.381	0.00	0.00	0.00	4.85
1924	2027	3.305335	GGTACATTTGTTCCTGCCAAGTG	60.305	47.826	0.00	0.00	36.11	3.16
2044	2168	1.485895	AGCACCATGTTTTGCCTTGTT	59.514	42.857	7.40	0.00	39.75	2.83
2332	2457	8.255206	TGCAAGTAAGAATATTTAGAGACCGAA	58.745	33.333	0.00	0.00	0.00	4.30
2354	2479	5.869753	AGATCAAAAGAAGACGTCAATGG	57.130	39.130	19.50	0.36	0.00	3.16
2636	2789	6.834969	TCATTGCCTAATCAATCATCCTTCAA	59.165	34.615	0.00	0.00	34.68	2.69
2717	2875	7.345691	TGAAGGCTATAGGAAATGATTCAACA	58.654	34.615	1.04	0.00	37.29	3.33
2736	2894	6.041511	TCAACATTGAAATATTCGGCATTGG	58.958	36.000	0.00	0.00	33.55	3.16
2783	3554	0.597377	CAAAACGCCCCTGTTTCTGC	60.597	55.000	0.00	0.00	41.01	4.26
2809	3580	5.011943	AGCTCAAAGAAATTTGGCAACCATA	59.988	36.000	0.00	0.00	33.53	2.74
2817	3588	9.830975	AAGAAATTTGGCAACCATATTAATACC	57.169	29.630	0.00	0.00	34.89	2.73
2822	3593	6.260700	TGGCAACCATATTAATACCTCACT	57.739	37.500	0.00	0.00	0.00	3.41
2825	3596	7.936847	TGGCAACCATATTAATACCTCACTTAG	59.063	37.037	0.00	0.00	0.00	2.18
2880	3651	9.729281	AAAGTTTACTTCCCGAATATTTACAGA	57.271	29.630	0.00	0.00	34.61	3.41
2899	3671	9.739276	TTTACAGATGATCAAGAACTAACCATT	57.261	29.630	0.00	0.00	0.00	3.16
2929	3701	4.735662	TGTTTGTACTATGCAACCGAAC	57.264	40.909	0.00	0.00	0.00	3.95
2954	3726	0.321671	CACGGGACACTGGACAATCT	59.678	55.000	0.00	0.00	0.00	2.40
3070	3842	1.257750	ATGGAGAGCACCGCTACACA	61.258	55.000	0.00	0.00	39.88	3.72
3092	3864	0.480690	TACAGCTTGGCCCCAAAGAA	59.519	50.000	0.00	0.00	35.33	2.52
3147	3919	2.552315	TGAAAACCGAGCAAATCAGTCC	59.448	45.455	0.00	0.00	0.00	3.85
3328	4117	1.068333	CAAGGCCATTGAGAAACACCG	60.068	52.381	5.01	0.00	41.83	4.94
3351	4140	3.883669	AGGAAGAAAAGCTATCAGCCAG	58.116	45.455	10.91	0.00	43.77	4.85
3359	4148	1.271934	AGCTATCAGCCAGCATACTCG	59.728	52.381	0.00	0.00	43.77	4.18
3371	4160	4.436050	CCAGCATACTCGAAAATCACACAC	60.436	45.833	0.00	0.00	0.00	3.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	5.805728	TCTTAAGAAGTTGATCCCCACTTC	58.194	41.667	16.42	16.42	38.94	3.01
16	17	8.047310	TCTTACATTCTTAAGAAGTTGATCCCC	58.953	37.037	21.75	0.00	35.55	4.81
35	36	6.825213	TCTGCTGCAAATCTTACATCTTACAT	59.175	34.615	3.02	0.00	0.00	2.29
36	37	6.172630	TCTGCTGCAAATCTTACATCTTACA	58.827	36.000	3.02	0.00	0.00	2.41
37	38	6.668541	TCTGCTGCAAATCTTACATCTTAC	57.331	37.500	3.02	0.00	0.00	2.34
38	39	7.255491	CATCTGCTGCAAATCTTACATCTTA	57.745	36.000	3.02	0.00	0.00	2.10
39	40	6.132791	CATCTGCTGCAAATCTTACATCTT	57.867	37.500	3.02	0.00	0.00	2.40
40	41	5.752892	CATCTGCTGCAAATCTTACATCT	57.247	39.130	3.02	0.00	0.00	2.90
141	142	1.968540	GGGTGGAGCTGCAGTTGTC	60.969	63.158	16.64	9.76	0.00	3.18
251	253	7.485913	TGAACATACGACGTTAACCTCTTATTC	59.514	37.037	5.50	0.32	0.00	1.75
254	256	6.252967	TGAACATACGACGTTAACCTCTTA	57.747	37.500	5.50	0.00	0.00	2.10
