>input_sequence_52332
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--------------------------------------------------------CTATATAAATAAAACATGAACTTG
CAGATCAGGTCAAAGAAGCCCCCGTCAGATCGATTGCAGATTAGGTCTGCACCTGTTCCAGATCTGTCTTGTTGTGTTGC
CCTATACACCTCGATTGCGACCAAAATTGAGTCTTTAGACC---AACTCGGAGGAGCAGATCTTGGGACGAGGGATGTCC
AAGCGTCGGCAGGAGCAGGTAAACTACAGGGACCGCGCCGACAAAAAGTTGCGGTCTGTGCAGAGGCAGAAGCACCTCTA
TCTGGCGCTAGATGACTGGACCAAGGGCTTTGCTATCTACAAGATTGACATCGACACCTTGGACAGCAGCTCCGACCTGG
ACTTGGAGCCCCCGGTTCTCCGGCTAGTGTCAGCTTCACCTAGTTATCCCATGTACTTCGCTGCCCTGGGCAGCAATATC
TTCATGGCGAGCAGCAAACACCCTGGCACCATGGTCTACAACACAGAGACAGCCGGATTGGCGATCGGCCCTCCTCTCCC
TGATGGACTGCTCGGAGGCATTAAAATCTTTGTGGCTACTGCCAACATGCAGCTGTATGTGTTGAAGTATAGCTTCAAGG
AAATGCGACAGTCATTTGAGGTGATGTCCGCTGTGGGCATCAAGGATCCACATTCTTCAAATCCAAGCACGGACTGGTGC
TGGACAAGCGTGCCCTCACCACTGCCATTCAGCAAGGATGGCATCATCAACTCCTACGCCATGCACCCGGATGGACACAC
CATCTTCATGTCTGCCAGCAGCAGGCGCTATCTGCA---TCGCACCTTCTCCTTTGACACCAGGTGCCAAGAGTGGAGGT
GTCTTGGGGAATGGGCATTGCCTTTCCAAGGACAAGGCTACTTTGACAGTGAGCTGGATGCATGGGTTGGCCTTCACAAG
GATGGGTACATTTGTTCCTGCCAAGTGGCTTCCTGCACCGACAAAGGTACCATGCAACCTGACTGGAAGATGGGCAAGGA
GAAACTTTTCCTCAAGCACTCGG---------------------GTGCCACCCTCACATACATGGGGAGCACCATGTTTT
GCCTTGTTGAGAGTTTGGTACGTGAAG-AACTGGAGTTAGATGATGCCTTTGGTGACTGTAATGGCTTCATGCTCTGCAT
CACCATTTTTGGTGTCAAGTACAATCGTGAGGGAGAGCTGCAAACCACCATCCGCCGCACCACCAAATCCTATCCAGTGT
CTAAGCATGTCTCATCATTTTCTCCTGTGGCGTTCTGGTTTTAGCTAGGAACTAGATGACCCGTTGCGCCAATGGCGCAA
AGGGCGAGAGCGAGCCAAGTATTCAAACCATGCAAGTAAGAATATTTAGAGACCGAAGATCAAAAGAAGACGTCAATGGT
GTGGTCTTTGAGAGAAGATCGGCATCTTTTCTCCCTATTT---CAGTTGATTATAT--A---------------------
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>chr1A_1_TraesCS1A01G288000
GAGAATTGCTAGAAGTGGGGATCAACTTCTTAAGAATGTAAGATGTAAGATTTGCAGCAGATGCAATATAAAAGCAATCT
GTACCTTCCCAGCAGGAATTAAGCGTCCTTGCTTGAGGCAATGGTCCAACCAAAGGTCATTGACAACTGCAGCTCCACCC
TTTTCTTCCTTGGTGCACCACTCATTATCCTAAATATCATTCAGAAACTTGCTTTAGCATATAATGTGCTACAGGTAAAA
A-ACTGAAACAGGAATAAGA-----------------------GGTTAACGTCGTATGTTCATACAATCAGATGACTACA
CCCTGAATCCAACCCAACAAACTTAGATGATTTCGCTCCTCCGCTCTCCAAGGCG-------------------------
--AAAGAATAAGAGGTTATACTAACTGAAACTGAACTGGAACTATTCAGTTTATTCAGAGGGGCAGAATAAATCACGATA
GTTGGGACAGGAAAGGGTCGAGGATCAGTGGCAAAATATAGACATCGGTTTATTCTCGAATTAAGAACCATGGCCCCCCA
ATTCTATTGCTGAAAATTAATCAAACACATAGAGGTTTACAGGTTCACG------------------------CTATCAA
TTAGAGCGCTACGAAAATAGAACTTGACGAGCATGACTTGCAGA---AGTAGAAATCGAAGTACGACACAACCCGATTTG
GAGACGGCAGCAGAAGCAGGCCTGCGCC------------GCCCCACCGACGACCAACCACAGCGCCCCACTGAGGGTTG
CGTTCCTACTAGTTCCGTGCGTCGATCCCGACGACCCTCGATCGGGTCGACGTCCTGATCAACGCGTTCTCGCTCGGCGA
GTCTCATTCCCACGATCCTCAACCAGTCGAA------GGCGGCGGCGGCGCGCTGAGGTCTTGCAACCGTGTTGCTTTCG
GTCCCCGTCTCTATCTCTGATTCAACCACACGGCCGGCTCGGATTCTGCCGAGGTATATATGTGTTCCCCTCTTGTGTTC
GGTTGCAAGCAGAGTCGGTTTCTTAATTCGATTTGGATTAGTTAGGCAGACAGGGTCTATATAAATAAAACATGAACTTG
CAGATCAGGTCAAAGAAGCCCCCGTCAGATCGATTGCAGATTAGGTCTGCACCTGTTCCAGATCTGTCTTGTTGTGTTGC