255	257	5.125100	TGAACATACGACGTTAACCTCTT	57.875	39.130	5.50	0.00	0.00	2.85
256	258	4.771590	TGAACATACGACGTTAACCTCT	57.228	40.909	5.50	0.00	0.00	3.69
257	259	6.029607	TGTATGAACATACGACGTTAACCTC	58.970	40.000	5.50	0.00	44.97	3.85
276	301	5.987953	CAGGGTGTAGTCATCTGATTGTATG	59.012	44.000	0.00	0.00	33.15	2.39
307	332	5.335661	GCGAAATCATCTAAGTTTGTTGGGT	60.336	40.000	0.00	0.00	0.00	4.51
314	339	5.119694	GGAGGAGCGAAATCATCTAAGTTT	58.880	41.667	0.00	0.00	30.85	2.66
320	345	0.249657	GCGGAGGAGCGAAATCATCT	60.250	55.000	0.00	0.00	30.85	2.90
325	350	1.439644	GAGAGCGGAGGAGCGAAAT	59.560	57.895	0.00	0.00	43.00	2.17
327	352	3.141488	GGAGAGCGGAGGAGCGAA	61.141	66.667	0.00	0.00	43.00	4.70
329	354	3.423162	CTTGGAGAGCGGAGGAGCG	62.423	68.421	0.00	0.00	43.00	5.03
363	415	9.485206	TTCCAGTTCAGTTTCAGTTAGTATAAC	57.515	33.333	0.00	0.00	0.00	1.89
540	592	2.165319	AGCGTGAACCTGTAAACCTC	57.835	50.000	0.00	0.00	0.00	3.85
619	698	2.358939	ATCGGGTTGTGTCGTACTTC	57.641	50.000	0.00	0.00	0.00	3.01
630	709	1.644786	GCCGTCTCCAAATCGGGTTG	61.645	60.000	5.06	0.00	43.77	3.77
633	712	1.815421	CTGCCGTCTCCAAATCGGG	60.815	63.158	5.06	0.00	43.77	5.14
698	789	0.320374	TAGGAACGCAACCCTCAGTG	59.680	55.000	0.00	0.00	34.11	3.66
701	792	1.822990	CTAGTAGGAACGCAACCCTCA	59.177	52.381	0.00	0.00	34.11	3.86
721	812	2.884207	GGGATCGACGCACGGAAC	60.884	66.667	0.00	0.00	42.82	3.62
722	813	4.485834	CGGGATCGACGCACGGAA	62.486	66.667	3.99	0.00	42.82	4.30
790	881	1.757118	TGAGGATCGTGGGAATGAGAC	59.243	52.381	0.00	0.00	38.61	3.36
808	899	2.342279	CCGCCTTCGACTGGTTGA	59.658	61.111	5.65	0.00	38.10	3.18
918	1015	7.446106	AACACAAGAGGGGAACACATATATA	57.554	36.000	0.00	0.00	0.00	0.86
919	1016	5.975988	ACACAAGAGGGGAACACATATAT	57.024	39.130	0.00	0.00	0.00	0.86
920	1017	5.625886	CGAACACAAGAGGGGAACACATATA	60.626	44.000	0.00	0.00	0.00	0.86
921	1018	4.589908	GAACACAAGAGGGGAACACATAT	58.410	43.478	0.00	0.00	0.00	1.78
952	1049	3.924686	TCGAATTAAGAAACCGACTCTGC	59.075	43.478	0.00	0.00	0.00	4.26
1021	1118	2.816087	GCTTCTTTGACCTGATCTGCAA	59.184	45.455	0.00	0.00	0.00	4.08
1029	1126	1.675641	CGGGGGCTTCTTTGACCTG	60.676	63.158	0.00	0.00	34.90	4.00
1031	1128	1.674651	GACGGGGGCTTCTTTGACC	60.675	63.158	0.00	0.00	0.00	4.02
1078	1175	4.130118	ACACAACAAGACAGATCTGGAAC	58.870	43.478	26.08	16.20	34.48	3.62
1144	1241	1.110442	AGATCTGCTCCTCCGAGTTG	58.890	55.000	0.00	0.00	38.49	3.16
1169	1269	1.519455	GACGCTTGGACATCCCTCG	60.519	63.158	0.00	0.00	35.38	4.63
1383	1483	2.544267	GCAGCGAAGTACATGGGATAAC	59.456	50.000	0.00	0.00	0.00	1.89
1483	1583	2.920384	GGGAGAGGAGGGCCGATC	60.920	72.222	0.00	0.00	39.96	3.69
1574	1674	2.844946	TGACTGTCGCATTTCCTTGAA	58.155	42.857	2.98	0.00	0.00	2.69
1612	1712	0.034186	GTGGATCCTTGATGCCCACA	60.034	55.000	14.23	0.00	44.83	4.17