CCTATACACCTCGATTGCGACCAAAATTGAGTCTTTAGACC---AACTCGGAGGAGCAGATCTTGGGACGAGGGATGTCC
AAGCGTCGGCAGGAGCAGGTAAACTACAGGGACCGCGCCGACAAAAAGTTGCGGTCTGTGCAGAGGCAGAAGCACCTCTA
TCTGGCGCTAGATGACTGGACCAAGGGCTTTGCTATCTACAAGATTGACATCGACACCTTGGACAGCAGCTCCGACCTGG
ACTTGGAGCCCCCGGTTCTCCGGCTAGTGTCAGCTTCACCTAGTTATCCCATGTACTTCGCTGCCCTGGGCAGCAATATC
TTCATGGCGAGCAGCAAACACCCTGGCACCATGGTCTACAACACAGAGACAGCCGGATTGGCGATCGGCCCTCCTCTCCC
TGATGGACTGCTCGGAGGCATTAAAATCTTTGTGGCTACTGCCAACATGCAGCTGTATGTGTTGAAGTATAGCTTCAAGG
AAATGCGACAGTCATTTGAGGTGATGTCCGCTGTGGGCATCAAGGATCCACATTCTTCAAATCCAAGCACGGACTGGTGC
TGGACAAGCGTGCCCTCACCACTGCCATTCAGCAAGGATGGCATCATCAACTCCTACGCCATGCACCCGGATGGACACAC
CATCTTCATGTCTGCCAGCAGCAGGCGCTATCTGCA---TCGCACCTTCTCCTTTGACACCAGGTGCCAAGAGTGGAGGT
GTCTTGGGGAATGGGCATTGCCTTTCCAAGGACAAGGCTACTTTGACAGTGAGCTGGATGCATGGGTTGGCCTTCACAAG
GATGGGTACATTTGTTCCTGCCAAGTGGCTTCCTGCACCGACAAAGGTACCATGCAACCTGACTGGAAGATGGGCAAGGA
GAAACTTTTCCTCAAGCACTCGG---------------------GTGCCACCCTCACATACATGGGGAGCACCATGTTTT
GCCTTGTTGAGAGTTTGGTACGTGAAG-AACTGGAGTTAGATGATGCCTTTGGTGACTGTAATGGCTTCATGCTCTGCAT
CACCATTTTTGGTGTCAAGTACAATCGTGAGGGAGAGCTGCAAACCACCATCCGCCGCACCACCAAATCCTATCCAGTGT
CTAAGCATGTCTCATCATTTTCTCCTGTGGCGTTCTGGTTTTAGCTAGGAACTAGATGACCCGTTGCGCCAATGGCGCAA
AGGGCGAGAGCGAGCCAAGTATTCAAACCATGCAAGTAAGAATATTTAGAGACCGAAGATCAAAAGAAGACGTCAATGGT
GTGGTCTTTGAGAGAAGATCGGCATCTTTTCTCCCTATTT---CAGTTGATTATAT--AAAAAACTAAATGCAGCCGCTT
AGGGACATATTCTTAATAGCATCAAAAGGGAAGCACTAAAGATCCAAAAGCAAGTGCATATCTATTTGTAGTGAAAAGAA
AATAT-------------------CATAA----TAAGCAAGCAACACTATGCAGTGCAGAAATCATAACCAGAATTATTC
ATAACTGAAACAAATGCCAAGTAGTAAAATTAAGCAACAAACATCATTGCCTAATCAATCATCCTTCAATTT-TAGTTTT
ACTCTGCTGGGCTAACACGACCCAATCAGAAAAGAAGAATGGACCTG----AAGGCTATAGGAAATGATTCAACATTGAA
ATATTCGGCATTGGAAGTTGAGTG--------------------------------------------------------
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-------------------------------------------------------------------------AAACTAA
AATTGCACAACAAAACGCCC----CTGTTTCTGCAAGCTCAAAGAAATTTGGCAACCATATTAATACCTCACTTAGTATA
CACAGAGTTGTCTTTAAAGCACCAAAAGTTTACTTCCCGAATATTTACAGATGATCAAGAACTA-ACCATTTAAATACTT
GTTTGTACTATGCAACCGAACAACCGCACGGGACACTGGACAATCTAATCTATCATGCTACCAAACCATGCCATTTCTTA
ATTTTCTTAAGAGTTTTAGAGAAGCCTCACCTTTGTTGGTGTTCGACAGCACCATGCCGCCCATGGAGAGCACCGCTACA
CACATACAGCTTGGCCCCAAAGAAGAATGGCTTTGGACCCTTCTGAGAAGCTTGATTTGAAAACCGAGCAAATCAGTCCT
TTTTT-TCTACAAATAACCTTAGAAAGATCAAATTTTCCTTTCATGAAGGTATATAGAAGCAGTAAGAAAACAAAAAAGA
AAAAGG-------------TTCTTTTATGTGCAAGCCTATGAGGAACACCAAAGCAAACAAAACCCATGAGGTAGTCGTT
CAGATTTTTTT-CACAAGGCCAT--TGAGAAACACCGAAGGAAGAAAAGCTATCAGCCAGCATACTCGAAAATCACACAC
TTTCCCCCTAAAAGAAGAAACCCAATGTCCTAGCTCAA
>chr1D_1
GAGAATTGCTAAAAGTAGGGGTCAACTTCTTAAGA-------ATGTAAGATTTGCAGCAGATGCAATATAAAAGCAATCT
GTACCTTCCCAGCAGGAATTAACTGTCCTTGCTTGAGGCAATGGTCCAACTAAAGGTCATG-------GCAGCCCCTCCC
TTTGTTACCTTGGTGCACCAATCATTATCCTAAATATCATTCAGAAACTTACTTTAGCATATAATGTGCTACAAGTAAAA
AAACTGAAACAGCAAATGCACCGTGAAAGAATTTTCCTCACATGGTTAACATTGTATGTTGATACAATCAGATGACTACA