1692	1792	2.029623	AGTTGATGATGCCATCCTTGC	58.970	47.619	1.49	0.00	46.64	4.01
1701	1801	1.221414	GGCGTAGGAGTTGATGATGC	58.779	55.000	0.00	0.00	0.00	3.91
1705	1805	0.940126	GCATGGCGTAGGAGTTGATG	59.060	55.000	0.00	0.00	0.00	3.07
1924	2027	1.856265	CTTTGTCGGTGCAGGAAGCC	61.856	60.000	0.00	0.00	44.83	4.35
2031	2155	4.493547	CAAACTCTCAACAAGGCAAAACA	58.506	39.130	0.00	0.00	0.00	2.83
2044	2168	4.098960	AGTTCTTCACGTACCAAACTCTCA	59.901	41.667	0.00	0.00	0.00	3.27
2289	2414	3.591196	TGCATGGTTTGAATACTTGGC	57.409	42.857	0.00	0.00	0.00	4.52
2332	2457	5.180117	CACCATTGACGTCTTCTTTTGATCT	59.820	40.000	17.92	0.00	0.00	2.75
2341	2466	1.798813	GACCACACCATTGACGTCTTC	59.201	52.381	17.92	0.00	0.00	2.87
2354	2479	3.923461	CGATCTTCTCTCAAAGACCACAC	59.077	47.826	0.00	0.00	38.06	3.82
2427	2557	9.103861	GATGCTATTAAGAATATGTCCCTAAGC	57.896	37.037	0.00	0.00	0.00	3.09
2571	2724	6.952773	TTACTACTTGGCATTTGTTTCAGT	57.047	33.333	0.00	0.00	0.00	3.41
2583	2736	8.484799	GTTTGTTGCTTAATTTTACTACTTGGC	58.515	33.333	0.00	0.00	0.00	4.52
2636	2789	5.325239	AGCCCAGCAGAGTAAAACTAAAAT	58.675	37.500	0.00	0.00	0.00	1.82
2717	2875	6.469782	ACTTCCAATGCCGAATATTTCAAT	57.530	33.333	0.00	0.00	0.00	2.57
2729	2887	3.319122	AGTTTCACTCAACTTCCAATGCC	59.681	43.478	0.00	0.00	32.81	4.40
2733	2891	7.491048	GCAATTTTAGTTTCACTCAACTTCCAA	59.509	33.333	0.00	0.00	38.07	3.53
2736	2894	7.487829	TGTGCAATTTTAGTTTCACTCAACTTC	59.512	33.333	0.00	0.00	38.07	3.01
2759	3526	0.174617	AACAGGGGCGTTTTGTTGTG	59.825	50.000	0.00	0.00	34.04	3.33
2783	3554	4.024641	GGTTGCCAAATTTCTTTGAGCTTG	60.025	41.667	0.00	0.00	43.71	4.01
2817	3588	8.046294	AGACAACTCTGTGTATACTAAGTGAG	57.954	38.462	4.17	7.25	35.30	3.51
2825	3596	8.221766	GTGCTTTAAAGACAACTCTGTGTATAC	58.778	37.037	19.48	0.00	35.30	1.47
2901	3673	7.173562	TCGGTTGCATAGTACAAACAAGTATTT	59.826	33.333	0.00	0.00	34.28	1.40
2917	3689	0.885150	TGCGGTTGTTCGGTTGCATA	60.885	50.000	0.00	0.00	0.00	3.14
2929	3701	3.345808	CAGTGTCCCGTGCGGTTG	61.346	66.667	9.90	0.00	0.00	3.77
3004	3776	4.389374	CAACAAAGGTGAGGCTTCTCTAA	58.611	43.478	0.00	0.00	38.32	2.10
3070	3842	0.114168	TTTGGGGCCAAGCTGTATGT	59.886	50.000	4.39	0.00	37.24	2.29
3092	3864	1.713078	AGAAGGGTCCAAAGCCATTCT	59.287	47.619	5.56	5.56	46.01	2.40
3233	4006	6.194796	TCATAGGCTTGCACATAAAAGAAC	57.805	37.500	0.00	0.00	0.00	3.01
3241	4027	2.025981	TGTTCCTCATAGGCTTGCACAT	60.026	45.455	0.00	0.00	34.61	3.21
3328	4117	4.265073	TGGCTGATAGCTTTTCTTCCTTC	58.735	43.478	0.00	0.00	41.99	3.46
3351	4140	4.928661	AGTGTGTGATTTTCGAGTATGC	57.071	40.909	0.00	0.00	0.00	3.14
3359	4148	3.230976	AGGGGGAAAGTGTGTGATTTTC	58.769	45.455	0.00	0.00	31.13	2.29
3371	4160	4.527038	GGGTTTCTTCTTTTAGGGGGAAAG	59.473	45.833	0.00	0.00	35.85	2.62

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.