CCCTGAATCCACCCCAACGAACTTGGAT------------------------------GTATACTGTCAATTTGATCACG
CAAAAGAATAAGAGATTATACTAACTGAAACTGAACTGGAACTATTCAGTTTATTCAGAGGGGCAGAATAAATCACGATA
GTTCGGGCAGGAAAGGGTCGAGGATCAGTGGCAAAACATAGACATCGGTTTATTCTC-----------------------
-------------AAATTAATCAAACACATACAGGTTTACAGGTTCTCGTCTCTCTGCGTGACCACTGCCACGCTATCAA
TTAGAGCGCTACGAAAATAGAACTCGACGAGCATGTACAGAACTACTCC-------------------------------
GAGACGGCAGCAGCAGCAGGCCTGCGCC------------GCCCCACCGACGACCAACCACAGCGCGGGTTCCGCGTTTC
--------------------------------------------------CGTCCTGATCAACGCGTTCTCGCTCGGCGA
CTCTCATTCTCACGATCCCCAACCAGTCGAAGGCGGCGGCGGCGGCGGCGCGCTGAGGTCTTGCAGCCGTGTTGCTTTCG
GTCCCCGTCTCTATCTCTGATTCAACCACACGGCCGGCTCGGATTCTGCCGAGG----TATGTGTTCCCCTCTTGTGTTC
GGTTGCAAACAGAGTCGGTTTCTTAATTCGATTTGGATTAGTTAGGCAGACAGGGTCTATATAAATAGAACATGAACCTG
CAGATTACGTCAAAGAAGCCCCCGTCAGATCGACTGCAG------TCTGCACCTATTCCAGATCTGTTTTGCTGTGTTGC
TC--TACACCTCGATTGCGACCAAAATTTTGTCTTTAGTAGACAAACTCGGAGGAGCAGATCTTGGGAGGAGGGATGTCC
AAGCGTCGGTAGGAGCAGGTAAGCTACAGGGACCGCGCAGACAAGAAGTTGCGGTCTGTGCAGAGGCAGAAGCATCTCTA
TCTGGCGCTAGATGACTGGACCAAGGGCTTGGCTATCTACAAGATTAACATCGACACCTTGGACAGCAGCTCCGACCTGG
ACTTGGAGCCCCCAGTTCTCCGGCTAGTGTCAGCTTCAC-TAATTATCCCATGTACTTCGCTGCCCTGGGCAGCAATATC
TTCATGGCGAACAGCAAACACCCTGGCACCATGGTCTACAACACAGAGACAGCTGGATTGGCCATCGGCCCTCCTCTCCC
TGATGGACTACTCGGAGGCATTAAAATCTTTGTGGCTACTGCCAACATGCAGTTGTATGTGTTAAAGTATAACATCAAGG
AAATGCGACAGTCATTTGAGGTGCTGTCTGCGGTGGGCATCAAGGATCCACATCCTTCAAATCCAAGCATGGACTGGTGC
TGGACAAGCGTGCCCTCACCACTGCCATTCACCAAGGATGACATGATCAACTCCTACCCCATGCACCCGGATGGACACAC
TATCTTCATGTCTGCTAGCAGCAGGCGCTATCTGCA---TCGCACCTTCTCCTTTGACACCAGGTACCAAGAGTGGAGGT
GTCTTGGGGAATGGGCATTGCCTTTCCAAGGACAAGGCTACTTTGACAGTGAGCTGGATGCATGGGTTGGCCTTCACAAG
GATGGGTACATTTGTTCCTGCCAAGTCGCTTCCTGCACCGACGAAGGTACCATGCAACCTGACTGGAAGATGGGCAAGGA
GAAACTTTTCCTCAAGCACTCGG---------------------ATGCCACCCTCACATACATGGGGAGCACCAGGTTTT
GCCTTGTAGAGAGTTTGGTATGTGAAG-AACTGGAGTTTGATGACGCCTTTGGTGACTGTAATGGCTTCATGCTCTGCAT
CACCATTTTTGGTGTCAAGTACAATCGTGAGGGAGAGCTGCAAACCACCATCCGCCGCACCACCAAATCCTATCAAGTGT
CTAAGCATGTCTTGTCATTTTCTCCTGTGGCGTTCTGGTTTTAGCTAGGAATTAGCTG----------------------
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>chr1B_46
TAAAT----------------------------------------------TTGCAGCAGATGCAATATAAAAGCAATCC
GTACCTTCCCAGCAGGAATTAAGCGCCTTTGCTTGAGGCAATGGTCCAACCAAAGGTCATTAACAACTGCAGCTCCACCC
TTTTCTCCCTTGGTGCACCACTCATTATCCTAAATATCATTCAGAAACTTGCTTTAGCATATAATGTGCTACAGGTAAAA
AGACTGAAACAGCAAATGCACCGTGAAACAATTTTCCTCACATGGTTAACGTCATATGTTGATACAATTAGATGACTACA
CCCTGAATCCACCCCAAAGAACTTGGATGGTATTGCTCCTCCGCTCTCCAAGGCAGCAGTATACTGTCAATTTGATCACG
CAAAAGAATAA------------------------------CTATTCAGTTTATTCAGAGGGGCAGAATAAATCACGATA
GTTGGGACAGGAGAGGGTCGAGAATCAGTAGCAAAACATAGACATTGGTTTATTCTCGAATTAAGAACCATGGCCCCCCA
A-TCTATTGCTGAAAATTAATCAAACTCATACAGGTTTACAGGTTCTCATCTCTCTGCGTGACCAGTACCACGCTATCAA
TTAGAGCGCTACGAAAATAGAACCCGACAAGCATGACTTACGGACCTAGTAGAAATCAAAGTACGACATAA-CCGATTTG
GAGACGGCAGCAGCAGCAGGCCTGCGCCAGCGCCTGCGCCGCCCCACCGCCGACCAACCACAGCGCGCTACCGAGGGTTG
CGTTCCTACTAC-TCCGTGCCTCGATCCCGACGACCCTCGATCGGGTCGA------------------------------
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>chr1B_787
GCGGTCT-------------------------------------------------------------------------
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-----ATTCCCACGATCCCAACCAGGC----GGCGGCGGCGGCGGCGGCGCGCTGAGGTCTTGCAACCGTGTTGCTTTTG
GTCCCCGTCTCTATCTCTGATTCAACCGCACGGCCGGCTCGGATTCTGCCGAGG----TATGTGTTCCCCTCTTGTGTTC
GGTTGCAAACAAAGACGGTTTCTTAATTCGATTTGGATTAGTTAGGCAGACAGGGTCTATATAAATAAAACACGAACCTG
CAGATTACGTCAAAGAAGGCCCCGTCAGATCGATTGCAG------TCTGCCCCTATTCAAGATCTGTCTTGTTGGGTTGC
CCTATACACCTCGATTGCGACCAAAATTGAGTCTTTAGACG---AACTCGGCTGAGCAGATCTTGGGAGGAGGGATGTCC
AAGCGTCGGCAGGAGCAGGTAAGCTACAGGGACCGCGCCGACAAAAAGTTGCGGTCTGCGCAGAGGCAGAAGCACCTCTA
TCTGGCGCTAGATGACTGGACCAAGGGCTTTGCTATCTACAAGATTGACATCGACACCTTGGACAGCAGCTCCGACCTGG
ACTTGGAGCCCCCGGTTCTTCGGCTAGTGTCAGCTTCACCTCCTTATCCCATGTACTTCGCTGCCCTGGGCAGCAATATC
TTCATGGCGAGCAGCAAACACCCTGGCACCATGGTCTACAACACAGAGACAGCTGGATTGGCCATCGGCCCTCCTCTCCC
TGATGGACTACTCGGAGGCATTAAAATCTTTGTGGCTACTGCCAACATGCAGCTGTATGTGTTGAAGTACAACATCAAGG
AAATGCGACAGTCATTTGAGGTGATGTCCGCGGTGGGCATCAAGGATCCACATTCTTCAAATCCAAGCACGGACTGGTGC
TGGACAAGCGTGCCCTCACCACTGCCATTCACCAAGGATGACATGATCAACTCCTACGCCATGCACCCGGATGGACACAC
TATCTTCATGTCTTCTAGCAGCAGGCGCTAT-----------CACCTTCTCCTTTGACACCAGGTACCAAGAGTGGAGGT
GTCTTGGGGAATGGTCATTGCCTTTCCAAGGACAAGGCTACTTTGACAGTGAGCTGGATGCATGGGTTGGCCTTCACAAG
GATGGGTACATTTGTTCCTGCCAAGTCGCTTCCTGCACCGACAAAGGTACCATGCAACCTGACTGGAAGATGGGCAAGGA
GAAACTTTTCCTCAAGCACTCGG---------------------ATGCCACCCTCATATACATGGGGAGCACCAGGTTTT
GCCTTGTAGAGAGTTTGGTACGTGAAG-AACTGGAGTTTGATGACGCCTTTGGTGACTGTAATGGCTTCATGCTCTGCAT
CACCATTTTTGGTGTCAAGTACAACCGTGAGGGAGAGCTGCAAACCACCATCCGCCGCACCACCAAATCCTATCAAGTGT
CTAAGCATGTCTTGTCATTTTCTCCTGTGGCGTTCTGGTTTTAGCTAGGAATTAGCTG----------------------
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>chr1D_1146
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--------------------------------------------AACTCGGAGGAGCAGATCTTGGGAGGAGGGATGTCC
AAGCGTCGGCTCC--------AACTACAGGGGCCGCGCCGACAAGAAGTTGCGGCCTGTGCAGAGGCAGAAGCACCTCTA
TCTGGTGCTAGATGACTGGACGAAGGACTTTTCCATCCGCAAGATTGACATCGACACCTTGGACGGCAGCTCCGACCTGG
ACTTGGAGCCCCCGATTCTCCGACTAGTGTCACCTTCACCTACTTATCCCATGAACTTCGCTGCCCTGGGCAGCAAAATC
TTCATGGCAAGCAACAAACACCCTAGCACCATGGTCTACGACACAGAGACAGCTGGACTGGCCATCGGCCCTCCTCTTCC
GGCCGGACTGCACGGCGGTATCCACATCTTTGTGGCTACTGCCAACACGCAGTTGTATGTGTTGAAGTATAGCATCAAGG
AAATGCGACAGTCATTTCAGGTGCTGTCCGCGGTCGGCATCACGTATCCCCATTCTTCAAATCCAAGCACGGACTGGTGT
TGGACAAGCGTGCCCTCTCCAGTGCCATTCACCAAGGATGACATGATCACCTCCTA------------------------
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----------------------TTTCCAAGGACAAGGCTACTTTGACAGTGAGTTGGATGCATGGGTTGGCCTTCACAAG
GATGGGTACATTTGTTCCTGCCAAGCCGCTTCCTGCACCAACACAGTTACCATGCAGCCGGACTGGAAGACGACTAAGGA
GAAACTTTT------------------------------------------CCTCACGTACATGCGGAACACCAGGTTTT
GCCTTGTGGAGAGTGTGGTATGTGAAG-AAGTGGAGTTAGATGATGCCTTTGGTGACTGTAATGGCTTCATGCTCTGCAT
CACCATTTTTTGTCTCAAGTACAATCGTGAGGGAGAGCTGCAAACCACCATCCGCCGCACCACCAAATCCTATCAAGTGT
CTAAGCATGTCACGTCATTTTCTCCCGTGGCGTTCTAGTTTTAGCTAGGAA-----------------------------
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>chr1B_1258
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----------------------------------------------------------------------------TCTA
TCTGGTGCTAGATGACTGGACGAAGGACTTTTCCATCCGCAAGATTGACATCGACACCTTGGACGGCAGCTCCGACCTAG
ACTTGGAGCCCCCGATTCTTCGACTAGTGTCACCTTCACCTACTTATCCCATGAACTTTGCTGCCCTGGGCAGCAAAATC
TTCATGGCGAGCAACAAACACCCTAGCACCATGGTCTACGACGCAGAGACAGCTGGACTGGCCATCGGCCCTCCTCTCCC
GGCTGGACTGCACGGCGGCATCCACATCTTTGTGGCTACTGCCAACATGCAGTTGTATGTGTTGAAGTATAGCATCAAGG
ACATGCGGCAGTCATTTCAGGTGCTGTCCGCGGTCGGCATCACGGATCCCCATTCTTCAAATCCAAGCACTGACTGGTGT
TGGACAAGCGTGCCCTTTCCAATGCCATTCACCAAGGATGACATGATCACCTCCTACGCCATGCACCCGGATGGACACAT
TATCTTCATGTCTGCTAGCAGCAGGCGCGATCT---ACGTCACACCTTCTCCTTTGACACCAGGTGGCAAGAGTGGAGGT
GTCTTGGGGAATGGGCATTGCCTTTCCAAGGACAAGGCTACTTTGACAGTGAGTTGGATGCATGGGTTGGCCTTCACAAG
GATGGGTACATTTGTTCCTGCCAAGCCGCTTCGTGCACCAACACAGTTACCATGCAGCCGGACTGGAAGACGACCAAGGA
GAAACTTTTCCTCAAGCACTCGG---------------------GTGCCACCCTCACGTACATGGGGAACACCAGGTTTT
GCCTTGTGAAGAGTGTGGTATGTGAAG-A-GTGGAGTTAGATGATGCCTTTGATGACTGTAATGGCTTCATGCTATGCAT
CACCATTTTTTGTCTCAAGTACAATCGTGAGGGAGAGCTGCAAACCACCATCCGCCGCACCACCAAATCCTATCAAGTGT
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>chr1A_1579
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-----------------------------------------------------------------------------AGG
AAATGCGACAGTCATTTCAGGTGATGTCCGCGGTCGGCGTCGAGGATCCCCATTCTTCAAATCCAAGCACGGACTGGTAC
TGGACAAGCGTGCCCTCTCCACTGGCATTCACCAAGCATGACATAATCACCTCCTACGCCATGCACCCTGATGGACACAC
TATCTCCATGTCTTCTAGTAGCAGGCGCAATCT---ATGTCGCACCTTCTCCGTTAACACTAGGTGCCAAGAGTGGTGGT
GTCTTGGGGAACGGGCATTGCCTTTCCAAGGACAAGGCTACTTTGACAGTGAGTTGGATGCATGGGTTGGCCTTCACAAG
GATGGGTACATTTGTTCCTGCCAAGCCGCTTCCTGCACCAACACAGGTACCATGCAGCCGGATTGGAAGATGGGCAAGGA
GAAACTTTTCCTCGAGCAGTCG----------------------ATGCCACCCTCACATACATGGGGAACACCAGGTTTT
-CCATGTGGAGAGTTTGGTATGTGAAG-AACTGGAGTAAGATGACGCCTTTGGTGACTGTAATGGCTTCATGCTCTGCAT
CATCATATTTT---------------------------------------------------------------------
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>chr3D_1655
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-------------------------------------------------------------------------CTGGTCA
TGGAGAAGCGTGCCCTCGCCGCCGCCGTTCGAGGAGGATGAATGGATCACCTCCTACGCCGTGCACCCGGATGGACACAC
CATCTTCATGTCTGTGCTCAACAATCACAATATGAAACGCCGTACCTTCTCCTTCGACACCGGGCACGTCGAGTGGAGGT
TCCATGGGGAACGGGCCTTGCCTTTCCAAGGCCAGGGCTACTATGACAGCACGCTGGACGCATGGGTTGGCCTTCGCGAG
GATGGCTACGTCTGCGCCTGCCAGGTCGCGCCCCGCAGCGGCG------CCATGCGGCCGGAGTGGAAGATCGTCAAGGA
GAAGATGTTCCACAAGGTCCCGGAGAGGAAGCAGGCTGCGTCGTATGCCACTCTCACGTACATGGGCAACGCCAGGTTTT
GCCTTATGGAGTCCGTTGTACGTGAGGAA-GTGGAGTATGAGGATGCCTTTGGTGATTGTGATGGCTGCATGCTCCATAT
GACCAGGTTTGGCCTCAGGTACAGTCATAAGGGAGAGCTGCAGACGACCATCGATTTTACCACCAGCTCTTATCCATTGT
CGAAGCATTTCACAGATTTTTCTCCTGTAGCGTTCTGGATGTAGCTAGG-------------------------------
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>chr3D_2248
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---------------------------------------------------CTAGATGACCCGTTGCGCCAATGGCGCAA
AGGGCGAGAGTGAACCAAGTATTCAAACCATGCAAGTAAGAATATTTAGAGACCGACGATCAAAAAAAGACGTCAATGTT
GTGGTCTTTGAGAGAAGATCGGCATCTTTTCTCCCTATTTTCACAGTTGATTCTATCAAAAAAACTAAATGCAGCCACTT
AGGGACATATTCTTAGTAGCATCAAAAGGGAAGCACTAAAGATCCAAAAGCAAGTGCATATCTGTTTGTAGTGAAAAGAG
AATAT-------------------CATAATAATTAAGCAAGCAACACTATGCAGTGCAGAAATTTTAACCAGAATTATTC
ATATTTGAAACAAATATCAAGTAGTAAAATTAAGCAACAAACATCATTGCCTAATCAATCATCCTTCA-TTT-TAGTTTT
ACTCTGCTTGGCTAACACGACCCAATCAGAGAAGAAGAATAGACCTGCCGGAAGGCTATAGGAAATGATGTAACGTTGAA
ATATTCAACACTGTAAGTTGAGTG--------------------------------------------------------
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-------------------------------------------------------------------------AAACTAA
AATTGGACAACAAAACGCCC----CTATTTCTGTAAGCTCAAAGAAATTTGGCAACCATCTTAATACGTCACCTAATATA
CACAGAATTGTCTTTAAAGCACCAAAAGTTTACTTCCCGAATATTTACAGGTGATCAAGAACTA-ACCATCTGAATACTT
GTTTGTACAATGCAACCGAATAACCACACGATACACTGGACAATCCAATCTATCATGCTACCAAACCATGCCATTTCTTA
ACTTTCCTAAGAGTTGTAGAGAAGCCTCACCTTTGTTGGTGTTCAGCAGCACAATGCCGCCCATGGAGAGCACCGCTACA
CGCATACAGCTTGGCCCCAAAGATGAACGGCTTTGGACCCTTCTAAGAAGCTTGATTTGAAAACCGAGCAAATCAGTCTT
TTTTT--CTACAAATGACCTTAGAAAGATCACATTTTCCTTTCATGGAGGTATATAGAAGCAGTAAGAAAACAAAAAAGG
AAAAGACTGCATACTCCATTTCTTTTCTGTGCAAGCCTATGAGGAACACCAAAGCAAACAAAACCCATGAGGTAGTCGTT
CAGATTTTTTT-CTGTGCAAGCCTATGAGAAACACCAAAGGAAGAAAAGCTATCAGCCAACATACTCAAAAATCACACAT
TTCCCCCTTAAAAGAAGAAACCCAATGTCCTAGCTCAA
>chr7D_2248
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---------------------------------------------------CTAGATGACCCGTTGCGCCAATGGCGCAA
AGGGCGAGAGTGAACCAAGTATTCAAACCATGCAAGTAAGAATATTTGTAGACTAACAAT-AAAAAAAGACGTCAATGTT
GTGGTCTTTGAGAGAAGATCGGCATCTTTTCTCCCTATTTTCACAGTTGTTTCTAACAAAAAAAATAAATGCAGCCACTT
AGGGACATATTCTTAATAGCATCAAAAGGGAAGCACTAAAGATCCAAAAGCAAGTGCATATCTGTTTGTAGTGAAAAGAG
AATAT-------------------CATAATAA----GCAAGCAACACTATGCAATGCAGAAATTTTAACCAGAATTATTC
ATATCTGAAACAAATATCAAGTAGTAAAATTAAGCAAGAAACATCATTGCCTAATCAATCATCCTTCATTTT-TAGTTTT
ACTCTGCTTGGCTAACACGACCCAATCAGAAAAGAAGAATAGACCTGCCGGAAGGCTATAGGAAATGATTTAACGTTGAA
ATATTCAGCACTGTAAGTTGAGTG--------------------------------------------------------
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-------------------------------------------------------------------------AAACTAA
AATTGGACAACAAAACGCCC----CTGTTTCTGTAAGCTCAAAGAAATTTGGCAACCATCTGAATAGGTCACCTACCATA
CACAGAGTTGTCTTTAAAGCACCAAAAGTTTACTTCCTGAATATTTACAGGTGATCAAGAACTA-ACCATCTTAATACTT
GTTTGTACAATGCAACCGAATAACTGCACGGGACACTGGACAATCCAATCTATCATGCTACCAAACCATGCCATTTCTTA
ATTTTTCTAAGAGTTCTAGAGAAGCATCACCTTTGTTGGTGTTCAGCACCACAATGCCGCCCATGGAGAGCAGCGCTACA
CGCATACAGCTTGGCCCCAAAGATGAACGGCTTTGGACCCTTCTGAGAAGCTTGATTTGAAAACCGAGCAAATCAGTCTT
TTTTTTTCTACAAACGACCTTAGAAAGATCACATTTTCCTTTCATGAAGGTATATAGAAGCAGTAAGAAAACAAAAAATA
AAAAAACTGCATACTCCATTTCTTTTCTGTGCAAGCCTATGAGGAACACCAAAGCAAACAAAACCCATGAGGTAGTCGTT
CAGATTTTTTTTCACAAGGCCAT--TGAGAAACACCAAAGGAAGAAAAGCTATCAGCCAACATACAAAAAAATCTCACAT
TTT-CCCCTAAAAGAAGAAACCCAATGTCCTAGCTCAA
>chr7A_2254
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---------------------------------------------------------GACCTGTTGCGCCAATGGCGCAA
AAGGCAAGAGCGAACCAAGCTTTT-AATCATGCGAGTAAGAATATTTGGAGACCAATGATCAACAAAAGGCATCAATGTT
ATGGTCTTCGAGAGAAGATCGACATCATTTTCCCCTATTTTCACAGCTGATTCTATTAAAG-AACTAAATGCAGCCACTT
AGGGTCATATTCTTAATAGCGTAGAAAGGGAAGCACTAAGGATCCAAAAGCAAGTGCATATCTATTTGTAATGAAAAGAG
ATGCCTCCCAGTTATCTCTAATCCCATAACAA----GAAAGCAGTACTATGTAGTGTAGAAATCATAACCAGAATTATTC
ATATATGAAACAAACACCAAGCAGTAAAATCAAACAACAAATATCATTGCCTAATCAGTCATCCTTCA-TCTCTAGTTTT
AGTCTGATGGCCTAGGACAACCCAATTAGAAAAGAAGAATGGACTTGCTGGAAGCATATAGGAAATGATTCAACGCTGAG
ATATTCAATACTGATTGTTAATGCATCACTCCCTAATATCATACACTCTTTGCGCATCGGGAATTTCTCTTTGAACTAAC
ATGGACAATGTATAAATGATTTAACCTGCCATGCCTTATTTTGTTCTCATGCAAAGGCAATTAAAACCAAAAAATCATGT
GGGTATTTGTAACAACTATAATGTGGTATCTAAAATTGATTGAAAGAGAAAGAAAGATAATTAAGGTCATCTGCATTGAT
ACTTGTATAGTAGTTTAGATGGATGATCCACTCTTTATAGGAAACAATAATCCACAAGGGAATATAACCAACTGCTGAGC
GCATCACACATGGCACAAAAACATTATGAACATGAAGTTTGCCATACAAGCTATAGGTGACAATACAGATTAATGACGAT
GTCTCCAGGGAGTGAATAGTGAGACGAAGATGTTTTGGCATGCATCTGAAGGAACAGTTCTCATAATTTAGGAGAGCGTC
AAAGGCTGCATGGTATGATTGGATAATCAGCATTCCTGAACAGATCTGACATTCACCAATTTTATCTAATATTGTGTATA
AACCCAAACAATTAATAGAAAACTTATTACCAAAAGTACATCTCATTCATATGATAACTATTCAGAATACTCAAAACTAA
AATTAGAGAAGAACAAAAGCGAAACTATTTCTGTAAGCTCAAAGAAATTTGGCAACCATCTTAATACGTCACCTAATATA
TGCAGAGTATTTTAAAGAGAACCAAAAGTTTACTTCCTGAATATTTACAGGTGATCAAGAACTAAACCATATTAATACTT
GTTCGTACAATGCAACTGAATAACCGCACGGCACACTGGACAATCCAACCTAGCATGCTACCAAACCATGTCATTTCATA
ATTTTCTTAAGAGTTCTAGAGAAGCCTCACCTTTGTTGGTGTTCACCAGCGCCATGCTGCCCATGGAGAGCCCAGCTACG
TGCATACAGCTTGGTCCCAAAGATGAATGGCTTCGGACTTTTTTGAGATAGCT---------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>SNPs
-----------S----S---S--------------SSSSSSS--------------------------------------
-------------------------------------------------------------S------------------
------S-------------------------------------------------------------------------
------------S--SSSS-----------------------------------------S-------------------
-----------S------S-----S----S-S-S--------------------S-------------------------
--------------S-----------------------------------------------------------------
------------------------------------S-------------------------------------------
-S-----------------------------S--------------S---------------------------------
------------------------S--------------------------------S----------S--S--------
-------------S----------------------------------------------------S-S--S--------
-----------SS-------S-----------------------------------------------------------
S-----------------S-------------------------------------------------------------
------------------------------------------------------SSSS----------------------
--------S--------------------------------------------------------------------S--
-----S-S-------------------------------SSSSSS---------S-------------------------
----------------------------------------S---------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------S--------S-----------------
-------------------------------------------------------------------------S------
-------------------------------S------------------------------------------------
-------------------------------S--------S---S-----------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------S-----
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------S--------S------------S-
----------------------------------------------------S-----------------------S---
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
---S-----------S----------------------------------------------------S-----------
--------------------------------------------------------------------------S-----
------S---S--S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S---------------------------S-------------------------S-------S----S--S----
--------------------------------------------------S-------------------S-S-------
--------S-----------S------------------------S----------------------------------
---------------S----------------------------SS----------------------------------
-S---------------------S------------------------------------------------------S-
---------------S---------------S------------------------------------------------
-----S--------------------S-----------------------------------------------------
------------------------------------S----------------------S-------S-----------S
--------------------------------------
>forward_167
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-------------------------------------------------------------------TGCAGCTCCACCC
TTTTCTT-------------------------------------------------------------------------
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>reverse_1712
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-------------------------------TGTGGGCATCAAGGATCCAC-----------------------------
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>forward_1160
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--------------------CCCGTCAGATCGATTGCAGA----------------------------------------
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>reverse_3526
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-----CACAACAAAACGCCCCTGTT-------------------------------------------------------
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--------------------------------------
